Citrus Sinensis ID: 012677
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SRT0 | 460 | U-box domain-containing p | yes | no | 0.969 | 0.965 | 0.567 | 1e-136 | |
| Q3E9F7 | 458 | Putative U-box domain-con | no | no | 0.917 | 0.917 | 0.432 | 3e-91 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.803 | 0.602 | 0.437 | 1e-78 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.858 | 0.600 | 0.410 | 4e-75 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.801 | 0.556 | 0.419 | 9e-74 | |
| Q3E9F6 | 445 | Putative U-box domain-con | no | no | 0.901 | 0.928 | 0.396 | 1e-71 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.803 | 0.601 | 0.421 | 2e-71 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.801 | 0.580 | 0.433 | 4e-71 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.814 | 0.537 | 0.412 | 3e-69 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.814 | 0.537 | 0.412 | 3e-69 |
| >sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 485 bits (1249), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/453 (56%), Positives = 336/453 (74%), Gaps = 9/453 (1%)
Query: 11 SCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGD 70
+ + KA ELK+E+++L+ I DEDD G +Q ++ LS L++ ++K K +
Sbjct: 12 TAIAKAKELKREMKKLLIKIDDEDDLG-VQTIDQLQDALSALREATMRK--MAKSSSLEM 68
Query: 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130
+ P EFRCP+S E+M DPVVLA+GQT+D+ IQ+WL GNRTCP+T+QVL HT L
Sbjct: 69 LETVSCPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALT 128
Query: 131 PNHLVREMISQWCKEHGIELPK---PIKDTDEDVVTDASRSHLNSLLEKMSSS-LSDQKE 186
PN L+REMIS+WCK++G+E P +++ VT + R NSLL K+SSS L DQK
Sbjct: 129 PNLLIREMISKWCKKNGLETKSQYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKS 188
Query: 187 AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246
AAKELRLLT++ FRALFGES D I L++PL G ++ D L ED++TT+LN+SIHD+
Sbjct: 189 AAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHG-SNPDEKLQEDVVTTLLNISIHDD 247
Query: 247 -NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDL 305
NK+LV ENP IPLLID++R GT+ TR NAAAA+F+LSALDSNK++IGK G + PLIDL
Sbjct: 248 SNKKLVCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDSNKVLIGKSGILKPLIDL 307
Query: 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS 365
LEEG+PLA+KDVA+AIF+LCI EN+ RAV GAVRV+ +KI VDELLAILAML +
Sbjct: 308 LEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNGLYVDELLAILAMLVT 367
Query: 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGT 425
H A+EE+GELG + LL+I RES C+RNKEN IL+ ICF+DRT+ +EI EEENA+GT
Sbjct: 368 HWKAVEELGELGGVSWLLKITRESECKRNKENAIVILHTICFSDRTKWKEIKEEENAHGT 427
Query: 426 LSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
+++L+ GTSRA+RKANGIL+RL KA + HTA
Sbjct: 428 ITKLSREGTSRAQRKANGILDRLRKAMNLTHTA 460
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Functions as an E3 ubiquitin ligase (By similarity). May be involved in the abscisic acid-mediated signaling pathway, at least during germination. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana GN=PUB46 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 194/449 (43%), Positives = 288/449 (64%), Gaps = 29/449 (6%)
Query: 19 LKKELQRLVKAIL------DEDDY----GGLQVTNEALRVLSCLKDLKLKKPHSFKGGAA 68
L++ELQ+++ IL D D+ G ++ +EA+R+L+CL+ ++ K P S
Sbjct: 12 LRRELQKVLTEILNDGGGNDRDETEAFSGVVKAIDEAVRILTCLRKVESKIPES------ 65
Query: 69 GDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128
D + +P EF C +S IM +PV++A+GQT+++ I WL + RTCP+T+QVLSH +
Sbjct: 66 -DISPVEVPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWL-KHERTCPKTKQVLSHRL 123
Query: 129 LIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSS--LSDQKE 186
IPNHL+ ++I+QWC + + KP +++V + S + +LL+++SSS ++DQ E
Sbjct: 124 WIPNHLISDLITQWCLVNKYDHQKP----SDELVAELFTSDIEALLQRVSSSSSVADQIE 179
Query: 187 AAKELRLLTKRMPLFRALFGEST-DAIPLLLSPLSP--GRADTDPGLLEDLITTILNLSI 243
AAKELR TK+ P R F D+I LLSPLS D+ L E+++T + NLSI
Sbjct: 180 AAKELRHQTKKFPNVRVFFVAGIHDSITRLLSPLSTLDEAVDSSLELQENIVTALFNLSI 239
Query: 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLI 303
+ NK ++AEN L IPLL S++ GT ETRRNAAA L SLSA+DSNK+IIG A+ LI
Sbjct: 240 LESNKTVIAENCLVIPLLTKSLKQGTDETRRNAAATLSSLSAIDSNKIIIGNSEAVKALI 299
Query: 304 DLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAML 363
DL+EEG LA K+ S +F+LCI+LENK + V AG + +KI S VDELL++LA++
Sbjct: 300 DLIEEGDLLATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVDELLSLLALI 359
Query: 364 SSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC--FTDRTRTREIMEEEN 421
S+H A+EE+ +LG I L I+R+ + EN I++N+ DR+R + + EEEN
Sbjct: 360 STHNRAVEEMDKLGFIYDLFSILRKPSSLLTGENAVVIVFNMYDRNRDRSRLKVVGEEEN 419
Query: 422 ANGTLSRLAENGTSRAKRKANGILERLNK 450
+GT ++LA+ G+ RA RKA GIL+ + +
Sbjct: 420 QHGTFTKLAKQGSVRAARKAQGILQWIKR 448
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 167/382 (43%), Positives = 249/382 (65%), Gaps = 14/382 (3%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
+P EFRCPIS E+M DPV++++GQT++R CIQ+WLD G++TCP+T+Q LSHT L PN ++
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287
Query: 136 REMISQWCKEHGIELPKPIKDTDEDVV---TDASRSHLNSLLEKMSSSLSD-QKEAAKEL 191
+ +ISQWC+ +GIELPK +++ + +D + L SL+ ++ S D Q+ AA E+
Sbjct: 288 KSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEI 347
Query: 192 RLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLV 251
RLL KR R E+ AIPLL++ LS +DP E +T +LNLSIH+ NK +
Sbjct: 348 RLLAKRNVNNRICIAEA-GAIPLLVNLLS----SSDPRTQEHAVTALLNLSIHENNKASI 402
Query: 252 AENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP 311
++ AIP +++ ++TG++ETR NAAA LFSLS +D NK+ IG GA+ PLI+LL +G P
Sbjct: 403 VDS-HAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSP 461
Query: 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILAMLSSHQDA 369
KD A+AIF+LCI NK RAV AG V ++ +++ ++DE L++L++L+ + +
Sbjct: 462 RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEG 521
Query: 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRL 429
I IP L+ +I+ + RN+EN AAIL+ +C D +T + L L
Sbjct: 522 KIVIARSEPIPPLVEVIKTGS-PRNRENAAAILWLLCSADTEQTLA-AKAAGVEDALKEL 579
Query: 430 AENGTSRAKRKANGILERLNKA 451
+E GT RAKRKA+ ILE +++A
Sbjct: 580 SETGTDRAKRKASSILELMHQA 601
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/409 (41%), Positives = 246/409 (60%), Gaps = 16/409 (3%)
Query: 52 LKDLKLKKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD 111
L D L+ S D +L P EFRCPIS E+MTDPV++++GQT++R CI++WL+
Sbjct: 232 LDDAPLRLKSSLPKSRDDDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLE 291
Query: 112 EGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIELPK-------PIKDTDEDVVTD 164
G+ TCP+T++ L+ ++ PN+++R +I+QWC+ +GIE PK K + D
Sbjct: 292 GGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPD 351
Query: 165 ASRSHLNSLLEKMSSSL-SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGR 223
+ + LL K++S D++ AA E+RLL K+ R S AIPLL++ L+
Sbjct: 352 DEHNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASG-AIPLLVNLLT--- 407
Query: 224 ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSL 283
D E +T+ILNLSI ENK + + A+P ++ ++ G++E R NAAA LFSL
Sbjct: 408 ISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSL 467
Query: 284 SALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVI 343
S +D NK+ IG GA+ PL+ LL EG KD A+A+F+LCI NK +AV AG V V+
Sbjct: 468 SVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVL 527
Query: 344 LRKIM--ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401
+R + E+ +VDE L+ILA+LSSH D E+G A+P L+ IR S RNKEN AA+
Sbjct: 528 MRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIR-SGSPRNKENSAAV 586
Query: 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450
L ++C ++ E ++ L +AENGT R KRKA +L R ++
Sbjct: 587 LVHLCSWNQQHLIE-AQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSR 634
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 162/386 (41%), Positives = 238/386 (61%), Gaps = 19/386 (4%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
+P +FRCPIS E+M DPV++++GQT++R CI++W++ G+ TCP+T+Q L+ T L PN+++
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVL 315
Query: 136 REMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLS-----DQKEAAKE 190
R +I+QWC+ + IE PKP V+ S + +E + L+ DQ+ AA E
Sbjct: 316 RSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGE 375
Query: 191 LRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL 250
+RLL KR R E+ AIPLL+ LS D + E +T +LNLSI + NK
Sbjct: 376 IRLLAKRNADNRVAIAEA-GAIPLLVGLLS----TPDSRIQEHSVTALLNLSICENNKGA 430
Query: 251 VAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGH 310
+ + AIP ++ ++ G++E R NAAA LFSLS +D NK+ IG LGA+ PL+ LL EG
Sbjct: 431 IV-SAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGT 489
Query: 311 PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILAMLSSHQD 368
KD A+A+F+LCI NK +A+ AG + + R + E + +VDE LAILA+LSSH +
Sbjct: 490 QRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPE 549
Query: 369 AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENAN--GTL 426
IG A+P L+ IR + RN+EN AA+L ++C D + ++E + G L
Sbjct: 550 GKAIIGSSDAVPSLVEFIRTGS-PRNRENAAAVLVHLCSGD---PQHLVEAQKLGLMGPL 605
Query: 427 SRLAENGTSRAKRKANGILERLNKAA 452
LA NGT R KRKA +LER+++ A
Sbjct: 606 IDLAGNGTDRGKRKAAQLLERISRLA 631
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 47 OS=Arabidopsis thaliana GN=PUB47 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 177/446 (39%), Positives = 255/446 (57%), Gaps = 33/446 (7%)
Query: 19 LKKELQRLVKAILDEDDYGGLQ--VTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLGL 76
L +EL +++ I D GG +EA+R+L+CL+ ++ K P S D + +
Sbjct: 15 LWRELHKVLPEIWY--DGGGKDHCEIDEAIRILTCLRKIESKNPES-------DISPVEV 65
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P EF C +S +IM +P+++A+GQTF++ I WL + RTCP+T+QVL H +IPNHL+
Sbjct: 66 PKEFICTLSNKIMIEPMLIASGQTFEKSYILEWL-KHERTCPRTKQVLYHRFMIPNHLIN 124
Query: 137 EMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS--SLSDQKEAAKELRLL 194
E+I +WC H + PK D V D L SLL+++SS S+ DQ EAAKEL L
Sbjct: 125 EVIKEWCLIHNFDRPKT-----SDEVIDLFTGDLESLLQRISSPSSVEDQTEAAKELALK 179
Query: 195 TKRMPLFRALF-GESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAE 253
KR F + D+I LL+PLS D++P LE+++T + S ++NK LVAE
Sbjct: 180 AKRFSSVCVYFVAKIPDSITRLLTPLSISE-DSNPEFLENIVTALHIFSTSEKNKTLVAE 238
Query: 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLA 313
NPL +PLL ++ GT+ TR ++AA + SLS DSNK+IIG + LI ++EEG LA
Sbjct: 239 NPLVLPLLAKYMKQGTVLTRIHSAATVNSLSYTDSNKIIIGNSEVLKALIHVIEEGDSLA 298
Query: 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS--HQDAIE 371
+ SA+ +LC + E +AV G +R ++KI S V LL++LA +S+ HQ E
Sbjct: 299 TSEAFSALSNLCPVKEISEKAVSEGLIRAAIKKIKAGSNVSMLLSLLAFVSTQNHQ-TTE 357
Query: 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD--------RTRTRE-IMEEENA 422
E+ LG I L I+R S N EN I+YNIC + R R+ ++EEEN
Sbjct: 358 EMDNLGLIYDLFSILRNSNSLVNDENAVVIVYNICKSYKALQNVVLREEKRDVVLEEENK 417
Query: 423 NGTLSRLAENGTSRAKRKANGILERL 448
+GT +RL RA A ILE +
Sbjct: 418 HGTFTRLENQEAGRATSLAKRILEWI 443
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 237/382 (62%), Gaps = 14/382 (3%)
Query: 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNH 133
L +P +F CP+S E+M DPV++A GQT++R IQRW+D GN TCP+T+Q L + L PN+
Sbjct: 239 LTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNY 298
Query: 134 LVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS-SLSDQKEAAKELR 192
++R +IS+WC EH IE +P + S + +L++++SS S D++ A E+R
Sbjct: 299 VLRSLISRWCAEHNIE--QPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIR 356
Query: 193 LLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVA 252
L+KR R L E+ AIP+L++ L+ D E+ IT +LNLSI++ NK L+
Sbjct: 357 SLSKRSTDNRILIAEA-GAIPVLVNLLTS----EDVATQENAITCVLNLSIYENNKELIM 411
Query: 253 ENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPL 312
A+ ++ +R GT+E R NAAA LFSLS D NK+IIG GA+ L+DLLE G P
Sbjct: 412 FAG-AVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPR 470
Query: 313 AMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS---LVDELLAILAMLSSHQDA 369
KD A+A+F+LCI NK RAV AG V +++ + +++ +VDE L IL++L+++QDA
Sbjct: 471 GKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDA 530
Query: 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRL 429
I + +P L+ I+ ++ RN+EN AAIL ++C D T + A L L
Sbjct: 531 KSAIVKANTLPALIGIL-QTDQTRNRENAAAILLSLCKRD-TEKLITIGRLGAVVPLMDL 588
Query: 430 AENGTSRAKRKANGILERLNKA 451
++NGT R KRKA +LE L KA
Sbjct: 589 SKNGTERGKRKAISLLELLRKA 610
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/383 (43%), Positives = 237/383 (61%), Gaps = 16/383 (4%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
+P FRCPIS E+M DPV+++ GQT++R IQ+WLD G++TCP++++ L H L PN+++
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307
Query: 136 REMISQWCKEHGIELPKPIKDTDEDVV-----TDASRSHLNSLLEKMSSSLSDQKEAAK- 189
+ +I+ WC+ +GIELP+ + +D R+ + SLLEK+++ ++Q+ AA
Sbjct: 308 KSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAG 367
Query: 190 ELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR 249
ELRLL KR R E+ AIPLL+ LS DP E +T +LNLSI++ NK
Sbjct: 368 ELRLLAKRNVDNRVCIAEA-GAIPLLVELLS----SPDPRTQEHSVTALLNLSINEGNKG 422
Query: 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG 309
+ + AI +++ ++ G++E R NAAA LFSLS +D NK+ IG GA+ LI LLEEG
Sbjct: 423 AIVDAG-AITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEG 481
Query: 310 HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILR--KIMENSLVDELLAILAMLSSHQ 367
KD A+AIF+LCI NK RAV G V + R K +VDE LAILA+LS++Q
Sbjct: 482 TRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQ 541
Query: 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLS 427
+ I E +IP L+ IIR + RN+EN AAIL+ +C + R + E A+ L
Sbjct: 542 EGKTAIAEAESIPVLVEIIRTGS-PRNRENAAAILWYLCIGNIERLN-VAREVGADVALK 599
Query: 428 RLAENGTSRAKRKANGILERLNK 450
L ENGT RAKRKA +LE + +
Sbjct: 600 ELTENGTDRAKRKAASLLELIQQ 622
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 239/390 (61%), Gaps = 17/390 (4%)
Query: 69 GDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128
GD + +P EFRCPIS E+M DPV+++ GQT++R CI++W+ G+ TCP T+Q +S +
Sbjct: 266 GDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSA 325
Query: 129 LIPNHLVREMISQWCKEHGIELPK----PIKDTDEDVVTDASRSHLNSLLEKM-SSSLSD 183
L PN+++R +ISQWC+ +G+E PK P K T + + R+++++LL K+ S +
Sbjct: 326 LTPNYVLRSLISQWCETNGMEPPKRSTQPNKPT--PACSSSERANIDALLSKLCSPDTEE 383
Query: 184 QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243
Q+ AA ELRLL KR R E+ AIPLLLS LS T E +T +LNLSI
Sbjct: 384 QRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLRTQ----EHAVTALLNLSI 438
Query: 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLI 303
H++NK + + A+P ++ ++ G++E R NAAA LFSLS +D K+ IG +GA+ L+
Sbjct: 439 HEDNKASIISSG-AVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALV 497
Query: 304 DLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILA 361
LL EG KD A+A+F+LCI NK RA+ AG V +I+ + +L+DE +AIL+
Sbjct: 498 VLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILS 557
Query: 362 MLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE- 420
+LSSH + IG +P L+ +I T RN+EN AA++ ++C + +E
Sbjct: 558 ILSSHPEGKAAIGAAEPVPVLVEMIGSGT-PRNRENAAAVMLHLCSGEHHLVHLARAQEC 616
Query: 421 NANGTLSRLAENGTSRAKRKANGILERLNK 450
L LA NGT R KRKA +LER+++
Sbjct: 617 GIMVPLRELALNGTDRGKRKAVQLLERMSR 646
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 239/390 (61%), Gaps = 17/390 (4%)
Query: 69 GDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128
GD + +P EFRCPIS E+M DPV+++ GQT++R CI++W+ G+ TCP T+Q +S +
Sbjct: 266 GDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSA 325
Query: 129 LIPNHLVREMISQWCKEHGIELPK----PIKDTDEDVVTDASRSHLNSLLEKM-SSSLSD 183
L PN+++R +ISQWC+ +G+E PK P K T + + R+++++LL K+ S +
Sbjct: 326 LTPNYVLRSLISQWCETNGMEPPKRSTQPNKPT--PACSSSERANIDALLSKLCSPDTEE 383
Query: 184 QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243
Q+ AA ELRLL KR R E+ AIPLLLS LS T E +T +LNLSI
Sbjct: 384 QRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLRTQ----EHAVTALLNLSI 438
Query: 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLI 303
H++NK + + A+P ++ ++ G++E R NAAA LFSLS +D K+ IG +GA+ L+
Sbjct: 439 HEDNKASIISSG-AVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALV 497
Query: 304 DLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILA 361
LL EG KD A+A+F+LCI NK RA+ AG V +I+ + +L+DE +AIL+
Sbjct: 498 VLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILS 557
Query: 362 MLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE- 420
+LSSH + IG +P L+ +I T RN+EN AA++ ++C + +E
Sbjct: 558 ILSSHPEGKAAIGAAEPVPVLVEMIGSGT-PRNRENAAAVMLHLCSGEHHLVHLARAQEC 616
Query: 421 NANGTLSRLAENGTSRAKRKANGILERLNK 450
L LA NGT R KRKA +LER+++
Sbjct: 617 GIMVPLRELALNGTDRGKRKAVQLLERMSR 646
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 224118828 | 450 | predicted protein [Populus trichocarpa] | 0.980 | 0.997 | 0.749 | 0.0 | |
| 225430672 | 455 | PREDICTED: U-box domain-containing prote | 0.989 | 0.995 | 0.713 | 0.0 | |
| 224110422 | 449 | predicted protein [Populus trichocarpa] | 0.975 | 0.995 | 0.681 | 1e-170 | |
| 224123650 | 436 | predicted protein [Populus trichocarpa] | 0.945 | 0.993 | 0.693 | 1e-169 | |
| 225469211 | 449 | PREDICTED: U-box domain-containing prote | 0.980 | 1.0 | 0.637 | 1e-164 | |
| 224110418 | 436 | predicted protein [Populus trichocarpa] | 0.945 | 0.993 | 0.695 | 1e-162 | |
| 255585624 | 456 | Spotted leaf protein, putative [Ricinus | 0.989 | 0.993 | 0.629 | 1e-160 | |
| 224065423 | 456 | predicted protein [Populus trichocarpa] | 0.958 | 0.962 | 0.630 | 1e-157 | |
| 449453296 | 461 | PREDICTED: U-box domain-containing prote | 0.991 | 0.984 | 0.608 | 1e-153 | |
| 356504135 | 430 | PREDICTED: U-box domain-containing prote | 0.934 | 0.995 | 0.646 | 1e-152 |
| >gi|224118828|ref|XP_002331359.1| predicted protein [Populus trichocarpa] gi|222874397|gb|EEF11528.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/459 (74%), Positives = 388/459 (84%), Gaps = 10/459 (2%)
Query: 1 MANPEVEETESC-VRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKK 59
MA V ET C V KA ELKKEL++LVKAILDE+DY ++VT+EA+RVLS LK+LK KK
Sbjct: 1 MAKSGVLETIPCTVTKATELKKELEKLVKAILDEEDYR-VEVTDEAMRVLSVLKELKFKK 59
Query: 60 PHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
S K DD +L P EF+CPIS EIM DPVVLA GQT+D P IQRWL+EG+RTCPQ
Sbjct: 60 --SLK---IVDDTVL--PEEFKCPISREIMGDPVVLATGQTYDLPFIQRWLNEGHRTCPQ 112
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS 179
T+QVLSHT+L PNHLVREMISQWCKE GIELP+P+KD DE V TDA R HL SLLEKMSS
Sbjct: 113 TQQVLSHTILTPNHLVREMISQWCKERGIELPRPVKDVDE-VRTDADRGHLKSLLEKMSS 171
Query: 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTIL 239
SLSDQKEAAKELRLLTKRMP FRALF +STDAIP LL+PLSPGRA+T P L EDLITT+L
Sbjct: 172 SLSDQKEAAKELRLLTKRMPSFRALFSDSTDAIPKLLNPLSPGRANTHPDLQEDLITTVL 231
Query: 240 NLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAM 299
NLSIHD NKRL AENPL IPLL++SV++GTIETR NAAAA+FSLSALDSNKLIIGK GA+
Sbjct: 232 NLSIHDNNKRLAAENPLVIPLLVESVKSGTIETRSNAAAAIFSLSALDSNKLIIGKSGAL 291
Query: 300 TPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAI 359
PLIDLLEEGHPLAMKD ASAIF+LC++LENK RAV GAVRVIL+KIM+ VDELLAI
Sbjct: 292 KPLIDLLEEGHPLAMKDAASAIFNLCLVLENKGRAVREGAVRVILKKIMDCIFVDELLAI 351
Query: 360 LAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEE 419
LAML+SHQ A+EE+GELGA+ CLL IIRES+ ERNKENC AIL+ IC D ++ R+I EE
Sbjct: 352 LAMLASHQKAVEEMGELGAVHCLLGIIRESSSERNKENCVAILHTICLNDYSKWRDIREE 411
Query: 420 ENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
ENANGTLSRLAE+GTSRAKRKAN ILERLN+AA + HTA
Sbjct: 412 ENANGTLSRLAESGTSRAKRKANSILERLNRAASLTHTA 450
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430672|ref|XP_002270882.1| PREDICTED: U-box domain-containing protein 9 [Vitis vinifera] gi|296085175|emb|CBI28670.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/460 (71%), Positives = 382/460 (83%), Gaps = 7/460 (1%)
Query: 1 MANPEVEETE-SCVRKAVE-LKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLK 58
MA V ET+ S KA E LKKELQRLV I+DED+ T++AL++L L+D K K
Sbjct: 1 MAKFGVLETDPSMAAKATEELKKELQRLVSRIVDEDESCA-DTTDKALKILFALRDFKFK 59
Query: 59 KPHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCP 118
F G ++ LP EFRCPIS ++M DPVV+A GQT+DRP IQ+WL +G+RTCP
Sbjct: 60 GSLDF--GVETENP--ALPQEFRCPISKQLMRDPVVVATGQTYDRPFIQKWLKDGHRTCP 115
Query: 119 QTRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178
+T+QVLSHT+L PN+LVREMIS+WCKEHGIELPKP++D DE+V+TDA R HLNSLLE+MS
Sbjct: 116 RTQQVLSHTILTPNNLVREMISEWCKEHGIELPKPVEDVDEEVITDADRGHLNSLLERMS 175
Query: 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTI 238
SS SDQKEAA+ELRLLTKRMP FRALFGE TDA+P LLSPLSP D DP L EDLITT+
Sbjct: 176 SSASDQKEAARELRLLTKRMPSFRALFGECTDAVPQLLSPLSPDAVDVDPELQEDLITTV 235
Query: 239 LNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGA 298
LNLSIHD NK+LVAE+P+AIP+LI+S+++GTIETR NAAAALF+LSALDSNKLIIGK GA
Sbjct: 236 LNLSIHDNNKKLVAEDPMAIPVLIESLKSGTIETRTNAAAALFTLSALDSNKLIIGKSGA 295
Query: 299 MTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLA 358
+ PL+DLLEEGHPLAMKDVASAIF+LCI+LENK RAVH GAV VIL+KIM+ LVDELLA
Sbjct: 296 LKPLLDLLEEGHPLAMKDVASAIFNLCIVLENKGRAVHDGAVTVILKKIMDGILVDELLA 355
Query: 359 ILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIME 418
ILAMLSSHQ A+EE+GELGA+PCLLRIIRES CERNKENC AIL+ +CF DR + R I E
Sbjct: 356 ILAMLSSHQRAVEEMGELGAVPCLLRIIRESKCERNKENCIAILHTVCFNDRAKLRAIRE 415
Query: 419 EENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
EEN GT+SRLA+ GTSRAKRKANGILERLN+ ALI HTA
Sbjct: 416 EENDYGTISRLAQTGTSRAKRKANGILERLNRVALITHTA 455
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110422|ref|XP_002333089.1| predicted protein [Populus trichocarpa] gi|222834855|gb|EEE73304.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust.
Identities = 312/458 (68%), Positives = 368/458 (80%), Gaps = 11/458 (2%)
Query: 1 MANPEVEET-ESCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKK 59
MA V ET + + K ELKKEL++LV+ IL E+DY ++VT+EA+R+LS LK+LK KK
Sbjct: 1 MAEAGVLETMQRTMTKETELKKELEKLVQTILVEEDYR-VEVTDEAMRILSVLKELKFKK 59
Query: 60 PHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
+P EF CPIS +IM DPVVLA GQT+DRP IQR L+EG+RTCPQ
Sbjct: 60 SSKVVDNTV-------IPEEFICPISKKIMNDPVVLATGQTYDRPFIQRLLNEGHRTCPQ 112
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS 179
T+QV+SHT L PNHLV+EMIS+W KE GIELPKP+ D+DV TDA R +L SLLEKMSS
Sbjct: 113 TQQVISHTFLTPNHLVQEMISKWRKERGIELPKPL--VDDDVHTDADRVYLKSLLEKMSS 170
Query: 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTIL 239
SLSDQKEAAKELRL+TK+ P FRALF +STDAIP LL+PLSPGRA+T P L EDLITTI
Sbjct: 171 SLSDQKEAAKELRLITKKKPSFRALFSDSTDAIPQLLNPLSPGRANTHPDLQEDLITTIF 230
Query: 240 NLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAM 299
NLSIH+ NK+L AENP IPLL++SVR+GTIETR NAAAALFSLS+LDSNKLIIGK GA+
Sbjct: 231 NLSIHENNKQLFAENPHVIPLLVESVRSGTIETRSNAAAALFSLSSLDSNKLIIGKAGAL 290
Query: 300 TPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAI 359
PLI LLEEGHP AMKD A AIF+LC++LENK RAV GAVRVIL+KIM+ LVDELLA
Sbjct: 291 NPLIGLLEEGHPPAMKDAALAIFNLCLVLENKVRAVQEGAVRVILKKIMDCILVDELLAT 350
Query: 360 LAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEE 419
LA+L+S Q+A++E+G LGA+PCL+ IIRES+ ERNKENCAAIL+ IC DRT+ R +MEE
Sbjct: 351 LAILTSQQEAVQEMGLLGAVPCLIDIIRESSSERNKENCAAILHTICLNDRTKWRAVMEE 410
Query: 420 ENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHT 457
E AN TLS LAE+GTSRAKRKANGIL+ LN+AA I HT
Sbjct: 411 EKANATLSILAEHGTSRAKRKANGILKILNRAASITHT 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123650|ref|XP_002319132.1| predicted protein [Populus trichocarpa] gi|222857508|gb|EEE95055.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 307/443 (69%), Positives = 361/443 (81%), Gaps = 10/443 (2%)
Query: 15 KAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLL 74
K ELKKEL++LV+ IL E+DY ++VT+EA+R+LS LK+LK KK
Sbjct: 3 KETELKKELEKLVQTILVEEDYR-VEVTDEAMRILSVLKELKFKKSSKVVDNTV------ 55
Query: 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHL 134
+P EF CPIS +IM DPVVLA GQT+DRP IQR L+EG+RTCPQT+QV+SHT L PNHL
Sbjct: 56 -IPEEFICPISKKIMNDPVVLATGQTYDRPFIQRLLNEGHRTCPQTQQVISHTFLTPNHL 114
Query: 135 VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLL 194
V+EMIS+W +E GIELPKP+ D+DV TDA R +L SLLEKMSSSLSDQKEAAKELRL+
Sbjct: 115 VQEMISKWRRERGIELPKPL--VDDDVHTDADRVYLKSLLEKMSSSLSDQKEAAKELRLI 172
Query: 195 TKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAEN 254
TK+ P FRALF +STDAIP LL+PLSPGRA+T P L EDLITTI NLSIH+ NK+L AEN
Sbjct: 173 TKKKPSFRALFSDSTDAIPQLLNPLSPGRANTHPDLQEDLITTIFNLSIHENNKQLFAEN 232
Query: 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAM 314
P IPLL++SVR+GTIETR NAAAALFSLS+LDSNKLIIGK GA+ PLI LLEEGHP AM
Sbjct: 233 PHVIPLLVESVRSGTIETRSNAAAALFSLSSLDSNKLIIGKAGALKPLIGLLEEGHPPAM 292
Query: 315 KDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIG 374
KD A AIF+LC++LENK RAV GAVRVIL+KIM+ LVDELLA LA+L+S Q+A+EE+G
Sbjct: 293 KDAALAIFNLCLVLENKARAVQEGAVRVILKKIMDCILVDELLATLAILTSQQEAVEEMG 352
Query: 375 ELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT 434
LGA+PCL+ IIRES+ ERNKENCAAIL+ IC DRT+ R +MEEE AN TLS LAE+GT
Sbjct: 353 LLGAVPCLIDIIRESSSERNKENCAAILHTICLNDRTKWRAVMEEEKANATLSILAEHGT 412
Query: 435 SRAKRKANGILERLNKAALIVHT 457
SRAKRKANGIL+ LN+AA I HT
Sbjct: 413 SRAKRKANGILKILNRAASITHT 435
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225469211|ref|XP_002263607.1| PREDICTED: U-box domain-containing protein 9 [Vitis vinifera] gi|296083515|emb|CBI23501.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/458 (63%), Positives = 356/458 (77%), Gaps = 9/458 (1%)
Query: 1 MANPEVEETESCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKP 60
MA V ET+ + ELKKELQRLVK+I+++DDY ++V + A L +KDLK+K+
Sbjct: 1 MAKTGVLETDP---RVAELKKELQRLVKSIVEDDDYS-VEVMDRAREALCSIKDLKVKRS 56
Query: 61 HSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQT 120
S K P EFRCP+S E+M DPV+LA GQT+DRP IQ+WL GNRTCP T
Sbjct: 57 MSLKLHGPH-----SFPEEFRCPLSREMMRDPVILATGQTYDRPFIQKWLKAGNRTCPLT 111
Query: 121 RQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSS 180
+QVLSHT+L PNHL+REMISQWC+ HGIEL P + ++ED + DA RS LLEKMSSS
Sbjct: 112 QQVLSHTMLTPNHLIREMISQWCQSHGIELTDPDQYSNEDQIMDADRSRFIDLLEKMSSS 171
Query: 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILN 240
+QKEAAKELRLLTKRMP FRALFGES DAIP LL+P S + P L EDLITT+LN
Sbjct: 172 ALEQKEAAKELRLLTKRMPSFRALFGESLDAIPQLLNPFSQNKGGIHPDLQEDLITTLLN 231
Query: 241 LSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMT 300
LSIHD NK+LVAE P+ IPLL+D++++GTIETR NAAA +F+LSALDSNK +IGK G +
Sbjct: 232 LSIHDNNKKLVAETPMVIPLLMDALKSGTIETRSNAAATIFTLSALDSNKALIGKSGVLK 291
Query: 301 PLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAIL 360
PLIDLLEEGHP MKDVASAIF+LCI+ ENK RAVH GAV+V+++KIM + VDELLAIL
Sbjct: 292 PLIDLLEEGHPSVMKDVASAIFNLCIIHENKSRAVHEGAVKVLMKKIMNQTHVDELLAIL 351
Query: 361 AMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE 420
AMLS+HQ AIEE+G+LGA+ CLL IIRES+C+RNKENC AIL+++C DRT+ RE+ EEE
Sbjct: 352 AMLSTHQKAIEEMGDLGAVSCLLTIIRESSCDRNKENCIAILHSVCLNDRTKLRELREEE 411
Query: 421 NANGTLSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
N T+S+L++ GT+RAKRKANGILERL +A I HTA
Sbjct: 412 NTYRTISKLSQTGTARAKRKANGILERLRRALNITHTA 449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110418|ref|XP_002333088.1| predicted protein [Populus trichocarpa] gi|222834854|gb|EEE73303.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 308/443 (69%), Positives = 359/443 (81%), Gaps = 10/443 (2%)
Query: 15 KAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLL 74
K ELKKEL++LVK IL E+DY ++VT+EA+R+LS LK+LK KK
Sbjct: 3 KETELKKELEKLVKTILVEEDYR-VEVTDEAMRILSVLKELKFKKSSKVVDNTV------ 55
Query: 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHL 134
+P EF CPIS +IM DPVVLA GQT+DRP IQR L+EG+RTCPQT+QV+SHT L PNHL
Sbjct: 56 -IPEEFICPISKKIMNDPVVLATGQTYDRPFIQRLLNEGHRTCPQTQQVISHTFLTPNHL 114
Query: 135 VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLL 194
V+EMIS+WC E GIELPKP+ D+DV TDA R +L SLLEK SSSLSDQKEAAKELR L
Sbjct: 115 VQEMISKWCMERGIELPKPL--VDDDVHTDADRVYLKSLLEKTSSSLSDQKEAAKELRRL 172
Query: 195 TKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAEN 254
TK MP FRALF +STDAIP LL+PLSPGRA+T P L EDLITTI NLSIH+ NK+L AEN
Sbjct: 173 TKSMPSFRALFSDSTDAIPQLLNPLSPGRANTHPDLQEDLITTIFNLSIHENNKQLFAEN 232
Query: 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAM 314
P IPLL++SVR+GTIETRRNAAAALFSLSALDSNKLIIGK GA+ PLI LLEEGHP AM
Sbjct: 233 PHVIPLLVESVRSGTIETRRNAAAALFSLSALDSNKLIIGKSGALKPLIGLLEEGHPPAM 292
Query: 315 KDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIG 374
KD A AIF LC++LEN+ RAV GAVRVIL+KIM+ LVDELLA LA+L+S Q+A++E+G
Sbjct: 293 KDAALAIFKLCLVLENRVRAVQEGAVRVILKKIMDCILVDELLATLAILTSQQEAVQEMG 352
Query: 375 ELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT 434
LGA+PCL+ IIR+S+ ERNKENCAAIL+ IC DRT+ R +MEEE AN TLS LAE+GT
Sbjct: 353 LLGAVPCLIDIIRDSSSERNKENCAAILHTICLNDRTKWRAVMEEEKANATLSILAEHGT 412
Query: 435 SRAKRKANGILERLNKAALIVHT 457
SRAKRKANGIL+ LN AA I+HT
Sbjct: 413 SRAKRKANGILKILNGAASIIHT 435
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585624|ref|XP_002533499.1| Spotted leaf protein, putative [Ricinus communis] gi|223526643|gb|EEF28886.1| Spotted leaf protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 290/461 (62%), Positives = 358/461 (77%), Gaps = 8/461 (1%)
Query: 1 MANPEVEETESCV-RKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKK 59
MA V +++ V KA ELKKELQ+ VK+I+D+DDY ++ ++A L L+DLK+KK
Sbjct: 1 MAKTGVFDSDPVVMSKATELKKELQKFVKSIVDDDDYR-IETIDQAKETLCALRDLKIKK 59
Query: 60 PHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
+ + + P EF+CP+S E+M DPV+LA GQT+DRP IQ+WL GNRTCP
Sbjct: 60 ----RSLSLKLRETVSCPDEFKCPLSKELMKDPVILATGQTYDRPFIQKWLRAGNRTCPL 115
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS 179
T+QVLSHTVL PNHL+REMISQWCK G+ELP P++ + + +T+A R SL+ KMSS
Sbjct: 116 TQQVLSHTVLTPNHLIREMISQWCKNQGLELPDPVRQGNGEGITEAERDQFLSLVGKMSS 175
Query: 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPL--SPGRADTDPGLLEDLITT 237
L +Q+ AAKELR LTKRMP FRALFGES DAIP LL+PL S ++ L ED+ITT
Sbjct: 176 ELPEQRAAAKELRRLTKRMPSFRALFGESVDAIPQLLNPLLASKSASEVQADLQEDVITT 235
Query: 238 ILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLG 297
+LNLSIHD NK+LVAE P IPLLI+++R+GTI+TR NAAAALF+LSALDSNK +IGK G
Sbjct: 236 LLNLSIHDNNKKLVAETPAVIPLLIEALRSGTIDTRTNAAAALFTLSALDSNKSLIGKSG 295
Query: 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELL 357
A+ PLIDLLEEGHPLAMKDVASAIF+LC + ENK RAV GAVRV+L+KIM+ LVDELL
Sbjct: 296 ALKPLIDLLEEGHPLAMKDVASAIFTLCFVHENKARAVRDGAVRVLLKKIMDGMLVDELL 355
Query: 358 AILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM 417
A+LA+LSSH AIEE+GELGA+PCLLRIIRE++CERNKENC AIL+ IC DRT+ + +
Sbjct: 356 AMLAILSSHHKAIEEMGELGAVPCLLRIIRENSCERNKENCIAILHTICSNDRTKWKTVR 415
Query: 418 EEENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
EEENA GT+S+LA GTSRAKRKANGILE+LN+ + HTA
Sbjct: 416 EEENAYGTISKLAREGTSRAKRKANGILEKLNRIVNLTHTA 456
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065423|ref|XP_002301810.1| predicted protein [Populus trichocarpa] gi|222843536|gb|EEE81083.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 281/446 (63%), Positives = 354/446 (79%), Gaps = 7/446 (1%)
Query: 15 KAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLL 74
KA+ELKKELQ+LV+ I+D++DY ++ ++A L LK LK+K+ + + +
Sbjct: 16 KAMELKKELQKLVRNIVDDEDYRT-ELIDQARETLFALKGLKVKR----RSSSLKLRETV 70
Query: 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHL 134
P EF+CP+S E+M DPVVLA GQT+DRP IQ+WL GNRTCP T+QVLSHT+L PN L
Sbjct: 71 LCPEEFKCPLSKELMRDPVVLATGQTYDRPFIQKWLKAGNRTCPLTQQVLSHTILTPNLL 130
Query: 135 VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLL 194
+REMISQWCK G+ELP ++ +ED +T+A R H SLLEKMS +L +QK+AA+ELRLL
Sbjct: 131 IREMISQWCKSQGLELPDLSQNVNEDGITEADRDHFLSLLEKMSLTLPEQKDAARELRLL 190
Query: 195 TKRMPLFRALFGESTDAIPLLLSPLSPGRADTD--PGLLEDLITTILNLSIHDENKRLVA 252
TKRMP FRALF ES +AIP LL PLS G++ + P L ED+ITT+LNLSIHD NK+LVA
Sbjct: 191 TKRMPSFRALFSESLEAIPQLLRPLSEGKSGSSMYPDLQEDIITTLLNLSIHDNNKKLVA 250
Query: 253 ENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPL 312
E P+ IPLL++++R+G+IETR NAAAALF+LSALDSNK +IGK GA+ PLIDLLEEGHP
Sbjct: 251 ETPMVIPLLMEALRSGSIETRTNAAAALFTLSALDSNKTLIGKSGALKPLIDLLEEGHPS 310
Query: 313 AMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEE 372
AMKDVASAIF+LCI+ ENK RAV GA++VIL KIM VDELLAILA+L+SHQ +EE
Sbjct: 311 AMKDVASAIFNLCIIHENKARAVRDGALKVILTKIMNGMHVDELLAILAVLASHQKVVEE 370
Query: 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432
+G+ GA+PCLLRIIRESTC+RNKENC AIL+ IC DRT+ + + +EE++ GT+S+LA +
Sbjct: 371 LGDSGAVPCLLRIIRESTCDRNKENCIAILHTICLNDRTKWKVMRDEESSYGTISKLARH 430
Query: 433 GTSRAKRKANGILERLNKAALIVHTA 458
GTSRAKRKANGILERLN+A + HTA
Sbjct: 431 GTSRAKRKANGILERLNRAVNLTHTA 456
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453296|ref|XP_004144394.1| PREDICTED: U-box domain-containing protein 9-like [Cucumis sativus] gi|449506075|ref|XP_004162645.1| PREDICTED: U-box domain-containing protein 9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/465 (60%), Positives = 356/465 (76%), Gaps = 11/465 (2%)
Query: 1 MANPEVEETE-SCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKK 59
MA V +++ + + K +LKKELQ L+ AI+D+D+Y + N A+ +LS LKDLKL+K
Sbjct: 1 MAKTGVFDSDPTLIGKPTDLKKELQTLILAIIDDDNYSTDTIDN-AIHILSALKDLKLRK 59
Query: 60 PHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
++ H L P EFRCP+S E+M DPV+L+ G+T+DRP IQ+WL+ GNRTCP+
Sbjct: 60 R---SRSSSNLFHNLISPQEFRCPLSRELMRDPVILSTGETYDRPFIQKWLNSGNRTCPR 116
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIK--DTDEDVVTDASRSHLNSLLEKM 177
T+QVLSHT L PNHL+REMISQWC GIEL ++ D+DV+T+A R LLEKM
Sbjct: 117 TQQVLSHTNLTPNHLIREMISQWCATRGIELQDRVRVHYLDDDVITEADRDRFLMLLEKM 176
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPG----LLED 233
S ++S+QKEAAKELR+LTKRMP FRALFGES DAI LLLSPL ++ + L ED
Sbjct: 177 SLTVSEQKEAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSSSIHTDLQED 236
Query: 234 LITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLII 293
+ITT+LNLSIHD NK+LVAE P AIPLL++++R+GT+ETR NAAAALF+LSALD NK II
Sbjct: 237 VITTLLNLSIHDNNKKLVAETPYAIPLLMEALRSGTMETRSNAAAALFTLSALDPNKTII 296
Query: 294 GKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLV 353
GK GA+ PLI+LL+ GHPL++KD ASAIF+LCIL ENK RAV GAVRV+L+KIM V
Sbjct: 297 GKAGALKPLIELLDLGHPLSIKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMSQMHV 356
Query: 354 DELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413
DELLAILAMLS HQ AIEEIGELGA+P LLRIIRES+C RNKENC I++++C DRT+
Sbjct: 357 DELLAILAMLSCHQRAIEEIGELGAVPFLLRIIRESSCSRNKENCIVIIHSVCLYDRTKW 416
Query: 414 REIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
+++ EEE T+S LA+NGTSRAKRKA+GILER+N+ + HTA
Sbjct: 417 KDMREEEKCYRTISELAQNGTSRAKRKASGILERINRVVNMTHTA 461
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504135|ref|XP_003520854.1| PREDICTED: U-box domain-containing protein 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/444 (64%), Positives = 351/444 (79%), Gaps = 16/444 (3%)
Query: 16 AVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLG 75
A ELK++L+ LVKAI+D DDY LQ +EA+ LS LK LK P F
Sbjct: 2 ASELKEKLRELVKAIVDSDDYS-LQAADEAIATLSSLK--HLKSPDDFP----------- 47
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
LP +FRCPIS ++M+DPV+L+ GQT+DRP IQRWL+EG+RTCPQT+QVLSHT+L PN+LV
Sbjct: 48 LPPQFRCPISTQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLV 107
Query: 136 REMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLLT 195
R+MI QWC++ GI+LP P+KD DE VT+A R+HLNSLL K+ S+ DQKEAAKELRLLT
Sbjct: 108 RDMILQWCRDRGIDLPGPVKDIDE-AVTNADRNHLNSLLRKLQLSVPDQKEAAKELRLLT 166
Query: 196 KRMPLFRALFGESTDAIPLLLSPLS-PGRADTDPGLLEDLITTILNLSIHDENKRLVAEN 254
KRMP R L GES+D IP LLSPLS PG A TDP L EDLITTILNLSIHD+NK++ A +
Sbjct: 167 KRMPSIRTLVGESSDVIPQLLSPLSSPGAASTDPDLHEDLITTILNLSIHDDNKKVFATD 226
Query: 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAM 314
P I LLID+++ GTI+TR NAAA +F+LSA+DSNK IIG+ GA+ L++LL+EG P AM
Sbjct: 227 PAVISLLIDALKCGTIQTRSNAAATIFTLSAIDSNKHIIGESGAIKHLLELLDEGQPFAM 286
Query: 315 KDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIG 374
KD ASAIF+LC++ ENK R V GAVRVIL K+M++ LVDELLAILA+LSSH A+EE+G
Sbjct: 287 KDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPKAVEEMG 346
Query: 375 ELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT 434
+ A+P LL IIREST ER+KENC AILY ICF+DRT+ +EI EEE ANGTLS+LA+ GT
Sbjct: 347 DFDAVPLLLGIIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLSKLAKCGT 406
Query: 435 SRAKRKANGILERLNKAALIVHTA 458
SRAKRKANGILERLN++ + HTA
Sbjct: 407 SRAKRKANGILERLNRSPSLTHTA 430
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2079706 | 460 | PUB9 "plant U-box 9" [Arabidop | 0.991 | 0.986 | 0.536 | 9.5e-121 | |
| TAIR|locus:2146183 | 458 | AT5G18320 [Arabidopsis thalian | 0.936 | 0.936 | 0.410 | 5.4e-79 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.801 | 0.600 | 0.417 | 7.7e-71 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.799 | 0.579 | 0.410 | 9.4e-66 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.803 | 0.557 | 0.396 | 2e-65 | |
| TAIR|locus:2146198 | 445 | AT5G18330 [Arabidopsis thalian | 0.927 | 0.955 | 0.374 | 6.7e-65 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.796 | 0.525 | 0.392 | 2.3e-64 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.796 | 0.596 | 0.398 | 2.3e-64 | |
| TAIR|locus:2146213 | 456 | AT5G18340 [Arabidopsis thalian | 0.962 | 0.967 | 0.354 | 3.3e-63 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.965 | 0.703 | 0.353 | 1e-61 |
| TAIR|locus:2079706 PUB9 "plant U-box 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
Identities = 249/464 (53%), Positives = 327/464 (70%)
Query: 1 MANPEVEETE-SCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKK 59
MA V +++ + + KA ELK+E+++L+ I DEDD G +Q ++ LS L++ ++K
Sbjct: 1 MAKTGVFDSDPTAIAKAKELKREMKKLLIKIDDEDDLG-VQTIDQLQDALSALREATMRK 59
Query: 60 PHSFKXXXXXXXXXXXXPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
K P EFRCP+S E+M DPVVLA+GQT+D+ IQ+WL GNRTCP+
Sbjct: 60 --MAKSSSLEMLETVSCPEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPK 117
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGIELPK---PIKDTDEDVVTDASRSHLNSLLEK 176
T+QVL HT L PN L+REMIS+WCK++G+E P +++ VT + R NSLL K
Sbjct: 118 TQQVLPHTALTPNLLIREMISKWCKKNGLETKSQYHPNLVNEDETVTRSDREIFNSLLCK 177
Query: 177 MSSS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLI 235
+SSS L DQK AAKELRLLT++ FRALFGES D I L++PL G ++ D L ED++
Sbjct: 178 VSSSNLQDQKSAAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHG-SNPDEKLQEDVV 236
Query: 236 TTILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIG 294
TT+LN+SIHD+ NK+LV ENP IPLLID++R GT+ TR N NK++IG
Sbjct: 237 TTLLNISIHDDSNKKLVCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDSNKVLIG 296
Query: 295 KLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVD 354
K G + PLIDLLEEG+PLA+KDVA+AIF+LCI EN+ RAV GAVRV+ +KI VD
Sbjct: 297 KSGILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNGLYVD 356
Query: 355 ELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTR 414
ELLAILAML +H A+EE+GELG + LL+I RES C+RNKEN IL+ ICF+DRT+ +
Sbjct: 357 ELLAILAMLVTHWKAVEELGELGGVSWLLKITRESECKRNKENAIVILHTICFSDRTKWK 416
Query: 415 EIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHTA 458
EI EEENA+GT+++L+ GTSRA+RKANGIL+RL KA + HTA
Sbjct: 417 EIKEEENAHGTITKLSREGTSRAQRKANGILDRLRKAMNLTHTA 460
|
|
| TAIR|locus:2146183 AT5G18320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 188/458 (41%), Positives = 277/458 (60%)
Query: 10 ESCVRKAVELKKELQRLVKAIL------DEDD---YGGL-QVTNEALRVLSCLKDLKLKK 59
+S A L++ELQ+++ IL D D+ + G+ + +EA+R+L+CL+ ++ K
Sbjct: 3 DSTETNADTLRRELQKVLTEILNDGGGNDRDETEAFSGVVKAIDEAVRILTCLRKVESKI 62
Query: 60 PHSFKXXXXXXXXXXXXPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
P S P EF C +S IM +PV++A+GQT+++ I WL RTCP+
Sbjct: 63 PES-------DISPVEVPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWLKH-ERTCPK 114
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS 179
T+QVLSH + IPNHL+ ++I+QWC + + KP +DE +V + S + +LL+++SS
Sbjct: 115 TKQVLSHRLWIPNHLISDLITQWCLVNKYDHQKP---SDE-LVAELFTSDIEALLQRVSS 170
Query: 180 SLS--DQKEAAKELRLLTKRMPLFRALFGEST-DAIPLLLSPLSP--GRADTDPGLLEDL 234
S S DQ EAAKELR TK+ P R F D+I LLSPLS D+ L E++
Sbjct: 171 SSSVADQIEAAKELRHQTKKFPNVRVFFVAGIHDSITRLLSPLSTLDEAVDSSLELQENI 230
Query: 235 ITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIG 294
+T + NLSI + NK ++AEN L IPLL S++ GT ETRRN NK+IIG
Sbjct: 231 VTALFNLSILESNKTVIAENCLVIPLLTKSLKQGTDETRRNAAATLSSLSAIDSNKIIIG 290
Query: 295 KLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVD 354
A+ LIDL+EEG LA K+ S +F+LCI+LENK + V AG + +KI S VD
Sbjct: 291 NSEAVKALIDLIEEGDLLATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVD 350
Query: 355 ELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT--DRTR 412
ELL++LA++S+H A+EE+ +LG I L I+R+ + EN I++N+ DR+R
Sbjct: 351 ELLSLLALISTHNRAVEEMDKLGFIYDLFSILRKPSSLLTGENAVVIVFNMYDRNRDRSR 410
Query: 413 TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450
+ + EEEN +GT ++LA+ G+ RA RKA GIL+ + +
Sbjct: 411 LKVVGEEENQHGTFTKLAKQGSVRAARKAQGILQWIKR 448
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 159/381 (41%), Positives = 238/381 (62%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P EFRCPIS E+M DPV++++GQT++R CIQ+WLD G++TCP+T+Q LSHT L PN +++
Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLK 288
Query: 137 EMISQWCKEHGIELPKPIKDT-DEDVVTDASRSH--LNSLLEKMSSSLSD-QKEAAKELR 192
+ISQWC+ +GIELPK +++ D+ + H L SL+ ++ S D Q+ AA E+R
Sbjct: 289 SLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIR 348
Query: 193 LLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVA 252
LL KR R E+ AIPLL++ LS +DP E +T +LNLSIH+ NK +
Sbjct: 349 LLAKRNVNNRICIAEA-GAIPLLVNLLS----SSDPRTQEHAVTALLNLSIHENNKASIV 403
Query: 253 ENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIGKLGAMTPLIDLLEEGHPL 312
++ AIP +++ ++TG++ETR N NK+ IG GA+ PLI+LL +G P
Sbjct: 404 DSH-AIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPR 462
Query: 313 AMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILAMLSSHQDAI 370
KD A+AIF+LCI NK RAV AG V ++ +++ ++DE L++L++L+ + +
Sbjct: 463 GKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGK 522
Query: 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430
I IP L+ +I+ + RN+EN AAIL+ +C D +T + L L+
Sbjct: 523 IVIARSEPIPPLVEVIKTGS-PRNRENAAAILWLLCSADTEQTLAA-KAAGVEDALKELS 580
Query: 431 ENGTSRAKRKANGILERLNKA 451
E GT RAKRKA+ ILE +++A
Sbjct: 581 ETGTDRAKRKASSILELMHQA 601
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 157/382 (41%), Positives = 228/382 (59%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P FRCPIS E+M DPV+++ GQT++R IQ+WLD G++TCP++++ L H L PN++++
Sbjct: 249 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 308
Query: 137 EMISQWCKEHGIELPK---PIKDTD--EDVVTDASRSHLNSLLEKMSSSLSDQKEAAK-E 190
+I+ WC+ +GIELP+ + T +D R+ + SLLEK+++ ++Q+ AA E
Sbjct: 309 SLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGE 368
Query: 191 LRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL 250
LRLL KR R E+ AIPLL+ LS DP E +T +LNLSI++ NK
Sbjct: 369 LRLLAKRNVDNRVCIAEA-GAIPLLVELLS----SPDPRTQEHSVTALLNLSINEGNKGA 423
Query: 251 VAENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIGKLGAMTPLIDLLEEGH 310
+ + AI +++ ++ G++E R N NK+ IG GA+ LI LLEEG
Sbjct: 424 IVDAG-AITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGT 482
Query: 311 PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILAMLSSHQD 368
KD A+AIF+LCI NK RAV G V + R + + +VDE LAILA+LS++Q+
Sbjct: 483 RRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQE 542
Query: 369 AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSR 428
I E +IP L+ IIR + RN+EN AAIL+ +C + R + E A+ L
Sbjct: 543 GKTAIAEAESIPVLVEIIRTGS-PRNRENAAAILWYLCIGNIERLN-VAREVGADVALKE 600
Query: 429 LAENGTSRAKRKANGILERLNK 450
L ENGT RAKRKA +LE + +
Sbjct: 601 LTENGTDRAKRKAASLLELIQQ 622
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 152/383 (39%), Positives = 226/383 (59%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P +FRCPIS E+M DPV++++GQT++R CI++W++ G+ TCP+T+Q L+ T L PN+++R
Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLR 316
Query: 137 EMISQWCKEHGIELPKPIKDTDEDVVTD----ASRSHLNSLLEKMS-SSLSDQKEAAKEL 191
+I+QWC+ + IE PKP V+ A + + L+ +++ + DQ+ AA E+
Sbjct: 317 SLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEI 376
Query: 192 RLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLV 251
RLL KR R E+ AIPLL+ LS D + E +T +LNLSI + NK +
Sbjct: 377 RLLAKRNADNRVAIAEA-GAIPLLVGLLST----PDSRIQEHSVTALLNLSICENNKGAI 431
Query: 252 AENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIGKLGAMTPLIDLLEEGHP 311
AIP ++ ++ G++E R N NK+ IG LGA+ PL+ LL EG
Sbjct: 432 VSAG-AIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQ 490
Query: 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILAMLSSHQDA 369
KD A+A+F+LCI NK +A+ AG + + R + E + +VDE LAILA+LSSH +
Sbjct: 491 RGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEG 550
Query: 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRL 429
IG A+P L+ IR + RN+EN AA+L ++C D E ++ G L L
Sbjct: 551 KAIIGSSDAVPSLVEFIRTGS-PRNRENAAAVLVHLCSGDPQHLVEA-QKLGLMGPLIDL 608
Query: 430 AENGTSRAKRKANGILERLNKAA 452
A NGT R KRKA +LER+++ A
Sbjct: 609 AGNGTDRGKRKAAQLLERISRLA 631
|
|
| TAIR|locus:2146198 AT5G18330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 173/462 (37%), Positives = 252/462 (54%)
Query: 1 MANPEVEETESCVRKAVELKKELQRLVKAILDEDDYGGLQ--VTNEALRVLSCLKDLKLK 58
MA+ +E+ + A L +EL +++ I D GG +EA+R+L+CL+ ++ K
Sbjct: 1 MADSTADESTN----ADTLWRELHKVLPEIWY--DGGGKDHCEIDEAIRILTCLRKIESK 54
Query: 59 KPHSFKXXXXXXXXXXXXPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCP 118
P S P EF C +S +IM +P+++A+GQTF++ I WL RTCP
Sbjct: 55 NPES-------DISPVEVPKEFICTLSNKIMIEPMLIASGQTFEKSYILEWLKH-ERTCP 106
Query: 119 QTRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178
+T+QVL H +IPNHL+ E+I +WC H + PK T ++V+ D L SLL+++S
Sbjct: 107 RTKQVLYHRFMIPNHLINEVIKEWCLIHNFDRPK----TSDEVI-DLFTGDLESLLQRIS 161
Query: 179 S--SLSDQKEAAKELRLLTKRMPLFRALF-GESTDAIPLLLSPLSPGRADTDPGLLEDLI 235
S S+ DQ EAAKEL L KR F + D+I LL+PLS D++P LE+++
Sbjct: 162 SPSSVEDQTEAAKELALKAKRFSSVCVYFVAKIPDSITRLLTPLSISE-DSNPEFLENIV 220
Query: 236 TTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIGK 295
T + S ++NK LVAENPL +PLL ++ GT+ TR + NK+IIG
Sbjct: 221 TALHIFSTSEKNKTLVAENPLVLPLLAKYMKQGTVLTRIHSAATVNSLSYTDSNKIIIGN 280
Query: 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDE 355
+ LI ++EEG LA + SA+ +LC + E +AV G +R ++KI S V
Sbjct: 281 SEVLKALIHVIEEGDSLATSEAFSALSNLCPVKEISEKAVSEGLIRAAIKKIKAGSNVSM 340
Query: 356 LLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD---- 409
LL++LA +S+ HQ EE+ LG I L I+R S N EN I+YNIC +
Sbjct: 341 LLSLLAFVSTQNHQTT-EEMDNLGLIYDLFSILRNSNSLVNDENAVVIVYNICKSYKALQ 399
Query: 410 ----RTRTREI-MEEENANGTLSRLAENGTSRAKRKANGILE 446
R R++ +EEEN +GT +RL RA A ILE
Sbjct: 400 NVVLREEKRDVVLEEENKHGTFTRLENQEAGRATSLAKRILE 441
|
|
| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 150/382 (39%), Positives = 225/382 (58%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P EFRCPIS E+M DPV+++ GQT++R CI++W+ G+ TCP T+Q +S + L PN+++R
Sbjct: 274 PDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLR 333
Query: 137 EMISQWCKEHGIELPK----PIKDTDEDVVTDASRSHLNSLLEKMSS-SLSDQKEAAKEL 191
+ISQWC+ +G+E PK P K T + + R+++++LL K+ S +Q+ AA EL
Sbjct: 334 SLISQWCETNGMEPPKRSTQPNKPTP--ACSSSERANIDALLSKLCSPDTEEQRSAAAEL 391
Query: 192 RLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLV 251
RLL KR R E+ AIPLLLS LS T E +T +LNLSIH++NK +
Sbjct: 392 RLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLRTQ----EHAVTALLNLSIHEDNKASI 446
Query: 252 AENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIGKLGAMTPLIDLLEEGHP 311
+ A+P ++ ++ G++E R N K+ IG +GA+ L+ LL EG
Sbjct: 447 ISSG-AVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQ 505
Query: 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME--NSLVDELLAILAMLSSHQDA 369
KD A+A+F+LCI NK RA+ AG V +I+ + +L+DE +AIL++LSSH +
Sbjct: 506 RGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEG 565
Query: 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE-NANGTLSR 428
IG +P L+ +I T RN+EN AA++ ++C + +E L
Sbjct: 566 KAAIGAAEPVPVLVEMIGSGT-PRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRE 624
Query: 429 LAENGTSRAKRKANGILERLNK 450
LA NGT R KRKA +LER+++
Sbjct: 625 LALNGTDRGKRKAVQLLERMSR 646
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 151/379 (39%), Positives = 225/379 (59%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P +F CP+S E+M DPV++A GQT++R IQRW+D GN TCP+T+Q L + L PN+++R
Sbjct: 242 PVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLR 301
Query: 137 EMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSS-SLSDQKEAAKELRLLT 195
+IS+WC EH IE +P + S + +L++++SS S D++ A E+R L+
Sbjct: 302 SLISRWCAEHNIE--QPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLS 359
Query: 196 KRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENP 255
KR R L E+ AIP+L++ L+ D E+ IT +LNLSI++ NK L+
Sbjct: 360 KRSTDNRILIAEA-GAIPVLVNLLT----SEDVATQENAITCVLNLSIYENNKELIMFAG 414
Query: 256 LAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNKLIIGKLGAMTPLIDLLEEGHPLAMK 315
A+ ++ +R GT+E R N NK+IIG GA+ L+DLLE G P K
Sbjct: 415 -AVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKK 473
Query: 316 DVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS---LVDELLAILAMLSSHQDAIEE 372
D A+A+F+LCI NK RAV AG V +++ + +++ +VDE L IL++L+++QDA
Sbjct: 474 DAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSA 533
Query: 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432
I + +P L+ I++ RN+EN AAIL ++C D + I A L L++N
Sbjct: 534 IVKANTLPALIGILQTDQT-RNRENAAAILLSLCKRDTEKLITI-GRLGAVVPLMDLSKN 591
Query: 433 GTSRAKRKANGILERLNKA 451
GT R KRKA +LE L KA
Sbjct: 592 GTERGKRKAISLLELLRKA 610
|
|
| TAIR|locus:2146213 AT5G18340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 164/463 (35%), Positives = 260/463 (56%)
Query: 1 MANPEVEETESCVRKAVELKKELQRLVKAILDE----DDYGGLQVTNEALRVLSCLKDLK 56
MA+ + TE+ + L++EL++++ L++ D ++ +EA+R+L+ LK ++
Sbjct: 1 MADSTADATETNA-DTLTLRRELKKVLTENLNDGGVKDRVETVKSIDEAIRILNRLKIVE 59
Query: 57 LKKPHSFKXXXXXXXXXXXXPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRT 116
KK P EF+C +S IM DPV++ +GQT+++ I WL+ + T
Sbjct: 60 SKK-----RKRESDSSSVEVPKEFKCTLSKTIMIDPVIIFSGQTYEKRYITEWLNH-DLT 113
Query: 117 CPQTRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEK 176
CP +QVL L PNHL+ E+I++WC + + P P K +D D VT+ + SLL++
Sbjct: 114 CPTAKQVLYRVCLTPNHLINELITRWCLANKYDRPAP-KPSDIDYVTELFTDGIESLLQR 172
Query: 177 MSS---SLSDQKEAAKELRLLTKRMPLFRALF-GESTDAIPLLLSPLSP-G-RADTDPGL 230
+SS S++DQ EAAKEL L T++ R F E D+I LL+PLS G D++P L
Sbjct: 173 ISSPSSSVADQTEAAKELALQTEKFVNVRDFFIKELPDSITRLLTPLSVLGDEVDSNPEL 232
Query: 231 LEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXXXXNK 290
E+++T + N+S ++NK ++AEN IPLL S++ G++ TRRN NK
Sbjct: 233 QENIVTALFNMSTFEKNKTVLAENHQVIPLLAKSMKQGSVVTRRNATLTLASLSDIDSNK 292
Query: 291 LIIGKLGAMTPLIDLLEEGHPL-AMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIM 348
+IIG A+ LIDL+ E L A D A+ LC EN ++A+ G ++ I
Sbjct: 293 IIIGNSVALKALIDLIGELDDLSATHDALCAVIDLCCDERENWKKAISLGLAPAAIKNIK 352
Query: 349 ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408
+ E LA LA++S H+ I+E+ LG I LL I+R+++C EN I+ N+
Sbjct: 353 ARRNLFESLAALALISPHERVIQEVANLGVIYDLLSILRKTSCMVTCENAVVIVGNMYAK 412
Query: 409 DRTRT-REIM-EEENANGTLSRLAENGTSRAKRKANGILERLN 449
R R+ ++I+ EEEN + T +++A G+ A KA GIL+ +N
Sbjct: 413 SRERSIKKILAEEENQHKTFTKIATQGSVVAVMKAQGILQCIN 455
|
|
| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 166/469 (35%), Positives = 257/469 (54%)
Query: 1 MANPEVEETESCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCL-----KDL 55
++ P +E+ S RK +E + + V ++ DE + + L+ D
Sbjct: 164 LSEP-MEKDASSNRKVIEKLESIPETVHSLSDEKKFESPPPWKSSSVSLAFFLSKDGDDE 222
Query: 56 KLKKPHSFKXXXXXXXXXXXXPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNR 115
+L+K + P +F CPIS E+M DP +++ GQT++R IQRW+D GN
Sbjct: 223 RLEKAVTENSDDSQKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNL 282
Query: 116 TCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIELPKPI-----KDTD---EDVVTDASR 167
+CP+T+Q L + L PN+++R +ISQWC +H IE P K++D D+ D S
Sbjct: 283 SCPKTQQKLENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSA 342
Query: 168 SHLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADT 226
+ +L+ K+SS S+ D++ A E+R L+KR R L E+ AIP+L+ L+ +D
Sbjct: 343 --IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEA-GAIPVLVKLLT---SDG 396
Query: 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNXXXXXXXXXXX 286
D E+ +T ILNLSI++ NK L+ A+ ++ +R G++E R N
Sbjct: 397 DTETQENAVTCILNLSIYEHNKELIMLAG-AVTSIVLVLRAGSMEARENAAATLFSLSLA 455
Query: 287 XXNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRK 346
NK+IIG GA+ L+DLL+ G KD A+A+F+LCI NK RAV AG V+ +++
Sbjct: 456 DENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKM 515
Query: 347 IMENS---LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403
+ ++S + DE L IL++L+S+Q A I AIP L+ +++ RN+EN AAIL
Sbjct: 516 LTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQ-PRNRENAAAILL 574
Query: 404 NICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452
+C D + I A L L+ +GT RAKRKAN +LE L K++
Sbjct: 575 CLCKRDTEKLISI-GRLGAVVPLMELSRDGTERAKRKANSLLELLRKSS 622
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SRT0 | PUB9_ARATH | 6, ., 3, ., 2, ., - | 0.5673 | 0.9694 | 0.9652 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 8e-26 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 5e-22 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 7e-09 | |
| smart00184 | 40 | smart00184, RING, Ring finger | 2e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-04 | |
| pfam00097 | 40 | pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING | 4e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 7e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 | |
| cd00162 | 45 | cd00162, RING, RING-finger (Really Interesting New | 0.001 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 0.002 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.004 | |
| pfam05804 | 708 | pfam05804, KAP, Kinesin-associated protein (KAP) | 0.004 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 8e-26
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREM 138
EF CPIS E+M DPV+L +GQT++R I++WL + T P T Q L+H LIPN ++
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59
Query: 139 ISQW 142
I +W
Sbjct: 60 IQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 5e-22
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P EF PI+ E+M DPV+L +G T+DR I+R L + T P TR+ L+H LIPN ++
Sbjct: 2 PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELK 61
Query: 137 EMISQWCKEHGI 148
E I W +E+
Sbjct: 62 EKIDAWLEENRW 73
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-09
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 80 FRCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNR-TCPQ 119
F CPIS E+MTD PV+L G + R +++ G + CP
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55
|
This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55 |
| >gnl|CDD|214546 smart00184, RING, Ring finger | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-05
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 82 CPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCP 118
CPI E V+ G TF R CI++WL+ GN TCP
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCP 38
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 257 AIPLLIDSVRTGTIETRRNAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMK 315
+P L+ + + +R AA AL +LSA + N + + G + L+ LL+ +K
Sbjct: 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67
Query: 316 DVASAIFSLCILLENKRRAV-HAGAVRVILR--KIMENSLVDELLAILAMLSS 365
A+ +L E+ + V AG V ++ + L+ L+S
Sbjct: 68 AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 170 LNSLLEKMSSSLSD-QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDP 228
L +L+ +SSS + Q+EAA L L+ E+ +P L+ L D
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLK----SEDE 63
Query: 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285
+++ + + NL+ E+ +L+ +P L++ + + + ++NA AL +L++
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 4e-04
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 82 CPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCP 118
CPI E DPV + G F CI WL+ GN TCP
Sbjct: 1 CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCP 38
|
The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPLI 303
E ++ + + A+PLL+ +R+GT+ + NAAA L L + K+++G G + PL+
Sbjct: 48 EARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG--GCIPPLL 105
Query: 304 DLLEEGHPLAMKDVASAIF 322
LL+ G A K A AI+
Sbjct: 106 SLLKSGSAEAQKAAAEAIY 124
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 335 VHAGAVRVI---LRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTC 391
+ AG + + L EN + A+ + + + D I+ + E G +P L+++++ S
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SED 62
Query: 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449
E + L N+ + I+ E L L ++ ++ A G L L
Sbjct: 63 EEVVKAALWALRNLAA-GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.001
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 82 CPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVL 124
CPI E +PVVL G F R CI +WL G TCP R +
Sbjct: 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
|
Length = 45 |
| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.002
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 79 EFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQ 122
E CPI +++ DPVVL G F R CI R+L + CP R
Sbjct: 2 ELECPICLDLLRDPVVLTPCGHVFCRECILRYL-KKKSKCPICRT 45
|
Length = 45 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 68/307 (22%), Positives = 119/307 (38%), Gaps = 69/307 (22%)
Query: 163 TDASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPG 222
T AS + L SSS +++ L L K R G + A+PLL+S L G
Sbjct: 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG 70
Query: 223 RADTDPGLLEDL-ITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALF 281
L + +L + +E+ R+ IP L+ +++G+ E ++ AA A++
Sbjct: 71 ------TLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIY 124
Query: 282 SLSA----------------------------LDSNKLIIGKL----------------- 296
++S+ +K++ G L
Sbjct: 125 AVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSA 184
Query: 297 ----GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKR-RAVHAGAVRVILRKIMEN- 350
G + L+ LL G+ A + AS + L + E+ + + AGAV+ +L+ + +
Sbjct: 185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244
Query: 351 --SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRII--------RESTCERNKENCA 399
S+ E L LSS ++A + I + G IP L+ + + +EN
Sbjct: 245 EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAM 304
Query: 400 AILYNIC 406
L NIC
Sbjct: 305 GALANIC 311
|
Length = 2102 |
| >gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 1/181 (0%)
Query: 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289
LL +LNL+ D L + LL+ ++ E + L LS D N
Sbjct: 261 LLRVAFYLLLNLA-EDIKVELKMRRKNIVALLVKALDRDNSELLILVVSFLKKLSIFDEN 319
Query: 290 KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME 349
K + + G + L+ L H + +F+L + + V+ G + ++ +
Sbjct: 320 KNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDN 379
Query: 350 NSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409
++ L +L LS A IP L++++ E T ER A+ N+
Sbjct: 380 DNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINLALNK 439
Query: 410 R 410
R
Sbjct: 440 R 440
|
This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.96 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.96 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.95 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.95 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.93 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.92 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.9 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.85 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.83 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.77 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.73 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.69 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.64 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.64 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.56 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.56 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.44 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.42 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.4 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.36 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.35 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.35 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.29 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.29 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.25 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.21 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 99.2 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 99.18 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 99.13 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.13 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 99.12 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.1 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 99.06 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 99.06 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 99.04 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 99.02 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 99.02 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.01 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 99.0 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.98 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.98 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.97 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.96 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.9 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.85 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.83 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.82 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.77 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.76 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.75 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.75 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.66 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.65 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.65 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.65 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.64 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.64 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 98.63 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 98.63 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.62 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.61 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.6 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.58 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.52 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.5 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.49 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 98.46 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.45 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 98.45 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.39 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 98.39 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.39 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.37 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 98.37 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.36 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.3 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.26 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 98.25 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 98.25 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 98.2 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 98.2 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.19 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.18 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.17 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.16 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.15 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.15 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.13 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 98.13 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.12 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.08 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 98.05 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.98 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 97.97 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.94 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.9 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.89 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.89 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.84 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.83 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.82 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.82 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.8 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.8 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.72 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.65 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.64 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.61 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.59 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.57 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.55 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.54 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.52 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.49 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 97.48 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 97.41 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.38 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.37 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.36 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 97.32 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.32 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 97.32 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.32 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 97.29 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.27 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.26 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.24 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.23 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.23 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.2 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.19 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.19 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 97.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.11 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.11 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 97.08 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.02 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.98 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.98 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 96.97 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 96.96 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 96.93 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 96.93 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.9 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.89 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.89 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 96.84 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 96.77 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.73 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.7 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.62 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.6 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.57 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.54 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.53 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.51 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 96.5 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 96.49 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.49 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 96.36 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.32 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.17 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.15 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.15 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 96.12 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 96.11 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 96.11 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.09 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.07 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.07 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.06 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.02 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 96.02 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.93 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 95.85 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.85 | |
| KOG2930 | 114 | consensus SCF ubiquitin ligase, Rbx1 component [Po | 95.84 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.8 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 95.7 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 95.66 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.64 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 95.61 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.59 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 95.57 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.53 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.5 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.49 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.48 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.47 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 95.41 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.37 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.35 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 95.32 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 95.31 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 95.28 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 95.27 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.23 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 95.21 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.18 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 95.08 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.01 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.95 | |
| COG5220 | 314 | TFB3 Cdk activating kinase (CAK)/RNA polymerase II | 94.93 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.91 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 94.84 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 94.84 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.82 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.67 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 94.54 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.54 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 94.53 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.49 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 94.49 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.49 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.49 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.46 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 94.36 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 94.25 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 94.25 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 94.16 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 94.09 | |
| KOG3002 | 299 | consensus Zn finger protein [General function pred | 94.08 | |
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 93.74 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 93.65 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 93.56 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.53 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.52 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.46 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 93.43 | |
| PF08746 | 43 | zf-RING-like: RING-like domain; InterPro: IPR01485 | 93.37 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.32 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 93.29 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.23 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 93.2 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.19 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.09 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 93.08 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 92.97 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 92.92 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 92.89 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 92.85 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 92.84 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 92.68 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 92.63 | |
| KOG4739 | 233 | consensus Uncharacterized protein involved in syna | 92.56 | |
| PHA02825 | 162 | LAP/PHD finger-like protein; Provisional | 92.55 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 92.53 | |
| PF14569 | 80 | zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. | 92.52 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.33 | |
| KOG3268 | 234 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.2 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 92.01 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.99 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 91.8 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 91.7 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 91.48 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 91.46 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 91.39 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 91.33 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 90.87 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 90.77 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 90.72 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 90.68 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 90.66 | |
| KOG3970 | 299 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.61 | |
| COG5236 | 493 | Uncharacterized conserved protein, contains RING Z | 90.43 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 90.22 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 90.19 | |
| KOG1812 | 384 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.97 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 89.67 | |
| PHA02862 | 156 | 5L protein; Provisional | 89.59 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 89.35 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 89.0 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 88.88 | |
| PHA03096 | 284 | p28-like protein; Provisional | 88.58 | |
| PF10272 | 358 | Tmpp129: Putative transmembrane protein precursor; | 88.54 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 88.46 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 88.3 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 88.29 | |
| PF07191 | 70 | zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 | 88.24 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 88.16 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 88.09 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 88.06 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 88.05 | |
| PF12906 | 47 | RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. | 87.84 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 87.73 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 87.34 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 87.07 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 86.96 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 86.24 | |
| COG3813 | 84 | Uncharacterized protein conserved in bacteria [Fun | 85.42 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 85.37 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 85.32 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 85.11 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 85.09 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 84.13 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 83.95 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 83.94 | |
| PF05605 | 54 | zf-Di19: Drought induced 19 protein (Di19), zinc-b | 83.94 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 83.87 | |
| KOG4718 | 235 | consensus Non-SMC (structural maintenance of chrom | 83.33 | |
| COG0068 | 750 | HypF Hydrogenase maturation factor [Posttranslatio | 82.94 | |
| PF03854 | 50 | zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc | 82.58 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 82.22 | |
| PF07800 | 162 | DUF1644: Protein of unknown function (DUF1644); In | 81.63 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 80.28 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=268.32 Aligned_cols=278 Identities=18% Similarity=0.267 Sum_probs=243.1
Q ss_pred hhhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-S--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
..+..+|+.|. . +++.+..|+..|+.+++.++.+|..|.+..|+||.|+.+|+++ +..+++.|+.+|.+++.+
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg----~~~vk~nAaaaL~nLS~~ 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG----TLGAKVNAAAVLGVLCKE 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence 46888999995 2 5688999999999999999999999986689999999999875 889999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC---cchhH-hhccCchHHHHHHhhcCC---hHHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD---SNKLI-IGKLGAMTPLIDLLEEGH---PLAMKDV 317 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~-i~~~g~i~~Lv~lL~~~~---~~~~~~a 317 (458)
++++..++.. |++|.|+.+|++++.+.+++|+++|++|+.+. .++.. ++..|+||+|+.++++++ ..++..+
T Consensus 89 e~nk~~Iv~~-GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~A 167 (2102)
T PLN03200 89 EDLRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLL 167 (2102)
T ss_pred HHHHHHHHHc-CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHH
Confidence 9999999985 69999999999999999999999999999873 44544 456999999999999873 3356778
Q ss_pred HHHHHHhcccccchhH-HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChh
Q 012677 318 ASAIFSLCILLENKRR-AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCER 393 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 393 (458)
+.+|+||+.+.+++.. +++.|++|.|+.+|.++ ..+..|+.+|.+++. +++.+..++++|+||.|+++|+++.+..
T Consensus 168 v~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~ 247 (2102)
T PLN03200 168 TGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVS 247 (2102)
T ss_pred HHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChH
Confidence 8999999999998755 68999999999999977 678899999999987 5889999999999999999998655579
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC---------HHHHHHHHHHHHHHHhh
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT---------SRAKRKANGILERLNKA 451 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~---------~~~~~~A~~~L~~l~~~ 451 (458)
+|++|+++|.+|+.++.+ .+..+.+.|+++.|++++.+.+ ...+++|.|+|.|||+-
T Consensus 248 VRE~AA~AL~nLAs~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999998754 4566667999999999987544 34699999999999973
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=225.20 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=252.5
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..|+.++ ....++|..++++|.+|+.. +.++..|.. .|++.+|..+-++. +..++.++..+|.|+....+
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~-sGaL~pltrLaksk----dirvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIAR-SGALEPLTRLAKSK----DIRVQRNATGALLNMTHSRE 199 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhh-ccchhhhHhhcccc----hhhHHHHHHHHHHHhhhhhh
Confidence 3566676666 45688999999999999986 889999999 89999999966653 88999999999999999999
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccC--chHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLG--AMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
||+.++.+| ++|.||.++++++.++|..++.++.|++.+..+++.+.+.| .|+.||+++++++++++..|..+|.+|
T Consensus 200 nRr~LV~aG-~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 200 NRRVLVHAG-GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL 278 (550)
T ss_pred hhhhhhccC-CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh
Confidence 999999985 99999999999999999999999999999999999999977 999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+.+.+....++++|.+|.++++|+++ +..-..+..+.|++-+|-+...|+++|.+.+||++|+-.+++++|-+|+.+|
T Consensus 279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 99999999999999999999999988 5677788899999999999999999999999999999888889999999999
Q ss_pred HHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 403 YNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 403 ~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+||+...+.. +..+.+.|+++.+.+|+.++...++..-...+..|+-....
T Consensus 359 rnLAasse~n-~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 359 RNLAASSEHN-VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred HHHhhhhhhh-hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 9999876644 35666799999999999999999998888888888755443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=262.43 Aligned_cols=282 Identities=22% Similarity=0.219 Sum_probs=244.8
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+.++.|++.|. ++...|..|+..|++++..++.++..|.+ .|+||.|+++|+++ +..+++.|+++|.|++.++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~s~----~~~iqeeAawAL~NLa~~~ 519 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA-AGGIPPLVQLLETG----SQKAKEDSATVLWNLCCHS 519 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCCc
Confidence 357899999996 56788999999999999989999999999 99999999999975 8899999999999999988
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-----------------------------------
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK----------------------------------- 290 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~----------------------------------- 290 (458)
++.+.++...|++|.|+++|++++...++.|+++|.+|+...++.
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 776766644469999999999999999999999999996432211
Q ss_pred ---hHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 291 ---LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 291 ---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
......|+|+.|+.+|+++++..++.|+++|.+++... +++..++..|++++|+.+|+++ ++++.++++|.+|+
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 01113689999999999999999999999999999855 4678899999999999999977 67899999999999
Q ss_pred C--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHH
Q 012677 365 S--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442 (458)
Q Consensus 365 ~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~ 442 (458)
. .++++..+++.|+|++|+++|... +.++++.|+.+|.||+...+.. .++. ..|++++|++++++|+++.|++|+
T Consensus 680 ~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~e~~-~ei~-~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 680 RSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDPEVA-AEAL-AEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred hCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCchHH-HHHH-hcCcHHHHHHHHHhCChHHHHHHH
Confidence 6 666788889999999999999965 5999999999999999988754 3444 478899999999999999999999
Q ss_pred HHHHHHHhhHhhhh
Q 012677 443 GILERLNKAALIVH 456 (458)
Q Consensus 443 ~~L~~l~~~~~~~~ 456 (458)
++|.+|++..+..+
T Consensus 757 ~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 757 RALAQLLKHFPVDD 770 (2102)
T ss_pred HHHHHHHhCCChhH
Confidence 99999998877543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=228.10 Aligned_cols=280 Identities=17% Similarity=0.165 Sum_probs=243.0
Q ss_pred hhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.+|+.|+ .++..|.+|+++|.+++.++.+....+++ +|++|.++.+|.++ +..+++.|+++|+|++.+.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~s~----~~~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLSSP----SADVREQAVWALGNIAGDS 183 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhcCC----cHHHHHHHHHHHhccccCC
Confidence 57899999996 33788999999999999999988889999 99999999999986 8899999999999999998
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCH-HHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTI-ETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+..+.++-..|+++.|+.++...+. ....+++|+|.||+........+.. ..++|.|..++.+.|+++...|+|||.+
T Consensus 184 ~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 184 PDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSY 263 (514)
T ss_pred hHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8655555445699999999988764 7899999999999987754444444 6789999999999999999999999999
Q ss_pred hccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
|+.+.. ....+++.|+++.|+.+|... .++..|++++.|++. ++..-+.+++.|+++.|..++..+....++..|+
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence 997665 455578899999999999877 578889999999988 5666777799999999999999655577999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
|+|.||+.++.....+++ .+|.+|.|+.++++++.++|..|+|++.|++....
T Consensus 344 W~iSNItAG~~~qiqaVi-da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVI-DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHHHHhhcCCHHHHHHHH-HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 999999999886665555 58999999999999999999999999999986544
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=212.44 Aligned_cols=277 Identities=19% Similarity=0.263 Sum_probs=251.5
Q ss_pred hhhhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+++..+++.- +.+..+|..+...|.+++. +.++|+.++. +|++|.|+.+++++ |++++..+..++.|++.+
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~-aG~lpvLVsll~s~----d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVH-AGGLPVLVSLLKSG----DLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhc-cCCchhhhhhhccC----ChhHHHHHHHHhhhhhhh
Confidence 345778888843 3568899999999999997 5889999998 99999999999986 999999999999999999
Q ss_pred chhhhhhhcCC-CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 245 DENKRLVAENP-LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 245 ~~~~~~i~~~~-~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
..+|+.+++++ ..+|.||+++++++..++-.|..+|.||+.+.++...|+++|++|.+|++|+++..........++.|
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 99999998863 48999999999999999999999999999999999999999999999999999877778888999999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
++.++-|-..|+++|.+.+||++|+-+ +++..|..+|++|+. ++.++..|.++|+||.|.+++.++. -++|+.-.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqseis 397 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQSEIS 397 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHHHHH
Confidence 999999999999999999999999855 589999999999998 7889999999999999999999765 99999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+++..|+.....+ ..+.+.|.++.|+.+..+.+..++.+|+.+|.|+|.-
T Consensus 398 ac~a~Lal~d~~k--~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 398 ACIAQLALNDNDK--EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHHHHHhccccH--HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 9999999877654 5566799999999999999999999999999999853
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=213.45 Aligned_cols=283 Identities=17% Similarity=0.174 Sum_probs=247.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
++++.+++++. ++..++..|+++|++++.+++.+|..+.+ .|++++|+.++... .......++.|+|.||+.+.+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~-~g~l~pLl~~l~~~---~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLS-CGALDPLLRLLNKS---DKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHh-hcchHHHHHHhccc---cchHHHHHHHHHHHHHHcCCC
Confidence 57888999995 56889999999999999999999999999 99999999999875 123688899999999999875
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
-...+.....++|.|..+|.+.+.++...|+|+|.+|+... +.-..+++.|+++.||.+|...++.++..|++++.|++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 33333333348999999999999999999999999999655 44666778999999999999999999999999999999
Q ss_pred ccccchhH-HHhhCcHHHHHHHhcc-C--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 326 ILLENKRR-AVHAGAVRVILRKIME-N--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 326 ~~~~~~~~-i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
...+.... +++.|+++.|..+|.. + .+++.|+++|.|++. +++..++++++|.+|.|+.+|+.++ .++|..|+|
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAaw 386 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAW 386 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHH
Confidence 88876555 7889999999999984 4 478899999999977 8889999999999999999999775 999999999
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
++.|++.....++-..+.+.|.+++|..++...+.++-..+...|.++-++.+..
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 9999998777666677778999999999998788889999999999998877653
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=194.99 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=232.7
Q ss_pred hhhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++++|+.|.+. .-.+.+|.++|.+++.+...-...+++ +|++|.++.+|.++ +.++++.++++|+|++.++
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd-~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS 188 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD-AGAVPLFIQLLSST----EDDVREQAVWALGNIAGDS 188 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe-CCchHHHHHHHcCc----hHHHHHHHHHHhccccCCc
Confidence 5678999999432 335679999999999987777777788 99999999999986 8899999999999999998
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC--HHHHHHHHHHHHHhhccC---cchhHhhccCchHHHHHHhhcCChHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT--IETRRNAAAALFSLSALD---SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASA 320 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 320 (458)
+..+-++-..|++..++.+|.++. ..+..++.|+|.||+... ++...| ..++|.|.+++.+.++++...|+||
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 865544444469999999988764 578899999999999754 223333 3469999999999999999999999
Q ss_pred HHHhcccccc-hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 321 IFSLCILLEN-KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 321 L~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
|.+|+..+.. ...+++.|..+.|+++|.++ .++..+++.+.|+... +..-+.+++.|+++.+-.+|.+.. +.++.
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irK 345 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRK 345 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhh
Confidence 9999987754 45578899999999999987 6788899999999884 445566689999999999999766 79999
Q ss_pred HHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 397 NCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.|+|++.|++.++.....+++ ++..+|+|+.++.+.+-.+++.|+|++.|...+.
T Consensus 346 EaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 346 EACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred hhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999987665555 5889999999999999999999999999987554
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=185.00 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=238.6
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.++++.+|++|+ ++.+++.+++++|.+++.+++.+|..+.+ .|++++|+.+|.+. ..+....+++.++|.||+.+
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~-~galeplL~ll~ss--~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQ-CGALEPLLGLLLSS--AIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHh-cCchHHHHHHHHhc--cchHHHHHHhHHHHHHhhCC
Confidence 3468899999996 45788999999999999999999999999 99999999999864 23568899999999999976
Q ss_pred ch--hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE--NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
.. --...+.. .+|.|.+++.+.++++...|+|++.+|+.... ....+.+.|..+.||.+|.+++..++..|++.+
T Consensus 232 knP~P~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 232 KNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCchHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 43 22233332 78999999999999999999999999987663 356677899999999999999999999999999
Q ss_pred HHhcccccchh-HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 322 FSLCILLENKR-RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 322 ~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
.|+....+... .++++|+++.+-.+|+++ .+++.++++|.|+.. +.+..+++++++.+|+|+++|...+ -.++..
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae-~k~kKE 388 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE-YKIKKE 388 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH-HHHHHH
Confidence 99998777544 478999999999999988 689999999999966 8889999999999999999999764 899999
Q ss_pred HHHHHHHHhccCc---hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 398 CAAILYNICFTDR---TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 398 a~~~L~~L~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
|+|++.|..++.- +.. +.+.+.|++.+|-.++...+.++-+-+..++.++-+....
T Consensus 389 ACWAisNatsgg~~~PD~i-ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 389 ACWAISNATSGGLNRPDII-RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred HHHHHHhhhccccCCchHH-HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 9999999988653 333 4445689999999999877777777777777777655443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-20 Score=189.00 Aligned_cols=217 Identities=19% Similarity=0.204 Sum_probs=192.9
Q ss_pred HHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCCh
Q 012677 232 EDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP 311 (458)
Q Consensus 232 ~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 311 (458)
..+...|.|++.+..+...+...+ +++.|+++|++++.++...++++|.+||...+|+..+++.|+|++|++++.+++.
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~-iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKG-IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 456677999999999999998874 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCC
Q 012677 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTC 391 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~ 391 (458)
+++..++++|+||+.+.+.|..+++.|++|.|+.+|.++..+..++.+|++|+.++++|..+...+++|.|++++-...+
T Consensus 346 ~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999998876656
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.++..+++++.||+...++. .++.+.|+++.|++......+.. ...+++|++.|...
T Consensus 426 ~~v~~eliaL~iNLa~~~rna--qlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNA--QLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP 483 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHH--HHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch
Confidence 778888999999999988653 44545778899988876654432 34689999988743
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=177.96 Aligned_cols=250 Identities=20% Similarity=0.231 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDS 264 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~l 264 (458)
..++..|.+++. ++.+...+.. .|+|+.|+++|.+. +.++...++..|.+||...+|+..+.+.| +++.|+++
T Consensus 267 rv~~~lLlNLAe-d~~ve~kM~~-~~iV~~Lv~~Ldr~----n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kL 339 (708)
T PF05804_consen 267 RVAFYLLLNLAE-DPRVELKMVN-KGIVSLLVKCLDRE----NEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHhc-ChHHHHHHHh-cCCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHH
Confidence 456677889997 5788888998 99999999999875 78999999999999999999999999975 99999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHH
Q 012677 265 VRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVIL 344 (458)
Q Consensus 265 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv 344 (458)
+.+++.+++..+.++|.|||.+.+.+..+++.|+||.|+.+|.++ ..+..++.+|++||.++++|..+...+++|.|+
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 999999999999999999999999999999999999999999864 466779999999999999999999999999999
Q ss_pred HHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhh
Q 012677 345 RKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEEN 421 (458)
Q Consensus 345 ~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g 421 (458)
++|.++ .+...+++++.||+.++.+.+.+.+.|+++.|++...... + ..-++++.||+.+++... ... .+
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-D---~lLlKlIRNiS~h~~~~k-~~f--~~ 490 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-D---PLLLKLIRNISQHDGPLK-ELF--VD 490 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-c---HHHHHHHHHHHhcCchHH-HHH--HH
Confidence 988654 4666789999999999999999999999999998877544 2 235689999999985433 333 35
Q ss_pred hhHHHHHHhhhC-CHHHHHHHHHHHHHHHh
Q 012677 422 ANGTLSRLAENG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 422 ~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 450 (458)
+++.|+.++..+ ++...-.+.++|.||.-
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTI 520 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence 788888887665 66788999999999863
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=144.89 Aligned_cols=212 Identities=19% Similarity=0.283 Sum_probs=179.9
Q ss_pred cCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcc----------hhHhhccCchHHHHHHhhcC-C
Q 012677 243 IHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSN----------KLIIGKLGAMTPLIDLLEEG-H 310 (458)
Q Consensus 243 ~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~lL~~~-~ 310 (458)
.|+.||..+++.+ +.+.+...|.. +...+...+++++..|..+|+- ...|...|++..|+..+.-+ +
T Consensus 177 ~hE~nrQ~~m~~~-il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 177 MHEVNRQLFMELK-ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred HhHHHHHHHHHhh-HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 4667899999985 89988866654 4556888899999999988763 44566778899999999887 8
Q ss_pred hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHH
Q 012677 311 PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN------SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 384 (458)
|.....+..+|..|+..++.+..+++.|++..|++++.+. .+.+.++..|..|+.+++++..|++.|+.+.++.
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999999999874 2567799999999999999999999999999998
Q ss_pred HHh-hcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC--CHHHHHHHHHHHHHHHhhHhhhh
Q 012677 385 IIR-ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG--TSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 385 ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
++. +++++.+.+.++.++.-||-+.++..+.+++ .|+-...+.-++.. .-.++++|+++++|+..+.+...
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 775 5667999999999999999999988877776 67777777777655 34589999999999998776544
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-19 Score=132.27 Aligned_cols=72 Identities=49% Similarity=0.988 Sum_probs=62.5
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHG 147 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~ 147 (458)
+|++|.||||+++|.|||+++|||+|++.||.+|+..++.+||.|+.+++...+.||..+++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999999999867899999999999999999999999999999875
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=144.04 Aligned_cols=276 Identities=18% Similarity=0.216 Sum_probs=226.4
Q ss_pred hhhhhHHhh---cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKM---SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
++.-++..| .++.+.-...+..++.-+..++.+|+.+++ .++.+.+...|... +...+.+.+.++++-|..++
T Consensus 146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~---gk~~~VRel~~a~r~l~~dD 221 (461)
T KOG4199|consen 146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNRE---GKTRTVRELYDAIRALLTDD 221 (461)
T ss_pred cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHccc---CccHHHHHHHHHHHHhcCCC
Confidence 455566666 244556667788888888889999999999 99999998777654 24478888899999888777
Q ss_pred hh----------hhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-Ch--
Q 012677 246 EN----------KRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HP-- 311 (458)
Q Consensus 246 ~~----------~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~-- 311 (458)
+. .+.|+..+ ++..|+..|+.+ ++++...++.+|..|+..++-++.|.+.|++..|++++.+. ..
T Consensus 222 DiRV~fg~ah~hAr~ia~e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~ 300 (461)
T KOG4199|consen 222 DIRVVFGQAHGHARTIAKEG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGN 300 (461)
T ss_pred ceeeecchhhHHHHHHHHhh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhH
Confidence 63 45666664 788899999876 78999999999999999999999999999999999999874 33
Q ss_pred -HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc----CCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHH
Q 012677 312 -LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME----NSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 312 -~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~----~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~l 385 (458)
...+.++..|..|+..++++..||+.|+.+.++.++.. +.+...++.++..||. .|++...+++.|+-...|+.
T Consensus 301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqA 380 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQA 380 (461)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHH
Confidence 34578899999999999999999999999999999853 3578889999999988 89999999999999999999
Q ss_pred Hhhc-CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 386 IRES-TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 386 l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
|+.. .-..+|.+|++++.||+.++.+.. .++. ..++..|+.......+.....|..+|+.|.=+
T Consensus 381 mkahP~~a~vQrnac~~IRNiv~rs~~~~-~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 381 MKAHPVAAQVQRNACNMIRNIVVRSAENR-TILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhhhhcc-chHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9843 236789999999999999887654 4444 45678888888877788888888888887533
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=168.46 Aligned_cols=267 Identities=19% Similarity=0.190 Sum_probs=225.5
Q ss_pred HHH-HHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCC-----C---CCCCChhHHHHHHHHHHhcccCch-hhhhhh
Q 012677 183 DQK-EAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP-----G---RADTDPGLLEDLITTILNLSIHDE-NKRLVA 252 (458)
Q Consensus 183 ~~~-~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~---~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~ 252 (458)
.+. .|+..|-.++. ++++|..+.+ .|++..|-+||.- + .......++..|..+|.||..++. ||..+.
T Consensus 313 H~lcaA~~~lMK~SF-DEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHhhc-cHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 78888888888 4899999999 9999988887742 1 011134778899999999998876 788888
Q ss_pred cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCcc-hhHhhccCchHHHHHH-hhcCChHHHHHHHHHHHHhcccc-
Q 012677 253 ENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-LDSN-KLIIGKLGAMTPLIDL-LEEGHPLAMKDVASAIFSLCILL- 328 (458)
Q Consensus 253 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~~~-~~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~- 328 (458)
...|++..+|..|.+...++....+.+|+||+= .|.| ++.+.+.|-+..|+.. |........+..+.|||||+.+.
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 888899999999999999999999999999994 4455 7777789999999985 45567788899999999999865
Q ss_pred cchhHHHhh-CcHHHHHHHhccC------CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 329 ENKRRAVHA-GAVRVILRKIMEN------SLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 329 ~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
+|+..|... |++..||.+|.-. .+.+.+-.+|.|++. ++++|+.+.+++++..|+..|++ ++-.+..+
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS-~SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS-HSLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh-cceEEeec
Confidence 799999885 9999999999733 578889999999876 68899999999999999999995 56899999
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
++++||||...++..+ +++.+.|+++.|.+|+++....+-+-++.+|+||--+.+
T Consensus 550 aCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred chhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999988665 778889999999999999888888889999999876653
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=156.92 Aligned_cols=279 Identities=21% Similarity=0.221 Sum_probs=221.2
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE- 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~- 246 (458)
.+++.|.+|. .++..|-.|...|..++..+...+..+.+ .|+|+.||.+|... +.+++..|+++|.||.....
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrq-lggI~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQ-LGGIPKLVALLDHR----NDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHH-hccHHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCC
Confidence 5778888885 56788889999999999999999999999 99999999999985 88999999999999986543
Q ss_pred --hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-------C-------
Q 012677 247 --NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-------G------- 309 (458)
Q Consensus 247 --~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-------~------- 309 (458)
|+..|...+ +++.++++|+. +|.++++...++|.||+++|.-+..|+.. ++..|..-+-. +
T Consensus 309 ~~NKlai~~~~-Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 309 DSNKLAIKELN-GVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred cccchhhhhcC-ChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccc
Confidence 677777775 89999999987 79999999999999999998777777664 35666553321 1
Q ss_pred ChHHHHHHHHHHHHhcc-cccchhHHHhh-CcHHHHHHHhcc--------CCcHHHHHHHHHHhcCCHH------H----
Q 012677 310 HPLAMKDVASAIFSLCI-LLENKRRAVHA-GAVRVILRKIME--------NSLVDELLAILAMLSSHQD------A---- 369 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L~~-~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~La~~~~------~---- 369 (458)
+..+..++..+|.|++. .++.|.++-+. |.|..|+..+.. ....+.|+.+|.||+-.-+ .
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 24577899999999998 66788888885 999999998872 1578999999999985211 0
Q ss_pred ----------------------HHH----------------------HHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 370 ----------------------IEE----------------------IGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 370 ----------------------~~~----------------------i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
++. +...-+|.....+|..+.++.+.+.++++|.||
T Consensus 467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNl 546 (717)
T KOG1048|consen 467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNL 546 (717)
T ss_pred hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhh
Confidence 011 011113444456677666799999999999999
Q ss_pred hccCch---hHH-HHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 406 CFTDRT---RTR-EIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 406 ~~~~~~---~~~-~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.+... ..+ .++....+.++|++|+..+++.+.+.++.+|+||+.....
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 987652 222 3335677899999999999999999999999999987654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=132.03 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=170.5
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
++.++.|+.+|..+ .|+.+++.++.++.|.+..+.++..+.+.| +++.+..+|.++++.+++.|..+|.|++.+.+
T Consensus 11 ~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 11 AQELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDLG-GISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred HHHHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHcC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 57789999999875 589999999999999999999999999985 99999999999999999999999999999999
Q ss_pred chhHhhccCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 289 NKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
|+..|-. .|+.+++...+. +..++..++++|.||+..++.+..+. +.++.++++|..+ .++..++.+|.+|+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9888754 577777755443 77899999999999998887766664 4799999999987 57889999999999
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 365 SHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 365 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.+++..+.++.++++..++.++....+.++-..++....||..+-.
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999976668889999999999976543
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-16 Score=114.47 Aligned_cols=63 Identities=49% Similarity=0.888 Sum_probs=59.4
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQW 142 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 142 (458)
++.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+.+++...+.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4789999999999999999999999999999986 66899999999988999999999999987
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=139.71 Aligned_cols=281 Identities=20% Similarity=0.193 Sum_probs=216.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCch--hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPL--FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.|..||..|. ...+++..|..+|++|...+.. |+..|.+ .++|+.|+.+|+.. .|.++++....+|.||+.+
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~t---~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRHT---QDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHhh---cchHHHHHHHHHHhcccch
Confidence 56888888885 4588999999999999987666 9999999 99999999999975 5899999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcC--------------CHHHHHHHHHHHHHhhc-cCcchhHhhc-cCchHHHHHHhhc
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTG--------------TIETRRNAAAALFSLSA-LDSNKLIIGK-LGAMTPLIDLLEE 308 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~--------------~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~~ 308 (458)
+.-+..++.. .++.|..-+-.+ +.++-.++++.|+|++. .++.++.+.+ .|.|..|+..+++
T Consensus 351 D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~ 428 (717)
T KOG1048|consen 351 DALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQT 428 (717)
T ss_pred hHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHH
Confidence 8777777775 566555433111 24566777888888876 4566777777 6777777755431
Q ss_pred --------------------------------------------------------------------------------
Q 012677 309 -------------------------------------------------------------------------------- 308 (458)
Q Consensus 309 -------------------------------------------------------------------------------- 308 (458)
T Consensus 429 ~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~p 508 (717)
T KOG1048|consen 429 AIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAP 508 (717)
T ss_pred HHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCC
Confidence
Q ss_pred ----------------------CChHHHHHHHHHHHHhccccc-----chhHH-HhhCcHHHHHHHhccC--CcHHHHHH
Q 012677 309 ----------------------GHPLAMKDVASAIFSLCILLE-----NKRRA-VHAGAVRVILRKIMEN--SLVDELLA 358 (458)
Q Consensus 309 ----------------------~~~~~~~~a~~aL~~L~~~~~-----~~~~i-~~~g~v~~Lv~ll~~~--~~~~~a~~ 358 (458)
.++.+.+.++.+|-||+...- .+..+ ....+.++|+++|..+ .+...++.
T Consensus 509 kG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~ 588 (717)
T KOG1048|consen 509 KGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAG 588 (717)
T ss_pred CCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHH
Confidence 123345566667777765442 23334 4567889999999866 68899999
Q ss_pred HHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCC-----hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-
Q 012677 359 ILAMLSSHQDAIEEIGELGAIPCLLRIIRESTC-----ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN- 432 (458)
Q Consensus 359 ~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~- 432 (458)
+|.||+.+..+|..|. .++++.||+.|..+.. +++...++.+|.++...+....+.+.+ .++++.|+.+..+
T Consensus 589 ~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 589 ALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRLISKSQ 666 (717)
T ss_pred HHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHHHhccc
Confidence 9999999999999998 6789999999986543 788899999999999877766666664 7889999998876
Q ss_pred CCHHHHHHHHHHHHHHHhhHhhhh
Q 012677 433 GTSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 433 ~~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
.+++.-+.|..+|..|=.+.+.++
T Consensus 667 ~S~k~~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 667 HSPKEFKAASSVLDVLWQYKELHF 690 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999888766555433
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=125.24 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=163.4
Q ss_pred hhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.|+..|. .++..+..++..+.+.+. .+.++..|.+ .|+++.+..+|..+ ++.+++.|+.+|.|++.+.
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~Ggi~lI~~lL~~p----~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRD-LGGISLIGSLLNDP----NPSVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHH-cCCHHHHHHHcCCC----ChHHHHHHHHHHHhcCCCh
Confidence 46899999995 568899999999999876 6899999999 99999999999986 8899999999999999999
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+|+..+-. .++.+.+.+.+. +.+++..+.++|.||+..+++...+.. .|+.++.+|..|+..++..++.+|.|
T Consensus 86 en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99887743 567677655544 788999999999999998888777754 69999999999999999999999999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS 365 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~ 365 (458)
|+..+.+...++.++++..++.++... ++...++.++.||..
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865 566778888888865
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=138.36 Aligned_cols=226 Identities=19% Similarity=0.189 Sum_probs=189.2
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-h-hhhhhcCCCCH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-N-KRLVAENPLAI 258 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~-~~~i~~~~~~i 258 (458)
...|+.|..+|.+|+.++..|+..+....|.++.||..|.+. ..++....+.+|+||+...+ | ++.+-+. |-+
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~----peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsV 439 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA----PEELLQVYASVLRNLSWRADSNMKKVLRET-GSV 439 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC----hHHHHHHHHHHHHhccccccccHHHHHHhh-hhH
Confidence 346889999999999999999888876689999999999873 55888888899999998866 4 5555555 477
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHhhccC-cchhHhhc-cCchHHHHHHhhcC----ChHHHHHHHHHHHHhcc----c
Q 012677 259 PLLID-SVRTGTIETRRNAAAALFSLSALD-SNKLIIGK-LGAMTPLIDLLEEG----HPLAMKDVASAIFSLCI----L 327 (458)
Q Consensus 259 ~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~----~ 327 (458)
..|+. .+........+....+|+||+.+. +||..|.. .|++..||.+|.-. ...+.+.|-+.|.|.+. .
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 77776 456667778889999999999765 88988888 99999999999643 55778889999988765 4
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
++.|+.+.+.+.+..|++.|++. .++.+++.+||||+. +++.++.+++.|+|+.|-.++.+.+ .-+.+-++.+|.|
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrN 598 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRN 598 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHH
Confidence 45677778889999999999988 578899999999976 9999999999999999999999765 7888889999999
Q ss_pred HhccCchh
Q 012677 405 ICFTDRTR 412 (458)
Q Consensus 405 L~~~~~~~ 412 (458)
|..+.+.+
T Consensus 599 Lln~RPAk 606 (2195)
T KOG2122|consen 599 LLNFRPAK 606 (2195)
T ss_pred HhcCCchh
Confidence 99887644
|
|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-14 Score=90.58 Aligned_cols=39 Identities=38% Similarity=0.877 Sum_probs=31.4
Q ss_pred cccccccccCCccCCCcccccHHHHHHHHhcCC---CCCCCC
Q 012677 82 CPISGEIMTDPVVLANGQTFDRPCIQRWLDEGN---RTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~---~~CP~c 120 (458)
||||+++|++||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 369987
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=119.62 Aligned_cols=272 Identities=13% Similarity=0.146 Sum_probs=210.1
Q ss_pred hHHhhcCC-cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhh
Q 012677 173 LLEKMSSS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLV 251 (458)
Q Consensus 173 Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 251 (458)
+...|..+ .+....+...|..+.... ... .+ . .+..+.|...|.+. ++.++..+++.|.++..+++....+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~-~l-~-~~~~~~L~~gL~h~----~~~Vr~l~l~~l~~~~~~~~~~~~~ 114 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPD-SL-L-PQYQPFLQRGLTHP----SPKVRRLALKQLGRIARHSEGAAQL 114 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHH-HH-H-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44455433 344444555666555432 222 22 2 46778888888875 8899999999999999888876666
Q ss_pred hcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc-
Q 012677 252 AENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN- 330 (458)
Q Consensus 252 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~- 330 (458)
+...++++.++.+|..++.++...|+.+|.+|+.+..+...+...+.+..|..++...+..+|..+..++.+++...+.
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 6555799999999999999999999999999999888888888888899999999888888999999999999987654
Q ss_pred hhHHHhhCcHHHHHHHhccCC--cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChh-----HHhHHHHHHH
Q 012677 331 KRRAVHAGAVRVILRKIMENS--LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCER-----NKENCAAILY 403 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~a~~~L~ 403 (458)
...+.+.|.++.++..|.+.+ ++..++.+|..|+..+.+.+.+.+.|+++.|+.++.+...+. .--..+....
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 555677899999999998874 688899999999999999999999999999999998643222 2223346667
Q ss_pred HHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 404 NICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 404 ~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++...+..... .-..++..|..++.+.++..+..|..++..++...++
T Consensus 275 ~la~~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 275 NLARVSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHHhcChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 777754433211 1245666677777788889999999999999876655
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=117.07 Aligned_cols=219 Identities=17% Similarity=0.191 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE 308 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 308 (458)
.....|+..|.|++.+-..-..+.... ++..||+.|+..+.++.......|..||..++|+..+++.|.|+.|++++..
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkn-iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKN-IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHh-HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 455678888999998876666666664 8999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh
Q 012677 309 GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~ 388 (458)
.+++.+...+..|+||+.+..++.+++..|.+|.|+.++.+..-..-|+.+|+.|+.+++.+..+.-..+|+.+.+.+-.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877777999999999999999999999999999998876
Q ss_pred cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 389 STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 389 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
..+.++...-+..-.|||....+. .++-++.++..|.+......+..- ..++++++.|..
T Consensus 437 ~~~~~vdl~lia~ciNl~lnkRNa--QlvceGqgL~~LM~ra~k~~D~lL---mK~vRniSqHeg 496 (791)
T KOG1222|consen 437 GTGSEVDLALIALCINLCLNKRNA--QLVCEGQGLDLLMERAIKSRDLLL---MKVVRNISQHEG 496 (791)
T ss_pred cCCceecHHHHHHHHHHHhccccc--eEEecCcchHHHHHHHhcccchHH---HHHHHHhhhccc
Confidence 555666666666668888877653 445445566666654332222221 234555555443
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-10 Score=116.61 Aligned_cols=272 Identities=14% Similarity=0.124 Sum_probs=207.1
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
..+.|...|. +++.+|.-++..|.++..++......+.+ .+.++.++.+|... +..+...|..+|.+++.++..
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~~i~~~L~~~----d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLPLIIQCLRDP----DLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHHHHHHHHcCC----cHHHHHHHHHHHHHHhCCchh
Confidence 3445555564 56788999999999999877776777777 89999999999875 899999999999999999888
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
...+...+ .++.|..++...+..+|..+..++.+++... +....+.+.|.++.++..|+++|.-++.+++..|..|+.
T Consensus 153 ~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 153 LEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 77787765 7898999999888899999999999998655 456777779999999999999899999999999999999
Q ss_pred cccchhHHHhhCcHHHHHHHhccC---C-----cHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 327 LLENKRRAVHAGAVRVILRKIMEN---S-----LVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~ll~~~---~-----~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
.+.+..-+.+.|+++.|+.++.+. + ..-..+....+++.. +..-.... ...+..|.+++. +.+...+..
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~-s~d~~~~~~ 309 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLE-SQDPTIREV 309 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhC-CCChhHHHH
Confidence 888988899999999999999754 2 223344566667663 32111100 112333334444 345889999
Q ss_pred HHHHHHHHhccCchhHHHH-HHhhhhhHHHHHH----hhhCCHHHHHHHHHHHHHHH
Q 012677 398 CAAILYNICFTDRTRTREI-MEEENANGTLSRL----AENGTSRAKRKANGILERLN 449 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~-~~~~g~~~~L~~l----l~~~~~~~~~~A~~~L~~l~ 449 (458)
|+.+|..|++..+++. .+ ....+.+..+++. ..+++..+|.++..+|.++-
T Consensus 310 A~dtlg~igst~~G~~-~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 310 AFDTLGQIGSTVEGKQ-LLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHHHhCCHHHHH-HHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9999999998776652 33 2323344444443 34567789999999999884
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-13 Score=113.99 Aligned_cols=61 Identities=30% Similarity=0.556 Sum_probs=51.7
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhc---------------CCCCCCCCCccCCCCCCcccHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE---------------GNRTCPQTRQVLSHTVLIPNHL 134 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~---------------~~~~CP~c~~~l~~~~~~~n~~ 134 (458)
.+..+++.||||++.++||++++|||.||+.||.+|+.. +...||+|+..++...+.|.+.
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 345578999999999999999999999999999999852 2358999999998887777653
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-11 Score=97.90 Aligned_cols=115 Identities=22% Similarity=0.291 Sum_probs=103.3
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc-ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCH-
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL-LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQ- 367 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~- 367 (458)
.+.+.|+++.|+.+|.++++.++..++.+|.+++.. ++.+..+++.|+++.|+++|.++ .++..++++|++|+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356789999999999999999999999999999998 56788888899999999999976 68999999999999954
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
..+..+.+.|+++.|++++.+. +..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 6777788999999999999965 59999999999999874
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-12 Score=122.64 Aligned_cols=71 Identities=30% Similarity=0.508 Sum_probs=64.1
Q ss_pred CCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 73 LLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 73 ~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
...+...+.|+||.+++.+|++++|||+||..||..|+.. ...||.|+..+....+.+|..+..+|+.|..
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999985 4579999999988889999999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=95.04 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=103.4
Q ss_pred HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 333 RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+++.|+++.|+++|.++ .++..++.+|.+++.. ++.+..+.+.|+++.|+++|.++ ++.++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 467889999999999987 6789999999999995 89999999999999999999975 5999999999999999977
Q ss_pred chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 410 RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 410 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+.. ...+...|+++.|++++.+++..+++.|.++|.+|+.
T Consensus 81 ~~~-~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDN-KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHH-HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 644 3555568999999999999999999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-09 Score=101.33 Aligned_cols=280 Identities=13% Similarity=0.046 Sum_probs=194.5
Q ss_pred hhhhhHHhhcC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCC---hhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTD---PGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~---~~~~~~a~~~L~~ls~~ 244 (458)
.+..|.+-.++ +.++-.+...+|.+.+.++.++|..+.+ .||-..++++|+...+.++ .+....+.+.|.|...+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 56666666654 3666677888999999999999999999 9998999999987544433 24555677788887766
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcC----------------------------------------------CHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTG----------------------------------------------TIETRRNAA 277 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~----------------------------------------------~~~~~~~a~ 277 (458)
.+ .+.++++.| +++.|+..+.-+ +++.++...
T Consensus 167 ~~~l~aq~~~~g-Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 167 SRELRAQVADAG-VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred cHHHHHHHHhcc-cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 54 577777764 887555443211 123344444
Q ss_pred HHHHHhhccCcchhHhhccC--------------------------------------------------chHHHHHHhh
Q 012677 278 AALFSLSALDSNKLIIGKLG--------------------------------------------------AMTPLIDLLE 307 (458)
Q Consensus 278 ~~L~~Ls~~~~~~~~i~~~g--------------------------------------------------~i~~Lv~lL~ 307 (458)
.+|...+.++.-+-.+.+.| .++.++.++.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 44444444443222222333 4445556666
Q ss_pred cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc-----C--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHH
Q 012677 308 EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME-----N--SLVDELLAILAMLSSHQDAIEEIGELGAIP 380 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-----~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~ 380 (458)
+.+...+..+.-+|.|++..++++..+++.|.+..|+.+|.. + ..+..++.+|+||+-.-.+|..++.+|.+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvte 405 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTE 405 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHH
Confidence 667777788889999999999999999999999999999963 2 457779999999999999999999999999
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHH-HHHHHHHHHHHHHhh
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSR-AKRKANGILERLNKA 451 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~-~~~~A~~~L~~l~~~ 451 (458)
.++..++.. ++.++-.-++.|..+-...+-..-++......+..|+.+..+.+.. +--..-++|..+-+|
T Consensus 406 aIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 406 AILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 999999954 5888888899999887766533334444444555566666655433 333333444444334
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-12 Score=80.38 Aligned_cols=38 Identities=39% Similarity=0.920 Sum_probs=33.3
Q ss_pred cccccccccCC-ccCCCcccccHHHHHHHHhcCCCCCCCC
Q 012677 82 CPISGEIMTDP-VVLANGQTFDRPCIQRWLDEGNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~~~~~~CP~c 120 (458)
||||++.+.+| +.++|||+||+.|+.+|++. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999997 6789987
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.8e-12 Score=109.04 Aligned_cols=59 Identities=29% Similarity=0.563 Sum_probs=51.3
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCCCCcccHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHTVLIPNHLV 135 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~~~~~n~~l 135 (458)
-..|.|.||++..+|||++.|||.||+.||.+|+... ...||+|+..++...+.|-+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 4578999999999999999999999999999999743 3579999999998888776543
|
|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-11 Score=111.56 Aligned_cols=68 Identities=24% Similarity=0.416 Sum_probs=62.3
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
+-+-+.|-||.++|.-|+++||||+||..||..++.. ++.||.|+.++..+.++.|..+..+|+.|..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4466889999999999999999999999999999985 6689999999999999999999999998864
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-09 Score=104.07 Aligned_cols=227 Identities=18% Similarity=0.121 Sum_probs=161.6
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcC------CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAEN------PLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~------~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 285 (458)
+..++.+|+.. ..+.++....+..+..+...++.+..+... +.....+++++.+++.-++..|+..|..|..
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44555555432 136788888888888877666544333322 1245668889999999999999999999987
Q ss_pred cCcchhHhhccCchHHHHHHhhc----CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHh------ccC---Cc
Q 012677 286 LDSNKLIIGKLGAMTPLIDLLEE----GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKI------MEN---SL 352 (458)
Q Consensus 286 ~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll------~~~---~~ 352 (458)
..+....-...+.++.++.++.+ ++.+.+..|+.+|.+|...++.|..+.+.|+++.|+.++ .+. .+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 76554444336678888888875 345567889999999999999999999999999999999 222 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh
Q 012677 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432 (458)
Q Consensus 353 ~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~ 432 (458)
+..++-+++.|+.+++....+...+.|+.|+++++...-+++..-++++|.||....+......+-..|+.+.+..|...
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 88899999999999999999999999999999999877799999999999999998874334555557777777776654
Q ss_pred --CCHHHHHH
Q 012677 433 --GTSRAKRK 440 (458)
Q Consensus 433 --~~~~~~~~ 440 (458)
+++++.+-
T Consensus 295 k~~Dedl~ed 304 (312)
T PF03224_consen 295 KWSDEDLTED 304 (312)
T ss_dssp --SSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 35555543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=101.43 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=211.6
Q ss_pred hhhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
++|+.|+....++ .+.|+.|+..|..+++ .+|..++. -|.++|+..|... ..|+++...++.++.++..++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcC
Confidence 5789999998433 7899999999999997 47888876 6799999999863 348899999999999997766
Q ss_pred h------h-----------hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC--cchhHhhc-cCchHHHHHH
Q 012677 246 E------N-----------KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD--SNKLIIGK-LGAMTPLIDL 305 (458)
Q Consensus 246 ~------~-----------~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~-~g~i~~Lv~l 305 (458)
+ + ...++...+.|..|+..+..-+..+|..++..|.+|-..- +.+..+.. +.+|..|+.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 3 1 3456666778999999999999999999999999987654 34555554 8899999999
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHh-hCcHHHHHHHhccC------CcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVH-AGAVRVILRKIMEN------SLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
|.+....+|-.++..|..|..+....+++|. .+++..|..++... -+.+.|+..|.||-. +..|+..+.+.+
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 9998889999999999999999999888777 69999999999743 368899999999999 778999999999
Q ss_pred CHHHHHHHHhhcC--Ch-------h---HHhHHHHHHHHHhccCc-----hhHHHHHHhhhhhHHHHHHhhhC--CHHHH
Q 012677 378 AIPCLLRIIREST--CE-------R---NKENCAAILYNICFTDR-----TRTREIMEEENANGTLSRLAENG--TSRAK 438 (458)
Q Consensus 378 ~i~~Lv~ll~~~~--~~-------~---~~~~a~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~ll~~~--~~~~~ 438 (458)
-||.|.++|.... +. . .--.++.++..|..-.. ....+++...+.+..|..++.+. ...++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 9999999886311 11 1 11234455555554221 11224555677888887776543 33466
Q ss_pred HHHHHHHHHHHhh
Q 012677 439 RKANGILERLNKA 451 (458)
Q Consensus 439 ~~A~~~L~~l~~~ 451 (458)
..+.-.+..+-+-
T Consensus 335 tesiitvAevVRg 347 (970)
T KOG0946|consen 335 TESIITVAEVVRG 347 (970)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555555443
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=98.58 Aligned_cols=266 Identities=17% Similarity=0.206 Sum_probs=203.1
Q ss_pred hhhhhHHhhcCCc----HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMSSSL----SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~~~~----~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++-+.+..-. ..-+.|+-.|.+++.+ -..-..+.. ...+..||..|... +.+........|..|+..
T Consensus 261 e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrr-kniV~mLVKaLdr~----n~~Ll~lv~~FLkKLSIf 334 (791)
T KOG1222|consen 261 EIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRR-KNIVAMLVKALDRS----NSSLLTLVIKFLKKLSIF 334 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHH-HhHHHHHHHHHccc----chHHHHHHHHHHHHhhhh
Confidence 3455555554221 1123455567788864 445556666 78999999999875 667777888889999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
.+|+..+...+ +++.|++++....++++......|.|||.+..++..++..|.+|.|+.+|.++.. ..-|+..|+.+
T Consensus 335 ~eNK~~M~~~~-iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~ 411 (791)
T KOG1222|consen 335 DENKIVMEQNG-IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHL 411 (791)
T ss_pred ccchHHHHhcc-HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhh
Confidence 99999999985 9999999999999999999999999999999999999999999999999987532 24588999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
+.++..+..+.....|+.++..+-++ .+....++.-.|||.+..+.+.+++..++..|++.--... +. .-++.
T Consensus 412 S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~-D~---lLmK~ 487 (791)
T KOG1222|consen 412 SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR-DL---LLMKV 487 (791)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc-ch---HHHHH
Confidence 99999999999999999999988765 3444455555799999999999988778888887655443 22 35678
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~ 450 (458)
+.||+.+....+..++. .++-|...+... +..---.+.++|.+|..
T Consensus 488 vRniSqHeg~tqn~Fid---yvgdLa~i~~nd~~E~F~~EClGtlanL~v 534 (791)
T KOG1222|consen 488 VRNISQHEGATQNMFID---YVGDLAGIAKNDNSESFGLECLGTLANLKV 534 (791)
T ss_pred HHHhhhccchHHHHHHH---HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence 89999988755555553 556666666543 44556666777776653
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.7e-11 Score=105.61 Aligned_cols=53 Identities=23% Similarity=0.485 Sum_probs=46.8
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.+..+.|.+|++.+.+|..+||||.||.+||..|... ...||.||..+++..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 4556899999999999999999999999999999986 4469999999887654
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-11 Score=82.36 Aligned_cols=59 Identities=25% Similarity=0.441 Sum_probs=33.8
Q ss_pred CccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHH
Q 012677 78 YEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMI 139 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i 139 (458)
.-+.|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|..+....+++.|..+..+|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 456799999999999976 79999999999887653 499999999999999999988775
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-10 Score=75.78 Aligned_cols=39 Identities=44% Similarity=1.030 Sum_probs=36.0
Q ss_pred cccccccccCCc-cCCCcccccHHHHHHHHh-cCCCCCCCC
Q 012677 82 CPISGEIMTDPV-VLANGQTFDRPCIQRWLD-EGNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~-~l~cgh~fc~~ci~~~~~-~~~~~CP~c 120 (458)
|+||.+.+.+|+ +++|||+||..|+.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999998 556789987
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-10 Score=78.91 Aligned_cols=46 Identities=35% Similarity=0.616 Sum_probs=40.4
Q ss_pred ccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
++.|+||++...+++.+||||. ||..|+.+|+. ....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 5679999999999999999999 99999999998 4668999999875
|
... |
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.5e-11 Score=77.66 Aligned_cols=40 Identities=43% Similarity=0.905 Sum_probs=33.8
Q ss_pred cccccccccc---CCccCCCcccccHHHHHHHHhcCCCCCCCCC
Q 012677 81 RCPISGEIMT---DPVVLANGQTFDRPCIQRWLDEGNRTCPQTR 121 (458)
Q Consensus 81 ~C~ic~~~~~---~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~ 121 (458)
.|+||++.+. .++.++|||.||..||.+|++. +.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4566799999999999999986 56899996
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=94.98 Aligned_cols=220 Identities=14% Similarity=0.026 Sum_probs=148.3
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhc-cCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP-LSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+..+.+.+ ++++.+|..|+..|..+-.... . . ..+++.|..+ +.+ .+..++..|+.+|+++.....
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~-~~a~~~L~~l~~~D----~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----Q-DNVFNILNNLALED----KSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----h-HHHHHHHHHHHhcC----CCHHHHHHHHHHHhccccccc
Confidence 344455544 3556777777777776643211 0 1 2356666666 333 367788888888888754322
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
.. .. .+++.+...+.+++..+|..++.+|..+ ....+|+.|+.+|++.++.++..|+.+|..+..
T Consensus 124 ~~----~~-~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 124 LY----SP-KIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred cc----ch-HHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 11 01 1345566667777888888888888543 334578999999998888999999999998822
Q ss_pred cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 327 LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
.. ..+++.|+.+|.+. .++..|+.+|..+-. .-+++.|++.|.++ .++..++.+|.+
T Consensus 189 ~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~---~~~~~a~~ALg~ 247 (280)
T PRK09687 189 DN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKG---TVGDLIIEAAGE 247 (280)
T ss_pred CC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCC---chHHHHHHHHHh
Confidence 11 24678888899876 678888888876522 24689999999853 366677777777
Q ss_pred HhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHH
Q 012677 405 ICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILER 447 (458)
Q Consensus 405 L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~ 447 (458)
+... -+++.|..++. ..++.++.+|.++|..
T Consensus 248 ig~~------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 248 LGDK------------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred cCCH------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 6551 26788999886 6788999999988763
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-10 Score=75.05 Aligned_cols=36 Identities=36% Similarity=0.859 Sum_probs=23.1
Q ss_pred cccccccccC----CccCCCcccccHHHHHHHHhcC---CCCCC
Q 012677 82 CPISGEIMTD----PVVLANGQTFDRPCIQRWLDEG---NRTCP 118 (458)
Q Consensus 82 C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~---~~~CP 118 (458)
||||.+ |.+ |++|+|||+||+.|+.++++.+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999854 45777
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-08 Score=93.75 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=192.9
Q ss_pred HHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC----CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHH
Q 012677 188 AKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD----TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLID 263 (458)
Q Consensus 188 ~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~ 263 (458)
...+... .+++..+..+++ .|.++.++++++..... +....-..++....-+..+++.-..+...+.++..++.
T Consensus 245 feila~~-aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 245 FEILAKA-AENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHH-hcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 3334444 457888888898 89999999998762111 11222334444444556666655555554447888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 264 SVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 264 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
.+.+.+......++-++.|++..|+++..+++.|.+..|+.+|.. |+.+.+..++.||+||..-..|+..++.+|
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aG 402 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAG 402 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccc
Confidence 999999999999999999999999999999999999999998854 577899999999999999999999999999
Q ss_pred cHHHHHHHhccC--CcHHHHHHHHHHhcCCHH-HHHHHHhc-CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch-hH
Q 012677 339 AVRVILRKIMEN--SLVDELLAILAMLSSHQD-AIEEIGEL-GAIPCLLRIIRESTCERNKENCAAILYNICFTDRT-RT 413 (458)
Q Consensus 339 ~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~-~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-~~ 413 (458)
+.+.++..+... +++-+-+..|..+-...+ ...++.+. ..+..|++.-++++-..+-..+.+.|.-+-.++.- ..
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv 482 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDV 482 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhh
Confidence 999999998744 788888888877755333 44444443 25777777777554345777888888888887531 11
Q ss_pred HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 414 REIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 414 ~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
...+-..|++..++.+........+..|..+|-.+...
T Consensus 483 ~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 483 ILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 22233477888888888777777777777777665543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=94.60 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=162.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..|+..|. .+..+|..|+..|..+-. ..+++.+..++.+. ++.++..|+.+|+.+-....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSK----NPIERDIGADILSQLGMAKR 86 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCcc
Confidence 35667888885 567888889888865432 45677788887764 89999999999999864322
Q ss_pred hhhhhhcCCCCHHHHHHH-HhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDS-VRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
. .. ..++.|..+ ++.++..+|..|+.+|.++....... ...+++.+...+.++++.++..++.+|..+.
T Consensus 87 ~-----~~-~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 87 C-----QD-NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred c-----hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 1 11 267778776 56778999999999999985433211 2235666777888889999999999997652
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
...+++.|+.+|.++ .++..|+.+|..+.. ++ .+++.|+.+|.+. +..++..|+.+|
T Consensus 157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aL 216 (280)
T PRK09687 157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGL 216 (280)
T ss_pred ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 234889999999977 688889999998833 22 3567789999865 599999999999
Q ss_pred HHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 403 YNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 403 ~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
..+-. .-+++.|++.+.+++ ++..|+.+|..+.
T Consensus 217 g~~~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 217 ALRKD------------KRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HccCC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 87432 125678888877765 4455666665554
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-10 Score=102.05 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=60.0
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
+..-+.|-||.++++-|+.++|||+||..||.+++.. +..||+|+.+.....++.+..++.+++.|..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 3345789999999999999999999999999999986 5579999999988888888888888888754
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-10 Score=101.60 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=40.2
Q ss_pred CCccccccccccccCC--------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 77 PYEFRCPISGEIMTDP--------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p--------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.++..||||++.+.++ +.++|||.||+.||.+|+.. ..+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4467899999987653 45689999999999999985 668999999875
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-10 Score=93.73 Aligned_cols=54 Identities=26% Similarity=0.580 Sum_probs=44.7
Q ss_pred CCCccccccccccccC--CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 76 LPYEFRCPISGEIMTD--PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~--p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
-...+.||||++-+.. ||.+.|||.||+.||...++.+ ..||+|++.++...+.
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFH 183 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhe
Confidence 3456899999998865 6778999999999999999864 4799999988766553
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-07 Score=90.25 Aligned_cols=274 Identities=12% Similarity=0.077 Sum_probs=193.0
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
...++..|. .+.-.+..|...|..+....+........ .-.+..|...|++. .+...+..++..|..|...++.|
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l-~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R 178 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDL-DYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYR 178 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHH-HHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHH
Confidence 344555554 45566777888888777543322110000 01223455555543 24677888889999999999999
Q ss_pred hhhhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhc
Q 012677 249 RLVAENPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLC 325 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~ 325 (458)
..+.+.+ +++.|+.+|+.. +.+.+-.++-++.-|+.+++....+...+.|+.|+.+++.. ..++..-++.+|.||.
T Consensus 179 ~~f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 179 FAFVLAD-GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHcc-CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 9999886 899999999863 56889999999999999888777777789999999999875 7788889999999998
Q ss_pred cccc-------chhHHHhhCcHHHHHHHhccC----CcH-------HHHHHHHHHhcCCH--------------------
Q 012677 326 ILLE-------NKRRAVHAGAVRVILRKIMEN----SLV-------DELLAILAMLSSHQ-------------------- 367 (458)
Q Consensus 326 ~~~~-------~~~~i~~~g~v~~Lv~ll~~~----~~~-------~~a~~~L~~La~~~-------------------- 367 (458)
.... ....+++.|+++.+-.+.... ++. +.--..+..+++.+
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se 337 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE 337 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence 7441 234467777766554444322 222 22222223344222
Q ss_pred ----HHHHHHHhcC--CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 368 ----DAIEEIGELG--AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 368 ----~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
+|...+-+.+ .+..|+++|..++++.+..-|+.=+..++.+.|.. +.+++..|+=..+.+|+.+.++.++.+|
T Consensus 338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-r~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-KDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-HHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 3344454444 47889999976666888888888889999877643 5888889999999999999999999999
Q ss_pred HHHHHHHH
Q 012677 442 NGILERLN 449 (458)
Q Consensus 442 ~~~L~~l~ 449 (458)
..+++.|=
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 99998763
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-09 Score=71.62 Aligned_cols=44 Identities=45% Similarity=0.963 Sum_probs=38.4
Q ss_pred ccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 81 RCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
.|+||++.+.+++.++ |||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998888775 9999999999999987677899998753
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-08 Score=94.14 Aligned_cols=213 Identities=19% Similarity=0.143 Sum_probs=154.7
Q ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhcc-----CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGEST-----DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 170 l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~-----g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+-.+++.++++.+.....+..+..+..+++.....+.... ....+++.++..+ |..++..|+..|..+...
T Consensus 60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~----D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN----DSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S----SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC----CHHHHHHHHHHHHHHHHc
Confidence 3445555545677788888888888888776665554411 2578888877764 899999999999998776
Q ss_pred chhhhhhhcCCCCHHHHHHHHhc----CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh------hc-CChHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRT----GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL------EE-GHPLA 313 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL------~~-~~~~~ 313 (458)
.+.+..-... +.++.++..|.+ ++.+.+..++.+|.+|...+.+|..+.+.|+++.|+.+| .+ .+.+.
T Consensus 136 ~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 6543333222 367778887775 345677999999999999999999999999999999999 22 26788
Q ss_pred HHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHH--HHHHHHhcCCHHHHHHHHh
Q 012677 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQD--AIEEIGELGAIPCLLRIIR 387 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~--~~~~i~~~g~i~~Lv~ll~ 387 (458)
+.+++-+++.|+.+++....+...+.++.|+++++.. ++..-++++|.||...+. ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999999999999999999999999999865 678889999999999554 8888888885554444443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-07 Score=86.12 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=153.0
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHH
Q 012677 268 GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRK 346 (458)
Q Consensus 268 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~l 346 (458)
.+.+-++.|..-|..++.+-+|...+...|+..+++..+++++..+|..|+++|...+.+.+ ....+++.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36788898888899999988999999999999999999999999999999999999998775 56678999999999999
Q ss_pred hccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCchhHHHHHHhhh
Q 012677 347 IMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRES-TCERNKENCAAILYNICFTDRTRTREIMEEEN 421 (458)
Q Consensus 347 l~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g 421 (458)
+... ..+.+|+-++..|-. ++.+...+...+|...|...|++. .+...+..++-.+..|....... ..++...|
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~-~d~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD-EDIASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh-hhHHHHhh
Confidence 9855 467889999999998 788999999999999999999962 46899999999999999866543 24666778
Q ss_pred hhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 422 ANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 422 ~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
+...+..+....+..+.+.|...+-.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLS 279 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHH
Confidence 88888888887777777777665543
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-09 Score=67.16 Aligned_cols=39 Identities=56% Similarity=1.126 Sum_probs=35.7
Q ss_pred cccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCC
Q 012677 82 CPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c 120 (458)
|+||++...+++.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556689987
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.4e-07 Score=98.05 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=56.7
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..|++.|. .++.+|..|+..|..+.. .+.++.|+..|.+. +..++..|+.+|..+.....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDG----AAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhccC
Confidence 35667778884 568888888888876532 46778888888764 78888888888876632110
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSL 283 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 283 (458)
..+.|...|+++++.+|..|+.+|..+
T Consensus 685 ----------~~~~L~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 685 ----------PAPALRDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred ----------chHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 123344455555555555555554443
|
|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-09 Score=90.83 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=39.4
Q ss_pred CCCccccccccccccC---------CccCCCcccccHHHHHHHHhcC-----CCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTD---------PVVLANGQTFDRPCIQRWLDEG-----NRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---------p~~l~cgh~fc~~ci~~~~~~~-----~~~CP~c~~~l~ 125 (458)
...+..|+||++...+ ++..+|+|.||..||.+|.... ..+||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3457889999987633 3455899999999999999742 246999999875
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-06 Score=81.51 Aligned_cols=182 Identities=17% Similarity=0.126 Sum_probs=149.5
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCchHHHHH
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLID 304 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ 304 (458)
.+.+-++.|+.-|..++.+=+|.-.++..| +...++..+.+++..+|+.|+++|...+.+.. ....+.+.|+.+.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 477889999999999998888999999987 55557779999999999999999999998764 4778889999999999
Q ss_pred HhhcC-ChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 305 LLEEG-HPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 305 lL~~~-~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
.|.+. +..++..|+.|++.|-.+.. ....+...++...|...|.++ .++.+++..+..|.. ....+..+...|
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99875 55778999999999998775 666788888999999999885 467889999999987 455555555667
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
....++.+.... +..+.+.++.++..+...-
T Consensus 254 f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 254 FQRVLENLISSL-DFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhHHHHHHhhcc-chhhhHHHHHHHHHHHHHH
Confidence 666666666644 4888999998887776544
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-08 Score=92.02 Aligned_cols=62 Identities=21% Similarity=0.422 Sum_probs=45.6
Q ss_pred Cccccccccc-cccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC----CcccHHHHHHH
Q 012677 78 YEFRCPISGE-IMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV----LIPNHLVREMI 139 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~----~~~n~~l~~~i 139 (458)
++..||+|.. ....|- +.+|||.||.+|+..+|..+...||.|+.++.... +.++..+..-|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 3467999997 244553 22799999999999998877779999999998765 44555443333
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-08 Score=96.69 Aligned_cols=69 Identities=26% Similarity=0.497 Sum_probs=55.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcC----CCCCCCCCccCCCCCCccc----HHHHHHHHHHHHHhC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG----NRTCPQTRQVLSHTVLIPN----HLVREMISQWCKEHG 147 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~----~~~CP~c~~~l~~~~~~~n----~~l~~~i~~~~~~~~ 147 (458)
+..||||++...-|+.+.|||.||..||.++|..+ ...||.|+..+...++.|- ..-+.-+..++..||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 67899999999999999999999999999999753 4589999999887554442 233445777888887
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-08 Score=66.52 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=34.6
Q ss_pred ccccccccc---cCCccCCCcccccHHHHHHHHhcCCCCCCCCCc
Q 012677 81 RCPISGEIM---TDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQ 122 (458)
Q Consensus 81 ~C~ic~~~~---~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~ 122 (458)
.|++|.+.+ ..|++++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999988 357788999999999999998 34568999985
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=89.47 Aligned_cols=210 Identities=17% Similarity=0.148 Sum_probs=155.8
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHh-cccCch-hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhcc-C
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILN-LSIHDE-NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSAL-D 287 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~-ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~ 287 (458)
+..|+.-|... +|+..+-.|+.-|.. |+...+ .-..|--. -++|.|+.+|+.. +.++...||++|.+|+.. +
T Consensus 169 ~kkLL~gL~~~---~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 169 AKKLLQGLQAE---SDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHhcccc---CChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 45555555543 377777777777763 454444 22222222 3899999999986 899999999999999864 4
Q ss_pred cchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc--cCCcHHHHHHHHHHhc
Q 012677 288 SNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM--ENSLVDELLAILAMLS 364 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~--~~~~~~~a~~~L~~La 364 (458)
.....+++.++||.|+.-| .-...++.++++.||-.|+.... ..+.++|++...+.+|. +-..+..|+++-.|+|
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999999844 45678899999999999987665 56889999999998885 3368999999999999
Q ss_pred C--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC---chhHHHHHHhhhhhHHHHHHhh
Q 012677 365 S--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD---RTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 365 ~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
. .++.-..++++ +|.|-.+|+..+ .+..+.++-++..++... +++...+. ..|.+.-...|+.
T Consensus 323 ksi~sd~f~~v~ea--lPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEA--LPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLS 390 (1051)
T ss_pred hcCCCccchHHHHH--HHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHh
Confidence 8 56666666654 899999999765 888888888888887643 34443333 3565555555543
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-08 Score=97.97 Aligned_cols=68 Identities=34% Similarity=0.611 Sum_probs=58.0
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
...+++.||||++++.+|++++|||+||+.|+..++. ....||.|+. ... .+.+|..+..+++.+...
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQL 76 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhc
Confidence 3567889999999999999999999999999999998 6678999996 322 667899998888877654
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-08 Score=101.75 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=50.3
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
...-++||+|..-++|.|++.|||.||..|+.+.+....+.||.|+.+|...++.+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34567899999999999999999999999999999888889999999998887654
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-08 Score=73.51 Aligned_cols=40 Identities=43% Similarity=0.874 Sum_probs=32.3
Q ss_pred ccccccccccCCc------------c-CCCcccccHHHHHHHHhcCCCCCCCCC
Q 012677 81 RCPISGEIMTDPV------------V-LANGQTFDRPCIQRWLDEGNRTCPQTR 121 (458)
Q Consensus 81 ~C~ic~~~~~~p~------------~-l~cgh~fc~~ci~~~~~~~~~~CP~c~ 121 (458)
.|+||++.+.+|. . .+|||.||..||.+|++. ..+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 4999999995542 2 379999999999999985 55999997
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-08 Score=90.40 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=44.8
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHH-HHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQR-WLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~-~~~~~~~~CP~c~~~l~~~ 127 (458)
..++.|+||++.+.+|..++|||.||.+||.. |-.+....||.||+.....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 45889999999999999999999999999999 8877666799999876543
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-06 Score=85.80 Aligned_cols=254 Identities=16% Similarity=0.164 Sum_probs=187.4
Q ss_pred hhhhhHHhhc--CCcHHHHHHHHHHHH-HHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS--SSLSDQKEAAKELRL-LTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~--~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+++|++-|. +++..|.+|+..|.. |.-.++..-..|-- .-.+|.|+.+|+.. .+.++...|+.+|.+|+.--
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhc
Confidence 5778888884 467788899988874 44445544433333 46899999999874 57899999999999998654
Q ss_pred h-hhhhhhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 E-NKRLVAENPLAIPLLID-SVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+ ....+++. ++||.|+. ++.-.-.++-+.+..+|..|+... -..|.++|+|-..+..|+=-+..+|..|+....|
T Consensus 244 P~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 244 PRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAAN 320 (1051)
T ss_pred cchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555565 59999886 455567899999999999998743 3567789999999988876677899999999999
Q ss_pred hcccc--cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcC---Ch
Q 012677 324 LCILL--ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIREST---CE 392 (458)
Q Consensus 324 L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~---~~ 392 (458)
+|..- +.=.-++ .++|.|..+|... ...+.++..+..++. .++--+++...|.|.....+|.... +.
T Consensus 321 ~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSN 398 (1051)
T ss_pred HHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccc
Confidence 98743 2222233 4689999999754 566776666666654 5677788999999999999987432 35
Q ss_pred hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh
Q 012677 393 RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432 (458)
Q Consensus 393 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~ 432 (458)
.+....++.|..+|.+.+--.+.+ ...+....|-.++..
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl-~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTL-LKLDIADTLKRILQG 437 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHH-HHhhHHHHHHHHHhc
Confidence 566778888888898877554444 446777777777653
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-06 Score=90.80 Aligned_cols=221 Identities=17% Similarity=0.158 Sum_probs=136.8
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..++.|++.|. ++..+|..|+..|..+... ....+.|...|.+. ++.++..|+.+|..+...
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~-----------~~~~~~L~~~L~~~----d~~VR~~A~~aL~~~~~~-- 714 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEV-----------LPPAPALRDHLGSP----DPVVRAAALDVLRALRAG-- 714 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----------cCchHHHHHHhcCC----CHHHHHHHHHHHHhhccC--
Confidence 35677887775 4577888888888766431 12234555666653 677777777777665311
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc--------cCcc---h----hHhh-----ccCchHHHHHHh
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA--------LDSN---K----LIIG-----KLGAMTPLIDLL 306 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--------~~~~---~----~~i~-----~~g~i~~Lv~lL 306 (458)
-...|+..|++++..+|..|+.+|..+.. .|++ + ..++ ....++.|..++
T Consensus 715 ----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll 784 (897)
T PRK13800 715 ----------DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALT 784 (897)
T ss_pred ----------CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHh
Confidence 12334555566666666666665554310 0000 0 0011 112356677777
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHH
Q 012677 307 EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 307 ~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 384 (458)
+++++.+|..|+.+|..+.... .+++.|+..|.++ .++..|+.+|..+.. ..+++.|+.
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 7777777777777776663221 1234566667665 366667777765532 235689999
Q ss_pred HHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 385 IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 385 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
+|.+. +..++..|+.+|..+. .+ ....+.|...+.+.+..++..|..+|.
T Consensus 846 ~L~D~-~~~VR~~A~~aL~~~~-~~----------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 846 ALTDP-HLDVRKAAVLALTRWP-GD----------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HhcCC-CHHHHHHHHHHHhccC-CC----------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 99865 4999999999998862 12 124567778888889999999999886
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.8e-09 Score=95.36 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=57.9
Q ss_pred CCCCccccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWC 143 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~ 143 (458)
.+.-++.||||+++++.-++++ |+|.||..||..-+..++..||.||+.+.. ..++++.....+|.+..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 3556789999999999988885 999999999999999999999999999865 46777776767776543
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.8e-06 Score=80.43 Aligned_cols=228 Identities=16% Similarity=0.078 Sum_probs=161.9
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh-hhhcC----CCCHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR-LVAEN----PLAIPLLIDSVRTGTIETRRNAAAALFSLS 284 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~----~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 284 (458)
..+..++.+|+.. ...++....+..+..+....+.+. .+.+. ......++.+|..++.-+...++..|..|.
T Consensus 53 ~y~~~~l~ll~~~---~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 53 QYVKTFVNLLSQI---DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHhcc---CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 4567778888764 356777777777766665555433 33332 235566788999888889999999999987
Q ss_pred ccCcch-hHhhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----CcHHHHHH
Q 012677 285 ALDSNK-LIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----SLVDELLA 358 (458)
Q Consensus 285 ~~~~~~-~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~ 358 (458)
...... ......-.+.-|...|+++ +...+..++.+|..|...++.|..+.+.++++.|+.+|+.. .++..++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 643221 1000011223444555544 46778888999999999999999999999999999999753 56888999
Q ss_pred HHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-----hhHHHHHHhhhhhHHHHHHhhhC
Q 012677 359 ILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-----TRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 359 ~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-----~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
+++-|+.+++....+...+.|+.|+++++.+.-+++-.-++.+|.||...+. ......+-+.|..+.+..|....
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 9999999998888888889999999999977668999999999999998542 12223344456665555555442
Q ss_pred --CHHHHHH
Q 012677 434 --TSRAKRK 440 (458)
Q Consensus 434 --~~~~~~~ 440 (458)
++++.+-
T Consensus 290 ~~DedL~ed 298 (429)
T cd00256 290 YDDEDLTDD 298 (429)
T ss_pred CCcHHHHHH
Confidence 5554443
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-08 Score=68.39 Aligned_cols=45 Identities=29% Similarity=0.721 Sum_probs=31.5
Q ss_pred CCccccccccccccCCccC-CCcccccHHHHHHHHh-cCCCCCCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLD-EGNRTCPQTR 121 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~-~~~~~CP~c~ 121 (458)
.-.+.|||++..|++||.- .|||+|++..|.+|+. .+...||+.+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 4467899999999999985 7999999999999994 3355899954
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-05 Score=83.44 Aligned_cols=269 Identities=14% Similarity=0.121 Sum_probs=164.7
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIP 259 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~ 259 (458)
..+|..|+.++..++...+.++.........+|.++..+......+|.+....++.+|-.+....+ .-+..... ++.
T Consensus 173 ~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~ 250 (1075)
T KOG2171|consen 173 SPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQ 250 (1075)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHH
Confidence 348889999998888766544444333234678788777765444566666777777766654433 11111111 333
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhhccCc-------------------------------------------ch---h
Q 012677 260 LLIDSVRTG--TIETRRNAAAALFSLSALDS-------------------------------------------NK---L 291 (458)
Q Consensus 260 ~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-------------------------------------------~~---~ 291 (458)
.-..+.++. +..+|..|...|..++.+.. +. .
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~ 330 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAE 330 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHH
Confidence 333333333 45566666655555444310 00 0
Q ss_pred ----H----hhccCchHHHH----HHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHH
Q 012677 292 ----I----IGKLGAMTPLI----DLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELL 357 (458)
Q Consensus 292 ----~----i~~~g~i~~Lv----~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~ 357 (458)
. ++-.-+.|++. .+|.+.+..-|..|+.+|..++........-.=..+++..+..|.++ .++..|+
T Consensus 331 ~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 331 QALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred HHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 0 00011333333 45566777788888888877765433211111125677777888887 5788899
Q ss_pred HHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhH-HHHHHhhhC
Q 012677 358 AILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR-TREIMEEENANG-TLSRLAENG 433 (458)
Q Consensus 358 ~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~-~L~~ll~~~ 433 (458)
.++..++. .|+..+.. .+-.++.|+..+.+..+.+++.+|+.+|.|+....... ....+ .+.+. .+..|.+++
T Consensus 411 naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCC
Confidence 99999998 35444444 44567889999988777899999999999998876532 11111 23344 333456788
Q ss_pred CHHHHHHHHHHHHHHHhhHhh
Q 012677 434 TSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++.+++.++.+|...+..++.
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhh
Confidence 999999999999988876654
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=87.71 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=40.8
Q ss_pred cccccccccccCC---ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 80 FRCPISGEIMTDP---VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 80 ~~C~ic~~~~~~p---~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
++|.||+|.+++- ++|||+|.||..||..|+.+....||+|++.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 6899999999754 56899999999999999987656799999876543
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.5e-08 Score=88.21 Aligned_cols=67 Identities=21% Similarity=0.510 Sum_probs=55.9
Q ss_pred CCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT----VLIPNHLVREMISQW 142 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~----~~~~n~~l~~~i~~~ 142 (458)
++.+..+|++|..+|.|+.++ .|=|+||++||.++|.. ..+||.|+..+... .+.++.+++.++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 355677899999999999887 59999999999999986 77899999877543 467788888887644
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=69.61 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=119.8
Q ss_pred hhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHH
Q 012677 293 IGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDA 369 (458)
Q Consensus 293 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~ 369 (458)
+...+.+..||.=.... +.+.++....-|.|.+-++-|-.-+.+..+++..+.-|..+ .+.+-+++.|+|+|.++.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 44456777888877664 88999999999999999999999999999999999999877 5788999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
++.|++++++|.++..+.++. +.+.-.|+.+|+.|+.+..... ..+.....+..+.+...+.+.+.+-.|...|...
T Consensus 92 ~~~I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~Rt~r-~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGERTER-DELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCcccchh-HHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999654 8888889999999998776432 3332234444444444444445555555555443
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-07 Score=99.70 Aligned_cols=121 Identities=29% Similarity=0.433 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCCCcChhHHHHHHHHHHhh--cccc-c----------cCCCCcCCCCCCCCcCCCCCCccccccccccc
Q 012677 23 LQRLVKAILDEDDYGGLQVTNEALRVLSCL--KDLK-L----------KKPHSFKGGAAGDDHLLGLPYEFRCPISGEIM 89 (458)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~ 89 (458)
...|+.+++.|+++|+.+.|.++.+.+++. +... + +...... .......++.|++|.-|+...+|
T Consensus 803 ~~~F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~--~~eee~l~dvpdef~DPlm~Tlm 880 (943)
T KOG2042|consen 803 EPSFVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEEFSELAERVEATASID--AEEEEELGDVPDEFLDPLMSTLM 880 (943)
T ss_pred chhHHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccCchhhhCccccccC
Confidence 678999999999999999999999999332 2221 0 0000001 11135567799999999999999
Q ss_pred cCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHh
Q 012677 90 TDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 90 ~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
.|||.+| .|++.||+-|.+++-. ..+-|+||.+++...+.||-.+++-|+.|..++
T Consensus 881 ~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 881 SDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 9999998 9999999999999985 557999999999999999999999999998764
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-05 Score=70.35 Aligned_cols=269 Identities=17% Similarity=0.167 Sum_probs=188.0
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
+..++..+. .++.+|..|+..+..++.. ..+.....+...++.|..++... ++ .+.|+.+|.|++....-+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~----~~--~~~a~~alVnlsq~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL----DP--AEPAATALVNLSQKEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc----cc--ccHHHHHHHHHHhhHHHH
Confidence 445777774 5688999999999888875 55555555456678888888864 33 678999999999999888
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-------cCchHHHHHHhhcC-C-hHHHHHHHH
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-------LGAMTPLIDLLEEG-H-PLAMKDVAS 319 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~lL~~~-~-~~~~~~a~~ 319 (458)
+.+... .+..++.++-.+....-...+.+|.||+..++....+.. .|.++..+...+.+ + ..-..+-+.
T Consensus 77 ~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 77 KKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 888886 778888888888778888899999999998866444321 34444444444443 2 234467788
Q ss_pred HHHHhcccccchhHHHhhCcHHH--HHHHhccC-CcH-HHHHHHHHHhcCCHHHHHHHHhcC--CHHHHH----------
Q 012677 320 AIFSLCILLENKRRAVHAGAVRV--ILRKIMEN-SLV-DELLAILAMLSSHQDAIEEIGELG--AIPCLL---------- 383 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~--Lv~ll~~~-~~~-~~a~~~L~~La~~~~~~~~i~~~g--~i~~Lv---------- 383 (458)
.+.||+.....|..+.+...++. |+.+=+.+ .++ ...+++|.|.|........+++.+ .+|.|+
T Consensus 155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~s 234 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELS 234 (353)
T ss_pred HHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccC
Confidence 88999999999888777653332 22222212 343 338899999999888888887744 233333
Q ss_pred -----------HHHh----hcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHH
Q 012677 384 -----------RIIR----ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILER 447 (458)
Q Consensus 384 -----------~ll~----~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~ 447 (458)
+++. ...++.++..-+.+|.-||....++ +.++.-|+.+.+.++=. ..++.+.+.+-.+.+.
T Consensus 235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR--e~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR--EVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH--HHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2222 1235889999999999999988664 77776776655555432 2467788888888887
Q ss_pred HHh
Q 012677 448 LNK 450 (458)
Q Consensus 448 l~~ 450 (458)
+-+
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 766
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.7e-05 Score=82.64 Aligned_cols=135 Identities=21% Similarity=0.239 Sum_probs=75.6
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
+...++.++ .+...++-+.-.+..+...+++.... ++..|.+-|.+. ++.++..|+.+|.++..
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~~~----n~~~~~lAL~~l~~i~~----- 108 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLNSP----NPYIRGLALRTLSNIRT----- 108 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHCSS----SHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhcCC----CHHHHHHHHhhhhhhcc-----
Confidence 334455543 44555555555555555554442111 133444444443 66777777777777662
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
..++.. +++.+..++.++++.+|..|+.++..+...++. .+... .++.|..+|.+.++.++..|+.++..+
T Consensus 109 ~~~~~~--l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 109 PEMAEP--LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHH--HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred cchhhH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 122221 455666777777777777777777776554322 11112 466777777666777777777777777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-07 Score=85.22 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=39.5
Q ss_pred cccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..|.||++-+.. -+++||.|.||.+|+.+|+......||+||.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 469999987742 35679999999999999999666789999999874
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.8e-06 Score=84.43 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=178.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhc
Q 012677 130 IPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGES 208 (458)
Q Consensus 130 ~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 208 (458)
..++..+++.--++......-|. . -.-.+..+.+.+. +++..|..|+..|.++.. +....
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~---------~---~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~----- 113 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPE---------L---LILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE----- 113 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHH---------H---HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH-----
T ss_pred CCCHHHHHHHHHHHHHHhhcchh---------H---HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh-----
Confidence 45667777776666654322111 0 0124556666774 567888899999988873 33332
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
-.++.+..++.+. ++.++..|+.++..+....++ .+... .++.+..+|...++.++..|+.++..+...++
T Consensus 114 -~l~~~v~~ll~~~----~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~ 184 (526)
T PF01602_consen 114 -PLIPDVIKLLSDP----SPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDD 184 (526)
T ss_dssp -HHHHHHHHHHHSS----SHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHH
T ss_pred -HHHHHHHHHhcCC----chHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcc
Confidence 3456677777764 889999999999888765442 22222 57889999999999999999999999911111
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~ 366 (458)
.-.. .-...++.|.+++...++-.+...+..|..++........- ...++.+..++.+. .+.-.|+.++..+...
T Consensus 185 ~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 185 SYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 1011 11334555555666778888888888888887655432211 45677777777654 5677788888888776
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGIL 445 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L 445 (458)
+. .-..+++.|+.++.+ .++.++..++..|..|+...+. .+. ........+. +.+..++.++..+|
T Consensus 262 ~~-----~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~~~----~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 262 PE-----LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSNPP----AVF---NQSLILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HH-----HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHCHH----HHG---THHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred hH-----HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhcccch----hhh---hhhhhhheecCCCChhHHHHHHHHH
Confidence 66 223447888888884 4477888888888888876622 121 1122223333 56677888888877
Q ss_pred HHHHhhHh
Q 012677 446 ERLNKAAL 453 (458)
Q Consensus 446 ~~l~~~~~ 453 (458)
..++...+
T Consensus 329 ~~l~~~~n 336 (526)
T PF01602_consen 329 YKLANESN 336 (526)
T ss_dssp HHH--HHH
T ss_pred hhcccccc
Confidence 77775443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=79.92 Aligned_cols=141 Identities=9% Similarity=0.071 Sum_probs=113.8
Q ss_pred cCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHH
Q 012677 308 EGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv 383 (458)
..+...+.+|+-.+.+++..-. -+.-.-+..+..+||+++.+| .+...++++|.|+.. ....|..++..|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 3467778888888888776543 233355568999999999988 567889999999988 788999999999999999
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 384 RIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.++.+.+ ..++..++|+|+++..+..+..+......-....++.+..+.+..+++++-.+|+|+.
T Consensus 468 s~~~~~~-~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPD-FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCC-chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 9999654 9999999999999999876543333332334566788888999999999999999986
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-07 Score=86.05 Aligned_cols=49 Identities=27% Similarity=0.585 Sum_probs=40.7
Q ss_pred CCcccccccccccc-C------------CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMT-D------------PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~-~------------p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.++-.|.||++.|. . |..+||||.+|.+|+..|++. ..+||.||.++-.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcccc
Confidence 45678999998853 2 467899999999999999985 6799999999644
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-05 Score=73.08 Aligned_cols=277 Identities=12% Similarity=0.075 Sum_probs=184.7
Q ss_pred hhhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhc-----cCChHHHhhccCCCCCCCChhHHHHHHHHHHh
Q 012677 168 SHLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGES-----TDAIPLLLSPLSPGRADTDPGLLEDLITTILN 240 (458)
Q Consensus 168 ~~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ 240 (458)
..+..+|..++. ..+.....+..+..+-..+..--..+... .-.-+..+.+|... +.-+.+.+.+++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~----d~~iv~~~~~Ils~ 140 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ----DTFIVEMSFRILSK 140 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC----ChHHHHHHHHHHHH
Confidence 567777777762 24555566666666555443332223221 11246667777764 77777778888877
Q ss_pred cccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc--CChHHHHHH
Q 012677 241 LSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE--GHPLAMKDV 317 (458)
Q Consensus 241 ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a 317 (458)
++....-+....+-.-....|...+++ .+.+....|++.|-.+...+++|..++...++..|+..+.+ .+-.++...
T Consensus 141 la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 141 LACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 765433222111111122344556666 57788888999999999999999999998889999998843 377888888
Q ss_pred HHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCH-------HH------------------
Q 012677 318 ASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQ-------DA------------------ 369 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~-------~~------------------ 369 (458)
+-+++-|..++.....+-..+.++.|.+++++. .+..-+++++.|+.... +.
T Consensus 221 ifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 888888888887776676668888888888765 46666777777776522 11
Q ss_pred --------------------------------------------------------HHHHHhcC--CHHHHHHHHhhcCC
Q 012677 370 --------------------------------------------------------IEEIGELG--AIPCLLRIIRESTC 391 (458)
Q Consensus 370 --------------------------------------------------------~~~i~~~g--~i~~Lv~ll~~~~~ 391 (458)
...+.+.+ .+..|+++|+.+.+
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND 380 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence 11221111 34555566665444
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
+.+-.-|+.=+.....+.|. -+.+++..|+-..+.+|+.+.+++++-+|..+++.|=
T Consensus 381 p~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 55555555556666655543 3588888999999999999999999999999988764
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-06 Score=67.75 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=105.5
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
.+..||.-+.. .+.+.++....-|.|++.++.|-..+.+..+++..|..|...+....+.+.+.|+|+|.+..|..-|+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 44556655544 58899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHH
Q 012677 336 HAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCL 382 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~L 382 (458)
+++++|.++..++++ ...-.++.+|..|+.. ..-|..+....++..+
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 999999999999988 4566688888888874 4457777654433333
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-05 Score=78.43 Aligned_cols=214 Identities=17% Similarity=0.149 Sum_probs=165.4
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhhccC
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALD 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~ 287 (458)
..|+.|++-+.+. +-.+-++.|+..|..+++. +|..+... ++++|+..|+.. ++++...+..++.++..++
T Consensus 22 ETI~kLcDRvess---TL~eDRR~A~rgLKa~srk--YR~~Vga~--Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 22 ETIEKLCDRVESS---TLLEDRRDAVRGLKAFSRK--YREEVGAQ--GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHH--HHHHHHHc--ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 3566777666543 2446678888888877753 66777765 577799999875 8999999999999998776
Q ss_pred c------c-h----------hH-hhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--chhHH-HhhCcHHHHHHH
Q 012677 288 S------N-K----------LI-IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--NKRRA-VHAGAVRVILRK 346 (458)
Q Consensus 288 ~------~-~----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~~~~i-~~~g~v~~Lv~l 346 (458)
+ + + +. |-..+-|..|+..+...+-.+|..+...|.+|-.+.. .+..+ +..-+|..|+.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 3 2 2 12 2347889999999999999999999999999976554 44444 445899999999
Q ss_pred hccC--CcHHHHHHHHHHhcCCH-HHHHHHHhcCCHHHHHHHHhhc---CChhHHhHHHHHHHHHhccCchhHHHHHHhh
Q 012677 347 IMEN--SLVDELLAILAMLSSHQ-DAIEEIGELGAIPCLLRIIRES---TCERNKENCAAILYNICFTDRTRTREIMEEE 420 (458)
Q Consensus 347 l~~~--~~~~~a~~~L~~La~~~-~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 420 (458)
|.+. .++..++-.|..|..+. ..++.++=.++...|..++... +..-+.+.|+..|-||-..+..++ .+..+.
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ-~~FrE~ 253 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ-NFFREG 253 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh-hHHhcc
Confidence 9987 68889999999999954 4455555588999999999852 234678999999999999887665 566678
Q ss_pred hhhHHHHHHhh
Q 012677 421 NANGTLSRLAE 431 (458)
Q Consensus 421 g~~~~L~~ll~ 431 (458)
+.++.|.+++.
T Consensus 254 ~~i~rL~klL~ 264 (970)
T KOG0946|consen 254 SYIPRLLKLLS 264 (970)
T ss_pred ccHHHHHhhcC
Confidence 99999998864
|
|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-07 Score=65.80 Aligned_cols=35 Identities=31% Similarity=0.696 Sum_probs=28.5
Q ss_pred CccC-CCcccccHHHHHHHHhcC--CCCCCCCCccCCC
Q 012677 92 PVVL-ANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSH 126 (458)
Q Consensus 92 p~~l-~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~ 126 (458)
|++. .|+|.|+..||.+|++.. ...||.||++...
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5444 699999999999999853 4689999998643
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=86.42 Aligned_cols=124 Identities=26% Similarity=0.320 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCcChhHHHHHHHHHHhhc---cccc--------cCCCCcCCCCCCCCcCCCCCCccccccccccccCC
Q 012677 24 QRLVKAILDEDDYGGLQVTNEALRVLSCLK---DLKL--------KKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDP 92 (458)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~~p 92 (458)
-+|+.+++.|+++++.+.+..|.+++.+.. +..+ +.+.........++..+++||+|.-|+...+|+||
T Consensus 788 s~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPDeFlDPLmftimkdP 867 (929)
T COG5113 788 SKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFLDPLMFTIMKDP 867 (929)
T ss_pred HHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhhCchhhhcccCC
Confidence 579999999999999999999988876533 0000 00000000111145578899999999999999999
Q ss_pred ccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 93 VVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 93 ~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
|.+| .|-+.+|+-|..++-. ..+.|+-|.|++..++.||..+|+.|..|....+.
T Consensus 868 V~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 868 VKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred eecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 9997 7889999999999985 45899999999999999999999999999766543
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-06 Score=78.42 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=57.0
Q ss_pred cccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCcc-CCCCCCcccHHHHHHHHHHHHHh
Q 012677 80 FRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQV-LSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~-l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
+.||+|..++++|+.++ |||+||..||..-+-...+.||.|... +-...+.|+...+.-|+.+...+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 78999999999999995 899999999999887778899999653 44567889988888888887643
|
|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=86.39 Aligned_cols=71 Identities=25% Similarity=0.454 Sum_probs=57.3
Q ss_pred CcCCCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc-cHHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP-NHLVREMISQW 142 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~-n~~l~~~i~~~ 142 (458)
....++.+++.||+|+..+.||+.. .|||.||+.|+..|+.. +..||.|+..+......+ ....+..+.+|
T Consensus 13 ~~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 13 HLGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred ccCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 4444577889999999999999995 99999999999999997 779999999987765554 34455666554
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.2e-05 Score=71.80 Aligned_cols=243 Identities=14% Similarity=0.180 Sum_probs=172.7
Q ss_pred hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHH
Q 012677 201 FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR-TGTIETRRNAAAA 279 (458)
Q Consensus 201 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~ 279 (458)
.+..|.. .|++..|+.++.+... ...++..+...|..+. ..+|+..++..| ...++.+-+ ....+.....+++
T Consensus 172 LCD~iR~-~~~lD~Llrmf~aPn~--et~vRve~~rlLEq~~-~aeN~d~va~~~--~~~Il~lAK~~e~~e~aR~~~~i 245 (832)
T KOG3678|consen 172 LCDAIRL-DGGLDLLLRMFQAPNL--ETSVRVEAARLLEQIL-VAENRDRVARIG--LGVILNLAKEREPVELARSVAGI 245 (832)
T ss_pred hhhHhhc-cchHHHHHHHHhCCch--hHHHHHHHHHHHHHHH-hhhhhhHHhhcc--chhhhhhhhhcCcHHHHHHHHHH
Confidence 4556666 7999999999998622 2356778888887665 445777777764 332333333 3478889999999
Q ss_pred HHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc--cchhHHHhhCcHHHHHHHhccC--CcHH
Q 012677 280 LFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL--ENKRRAVHAGAVRVILRKIMEN--SLVD 354 (458)
Q Consensus 280 L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~--~~~~ 354 (458)
|.++-.+. +.+..++..|++..++-..+..+|.+...++-+|.|++.+. +.+.++++..+.+-|.-+-.+. -++.
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 99998765 45889999999999999999999999999999999998765 5778899999999998887765 3577
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---HHHHHHHHhhc-------------------------CChhHHhHHHHHHHHHh
Q 012677 355 ELLAILAMLSSHQDAIEEIGELGA---IPCLLRIIRES-------------------------TCERNKENCAAILYNIC 406 (458)
Q Consensus 355 ~a~~~L~~La~~~~~~~~i~~~g~---i~~Lv~ll~~~-------------------------~~~~~~~~a~~~L~~L~ 406 (458)
.|+-+.+.|+.+.+.-..+.+.|. +.+|+..+.-+ ++......++++.+-.+
T Consensus 326 ~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~ 405 (832)
T KOG3678|consen 326 HACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCA 405 (832)
T ss_pred HHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHH
Confidence 788888889988877777766663 34444322100 01233344555554322
Q ss_pred cc---C-chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 407 FT---D-RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 407 ~~---~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.. . .++ ..+..+-|+++.|-++..+.+.....-|..+|+.+.+
T Consensus 406 EAaIKs~Q~K-~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 406 EAAIKSLQGK-TKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 11 1 122 2556678999999998887777777788888887764
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=70.91 Aligned_cols=257 Identities=15% Similarity=0.074 Sum_probs=176.6
Q ss_pred HHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC--
Q 012677 191 LRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG-- 268 (458)
Q Consensus 191 L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-- 268 (458)
|..+-+.++..+..+.- ....+.+..++-+. +.+++..+..+++.+..+...-..+.+.+ +--.++..|...
T Consensus 7 Lv~l~~~~p~l~~~~~~-~~~~~~i~~~lL~~----~~~vraa~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVL-SFFGERIQCMLLSD----SKEVRAAGYRILRYLISDEESLQILLKLH-IDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHhCchhhhhhhH-HHHHHHHHHHHCCC----cHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhcccCC
Confidence 33444445555544443 33444455444332 57999999999999999998888888864 555566777654
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~ 348 (458)
+..-|++|...++.+.....+... ...|++..||.+..+.++..+..|+.+|..|+..++ ..++.+||+..|++.+.
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~ 157 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALI 157 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHH
Confidence 566789999999988776544332 367899999999999999999999999999987765 44578999999999998
Q ss_pred cC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhc-------CC--hhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 349 EN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRES-------TC--ERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 349 ~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~--~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
++ ++.+..+.++..+..+|..|+.+...--+..++.-+.+. +. ...+..+..+...|-++++ -..--.
T Consensus 158 d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll~l~~ 236 (371)
T PF14664_consen 158 DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LLYLSM 236 (371)
T ss_pred hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-eeeeec
Confidence 76 677789999999999999998886544455555444322 11 1333333333333434443 110011
Q ss_pred HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhhhc
Q 012677 418 EEENANGTLSRLAENGTSRAKRKANGILERLNKAALIVHT 457 (458)
Q Consensus 418 ~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~ 457 (458)
....++..|+..+...++.+++....++..+-+..+..|+
T Consensus 237 ~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~ 276 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWT 276 (371)
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcc
Confidence 1124677788888888889999998888887776665543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.7e-05 Score=79.11 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=157.5
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--hhhhhhcCC
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--NKRLVAENP 255 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~ 255 (458)
|.+...|..|+.+|..++.+.........+ .+++.++..|.++ .+.++-.|+.+++.++.+=. ..+...+.
T Consensus 359 S~~w~~R~AaL~Als~i~EGc~~~m~~~l~--~Il~~Vl~~l~Dp----hprVr~AA~naigQ~stdl~p~iqk~~~e~- 431 (1075)
T KOG2171|consen 359 STEWKERHAALLALSVIAEGCSDVMIGNLP--KILPIVLNGLNDP----HPRVRYAALNAIGQMSTDLQPEIQKKHHER- 431 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHcccHHHHHHHHH--HHHHHHHhhcCCC----CHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-
Confidence 456888999999999999887766555444 5677777777775 89999999999999997632 34444442
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccch
Q 012677 256 LAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENK 331 (458)
Q Consensus 256 ~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~ 331 (458)
+.|.|+..+.+. +..++.+|+.+|.|++....+ ..+.- .+.+.+++. ++.++++.+++.++.+|...+..-+..
T Consensus 432 -l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 432 -LPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred -ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 778899888875 789999999999999875432 23322 556664444 556678999999999999998766655
Q ss_pred hHHHhhCcHHHHHHHhccC------CcHHHHHHHHHHhcCCHHHHHHHHhc--CCHHHHHHH---HhhcCChhHHhHHHH
Q 012677 332 RRAVHAGAVRVILRKIMEN------SLVDELLAILAMLSSHQDAIEEIGEL--GAIPCLLRI---IRESTCERNKENCAA 400 (458)
Q Consensus 332 ~~i~~~g~v~~Lv~ll~~~------~~~~~a~~~L~~La~~~~~~~~i~~~--g~i~~Lv~l---l~~~~~~~~~~~a~~ 400 (458)
-.-.-.-.+|.|...|... .++.+.+..+.-++ .--+|+.+... -.+..+..+ ... .++........
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AVGke~F~~~a~eliqll~~~~~~~~~-~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAVGKEKFLPLAEELIQLLLELQGSDQD-DDDPLRSYMIA 587 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHhhhhhhhHhHHHHHHHHHhhcccchh-hccccHHHHHH
Confidence 5444456788888888654 24444444443332 23345555332 234444444 222 23666777778
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHH
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSR 428 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ 428 (458)
...++|..-......++ .-.+++|.+
T Consensus 588 ~warmc~ilg~~F~p~L--~~Vmppl~~ 613 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFL--PVVMPPLLK 613 (1075)
T ss_pred HHHHHHHHhchhhHhHH--HHHhHHHHH
Confidence 88888875544443444 234444443
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-05 Score=76.48 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=120.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc----chhHhhccCchHHHHHHhhcC-------ChHHHHHHHHHHHHhc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS----NKLIIGKLGAMTPLIDLLEEG-------HPLAMKDVASAIFSLC 325 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~ 325 (458)
.+...+.+|+..+.+-|-.+...+.++...++ .+..|.++=+.+.|-++|+++ ....+.-|+.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45567788998886667777777788876554 244577755689999999873 2345677888899999
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
..++....---.+-||.|++.+..+ .+...|+.+|..++.++++++.+++.|+++.|++.+.+ .+...+.|+.+|
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHH
Confidence 8666443322346799999999765 56889999999999999999999999999999999996 378899999999
Q ss_pred HHHhccCc
Q 012677 403 YNICFTDR 410 (458)
Q Consensus 403 ~~L~~~~~ 410 (458)
.+++....
T Consensus 164 ~~Lls~~~ 171 (543)
T PF05536_consen 164 LNLLSRLG 171 (543)
T ss_pred HHHHHhcc
Confidence 99988654
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.15 E-value=4e-06 Score=54.39 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=37.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
++++++.+++.|+++.|+++|.+. +..++++|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 578999999999999999999954 59999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00022 Score=73.75 Aligned_cols=238 Identities=16% Similarity=0.086 Sum_probs=160.7
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch----hhhhhhcCCCCHHHHHHHHhcC-------CHHHHHHHHHH
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE----NKRLVAENPLAIPLLIDSVRTG-------TIETRRNAAAA 279 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~ 279 (458)
.+..-+.+|+.. +.+-+-.++..+..+..+.+ .++.+.++- +...|-++|+++ ....+.-|+.+
T Consensus 6 ~l~~c~~lL~~~----~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~ai-g~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSA----DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAI-GFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccC----CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc-ChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 456667788775 55667788888888887655 244566664 467778899873 36678889999
Q ss_pred HHHhhccCcchhHhhccCchHHHHHHhhcCCh-HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHH
Q 012677 280 LFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP-LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELL 357 (458)
Q Consensus 280 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~ 357 (458)
|..++..++.+..=--.+-||.|+.++..++. .+...|+.+|..++.+++++..+++.|+++.|.+.+.++ ...+.++
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al 160 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIAL 160 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHH
Confidence 99999866443221114569999999988766 999999999999999999999999999999999999876 5688899
Q ss_pred HHHHHhcCCHHHHHHHHh-c----CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhh----HHHHH
Q 012677 358 AILAMLSSHQDAIEEIGE-L----GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENAN----GTLSR 428 (458)
Q Consensus 358 ~~L~~La~~~~~~~~i~~-~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~----~~L~~ 428 (458)
.+|.+++...... ..-+ . ..++.|-+.+...+ ...+-..+..|..+-...+...........+. ..|..
T Consensus 161 ~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 161 NLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 9999987743211 1111 1 22344444444333 55666778888877665531100111122333 33445
Q ss_pred Hhhh-CCHHHHHHHHHHHHHHHhhHhhh
Q 012677 429 LAEN-GTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 429 ll~~-~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
++++ ..+..+..|..+...|-.....+
T Consensus 239 iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 239 ILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 5554 46677777777777666554333
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-06 Score=83.82 Aligned_cols=69 Identities=29% Similarity=0.542 Sum_probs=56.5
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC-----CcccHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV-----LIPNHLVREMISQWCK 144 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~-----~~~n~~l~~~i~~~~~ 144 (458)
.+..+|.|-||+..+.+||++||||+||..||.+.+. ....||.|+.++.... ..+|+...++|..|+.
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999999999777 4568999999987531 2236666788887764
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-06 Score=82.50 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccccccCCCCcCCCCCCCCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc----CCCCCC
Q 012677 43 NEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE----GNRTCP 118 (458)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~----~~~~CP 118 (458)
..++.++.++++..-........ ......++...+..|.+|.+.-+|++...|-|.||+.||.+|... .+-+||
T Consensus 502 AnIF~LitRmRQ~aDHP~LVl~S--~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP 579 (791)
T KOG1002|consen 502 ANIFTLITRMRQAADHPDLVLYS--ANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP 579 (791)
T ss_pred HHHHHHHHHHHHhccCcceeeeh--hhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc
Confidence 47788888888665433222111 012334445667789999999999999999999999999998763 235999
Q ss_pred CCCccCCCC
Q 012677 119 QTRQVLSHT 127 (458)
Q Consensus 119 ~c~~~l~~~ 127 (458)
+|..+++.+
T Consensus 580 ~C~i~LsiD 588 (791)
T KOG1002|consen 580 VCHIGLSID 588 (791)
T ss_pred ccccccccc
Confidence 999998765
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.9e-05 Score=77.37 Aligned_cols=165 Identities=17% Similarity=0.141 Sum_probs=122.1
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
+++.+.+.. +...+.......+...+.+|+-.+.+++..-+. +...-...++.+||+++..++..++..++++|.||.
T Consensus 369 ~~k~~l~~~-t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 369 LKKEILETT-TESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred HHHHHHHHH-HHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 344444432 233333333345677888888888888754332 444555778999999999999999999999999998
Q ss_pred c-cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHH--HHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 326 I-LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDA--IEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 326 ~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
- ..+-+..+++.|+|..|..++.+. ..+..++++|+++..+.+. +.+...-=....++.+..+. +..+|+.+..
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fq 526 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQ 526 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHH
Confidence 6 556788899999999999999987 6789999999999995433 33333333456677777765 5999999999
Q ss_pred HHHHHhccCchhH
Q 012677 401 ILYNICFTDRTRT 413 (458)
Q Consensus 401 ~L~~L~~~~~~~~ 413 (458)
.|+||.-+.....
T Consensus 527 llRNl~c~~~~sv 539 (678)
T KOG1293|consen 527 LLRNLTCNSRKSV 539 (678)
T ss_pred HHHHhhcCcHHHH
Confidence 9999998765443
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.3e-06 Score=54.83 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=37.3
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
++++..+++.|+||+|+.+|+++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-06 Score=90.06 Aligned_cols=48 Identities=31% Similarity=0.656 Sum_probs=42.1
Q ss_pred CCccccccccccccC-----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 77 PYEFRCPISGEIMTD-----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~-----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
..+..|+||.+.|.. |..++|||.||..|+..|++. ..+||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 446789999999988 788999999999999999996 668999999443
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0017 Score=62.83 Aligned_cols=257 Identities=15% Similarity=0.177 Sum_probs=175.4
Q ss_pred HHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch------h----hhhhhcCCC
Q 012677 187 AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE------N----KRLVAENPL 256 (458)
Q Consensus 187 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~------~----~~~i~~~~~ 256 (458)
.+..+..++. -|..-..+++ .++++.|+.+|... ++++....+..|..|+-.+- . ...+++ |+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lve-ln~V~slL~LLgHe----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~ 176 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVE-LNAVQSLLELLGHE----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQ 176 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHH-hccHHHHHHHhcCC----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-cc
Confidence 4555555665 4666667778 89999999999974 78888888888888864321 2 234444 46
Q ss_pred CHHHHHHHHhcCCHHH------HHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcC--ChHHHHHHHHHHHHhccc
Q 012677 257 AIPLLIDSVRTGTIET------RRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~------~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~ 327 (458)
+++.|++-+..=+..+ ..++.+.+-|+...+ +.+..+++.|.+.-|+.-+... -...+.+|...|.-+-.+
T Consensus 177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~ 256 (536)
T KOG2734|consen 177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN 256 (536)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc
Confidence 8898888776544333 444556677776555 4477777787666666533332 334567788888877665
Q ss_pred cc-chhHHHhhCcHHHHHHHhc-----cC------CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHH
Q 012677 328 LE-NKRRAVHAGAVRVILRKIM-----EN------SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNK 395 (458)
Q Consensus 328 ~~-~~~~i~~~g~v~~Lv~ll~-----~~------~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 395 (458)
.. ++.....-.++..|++-+. ++ ..-+.....|+.+...+.+|..++...++....-+++. . ...+
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-K-k~sr 334 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-K-KVSR 334 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-H-HHhh
Confidence 54 7777777899999998875 32 24455677777777799999999998888877777774 3 6778
Q ss_pred hHHHHHHHHHhccCc--hhHHHHHHhhhhhHHHHHHhhhCC---------HHHHHHHHHHHHHHHhhH
Q 012677 396 ENCAAILYNICFTDR--TRTREIMEEENANGTLSRLAENGT---------SRAKRKANGILERLNKAA 452 (458)
Q Consensus 396 ~~a~~~L~~L~~~~~--~~~~~~~~~~g~~~~L~~ll~~~~---------~~~~~~A~~~L~~l~~~~ 452 (458)
..++++|..+..+++ ..+.++++..|.-..+-..++.++ ...-++...+|+.+-++.
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 889999999998877 556677775543333333343222 235677777887776654
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0029 Score=67.55 Aligned_cols=254 Identities=14% Similarity=0.068 Sum_probs=161.9
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
+...|+.+. .+.+.++-....|.+++..+++.. + -++..|.+-+.+. ++.++..|+.+|.++-.
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l----LaINtl~KDl~d~----Np~IRaLALRtLs~Ir~----- 134 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L----LAVNTFLQDTTNS----SPVVRALAVRTMMCIRV----- 134 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H----HHHHHHHHHcCCC----CHHHHHHHHHHHHcCCc-----
Confidence 344555553 445566656666666665444332 1 1245556555553 88999999999877653
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
..+++. +++.+.+.|.+.++-+|+.|+-++..+-..+. ..+.+.|.++.|..+|.+.++.+..+|+.+|..+....
T Consensus 135 ~~i~e~--l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 135 SSVLEY--TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 223332 56667888889999999999999999865443 34455788999999999999999999999999997655
Q ss_pred cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
...- -...+.+..|+..+.+. ..+-..+.+|.... |...... ...+..+...|++. ++.+.-.|++++.++.
T Consensus 211 ~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 211 SEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLA 284 (746)
T ss_pred chhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Confidence 4322 23345667777777543 34556666664432 2211111 13456667777754 5899999999999988
Q ss_pred ccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 407 FTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 407 ~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.... .....+.. ....+++.| .++++.++--+..-|..+...
T Consensus 285 ~~~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 285 SRCSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred CcCCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 6532 22222221 123556665 345667777777666555543
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-06 Score=72.53 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=41.1
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|.|.||...++.||++.|||.||..|..+-++.+ ..|-+|++...-
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhcc
Confidence 48999999999999999999999999988877754 579999987643
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4e-06 Score=76.40 Aligned_cols=47 Identities=26% Similarity=0.313 Sum_probs=42.5
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.|+||+..+.-||.++|+|-||.-||.--...+..+||+||.+++.+
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 59999999999999999999999999887665667899999999875
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=65.31 Aligned_cols=147 Identities=14% Similarity=0.008 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
+.+..+|++.++.++..|+.+|..+- ...+++.|...+.+.++.++..|+.+|..+-. ..
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~ 209 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RL 209 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------Hh
Confidence 44555555555566666555555432 22344555555555566666666666543311 12
Q ss_pred cHHHHHHHhcc-CCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 339 AVRVILRKIME-NSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 339 ~v~~Lv~ll~~-~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
++..+..+... +..+...+.++..+...+ .+++.|..++++ +.++..++.+|..+..
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~lal~~~~---------~a~~~L~~ll~d---~~vr~~a~~AlG~lg~---------- 267 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLAVAGGP---------DAQAWLRELLQA---AATRREALRAVGLVGD---------- 267 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHhCCch---------hHHHHHHHHhcC---hhhHHHHHHHHHHcCC----------
Confidence 33344442222 222223222222222222 345666666663 3477777777765433
Q ss_pred HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 418 EEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 418 ~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
..+++.|+.++.+ +.+.+.|..++..|...
T Consensus 268 --p~av~~L~~~l~d--~~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 --VEAAPWCLEAMRE--PPWARLAGEAFSLITGM 297 (410)
T ss_pred --cchHHHHHHHhcC--cHHHHHHHHHHHHhhCC
Confidence 2245666666654 34888888888888764
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0003 Score=68.35 Aligned_cols=233 Identities=17% Similarity=0.113 Sum_probs=159.2
Q ss_pred hhhhhhHHhhc-CCc--HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-SSL--SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+..|++++. .+. .+|.++...|..... ..|+..++. .| ...++.+-+.. ..++.+...+.+|.++-+|
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~-~~-~~~Il~lAK~~---e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVAR-IG-LGVILNLAKER---EPVELARSVAGILEHMFKH 252 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhh-cc-chhhhhhhhhc---CcHHHHHHHHHHHHHHhhh
Confidence 46778888884 443 458888888877664 567888877 44 55555554442 3678888999999999998
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC--cchhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD--SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
++ ....++..| ++..++--.+..++++..+++-+|.|.+.+. +.+..|++..+-+-|..+-.+.+.-.+..|+-+.
T Consensus 253 Seet~~~Lvaa~-~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 253 SEETCQRLVAAG-GLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hHHHHHHHHhhc-ccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 76 456677775 7777776677778999999999999998764 5677888877777777777677778889999999
Q ss_pred HHhcccccchhHHHhhC---cHHHHHHHhc----------------------------cCCcHHHHHHHHHHhcC----C
Q 012677 322 FSLCILLENKRRAVHAG---AVRVILRKIM----------------------------ENSLVDELLAILAMLSS----H 366 (458)
Q Consensus 322 ~~L~~~~~~~~~i~~~g---~v~~Lv~ll~----------------------------~~~~~~~a~~~L~~La~----~ 366 (458)
..|+...+.-..+-..| .+++|+..+. +......++.+++-.+. .
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs 411 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS 411 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence 99988877555444443 3444444432 22223345555443322 3
Q ss_pred HHHHHHH-HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 367 QDAIEEI-GELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 367 ~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
..++..+ -+-|+|+.|-++..+ .++....-|-.+|..|...-
T Consensus 412 ~Q~K~kVFseIGAIQaLKevaSS-~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 412 LQGKTKVFSEIGAIQALKEVASS-PDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred hccchhHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHhcccc
Confidence 3444444 567899999888884 33555566777777765543
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1e-05 Score=72.79 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=42.0
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHh-cCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLD-EGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~-~~~~~CP~c~~~l~ 125 (458)
-...-+||+|++....|.+. +|||.||..||..-+. ...++||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567799999999999887 6999999999988765 33679999998765
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=64.43 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=153.4
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH
Q 012677 213 PLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI 292 (458)
Q Consensus 213 ~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 292 (458)
..|+.+|.+. ++.++..|+..|.+++.. ..+.........++.+.+++..... .+.|+.+|.|++....-++.
T Consensus 6 ~elv~ll~~~----sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSL----SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHhccC----ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence 3467777775 889999999999998876 4444444333466777788776655 77889999999999888888
Q ss_pred hhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh--h----CcHHHHHHHh-ccC-C---cHHHHHHHHH
Q 012677 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH--A----GAVRVILRKI-MEN-S---LVDELLAILA 361 (458)
Q Consensus 293 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~----g~v~~Lv~ll-~~~-~---~~~~a~~~L~ 361 (458)
+.+. .+..++.++.++....-..++.+|.||+..++....+.. . .++..++... ..+ . --...+.++.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8887 888888888887566777889999999998876555322 1 2333333333 333 1 1244778899
Q ss_pred HhcCCHHHHHHHHhcCCH--HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHH-hhhhhHHHH-----------
Q 012677 362 MLSSHQDAIEEIGELGAI--PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIME-EENANGTLS----------- 427 (458)
Q Consensus 362 ~La~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~~g~~~~L~----------- 427 (458)
||+..+.+|..+.+...+ ..|+.+-. .++.--+...+++|.|.|...... ..++. ....++.+.
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCH
Confidence 999999999999876632 22222222 232334557788999988876543 12222 111222211
Q ss_pred ----------HHhh-----hCCHHHHHHHHHHHHHHHhhHhhhh
Q 012677 428 ----------RLAE-----NGTSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 428 ----------~ll~-----~~~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
..+- ..++.++..-..+|-.||....+++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe 279 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGRE 279 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHH
Confidence 1111 2356678888888888887666654
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0015 Score=62.98 Aligned_cols=223 Identities=14% Similarity=0.115 Sum_probs=158.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
.+.....-++..|..+.+ -+++|..+.. ++++..|+..+.++ -.+-.+|-..+.++--|+.++.....+ ...+.+
T Consensus 169 ~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~-adg~~~l~~~l~s~--~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li 243 (442)
T KOG2759|consen 169 TNNDYIQFAARCLQTLLR-VDEYRYAFVI-ADGVSLLIRILAST--KCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLI 243 (442)
T ss_pred CCCchHHHHHHHHHHHhc-Ccchhheeee-cCcchhhHHHHhcc--CcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHH
Confidence 345666778889998887 4889999999 89999999988522 136688888999999999888877666 556799
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhccCc---ch----hHhhccCchHHHHHHhhcC---ChHHHHHHH-------HH
Q 012677 259 PLLIDSVRTG-TIETRRNAAAALFSLSALDS---NK----LIIGKLGAMTPLIDLLEEG---HPLAMKDVA-------SA 320 (458)
Q Consensus 259 ~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~---~~----~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~-------~a 320 (458)
+.|.++++.. ...+.+-.++++.|+....+ .+ ..++.. .++.-++.|... |+++....- ..
T Consensus 244 ~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s 322 (442)
T KOG2759|consen 244 QDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS 322 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999876 45677888899999976552 12 233334 466666666543 444332211 11
Q ss_pred HHHhcccc------------------------cchhHHHhh--CcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHH
Q 012677 321 IFSLCILL------------------------ENKRRAVHA--GAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAI 370 (458)
Q Consensus 321 L~~L~~~~------------------------~~~~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~ 370 (458)
...|++.+ +|...+-+. ..+..|+.+|... .+...|+.=+..... .|+++
T Consensus 323 vq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk 402 (442)
T KOG2759|consen 323 VQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK 402 (442)
T ss_pred HHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh
Confidence 22233321 233344443 5788899999744 345556666677776 89999
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
..+.+.||=..+.++|.+. +++++-+|+.|+..|-.+
T Consensus 403 ~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 403 AVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 9999999999999999965 599999999999887653
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0044 Score=61.00 Aligned_cols=268 Identities=14% Similarity=0.111 Sum_probs=177.8
Q ss_pred hhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCC
Q 012677 176 KMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENP 255 (458)
Q Consensus 176 ~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 255 (458)
.|+++.++|..+...++.+..+ +..-..+.+ .+.--.++.-|.... .+...+++|++.++.+.....+...+ ..
T Consensus 34 lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~-l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~~~-~~- 107 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYLISD-EESLQILLK-LHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPKEI-PR- 107 (371)
T ss_pred HCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHH-cCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcccC-CH-
Confidence 4466677888888888888775 555555655 455445555555431 24577889999988876554433333 22
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
|++..++.+..+.+...+..|..+|..|+..+ -+.+...||+..|++.+-++..+..+..+.++.++-.++..|.-+.
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 48889999999999999999999999998753 4566779999999999888877788899999999998888777544
Q ss_pred hhCcHHHHHHHhccC--------C---cHHHHHHHHHHhcCCHHHHHHHHhc--CCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 336 HAGAVRVILRKIMEN--------S---LVDELLAILAMLSSHQDAIEEIGEL--GAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--------~---~~~~a~~~L~~La~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
..--++.++.-+.+. . .-..+..++..+-.+-.|--.+... .++..|+..|..+ +++++...+.++
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll 264 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLL 264 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 432334444333322 1 1223444555554444444333332 3577777777754 366777777776
Q ss_pred HHHhccCc----------------hh-----------------------------------HHHHHHhhhhhHHHHHHhh
Q 012677 403 YNICFTDR----------------TR-----------------------------------TREIMEEENANGTLSRLAE 431 (458)
Q Consensus 403 ~~L~~~~~----------------~~-----------------------------------~~~~~~~~g~~~~L~~ll~ 431 (458)
..+-.-.. +. .-.+..+.|.++.|+.+..
T Consensus 265 ~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~ 344 (371)
T PF14664_consen 265 FDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIE 344 (371)
T ss_pred HHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHh
Confidence 66521100 00 0112335889999999988
Q ss_pred hC-CHHHHHHHHHHHHHHHhhH
Q 012677 432 NG-TSRAKRKANGILERLNKAA 452 (458)
Q Consensus 432 ~~-~~~~~~~A~~~L~~l~~~~ 452 (458)
.. ++....+|..+|..+-+.+
T Consensus 345 ~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 345 SSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred cCCCchHHHHHHHHHHHHHHHH
Confidence 76 7789999999988776543
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.1e-06 Score=74.27 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=42.0
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
-.|.|-||...+.+||++.|||+||..|-...+.. ...|++|.+.+..
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 35789999999999999999999999999888875 4579999987753
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.9e-05 Score=69.14 Aligned_cols=74 Identities=32% Similarity=0.451 Sum_probs=68.5
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
++|+.+.|.|..++|++||+.|.|-+|.+.-|.+++..-...-|++|.+++..++.||..++..|..|...|.+
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 47888899999999999999999999999999999986556799999999999999999999999999998865
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0046 Score=65.86 Aligned_cols=243 Identities=15% Similarity=0.120 Sum_probs=163.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
.++..+.-|+..+..++. +...-.-++. .|.+..|+.+|-+ -+..++.++..|-.|+.+.+.....++.|| +
T Consensus 1784 ~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~-~~vL~~LL~lLHS-----~PS~R~~vL~vLYAL~S~~~i~keA~~hg~-l 1855 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATA-NKECVTDLAT-CNVLTTLLTLLHS-----QPSMRARVLDVLYALSSNGQIGKEALEHGG-L 1855 (2235)
T ss_pred CCchHHHHHHHHHHHHhc-ccHHHHHHHh-hhHHHHHHHHHhc-----ChHHHHHHHHHHHHHhcCcHHHHHHHhcCc-h
Confidence 456788889998888877 4556666777 7889999999986 578889999999999999888777788764 4
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHhhccCc-------------------------------------------------
Q 012677 259 PLLIDSVR-TGTIETRRNAAAALFSLSALDS------------------------------------------------- 288 (458)
Q Consensus 259 ~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~------------------------------------------------- 288 (458)
.-+..++- +.....|..|+..|..|..+.-
T Consensus 1856 ~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~ 1935 (2235)
T KOG1789|consen 1856 MYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQ 1935 (2235)
T ss_pred hhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHH
Confidence 44555544 3456777777777777655320
Q ss_pred -----------------------------------------------chhHhhcc------------CchHHHHHHhhcC
Q 012677 289 -----------------------------------------------NKLIIGKL------------GAMTPLIDLLEEG 309 (458)
Q Consensus 289 -----------------------------------------------~~~~i~~~------------g~i~~Lv~lL~~~ 309 (458)
++..+... |.++.++.++...
T Consensus 1936 kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~ 2015 (2235)
T KOG1789|consen 1936 KVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRP 2015 (2235)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCC
Confidence 00000000 0111112222221
Q ss_pred Ch--HHHHHHHHHHHHhcccccchhH-HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHH
Q 012677 310 HP--LAMKDVASAIFSLCILLENKRR-AVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 310 ~~--~~~~~a~~aL~~L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ 384 (458)
++ .....-..++..|...+.+-.. +-..|.+|.++..+... .+-..|+++|..|+.+.-..+++....++..++.
T Consensus 2016 ~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~ 2095 (2235)
T KOG1789|consen 2016 TPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMK 2095 (2235)
T ss_pred CcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHH
Confidence 11 1112222333344444443333 44469999999988644 5678899999999999999999998888888999
Q ss_pred HHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 385 IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 385 ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
.|+.. ...-.-|+.+|-.+.....+...+-....|.++.|+.|+.
T Consensus 2096 ~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2096 SMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred HHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 99853 5666689999988888665544444445799999999985
|
|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.1e-06 Score=54.95 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.7
Q ss_pred cccccccccccCCccCCCcc-cccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 80 FRCPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh-~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
..|.||.+-..|-|.-.||| .+|..|-.+.++..+..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 46999999999999889999 58999988877767789999998864
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0047 Score=65.99 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=157.5
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHH-HHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELR-LLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~-~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
+..|-..|. .+...+.+|++.+- .++.+ ... ....+-++.++.+. +.+++....-.|.+.+...+.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv-------S~LF~dVvk~~~S~----d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV-------SYLFVDVVKLAPST----DLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc-------hHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcccChH
Confidence 344555553 45667788888665 44443 222 23445566666664 788888887778788765443
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+ ++..+.+=+.++|+-+|-.|.++|.++-.. .+.+. .++++.+.+.+.++-+|+.|+.++..+...
T Consensus 102 lalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~-l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 102 KALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEY-TLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 3222 345577888889999999999998877431 22222 466777888888999999999999999765
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
... .+.+.|.++.|.++|.+. .+...|+.+|..+......+- -...+.+..|+..+... ++-.|...+.+|..
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~- 245 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPEC-NEWGQLYILELLAA- 245 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh-
Confidence 442 334568889999999876 678999999999976321111 12233456666666543 36666666666643
Q ss_pred hccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 406 CFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
..+..-... ...+..+...+++.++.+.-.|++++-.+.
T Consensus 246 --y~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 246 --QRPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred --cCCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 222111111 234455555566666667666666666554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0026 Score=58.44 Aligned_cols=185 Identities=15% Similarity=0.042 Sum_probs=117.3
Q ss_pred hcCCHHHHHHHHHHHHHhhccC---cchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcH
Q 012677 266 RTGTIETRRNAAAALFSLSALD---SNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAV 340 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v 340 (458)
.+.+-+.|..|..-|..+.... +....+.+ ...+..++..+.+....+...|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4457888999999998887655 33344433 356677777777777789999999999998766655544455688
Q ss_pred HHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc---hhHHH
Q 012677 341 RVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR---TRTRE 415 (458)
Q Consensus 341 ~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~ 415 (458)
|.|++.+.++ -+++.|..+|..++.+-..-..++ ++.+...+. +.++.++..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 9999999887 467888888888887433111111 234444455 4569999999999998876554 21111
Q ss_pred HHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 416 IMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 416 ~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
-..-...++.+.+.+.++++.+|+.|..+++.+.++.+.+
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1101346778888889999999999999999999887764
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=54.60 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=67.1
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 258 IPLLIDSV-RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 258 i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
+|.|++.| ++++..+|..++.+|..+ ....+++.|+.+++++++.++..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57889988 778999999999998833 23356999999999999999999999999872 4
Q ss_pred hCcHHHHHHHhccC---CcHHHHHHHHH
Q 012677 337 AGAVRVILRKIMEN---SLVDELLAILA 361 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~---~~~~~a~~~L~ 361 (458)
..+++.|.+++.++ .++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 55899999999875 24666777663
|
|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.8e-05 Score=74.41 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=39.8
Q ss_pred CCCcccccccccccc------C-----------CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMT------D-----------PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~------~-----------p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....-.|+||+.... | =+.+||.|.|++.|+.+|.....-.||+||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 556677999997542 1 12459999999999999998545589999999863
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.024 Score=53.16 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=141.9
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChH--HHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIP--LLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.++.++..+. ++.++-..|.+.|..++.- +.-...+.+ ..... .+.++-... +.-.+...+..+..+..-
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFe-SellDdlhlrnlaakc----ndiaRvRVleLIieifSi 201 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFE-SELLDDLHLRNLAAKC----NDIARVRVLELIIEIFSI 201 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcc-cccCChHHHhHHHhhh----hhHHHHHHHHHHHHHHhc
Confidence 45666777664 5677778888999888874 444444444 22221 122221111 234444555555555444
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASA 320 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~a 320 (458)
++ ....... .|.+..|..=|+. .+.-++.++......|+..+..++.+.+.|.|..+..++... +|--+-.++..
T Consensus 202 Spesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmg 280 (524)
T KOG4413|consen 202 SPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMG 280 (524)
T ss_pred CHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence 33 3333334 4577766555544 466678888899999999999999999999999999988643 44443334433
Q ss_pred HHH----hcccccchhHHHhh--CcHHHHHHHhc--cCCcHHHHHHHHHHhcCCHHHHHHHHhcCC--HHHHHHHHhhcC
Q 012677 321 IFS----LCILLENKRRAVHA--GAVRVILRKIM--ENSLVDELLAILAMLSSHQDAIEEIGELGA--IPCLLRIIREST 390 (458)
Q Consensus 321 L~~----L~~~~~~~~~i~~~--g~v~~Lv~ll~--~~~~~~~a~~~L~~La~~~~~~~~i~~~g~--i~~Lv~ll~~~~ 390 (458)
... .+.-+-.-.+++++ -+|..-.+++. +++.++.|+.++..|-++.++++.+.+.|- ...++.-..+.+
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 222 22222122222222 22333333333 447899999999999999999999999883 444443333333
Q ss_pred ChhHHhHHHHHHHHHhccC
Q 012677 391 CERNKENCAAILYNICFTD 409 (458)
Q Consensus 391 ~~~~~~~a~~~L~~L~~~~ 409 (458)
-..-++.++.+|.+++..-
T Consensus 361 ahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred ccchHHHHHHHHHHhhccc
Confidence 3455788889999988643
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0019 Score=65.51 Aligned_cols=270 Identities=16% Similarity=0.093 Sum_probs=174.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhh---ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGE---STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
+.++.|.+.|. .+...+.-|..+|..++.++.+.-..-.. -.-.+|.++.+.+.. ++.++..|+..+-..-.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~----spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP----SPKIRSHAVGCVNQFII 203 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC----ChhHHHHHHhhhhheee
Confidence 46888888885 44566778899999988876554322110 013578889988875 88999999988765443
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
... ...+..-...++.+..+-...++++|++.|.+|..|-.....+-.=-=.++|+.++..-++.+..+...|+.-...
T Consensus 204 ~~~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 204 IQT-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred cCc-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 322 2222222236666766666779999999999999886544333222226788899988888899999999999999
Q ss_pred hcccccchhHHHh--hCcHHHHHHHhccC---------------------------------------------------
Q 012677 324 LCILLENKRRAVH--AGAVRVILRKIMEN--------------------------------------------------- 350 (458)
Q Consensus 324 L~~~~~~~~~i~~--~g~v~~Lv~ll~~~--------------------------------------------------- 350 (458)
++..+-.+..+.. ...+|.|++-|.-.
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 9988844444433 26777777644210
Q ss_pred -------CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCchhHHHHHHh-
Q 012677 351 -------SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE---STCERNKENCAAILYNICFTDRTRTREIMEE- 419 (458)
Q Consensus 351 -------~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~- 419 (458)
.+++-++++|--|+. +.....++.+.-+|+. ++.=.++|.++-+|..++.+--. -++..
T Consensus 363 dD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~L 432 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHL 432 (885)
T ss_pred ccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccch
Confidence 011222222222221 1222234444444432 23468899999999999876522 22211
Q ss_pred hhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 420 ENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 420 ~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
...++.|+.++.+..+-++.-.+|.|.+.+..-
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 235777888888888999999999998887653
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0047 Score=57.77 Aligned_cols=240 Identities=15% Similarity=0.110 Sum_probs=162.6
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-h---hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-N---KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL 286 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 286 (458)
.++.+...|+.+....+..++..+++.++.+..+.+ | -...+-+.++.+.++..+...+.++-..|...|..++..
T Consensus 79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 344444444444333477788888888777766554 2 223333456999999999999999999999999999999
Q ss_pred CcchhHhhccCchHHH--HHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC---CcHHHHHHHH
Q 012677 287 DSNKLIIGKLGAMTPL--IDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN---SLVDELLAIL 360 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L 360 (458)
++.-+.|.+......+ +.+-...+.-++......+..+.+... .....-..|.+..|..-|... -+...++...
T Consensus 159 paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 159 PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 9999999887666654 333334456677778888887766443 444455578888888888753 4678899999
Q ss_pred HHhcCCHHHHHHHHhcCCHHHHHHHHhhcC-ChhHHhHHHHHHHHHhc----cCchhHHHHHH-hhhhhHHHHHHhhhCC
Q 012677 361 AMLSSHQDAIEEIGELGAIPCLLRIIREST-CERNKENCAAILYNICF----TDRTRTREIME-EENANGTLSRLAENGT 434 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~L~~----~~~~~~~~~~~-~~g~~~~L~~ll~~~~ 434 (458)
..|+..+-+++.+...|.|+.+-.++...+ ++--+-.++.....+-. ..-.. .++.+ -.-+++-..+++...+
T Consensus 239 teLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvse-eaicealiiaidgsfEmiEmnD 317 (524)
T KOG4413|consen 239 TELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSE-EAICEALIIAIDGSFEMIEMND 317 (524)
T ss_pred HHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCH-HHHHHHHHHHHHhhHHhhhcCC
Confidence 999999999999999999999999997432 23333334433332221 11000 01111 1234555666777778
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012677 435 SRAKRKANGILERLNKA 451 (458)
Q Consensus 435 ~~~~~~A~~~L~~l~~~ 451 (458)
+.+.+.|..++..|...
T Consensus 318 pdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 318 PDAIEAAIDALGILGSN 334 (524)
T ss_pred chHHHHHHHHHHhccCC
Confidence 88899988888877643
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0088 Score=60.62 Aligned_cols=263 Identities=14% Similarity=0.174 Sum_probs=166.0
Q ss_pred HHHHHHHHhhCchhhhhhhhccCChHHHhhcc--C----CCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHHH
Q 012677 188 AKELRLLTKRMPLFRALFGESTDAIPLLLSPL--S----PGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIPL 260 (458)
Q Consensus 188 ~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL--~----~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~ 260 (458)
+..|+.++++ +.....+.. ..++..|..+- . ......+..+...|+++|.|+-.+.+ .|..+++. |..+.
T Consensus 2 L~~LRiLsRd-~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEK 78 (446)
T ss_pred HHHHHHHccC-cccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHH
Confidence 4455556653 444445544 45566665554 0 01122478999999999999987766 45566665 58888
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHhhcc-CcchhHhhc-cCchHHHHHHhhc-----------------CChHHHHH
Q 012677 261 LIDSVRTG-----TIETRRNAAAALFSLSAL-DSNKLIIGK-LGAMTPLIDLLEE-----------------GHPLAMKD 316 (458)
Q Consensus 261 Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~ 316 (458)
++..|+.. +.++.-...++|+-++.. .+.+..+++ .+++..|+..|.. .+......
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 99999886 788888888988877653 355666665 6888888876632 02345678
Q ss_pred HHHHHHHhcccccchhHHHhhCcHHHHHHHhc-------cC----CcHHHHHHHHHHhcCC-HHH-------HHHH----
Q 012677 317 VASAIFSLCILLENKRRAVHAGAVRVILRKIM-------EN----SLVDELLAILAMLSSH-QDA-------IEEI---- 373 (458)
Q Consensus 317 a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~-------~~----~~~~~a~~~L~~La~~-~~~-------~~~i---- 373 (458)
++.+++|+..+......--..+.++.|+.++. .+ .....++.+|.++-.. ... ...+
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 89999999876654433223345555555543 11 3567788888877331 111 1111
Q ss_pred HhcCCHHHHHHHHhhc----C---ChhHHhHHHHHHHHHhccCchhHHHHHHh----------------hhhhHHHHHHh
Q 012677 374 GELGAIPCLLRIIRES----T---CERNKENCAAILYNICFTDRTRTREIMEE----------------ENANGTLSRLA 430 (458)
Q Consensus 374 ~~~g~i~~Lv~ll~~~----~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~----------------~g~~~~L~~ll 430 (458)
.....+..|+.+|... . -+..-.--+.+|..++..+. ..++.++. ...-..|++|+
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm 317 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM 317 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence 1112477777777531 1 12344556677777777654 23454442 23445688888
Q ss_pred hhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 431 ENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 431 ~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.+..+.++..++..|+.||+.+..
T Consensus 318 t~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 318 TSPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred CCCCchHHHHHHHHHHHHHhhhHH
Confidence 887799999999999999976543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=53.80 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=67.7
Q ss_pred hHHHHHHh-hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 299 MTPLIDLL-EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 299 i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
|+.|++.| +++++.++..++.+|.++- +..+++.|++++.++ .++..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 68899988 7779999999999999541 235799999999877 57888999988772 3
Q ss_pred cCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 376 LGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 376 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
..+++.|.+++.++.+..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4479999999997665677899988874
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=46.43 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=36.2
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
++++..+.+.|+|++|+.+|.+++++++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478888999999999999998899999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.7e-05 Score=73.23 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=38.5
Q ss_pred CCCccccccccccccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
+.+--+||+|++-|-+-+ .+.|.|+|+-.|+..|+.. +||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 344558999999997655 3479999999999999963 7999997765
|
|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=2.8e-05 Score=69.60 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=41.2
Q ss_pred CccccccccccccCCc----------cCCCcccccHHHHHHHHhcC-CCCCCCCCccCCCCCCccc
Q 012677 78 YEFRCPISGEIMTDPV----------VLANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~----------~l~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~~~~~n 132 (458)
++..|.+|.+-+.+-+ .+.|+|.|+..||.-|.--| .++||.|+..+....+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 4556999997664433 57999999999999998655 4599999988765443333
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.011 Score=59.96 Aligned_cols=233 Identities=15% Similarity=0.158 Sum_probs=157.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC-CChhHHHHHHHHHHhccc-CchhhhhhhcCCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-TDPGLLEDLITTILNLSI-HDENKRLVAENPL 256 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~ 256 (458)
.+.....+|+++|.|..-.++..|..+.+ .|..+.++..|+..... .+.++.--...+|+-++. ..+.+..+++..+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34677889999999999999999999999 89999999999875221 255777777888876664 4557777777666
Q ss_pred CHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc---------CC
Q 012677 257 AIPLLIDSVRT-----------------GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE---------GH 310 (458)
Q Consensus 257 ~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------~~ 310 (458)
++..|+..|.. .+......+..+++|+..+......-...+.++.|+.++.. +.
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 78877776531 12345667788899997755433321225566777666532 13
Q ss_pred hHHHHHHHHHHHHhccccc-c-------hh----HHHhhCcHHHHHHHhccC-------C---cHHHHHHHHHHhcCC-H
Q 012677 311 PLAMKDVASAIFSLCILLE-N-------KR----RAVHAGAVRVILRKIMEN-------S---LVDELLAILAMLSSH-Q 367 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~~-~-------~~----~i~~~g~v~~Lv~ll~~~-------~---~~~~a~~~L~~La~~-~ 367 (458)
......+..+|.|+-.... . .. .......+..|+++|... . ...-.+.+|.+++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 3566778888888732111 0 11 112335677788877532 2 234467777777774 5
Q ss_pred HHHHHHHhc----------------CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 368 DAIEEIGEL----------------GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 368 ~~~~~i~~~----------------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
..|+.+... ..-..|++++.+.. ..++..+...|+.||..+.++.
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~d~~~~ 343 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKEDASRF 343 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhhhHHHH
Confidence 556555331 24677889998765 9999999999999999876543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00042 Score=44.56 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
++++..+++.|+++.|+++|..+ +++++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 45888999999999999999954 59999999999999974
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0051 Score=65.50 Aligned_cols=138 Identities=19% Similarity=0.203 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhccCc-chhHhhc----cCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHH
Q 012677 271 ETRRNAAAALFSLSALDS-NKLIIGK----LGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVIL 344 (458)
Q Consensus 271 ~~~~~a~~~L~~Ls~~~~-~~~~i~~----~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv 344 (458)
+-...+..+|.|+..... -....+. -|-++.+...++. +++++++-|+.++..+....+....+++.|++..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 345778889999876543 3433332 5778888888876 488999999999999999999888899999999999
Q ss_pred HHhccC-CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 345 RKIMEN-SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 345 ~ll~~~-~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.+|.+- +.++.++.+|+.|+++++-..+..+.|++.-+..++-.+.++..+..|+..|..|...
T Consensus 1820 ~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1820 TLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 999876 7899999999999999999889999999999999888777788999999999998764
|
|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00019 Score=48.20 Aligned_cols=41 Identities=29% Similarity=0.690 Sum_probs=32.3
Q ss_pred ccccccc--cccCCccCCCc-----ccccHHHHHHHHhcC-CCCCCCCC
Q 012677 81 RCPISGE--IMTDPVVLANG-----QTFDRPCIQRWLDEG-NRTCPQTR 121 (458)
Q Consensus 81 ~C~ic~~--~~~~p~~l~cg-----h~fc~~ci~~~~~~~-~~~CP~c~ 121 (458)
.|-||++ .-.+|.+.||. |.+++.|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 44567778874 789999999999753 45899985
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00023 Score=66.29 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.++..||||..-..+.|..||||.-|+.||.+++- +.+.|-+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceeee
Confidence 35678999999888999999999999999999997 36689999876643
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00016 Score=66.86 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=46.2
Q ss_pred CCcCCCCCCccccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
++.....++.-.||+|..--.+|.++. .|..||..||..+.. .+.+||+++.+..
T Consensus 291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 444455677888999999999998875 799999999999999 4778999988764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.024 Score=57.52 Aligned_cols=267 Identities=15% Similarity=0.091 Sum_probs=160.7
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..++..++ .+...|+.....|..+........ . .-..+.+.++++.. +...+..|...+..+..+.-
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~-~~~l~~l~~ll~~~----~~~~~~~aa~~~ag~v~g~~- 166 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----G-EYVLELLLELLTST----KIAERAGAAYGLAGLVNGLG- 166 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----H-HHHHHHHHHHhccc----cHHHHhhhhHHHHHHHcCcH-
Confidence 4666777775 345666666666655443221111 0 12346666777754 66777788888877775532
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc---CChHHHHHHHHHHHHh
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE---GHPLAMKDVASAIFSL 324 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~aL~~L 324 (458)
...+.+. +++..|-..+.......+..+. +.+......+-....+.+.++.+..+|.+ ....+|..|..+...+
T Consensus 167 i~~~~~~-~~l~~l~~ai~dk~~~~~re~~--~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 167 IESLKEF-GFLDNLSKAIIDKKSALNREAA--LLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAI 243 (569)
T ss_pred Hhhhhhh-hHHHHHHHHhcccchhhcHHHH--HHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHH
Confidence 2333333 4777777777766544444321 11111111222244556666666666643 4677888877777665
Q ss_pred ccccc-chhHHHhhCcHHHHHHHhccCC--cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLE-NKRRAVHAGAVRVILRKIMENS--LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~-~~~~i~~~g~v~~Lv~ll~~~~--~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
-..-. ...+ -.++.++.-+.+.. ....++..|..|+.+..-+-...-...||.|.+.|.+.. +++++.+..+
T Consensus 244 ~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~a~~~~ 318 (569)
T KOG1242|consen 244 MRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRKAGIET 318 (569)
T ss_pred HHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHHHHHHH
Confidence 33221 1111 13344444443333 455688999999887777777777888999999999877 9999999999
Q ss_pred HHHHhccCchh-HHHHH----H-------------------------hhhhhHHHHHHhhhC----CHHHHHHHHHHHHH
Q 012677 402 LYNICFTDRTR-TREIM----E-------------------------EENANGTLSRLAENG----TSRAKRKANGILER 447 (458)
Q Consensus 402 L~~L~~~~~~~-~~~~~----~-------------------------~~g~~~~L~~ll~~~----~~~~~~~A~~~L~~ 447 (458)
|..++..-.+. ...++ . ++-.+..++-+++++ +..++++++.+++|
T Consensus 319 l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 319 LLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHH
Confidence 99988754421 11111 1 122344455566554 55789999999999
Q ss_pred HHhhHh
Q 012677 448 LNKAAL 453 (458)
Q Consensus 448 l~~~~~ 453 (458)
+|+..+
T Consensus 399 m~~Lve 404 (569)
T KOG1242|consen 399 MCKLVE 404 (569)
T ss_pred HHHhhc
Confidence 999873
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.021 Score=57.23 Aligned_cols=263 Identities=11% Similarity=0.093 Sum_probs=166.1
Q ss_pred CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHH
Q 012677 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIP 259 (458)
Q Consensus 180 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~ 259 (458)
++..|.--+.=|..+-.- | ..+.+.-.....+.|..+|++. +.+++..+-.+|.++-..=.+....++.+..++
T Consensus 180 n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~LsD~----s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~ 253 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNMLSDS----SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMIN 253 (675)
T ss_pred CchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHHhcCccccCcccchh
Confidence 455555444444444332 2 1222222134567777888764 667776555555544332223334435556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChH-HHHHHHH---HHHHhcccccchhHHH
Q 012677 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPL-AMKDVAS---AIFSLCILLENKRRAV 335 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~---aL~~L~~~~~~~~~i~ 335 (458)
.++.-+.++++.++.-|..-+..+...........-.|++..++.++.+..+. .+..+.. .|..+......... +
T Consensus 254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-i 332 (675)
T KOG0212|consen 254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-I 332 (675)
T ss_pred hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-c
Confidence 89999999999999999888888876554444444478888888888776543 3333222 34444444443433 4
Q ss_pred h-hCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 336 H-AGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 336 ~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+ ...+..|.+.+++. +.+-.++.-+..|-..-.++-..-.....+.|++-|.+. ++.+...++..|+++|......
T Consensus 333 d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 333 DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSNSP 411 (675)
T ss_pred chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcccc
Confidence 4 34778888888876 456667766666655444444444556778888888865 5999999999999999866431
Q ss_pred HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 413 TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 413 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
.. -.++..|.++......-...++.-+++.||-.-+..
T Consensus 412 --~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE 449 (675)
T KOG0212|consen 412 --NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE 449 (675)
T ss_pred --cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence 11 124445555555666668899999999999765543
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=5.3e-05 Score=55.25 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=23.2
Q ss_pred cccccccccccc-C---CccC----CCcccccHHHHHHHHhc--CC--------CCCCCCCccCC
Q 012677 79 EFRCPISGEIMT-D---PVVL----ANGQTFDRPCIQRWLDE--GN--------RTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~-~---p~~l----~cgh~fc~~ci~~~~~~--~~--------~~CP~c~~~l~ 125 (458)
+..|+||..... + |... .|++.||..|+.+||.. .. ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 456999998764 2 4443 59999999999999973 11 26999998875
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=50.99 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHh-hcCChhHHhHHHHHHHHHhccCchhHHHHHH
Q 012677 352 LVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIR-ESTCERNKENCAAILYNICFTDRTRTREIME 418 (458)
Q Consensus 352 ~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 418 (458)
++...+.+|.+|+. ++.++..+.+.|+++.++.... +.+++-+++.|+.++.+|+.+++.++ +++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ-~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ-EFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH-HHHH
Confidence 46678999999998 8999999999999999998775 45679999999999999999998764 4444
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0049 Score=61.21 Aligned_cols=258 Identities=14% Similarity=0.093 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DENKRLVAENPLAIPLLID 263 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~ 263 (458)
..++..|..+++.-.-.|.-+.+ ..+++.|+++|+.+ +..+.--+...+.|+... ++-+..+...+ ++..|+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d-~~I~elLi~~Ls~P----eimi~~~~t~~icn~vv~fsnL~~~fL~~~-iIdvl~~ 480 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLD-YPIVELLIDALSNP----EIMIEFPDTIDICNKVVPFSNLGAGFLEKS-IIDVLVN 480 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccc-cchHHHHHHHhcCc----cceeeccchhhhhheeeeccchHHHHHHhh-HHHHHHH
Confidence 34556677777766667777788 88999999999874 455555677777777644 45567777774 9999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCcch--hHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-c---hhHHHhh
Q 012677 264 SVRTGTIETRRNAAAALFSLSALDSNK--LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-N---KRRAVHA 337 (458)
Q Consensus 264 lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~---~~~i~~~ 337 (458)
++.+.+..+|.+..|.|+.+..++++- -.....-++..++.+.++++-.+++..+..|.|+..+.. | +...+..
T Consensus 481 ~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 481 LVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred HhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999998877653 334445568999999999999999999999999976332 2 2212221
Q ss_pred ---C-cHHHHHHHhccC--CcHHHHHHHHHHhcCCHHH-HHHHHhcC-CHHHHHHHHh----h-----------------
Q 012677 338 ---G-AVRVILRKIMEN--SLVDELLAILAMLSSHQDA-IEEIGELG-AIPCLLRIIR----E----------------- 388 (458)
Q Consensus 338 ---g-~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~-~~~i~~~g-~i~~Lv~ll~----~----------------- 388 (458)
. ....|++.++.. ......+-+|.+++..++. +..+.+.. .+..+-++|. +
T Consensus 561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s 640 (743)
T COG5369 561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPIS 640 (743)
T ss_pred ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccc
Confidence 1 334444444433 2234446666666664444 33333322 2222222221 0
Q ss_pred -------------------------------cCChhHHhHHHHHHHHHhccCc---------hhHHHHHHhhhhhHHHHH
Q 012677 389 -------------------------------STCERNKENCAAILYNICFTDR---------TRTREIMEEENANGTLSR 428 (458)
Q Consensus 389 -------------------------------~~~~~~~~~a~~~L~~L~~~~~---------~~~~~~~~~~g~~~~L~~ 428 (458)
.++.+...+..|.+.|+..... +++ .++.+.|.-+.|++
T Consensus 641 ~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~-~iL~~~G~~e~l~k 719 (743)
T COG5369 641 YTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERI-QILCANGIREWLVK 719 (743)
T ss_pred eeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHH-HHHHHccHHHHHHH
Confidence 0112344455666666432111 233 34556888889999
Q ss_pred HhhhCCHHHHHHHHHHHHHHH
Q 012677 429 LAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 429 ll~~~~~~~~~~A~~~L~~l~ 449 (458)
+..+.++.+++++..+|.++.
T Consensus 720 ~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 720 IQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HhccCcHHHHHHHHHHHHhhh
Confidence 888899999999999998875
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.024 Score=56.60 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=56.8
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
+..|+..|.+. +..++..++.+|..+- . .+..+.|+.+|++.++.++..++.++..
T Consensus 88 ~~~L~~~L~d~----~~~vr~aaa~ALg~i~----------~-~~a~~~L~~~L~~~~p~vR~aal~al~~--------- 143 (410)
T TIGR02270 88 LRSVLAVLQAG----PEGLCAGIQAALGWLG----------G-RQAEPWLEPLLAASEPPGRAIGLAALGA--------- 143 (410)
T ss_pred HHHHHHHhcCC----CHHHHHHHHHHHhcCC----------c-hHHHHHHHHHhcCCChHHHHHHHHHHHh---------
Confidence 45555555542 4445555555553211 1 1244555556655555555555544443
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
......+.|..+|++.++.++..|+.+|..+- ....++.|...+.+. .++..|+..|..+
T Consensus 144 --r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 --HRHDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --hccChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 11123445555665556666666666665542 223444455555444 3455555555433
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0061 Score=62.03 Aligned_cols=231 Identities=14% Similarity=0.114 Sum_probs=153.5
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh------hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR------LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSL 283 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~------~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~L 283 (458)
..+|.|.++|.+. +-..++.|..+|..++.+....- .-.. -.+|.++++.+++++.+|..|++.+-.+
T Consensus 128 elLp~L~~~L~s~----d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~--~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 128 ELLPQLCELLDSP----DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN--IMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred hHHHHHHHHhcCC----cccccchhHHHHHHHHhhhHHHHhhhcccCchH--HhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 4578899999875 66788899999988886654211 1122 3688999999999999999999887665
Q ss_pred hccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHH
Q 012677 284 SALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAIL 360 (458)
Q Consensus 284 s~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L 360 (458)
.... +...+.. ...++.|..+-.+.++++|++.+.+|..|-.....+..--=.++++.+++.-.+. ++.-.|+...
T Consensus 202 i~~~-~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQ-TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecC-cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 4433 2222333 4566777777777899999999999999976655444322247777777777765 6788899999
Q ss_pred HHhcCCHHHHHHHHhc--CCHHHHHHHH----------hhcCC-------------------------------------
Q 012677 361 AMLSSHQDAIEEIGEL--GAIPCLLRII----------RESTC------------------------------------- 391 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~--g~i~~Lv~ll----------~~~~~------------------------------------- 391 (458)
..+|..+..+..+... ..||.|+.-| .+...
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9999988666666443 4577776432 20000
Q ss_pred --------hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 392 --------ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 392 --------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
=.++.-++++|..|+...+. +++ .-..|.|-+.+.+..=.+|+.+..+|..+++-+
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~---elL--~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc 424 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGD---ELL--PILLPLLKEHLSSEEWKVREAGVLALGAIAEGC 424 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHH---HHH--HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH
Confidence 02445556666666654433 222 234555555555555568888888888777644
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.018 Score=48.90 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=93.7
Q ss_pred hHhhccCchHHHHHHhhcCCh------HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----CcHHHHHHHH
Q 012677 291 LIIGKLGAMTPLIDLLEEGHP------LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----SLVDELLAIL 360 (458)
Q Consensus 291 ~~i~~~g~i~~Lv~lL~~~~~------~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L 360 (458)
....+.||+..|++++.++.. +....++.++..|-.+.-.-=..++...|..++.++... .+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345667889999999998763 677888999999888765222456667788888888744 5788999999
Q ss_pred HHhcCCHHHHHHH-HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 361 AMLSSHQDAIEEI-GELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 361 ~~La~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
.++..++...... .++=-++.|+.+|+.+ ++.++.+|+..+-.|-...++.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChH
Confidence 9999966654444 4444699999999975 5999999999999988766544
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.02 Score=55.86 Aligned_cols=188 Identities=22% Similarity=0.231 Sum_probs=110.6
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
..+..++..+.+. +..++..|...+..+. .. ..++.+..++...+..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~----~~~vr~~aa~~l~~~~----------~~-~av~~l~~~l~d~~~~vr~~a~~aLg~~------ 101 (335)
T COG1413 43 EAADELLKLLEDE----DLLVRLSAAVALGELG----------SE-EAVPLLRELLSDEDPRVRDAAADALGEL------ 101 (335)
T ss_pred hhHHHHHHHHcCC----CHHHHHHHHHHHhhhc----------hH-HHHHHHHHHhcCCCHHHHHHHHHHHHcc------
Confidence 3567777777763 6677777776643332 12 3678888888888888888888755543
Q ss_pred hhHhhccCchHHHHHHhh-cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHH
Q 012677 290 KLIIGKLGAMTPLIDLLE-EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQD 368 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~ 368 (458)
....+++.|+.++. +++..++..++.+|..+- +..++.+|+..+.+..... +...+ ......
T Consensus 102 ----~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~-a~~~~--~~~~~~ 164 (335)
T COG1413 102 ----GDPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS-AAAAL--DAALLD 164 (335)
T ss_pred ----CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh-hhhhc--cchHHH
Confidence 33457888888888 478888888888888762 2234677777776653111 11111 000001
Q ss_pred HHHHH-------HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 369 AIEEI-------GELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 369 ~~~~i-------~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
.|..+ .+.-.++.+..++.+.. ..++..|..+|..+.... ....+.+...+.+.+..++..+
T Consensus 165 ~r~~a~~~l~~~~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 165 VRAAAAEALGELGDPEAIPLLIELLEDED-ADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHHHHHHHHcCChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHH
Confidence 11111 12235777777777543 678888888887776654 1223444444444444455444
Q ss_pred HHHHH
Q 012677 442 NGILE 446 (458)
Q Consensus 442 ~~~L~ 446 (458)
+..|.
T Consensus 234 ~~~l~ 238 (335)
T COG1413 234 LLALG 238 (335)
T ss_pred HHHhc
Confidence 44443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0037 Score=57.44 Aligned_cols=177 Identities=17% Similarity=0.125 Sum_probs=109.6
Q ss_pred CCcHHHHHHHHHHHHHHhhC--chhhhhhhh-ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh-hhhcC
Q 012677 179 SSLSDQKEAAKELRLLTKRM--PLFRALFGE-STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR-LVAEN 254 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~-~i~~~ 254 (458)
.+.+.|.+|+..|..+...+ ......+.+ ....+..+...+.+. ...+...|+.++..++..-...- .+++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 56788999999999999876 222222222 013445566666643 45788889999888886644332 2333
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhH
Q 012677 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRR 333 (458)
Q Consensus 255 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~ 333 (458)
.++|.|+..+.+++.-++..|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+..... ....
T Consensus 94 -~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 94 -ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp -HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred -HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 38899999999999999999999999998754311111 15566667788899999999999988865444 1222
Q ss_pred HHh----hCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 334 AVH----AGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 334 i~~----~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
+-. ...++.+...+.|+ ++++.|-.++..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 211 34778888888887 688888888888855
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0041 Score=61.79 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=137.2
Q ss_pred HHHHHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCCh
Q 012677 234 LITTILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHP 311 (458)
Q Consensus 234 a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~ 311 (458)
++..|..++..-. -|.-+.+.. +++.|+++|+.++..+.--+...+.|+...-.| +..+.+.|.|..|+.++.+.+.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~-I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYP-IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccc-hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444445554432 466666765 899999999998777777777888888754445 7778889999999999998888
Q ss_pred HHHHHHHHHHHHhcccccc--hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC----HHHHHHHHhcC----CH
Q 012677 312 LAMKDVASAIFSLCILLEN--KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH----QDAIEEIGELG----AI 379 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~----~~~~~~i~~~g----~i 379 (458)
..+.+..|+|+++..+.++ +-+.+..-++..++.+..++ .++..++.+|.|+..+ +..+..+.+.- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999876653 44577788999999999998 7899999999999662 33344333332 23
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll 430 (458)
..|++.+..-. +-..+..+-+|.+++..+++.-.-+.++...+..+.+.+
T Consensus 568 k~l~~k~e~~n-p~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 568 KRLIDKYEENN-PMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHhcC-chhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 44556666433 555555677888888877654323444444555544443
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0003 Score=50.78 Aligned_cols=44 Identities=41% Similarity=0.739 Sum_probs=31.9
Q ss_pred ccccccccccC----CccC-CCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 81 RCPISGEIMTD----PVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~----p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
.||-|+.-|.. |+.- .|.|.|+..||.+|+.. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 45556554421 3333 59999999999999996 457999998764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00022 Score=67.80 Aligned_cols=61 Identities=25% Similarity=0.487 Sum_probs=48.3
Q ss_pred ccccccccccccCCc-----cCCCcccccHHHHHHHHhcC-CCCCCCCCccCCCCCCcccHHHHHHH
Q 012677 79 EFRCPISGEIMTDPV-----VLANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHTVLIPNHLVREMI 139 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~-----~l~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~~~~~n~~l~~~i 139 (458)
..+||||++-+.-|+ .+.|||.|-..||++|+-+. ...||.|...-.+..+++-+.+|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 357999999888774 45799999999999999532 24899999888888888877765543
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=49.34 Aligned_cols=240 Identities=14% Similarity=0.162 Sum_probs=165.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCc---------hhhhhhhhccCChHHHhhccCCCCC--CCChhHHHHHH
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMP---------LFRALFGESTDAIPLLLSPLSPGRA--DTDPGLLEDLI 235 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~~~a~ 235 (458)
.+++.|+..|. .+.++....+..+..|+..+- ..-..+++ .+.++.|+.-+..-.. .+.......++
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 47888888887 456666677777888875321 23445666 6778888877754311 11334556777
Q ss_pred HHHHhcccCch-hhhhhhcCCCCHHHHHHHHh-cC-CHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhh---c
Q 012677 236 TTILNLSIHDE-NKRLVAENPLAIPLLIDSVR-TG-TIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLE---E 308 (458)
Q Consensus 236 ~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~-~~-~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~---~ 308 (458)
..+-|+..-.+ ....+++. |.+..|+.-+. .+ -..-+..|..+|.-+-.+. +++..++...+|..|++-+. .
T Consensus 204 ~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 88888876554 55666666 57776665333 22 3445677777777776655 48888999888999988663 1
Q ss_pred C------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcCCH---HHHHHHHhcCC
Q 012677 309 G------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSSHQ---DAIEEIGELGA 378 (458)
Q Consensus 309 ~------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~~~---~~~~~i~~~g~ 378 (458)
. ..+..++.-.+|+.+....+|+..++...+++...=+++.. ..+..++.+|-.....+ ++...+++.+|
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 1 23456777888888888999999999998888877777765 45777999998887744 57888899888
Q ss_pred HHHHHHHHhh---------cCChhHHhHHHHHHHHHhccC
Q 012677 379 IPCLLRIIRE---------STCERNKENCAAILYNICFTD 409 (458)
Q Consensus 379 i~~Lv~ll~~---------~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+..+..+... ......-++.+.+|+.+-...
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 8777655541 122566778888888776533
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.14 Score=53.08 Aligned_cols=215 Identities=15% Similarity=0.155 Sum_probs=121.3
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+++|++.|. +|+.++-.|+..|..|++.+|.+--. ..|.+..+|..+ ++.=+..+.+....+|+--++
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~------LAP~ffkllttS---sNNWmLIKiiKLF~aLtplEP- 251 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ------LAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLEP- 251 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc------ccHHHHHHHhcc---CCCeehHHHHHHHhhccccCc-
Confidence 4666666664 55667777777777777777665422 234455555443 244455556666666664443
Q ss_pred hhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHH--HhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 248 KRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALF--SLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~--~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
.+.+. .+|.|..++.+.. ..+.-.++.++- +++....+...-+.. ++..|-.++.+.|+..+.-++.+++.+
T Consensus 252 --RLgKK--Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 252 --RLGKK--LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred --hhhhh--hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 22232 5566777666542 223333333321 233222222222221 567777788888999999999999998
Q ss_pred ccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
...+. ..++ --+.+++.|.+. .++-+|+..|+.+..-. |-.+| +..|+..+...+....+..-+.-
T Consensus 327 ~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eI-----Vk~LM~~~~~ae~t~yrdell~~ 395 (877)
T KOG1059|consen 327 LKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEI-----VKTLMKHVEKAEGTNYRDELLTR 395 (877)
T ss_pred hhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHH-----HHHHHHHHHhccchhHHHHHHHH
Confidence 76543 2111 224466778766 78999999999886533 33333 34455555443323445555555
Q ss_pred HHHHhccC
Q 012677 402 LYNICFTD 409 (458)
Q Consensus 402 L~~L~~~~ 409 (458)
+..+|+.+
T Consensus 396 II~iCS~s 403 (877)
T KOG1059|consen 396 IISICSQS 403 (877)
T ss_pred HHHHhhhh
Confidence 55566655
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0002 Score=67.66 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=40.6
Q ss_pred ccccccccccCCccCCCcccccHHHHHHHHhc-CCCCCCCCCccCCCC
Q 012677 81 RCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-GNRTCPQTRQVLSHT 127 (458)
Q Consensus 81 ~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~~l~~~ 127 (458)
.|-||-+-=+|-.+-||||..|..|+..|..+ +..+||+||..+.-.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999999898777799999999999999854 367999999988654
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.024 Score=56.86 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=159.5
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
+.||.|-+-+.. .++..+.-.+.-|..|-.-++ ...+---....+.|..+|..++.++|..+-.+|.++-..-.+
T Consensus 167 ~~ipLL~eriy~----~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 167 EFIPLLRERIYV----INPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred HHHHHHHHHHhc----CCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 444544444443 366666666666555543332 333332334677789999999999998888877776443333
Q ss_pred hhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCC---cHHHHH---HHHHH
Q 012677 290 KLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS---LVDELL---AILAM 362 (458)
Q Consensus 290 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~---~~~~a~---~~L~~ 362 (458)
...-.+ ...++.++.-+.++++.++..|+.-|.....-........-.|++..++..+.+.+ .++-+. ..|..
T Consensus 242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 333334 56788899988999999999998888888776665555556788888888887652 222221 23445
Q ss_pred hcCCHHHHHHHHhcC-CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 363 LSSHQDAIEEIGELG-AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 363 La~~~~~~~~i~~~g-~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
+++.+..++. ++.| .+..|.+.+.++ ....+-.++.-+..|-...++. -++-....-+.|.+-+.+.++.+..++
T Consensus 322 l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 322 LVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCchhHHHHHH
Confidence 5556655555 5555 477788888865 4999999999999988877764 333334556667777777888999999
Q ss_pred HHHHHHHHhhHhh
Q 012677 442 NGILERLNKAALI 454 (458)
Q Consensus 442 ~~~L~~l~~~~~~ 454 (458)
..++..+|.-.+.
T Consensus 398 L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 398 LSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHhcCccc
Confidence 9999999865544
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0034 Score=63.78 Aligned_cols=218 Identities=14% Similarity=0.117 Sum_probs=132.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD- 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~- 245 (458)
.+.+.|+.... .|..+|..|++.|..|.....-. .-.....++++++. +..++..|+..+.-+..-.
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-------~~~Y~~A~~~lsD~----~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-------KACYSRAVKHLSDD----YEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccccccc-------HHHHHHHHHHhcch----HHHHHHHHHHHHHHHHhcCC
Confidence 45555666654 56778888988887776532111 23456677777763 7788888876655433211
Q ss_pred ------hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHH
Q 012677 246 ------ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVAS 319 (458)
Q Consensus 246 ------~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 319 (458)
.+...+.+. +...+-..+...+..+|..|+.+|..+-...+ .+...-.=+.++.-++. .........
T Consensus 267 ~~~e~e~~e~kl~D~--aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR--kr~ahkrpk 339 (823)
T KOG2259|consen 267 APLERESEEEKLKDA--AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR--KRTAHKRPK 339 (823)
T ss_pred CcccchhhhhhhHHH--HHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh--hhhcccchH
Confidence 133444443 56667888888888999999999887744221 11111111122221111 011111111
Q ss_pred HHH-Hh--c------------ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHH
Q 012677 320 AIF-SL--C------------ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPC 381 (458)
Q Consensus 320 aL~-~L--~------------~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~ 381 (458)
.++ +. + ..++.-..++..|+=..+|.-|.+. +++..|+..++.|+. .|.-... ++.-
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldf 414 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDF 414 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHH
Confidence 121 11 0 0122334477888888899888888 899999999999987 4443333 3677
Q ss_pred HHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 382 LLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 382 Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
|+.++.+.. +.++..|+.+|..|+.+-
T Consensus 415 LvDMfNDE~-~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 415 LVDMFNDEI-EVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHhccHH-HHHHHHHHHHHHHHHHHh
Confidence 899998654 899999999999998763
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00043 Score=61.37 Aligned_cols=53 Identities=17% Similarity=0.493 Sum_probs=44.3
Q ss_pred CccccccccccccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 78 YEFRCPISGEIMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
..|.||+|.+.+.+.+ .-||||.||..|+++.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 3688999999998753 2389999999999999974 668999999999877654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0009 Score=46.32 Aligned_cols=55 Identities=27% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+.+|..|+++|.+++........-....+++.|+.+|+++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3689999999999876655444445567899999999999999999999999875
|
... |
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0004 Score=66.53 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCccccccccccccCCc-----c---CCCcccccHHHHHHHHhcC------CCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPV-----V---LANGQTFDRPCIQRWLDEG------NRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~-----~---l~cgh~fc~~ci~~~~~~~------~~~CP~c~~~l~~ 126 (458)
..+..|.||++...++. . .+|.|.||..||..|-... .+.||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45788999999887766 3 4599999999999998422 3689999987654
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.083 Score=54.97 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=158.8
Q ss_pred hhhhhhhhHHhhc---CCcHHHHHHHHHHHHHH---h---hCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHH
Q 012677 166 SRSHLNSLLEKMS---SSLSDQKEAAKELRLLT---K---RMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236 (458)
Q Consensus 166 ~~~~l~~Lv~~l~---~~~~~~~~a~~~L~~l~---~---~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~ 236 (458)
.+..+-.+|.-+. ++..+|..|+.+|.+-. + .++..|..|.+ ..++.-++ .|.+++..|..
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq------vvcEatq~----~d~~i~~aa~~ 239 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ------VVCEATQS----PDEEIQVAAFQ 239 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee------eeeecccC----CcHHHHHHHHH
Confidence 3445666666663 44678888888886422 2 11222333322 22333333 48899999999
Q ss_pred HHHhccc-Cchh-hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-c-----------chh----Hh-hc--
Q 012677 237 TILNLSI-HDEN-KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-S-----------NKL----II-GK-- 295 (458)
Q Consensus 237 ~L~~ls~-~~~~-~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~-----------~~~----~i-~~-- 295 (458)
.|..+.. .-+. ...+.++ ..+.-+.-+++.+.++...++..=.+++..+ + +.. .. ..
T Consensus 240 ClvkIm~LyY~~m~~yM~~a--lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~ 317 (859)
T KOG1241|consen 240 CLVKIMSLYYEFMEPYMEQA--LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQAL 317 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHH
Confidence 8876643 2222 2222222 4444566677889999999988877776432 1 111 01 11
Q ss_pred cCchHHHHHHhhcC-------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHh----ccCCc--HHHHHHHHHH
Q 012677 296 LGAMTPLIDLLEEG-------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKI----MENSL--VDELLAILAM 362 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll----~~~~~--~~~a~~~L~~ 362 (458)
.+++|.|+.+|... +-..-..|..+|.-++. .++...+++.+.++ +++++ ++.++.++..
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 36778888888541 22344555555555432 22333445555544 45554 5557777776
Q ss_pred hcCCH-HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHH
Q 012677 363 LSSHQ-DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 363 La~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A 441 (458)
+-..+ ..+..-+-.+++|.++.++.++ +--++..+.|+|..++.+-+..........+.+..++.-+. +.|++..++
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~ 468 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNV 468 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHH
Confidence 66633 3444445677899999999954 58889999999999999876432222222233333333333 468999999
Q ss_pred HHHHHHHHhhHhh
Q 012677 442 NGILERLNKAALI 454 (458)
Q Consensus 442 ~~~L~~l~~~~~~ 454 (458)
+|++-.|.++.+.
T Consensus 469 CWAf~~Laea~~e 481 (859)
T KOG1241|consen 469 CWAFISLAEAAYE 481 (859)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999977653
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.074 Score=51.91 Aligned_cols=182 Identities=23% Similarity=0.270 Sum_probs=121.5
Q ss_pred hhhhhHHhhcC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..+++.+.+ +...|..|...+..+.. ..+++.|..++.+. +..++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~----~~~vr~~a~~aLg~~~~---- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDE----DPRVRDAAADALGELGD---- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCC----CHHHHHHHHHHHHccCC----
Confidence 56677777754 46677777766544332 46789999999875 77889999887765431
Q ss_pred hhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChH------------HH
Q 012677 248 KRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPL------------AM 314 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------------~~ 314 (458)
...++.|+.+|. +++..+|..++.+|..+-. ..++.+|+..+.+.... ++
T Consensus 104 -------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 104 -------PEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 136788999999 5899999999999987733 23478888888775532 23
Q ss_pred HHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCCh
Q 012677 315 KDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCE 392 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 392 (458)
..++.+|..+ .+.-.++.+..++.+. .++..+..+|..+.... ..+.+.+...+.+. +.
T Consensus 167 ~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~ 227 (335)
T COG1413 167 AAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SL 227 (335)
T ss_pred HHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CH
Confidence 3333333332 2345678888888877 57888888888887654 23345556666643 36
Q ss_pred hHHhHHHHHHHHHh
Q 012677 393 RNKENCAAILYNIC 406 (458)
Q Consensus 393 ~~~~~a~~~L~~L~ 406 (458)
.++..++.+|..+-
T Consensus 228 ~vr~~~~~~l~~~~ 241 (335)
T COG1413 228 EVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHHHhcccC
Confidence 66666666655543
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00074 Score=44.48 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=22.8
Q ss_pred cccccccc--cCCccC--CCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 82 CPISGEIM--TDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 82 C~ic~~~~--~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
||+|.+.+ +|--.. +||+.+|+.|..+-.......||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 79999888 222233 58999999999998875677899999864
|
|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00038 Score=49.78 Aligned_cols=45 Identities=31% Similarity=0.583 Sum_probs=31.6
Q ss_pred ccccccccccC-CccC-CCcccccHHHHHHHHhcC--CCCCCCCCccCC
Q 012677 81 RCPISGEIMTD-PVVL-ANGQTFDRPCIQRWLDEG--NRTCPQTRQVLS 125 (458)
Q Consensus 81 ~C~ic~~~~~~-p~~l-~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~ 125 (458)
.||-|.-.-.| |.++ -|.|.|+..||.+|+... ...||.||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34444433333 4444 599999999999999743 248999998764
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00068 Score=61.92 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=40.4
Q ss_pred cccccc-ccccCCcc----CCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 81 RCPISG-EIMTDPVV----LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 81 ~C~ic~-~~~~~p~~----l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.||+|. +.+.+|-+ -+|||+.|.+|+...|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499997 45666632 28999999999999999888899999999877654
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00029 Score=67.30 Aligned_cols=35 Identities=23% Similarity=0.651 Sum_probs=31.6
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHh
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~ 111 (458)
++++.||||...+++|++++|||..|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 56789999999999999999999999999876654
|
|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00086 Score=63.34 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
...+....|-||.+...+.+.+||||..| |..-... ...||+||+.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 34556678999999999999999999987 7654432 456999998764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.087 Score=53.66 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=123.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
.+|.++.-+.......+.+++..|..++...+..-...-..+||.|...|.+.++++++.+..+|..++..-+|.. +.
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d--I~ 332 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD--IQ 332 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH--HH
Confidence 3444444444446677888999999888776666666668899999999999999999999999999988776654 11
Q ss_pred hCcHHHHHHHhccCC-cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCch-
Q 012677 337 AGAVRVILRKIMENS-LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRE---STCERNKENCAAILYNICFTDRT- 411 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~~-~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~- 411 (458)
-.+|.|++.+.++. -...++..|..-..-. .+++-.+..++-+|+. ..+...+..++.+..|+|.--++
T Consensus 333 -~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 333 -KIIPTLLDALADPSCYTPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred -HHHHHHHHHhcCcccchHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 26788888888885 5666666655433210 0222334444555542 24578889999999999986533
Q ss_pred -hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 412 -RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 412 -~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
....++ ...+|-|-..+.+..|.+|.-++.+|..+-
T Consensus 407 ~~lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 407 KDLAPFL--PSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred HHHhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 222222 223444455555557889999999995444
|
|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00076 Score=63.66 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=39.7
Q ss_pred CccccccccccccCCccCCCcc-cccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh-~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....|-||+...+|=+++||-| ..|..|-....- .++.||+||+++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 3567999999999999999999 479999876653 35579999998754
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.28 Score=44.40 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=143.4
Q ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhc-------cCCC-CCCCChhHHHHHHHHHHhc
Q 012677 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP-------LSPG-RADTDPGLLEDLITTILNL 241 (458)
Q Consensus 170 l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-------L~~~-~~~~~~~~~~~a~~~L~~l 241 (458)
+..++-.+. +++.++.|+..|..--+..+.....+-.+-|.+..|+.- |+.. .......-..+|+..|..+
T Consensus 28 ~~~~i~~l~-~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcv 106 (293)
T KOG3036|consen 28 AYQLILSLV-SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCV 106 (293)
T ss_pred hhhHHHHhh-CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHH
Confidence 445555553 345566677666654443333333333323443333221 1111 1112335567889999999
Q ss_pred ccCchhhhhhhcCCCCHH-HHHHHHhcC-----CHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHH
Q 012677 242 SIHDENKRLVAENPLAIP-LLIDSVRTG-----TIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLA 313 (458)
Q Consensus 242 s~~~~~~~~i~~~~~~i~-~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~ 313 (458)
+.|++.|..+..+. +| -|-.+|..+ .+-.|-.+.+++..|..+++. -..+...++||..++.+..|+...
T Consensus 107 ASHpdTr~~FL~A~--iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 107 ASHPDTRRAFLRAH--IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred hcCcchHHHHHHcc--ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 99999999999974 45 334555432 467899999999999987754 444567899999999999999999
Q ss_pred HHHHHHHHHHhcccccchhHHHh----hC----cHHHHHHHh-ccC--CcHHHHHHHHHHhcCCHHHHHHHHhcC--CH-
Q 012677 314 MKDVASAIFSLCILLENKRRAVH----AG----AVRVILRKI-MEN--SLVDELLAILAMLSSHQDAIEEIGELG--AI- 379 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~----~g----~v~~Lv~ll-~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g--~i- 379 (458)
+.-|+..+..+-.++.+-.-+.. -- .+..++.-| +.+ .+.++++++..+|+.++..|..+...- .+
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr 264 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR 264 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc
Confidence 99999999888877764332211 12 233333333 333 467889999999999999988874421 11
Q ss_pred -HHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 380 -PCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 380 -~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
...-.++++ +...+..-...+.||+.
T Consensus 265 d~tfs~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 265 DGTFSLLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred cchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence 122344442 24555544445555543
|
|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00075 Score=45.49 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=37.6
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
.+..|-.|...-...+++||||..|+.|..-+ ..+.||+|+.++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 44568888888888899999999999996533 2457999999987543
|
|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.00094 Score=63.21 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=33.4
Q ss_pred cccccccccccCC---ccC-CCcccccHHHHHHHHhcCC--CCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDP---VVL-ANGQTFDRPCIQRWLDEGN--RTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p---~~l-~cgh~fc~~ci~~~~~~~~--~~CP~c~~~l~~ 126 (458)
..|.||-+.+..- -.+ .|||+|+..|+.+||.-.+ ++||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4699995554321 123 5999999999999998432 489999954443
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.013 Score=51.83 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcC---------------CCCHHHHHHHHhc------CCHHHHHHHHHHHHHhhc
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAEN---------------PLAIPLLIDSVRT------GTIETRRNAAAALFSLSA 285 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~---------------~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~ 285 (458)
+......++..|.|+++.+.....+... +..+..|+.++.. ...+-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 4456778888999999887765544332 2356677877766 235567888999999999
Q ss_pred cCcchhHhhc--cCc--hHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh---CcHHHHHHHhccC
Q 012677 286 LDSNKLIIGK--LGA--MTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA---GAVRVILRKIMEN 350 (458)
Q Consensus 286 ~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~---g~v~~Lv~ll~~~ 350 (458)
..+.|..+.+ .+. |..|+..+.+.+..-|.-++.+|.|+|.+.+....+... +++|.|+--|..+
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9999999887 344 777888877788888889999999999999988887763 5666666555543
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00068 Score=61.67 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=33.8
Q ss_pred ccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
...|.||++..+|.+.|+|||. -|..|=.+ -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6789999999999999999995 57777321 237999998653
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.13 Score=53.57 Aligned_cols=269 Identities=12% Similarity=0.097 Sum_probs=164.6
Q ss_pred hhhhhHHhhc-CCc-HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKMS-SSL-SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+..|+.... +.+ ..+..++..|+-++.+-. .......+..++..++.-.... +++..++-.|+.+|.|.-....
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~-pevl~~~sN~iLtaIv~gmrk~--e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDID-PEVLEQQSNDILTAIVQGMRKE--ETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCC-HHHHHHHHhHHHHHHHhhcccc--CCchhHHHHHHHHHHHHHHHHH
Confidence 4455555553 222 366778888888886532 2233334345566666555442 3467889999999987532211
Q ss_pred -hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 -NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 -~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
|-..=.+.+.++....+.-++++.+++..|...|..+... .+.-..-.....+..-+.-++++++++...+..-=+++
T Consensus 207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1111111123445556677788999999999998887543 23322222233455555666788888888888777766
Q ss_pred cccccc------------hh----HHHh---hCcHHHHHHHhccC---------CcHHH---HHHHHHHhcCCHHHHHHH
Q 012677 325 CILLEN------------KR----RAVH---AGAVRVILRKIMEN---------SLVDE---LLAILAMLSSHQDAIEEI 373 (458)
Q Consensus 325 ~~~~~~------------~~----~i~~---~g~v~~Lv~ll~~~---------~~~~~---a~~~L~~La~~~~~~~~i 373 (458)
|..+-. .. ...+ .+++|.|+++|... ..... |+..+..++.+.
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~------ 360 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD------ 360 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc------
Confidence 643311 11 0111 27888999999631 12233 333333333322
Q ss_pred HhcCCHHHHHH----HHhhcCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 374 GELGAIPCLLR----IIRESTCERNKENCAAILYNICFTDRTR-TREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 374 ~~~g~i~~Lv~----ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.++.++. -+++ ++-.-++.|+.++..+-.+++.. ...++ .++++.+++++.+.+--+++.++|.|..+
T Consensus 361 ----Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI 433 (859)
T KOG1241|consen 361 ----IVPHVLPFIEENIQN-PDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRI 433 (859)
T ss_pred ----chhhhHHHHHHhcCC-cchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence 3344444 4444 34788999999999998877643 33344 67899999999988888999999999999
Q ss_pred HhhHh
Q 012677 449 NKAAL 453 (458)
Q Consensus 449 ~~~~~ 453 (458)
+.+.+
T Consensus 434 ~d~l~ 438 (859)
T KOG1241|consen 434 ADFLP 438 (859)
T ss_pred Hhhch
Confidence 98765
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0049 Score=42.56 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=45.5
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
+.++..|+++|.+++...+......+ ...++.|..++.+.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 35789999999998887766555544 56889999999999999999999999865
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.094 Score=56.41 Aligned_cols=215 Identities=11% Similarity=0.067 Sum_probs=146.5
Q ss_pred HHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhc-C-
Q 012677 233 DLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEE-G- 309 (458)
Q Consensus 233 ~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~-~- 309 (458)
.|+..|..+----+-..-+.-.-|+.|-++++|+++..++|-.-+.+=..+-..|++ ...+++.++-...++.|.. +
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence 344444333322223333333336999999999999999998887776666555555 4456776666666666665 3
Q ss_pred -ChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--C-cHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHH
Q 012677 310 -HPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--S-LVDELLAILAMLSS-HQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 310 -~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~-~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv 383 (458)
+++-+.-|+-+|..+..+-. .+....+.+.+..-+..|.++ . ++.-++-.|..|=. .++.|=.=.+.++...|.
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 45778888888988887654 566678889999989999885 2 45557777777765 566666567889999999
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhccC----chhHHHHH------------Hhhhhh---HHHHHHhhhCCHHHHHHHHHH
Q 012677 384 RIIRESTCERNKENCAAILYNICFTD----RTRTREIM------------EEENAN---GTLSRLAENGTSRAKRKANGI 444 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~------------~~~g~~---~~L~~ll~~~~~~~~~~A~~~ 444 (458)
.+|.++ .++++..|+-||..+-... ++. ...+ .+.... ..++.++..+++-++...+.+
T Consensus 649 ~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~-~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 649 LLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQ-TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHhcCc-cHHHHHHHHHHHHHHhcccccccchh-hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 999975 4999999999999988752 211 1111 111112 256666778888888777777
Q ss_pred HHHHH
Q 012677 445 LERLN 449 (458)
Q Consensus 445 L~~l~ 449 (458)
|..+.
T Consensus 727 ls~~~ 731 (1387)
T KOG1517|consen 727 LSHFV 731 (1387)
T ss_pred HHHHH
Confidence 66543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.19 Score=50.78 Aligned_cols=259 Identities=18% Similarity=0.136 Sum_probs=126.0
Q ss_pred hhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+++++..|-++ .-+..++++.+..++..+ ....+.+ -.|..|-.+|+++ ....+-.|+.+|..|+...+
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~--~~vs~L~~fL~s~----rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD--QTVSSLRTFLKST----RVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH--HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHhhCC
Confidence 456666777444 567788888888888654 1222332 4567777778775 67888899999999987655
Q ss_pred hhhhhhcC---------CCCHH--HHHHHHhcCCHHHHHHHHHHHHHhhccC-cc-hhHhhc-------------cCchH
Q 012677 247 NKRLVAEN---------PLAIP--LLIDSVRTGTIETRRNAAAALFSLSALD-SN-KLIIGK-------------LGAMT 300 (458)
Q Consensus 247 ~~~~i~~~---------~~~i~--~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~-~~~i~~-------------~g~i~ 300 (458)
.+...... +.-+. ++..+|+.|+.+....-...+-++..+- ++ +..+++ ...+.
T Consensus 336 ~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~ 415 (898)
T COG5240 336 QKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLD 415 (898)
T ss_pred ceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHH
Confidence 33222221 11111 2334455555444444444444433221 11 111111 01122
Q ss_pred HHHHHh-hcCChHHHHHHHHHHHHhcccc-cchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 301 PLIDLL-EEGHPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 301 ~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
.|...| +.|..+.+..+..+|..+.... +.+.+ ++..|...+.+.+.-+-++++|.-|-. .|..+. -|
T Consensus 416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~----P~ 486 (898)
T COG5240 416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITVRILGILGREGPRAKT----PG 486 (898)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC----cc
Confidence 222211 2233334444444444333322 22222 222333333333333333333333322 110000 00
Q ss_pred -CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 378 -AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 378 -~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.|..+..-+.- .+.-++..|+.+|...+....+. +. .......|-+.+.+.++.+++.|.-+|++|.
T Consensus 487 ~yvrhIyNR~iL-EN~ivRsaAv~aLskf~ln~~d~---~~-~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLIL-ENNIVRSAAVQALSKFALNISDV---VS-PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHH-hhhHHHHHHHHHHHHhccCcccc---cc-HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 12222222221 23677888888887766654432 11 1223445556677788999999999999986
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0016 Score=62.40 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=40.8
Q ss_pred CCCccccccccccccC---CccCCCcccccHHHHHHHHhcCC--CCCCCCCccC
Q 012677 76 LPYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGN--RTCPQTRQVL 124 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~--~~CP~c~~~l 124 (458)
...-|.|||-.+.-.| |+.+.|||..++..+.+..+.|. +.||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4567899998876653 78899999999999999998776 7999996543
|
|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00055 Score=70.13 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=34.1
Q ss_pred cccccccccccCCcc---CCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVV---LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~---l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
-.||+|..-+.|-.. .+|+|.||..||..|-.- ..+||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 346666665555433 269999999999999874 5689999988765
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.055 Score=49.69 Aligned_cols=200 Identities=14% Similarity=0.129 Sum_probs=127.6
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhc-------cCCCCC-CCChhHHHHHHHHHHhcccCc
Q 012677 174 LEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP-------LSPGRA-DTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 174 v~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-------L~~~~~-~~~~~~~~~a~~~L~~ls~~~ 245 (458)
|..|. +++.|..|+..|..--...+.....+-.+.|.+..|++= ++.+.- .....-..+|+..|..++.|+
T Consensus 3 i~~L~-~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshp 81 (262)
T PF04078_consen 3 ILDLC-NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHP 81 (262)
T ss_dssp HHHTS-SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-T
T ss_pred hHHhc-CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcCh
Confidence 34443 467788888777655444455555555556777666432 222100 001244567888888899999
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVA 318 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 318 (458)
+.|..+.++. +.--|..+|+..+ +.+|-.+.+++..|...++. -..+.+.+.||.-++.++.|+.-.+.-|.
T Consensus 82 etr~~Fl~a~-iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAt 160 (262)
T PF04078_consen 82 ETRMPFLKAH-IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVAT 160 (262)
T ss_dssp TTHHHHHHTT-GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHcC-chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence 9999999985 5545566776542 56789999999999986543 44566789999999999999988889899
Q ss_pred HHHHHhcccccchhHHH-------h-hCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 319 SAIFSLCILLENKRRAV-------H-AGAVRVILRKIM-EN--SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 319 ~aL~~L~~~~~~~~~i~-------~-~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
-.+..+-.++.+-.-+. . ..++..+|.-|. ++ .+-+..+++-..|+.++..+..+..
T Consensus 161 fIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 161 FILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99888877765333221 1 123444444333 33 3567777887888888877777653
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0022 Score=60.00 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=41.5
Q ss_pred CCCccccccccccccC--C-ccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 76 LPYEFRCPISGEIMTD--P-VVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~--p-~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
-...|.|||++..|.. + |.+ +|||.|+..+|.+.- ....||+|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4677999999999953 2 333 899999999999873 245799999999876543
|
|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0015 Score=68.51 Aligned_cols=47 Identities=21% Similarity=0.591 Sum_probs=36.3
Q ss_pred ccccccccccc--C---CccC--CCcccccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 80 FRCPISGEIMT--D---PVVL--ANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~--~---p~~l--~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
-.|+||..++. | |-.. .|.|-||..|+.+|++.+ ..+||.||..++.
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 35999998764 2 3332 388999999999999854 5699999987753
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.098 Score=53.20 Aligned_cols=263 Identities=11% Similarity=0.114 Sum_probs=150.3
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+..++..|. ..+.+|..|+.....++.--..+ -..+.. .|.| |.+-|. +.++++.--.+.++..+....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~i--LyE~lg----e~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGNI--LYENLG----EDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHH--HHHhcC----cccHHHHHHHHHHHHHHhhhh
Confidence 4555666664 55788888888877776421100 011111 2222 333333 347788777777766554332
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
..+..---..|++|.|..+|++....+..+.+..+..++..........+ .-+--.|+.+|.+-+.+++.+|...+..+
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 22211111236999999999999999999999999998876544333333 22344688888888999999999998887
Q ss_pred cccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh-cCCHHHHHHHHhh--cCChhHHhHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGE-LGAIPCLLRIIRE--STCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~-~g~i~~Lv~ll~~--~~~~~~~~~a~~~ 401 (458)
+.--. -..++..|+.-|+. +++-.++-..+ +...+.+ .|-...|=.+|.+ .....+|.-.+++
T Consensus 758 s~aiG------PqdvL~~LlnnLkv---qeRq~Rvctsv-----aI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 758 SRAIG------PQDVLDILLNNLKV---QERQQRVCTSV-----AISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred HhhcC------HHHHHHHHHhcchH---HHHHhhhhhhh-----hhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHH
Confidence 53211 12344444444433 22211111111 1111122 2322333333432 2236778877787
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++.+-..-.+....-+ ....|.|-..+.+-++.-++.|+.+++.|.-.++.
T Consensus 824 m~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 824 MCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 7777665544333333 33455566666677788899999999988765543
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.3 Score=53.43 Aligned_cols=219 Identities=14% Similarity=0.106 Sum_probs=130.9
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcC-CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhccCchHHH
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAEN-PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGKLGAMTPL 302 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~L 302 (458)
.+..+|.++-.+|..++..+......... ..+-..|.+.+++.....+...+.+|..|-.... ....+. ..|+.+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHH
Confidence 36789999999999888774322221111 0133345555556666777777777777654333 233222 235555
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhC------cHHHHHHHhccC----CcHHHHHHHHHHhcCCHHHHHH
Q 012677 303 IDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAG------AVRVILRKIMEN----SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 303 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g------~v~~Lv~ll~~~----~~~~~a~~~L~~La~~~~~~~~ 372 (458)
+-.++..+...++.|-.+|..+.. .....+.| .+...+..+..+ .....+.. |..+..--.....
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKN 818 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhc
Confidence 545566788999999999999873 11122222 455555555433 22222222 3323221222333
Q ss_pred HHhcCCHHHHHH----HHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 373 IGELGAIPCLLR----IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 373 i~~~g~i~~Lv~----ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
+++.+.++.+++ +|. +.++.+...|++.+..++...+...-..-. .-.++.+..++++++...+.++..+|..|
T Consensus 819 ~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444444555544 444 456999999999999999877643212111 23678888888999999999999999988
Q ss_pred HhhHh
Q 012677 449 NKAAL 453 (458)
Q Consensus 449 ~~~~~ 453 (458)
.+...
T Consensus 897 irkfg 901 (1176)
T KOG1248|consen 897 IRKFG 901 (1176)
T ss_pred HHHhC
Confidence 76543
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.085 Score=54.74 Aligned_cols=249 Identities=12% Similarity=0.130 Sum_probs=142.5
Q ss_pred CCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL 256 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 256 (458)
.++.+|.+|+..+..++.--... -..++. .|.| |.+.|.. .++++.--.+.+|..+...-.--+..--..+
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvv--LyEylge----eypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVV--LYEYLGE----EYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHH--HHHhcCc----ccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 45788999999888877421111 012222 3333 4455544 4777776655555544322111111111235
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
++|.|..+|++....++++++..+..++..........+ .-+--.|+.+|...+.+++.+|...+..++.-- .
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI------G 957 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI------G 957 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc------C
Confidence 899999999999999999999999999875533222222 223346888888889999999999998875321 1
Q ss_pred hhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHhc-C---CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 336 HAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGEL-G---AIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~~-g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
-..++..|+.-|+. +++-.++-..+ +...+.+. | ++|.|+.=-+.+ ...+|.-.+++|+.+-..-.+
T Consensus 958 PqdVLatLlnnLkv---qeRq~RvcTtv-----aIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKV---QERQNRVCTTV-----AIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred HHHHHHHHHhcchH---HHHHhchhhhh-----hhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHH
Confidence 12344444444433 22211110000 01111221 2 344444433333 377788788888777665544
Q ss_pred hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 412 RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 412 ~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
..+.-+ ....|.|-.-+.+-+..-++.|+.+++.|+-.
T Consensus 1029 mskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1029 MSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 333333 23556666666666777888888888887644
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.56 Score=48.71 Aligned_cols=230 Identities=14% Similarity=0.133 Sum_probs=132.3
Q ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--h
Q 012677 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--N 247 (458)
Q Consensus 170 l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--~ 247 (458)
|+.|+.+=++..-+++.|+.+|..|-+.+|.. +.. .+.+..++.+|.+. +..+.-.+...+..|++..+ .
T Consensus 151 I~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~-~~W~~riv~LL~D~----~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 151 IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNP-GEWAQRIVHLLDDQ----HMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred hHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cCh-hhHHHHHHHHhCcc----ccceeeehHHHHHHHHHcCCHHH
Confidence 45443322233455666666666666555543 222 46788899999874 55666666666766766544 2
Q ss_pred hhhhhcCCCCHHHHHHHHhc-------------CCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcC--C
Q 012677 248 KRLVAENPLAIPLLIDSVRT-------------GTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEG--H 310 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~--~ 310 (458)
+..+-. .+..|...... +.+=++...+++|.++-..+++ +..+. .+++.++...+.. +
T Consensus 223 k~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~ 297 (938)
T KOG1077|consen 223 KTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKS 297 (938)
T ss_pred hhhHHH---HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccc
Confidence 222211 11212221111 2345677777777777443333 33332 2344444443321 1
Q ss_pred hHHHH-HHHH----HHHHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHH
Q 012677 311 PLAMK-DVAS----AIFSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCL 382 (458)
Q Consensus 311 ~~~~~-~a~~----aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~L 382 (458)
..+++ +|-. -.-+|+.+- +....+.+ .+..|-++|.+. .++.-++..++.|++++...+.+... ...+
T Consensus 298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~I 373 (938)
T KOG1077|consen 298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTI 373 (938)
T ss_pred cchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHH
Confidence 12221 2222 222444333 33333333 456677778766 68999999999999988777777666 7888
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHH
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIME 418 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 418 (458)
+..|+...+.+++..|+..|+.+|.... ++.++.
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~~N--ak~IV~ 407 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDVSN--AKQIVA 407 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhchhh--HHHHHH
Confidence 9999866679999999999999998774 345553
|
|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0047 Score=59.23 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=49.2
Q ss_pred ccccccccccc------CCccCCCcccccHHHHHHHHhcCCCCCCCCCccC--CCC---CCcccHHHHHHHHHH
Q 012677 80 FRCPISGEIMT------DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL--SHT---VLIPNHLVREMISQW 142 (458)
Q Consensus 80 ~~C~ic~~~~~------~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l--~~~---~~~~n~~l~~~i~~~ 142 (458)
..|-||.+.+. -|..+.|||++|..|+.+.+..+...||+||.+. ... .+..|+.+-+.++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 46999988775 3778899999999999999887667899999994 332 355677777777654
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.28 Score=49.42 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCCh----HHHHHHHHHHHHhcccccchhHH
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHP----LAMKDVASAIFSLCILLENKRRA 334 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~L~~~~~~~~~i 334 (458)
..+..++.+++...+..|...|..|+.+......+....++..|.+++.+++. ......+.++..|-.+.-.--..
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 34777888888888888999999999988888888888889999999998743 56666777777665444311112
Q ss_pred HhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 335 VHAGAVRVILRKIMEN----SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+.-.+|.....+..-. .+-..|+..|.++... +.-+..+.++--+..|+..++.++ ..++..|+..|-.+....
T Consensus 166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRKA 244 (713)
T ss_pred cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhC
Confidence 2223344444444322 5678899999999884 556777777888999999999765 888888998888887655
Q ss_pred ch
Q 012677 410 RT 411 (458)
Q Consensus 410 ~~ 411 (458)
++
T Consensus 245 ~~ 246 (713)
T KOG2999|consen 245 PD 246 (713)
T ss_pred Ch
Confidence 53
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.004 Score=55.36 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHh
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD 111 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~ 111 (458)
+.+.+...|.+|++..+|||+.+-||.|||.||.+++-
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 34666778999999999999999999999999999875
|
|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0041 Score=57.80 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=35.2
Q ss_pred cccccccccc--CCcc--CCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 81 RCPISGEIMT--DPVV--LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 81 ~C~ic~~~~~--~p~~--l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
.||+|++.|. |--. .+||...|+.|....-..-+..||.||...+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 4999999883 3323 3699999999976554433568999999887654
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.11 Score=44.10 Aligned_cols=124 Identities=13% Similarity=0.123 Sum_probs=95.7
Q ss_pred hhhhcCCCCHHHHHHHHhcCC------HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHHHHH
Q 012677 249 RLVAENPLAIPLLIDSVRTGT------IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASA 320 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~------~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~a 320 (458)
.+++..+ |+..|++++..+. .+....+..++.+|-.+........+...|..++..++.. +..+.+.|+..
T Consensus 5 ~EFI~~~-Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRD-GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhcc-CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4566664 8999999999886 3677778888888877765455667777899999988765 68899999999
Q ss_pred HHHhcccccchhHHHh-hCcHHHHHHHhccC--CcHHHHHHHHHHhcC--CHHHHHHH
Q 012677 321 IFSLCILLENKRRAVH-AGAVRVILRKIMEN--SLVDELLAILAMLSS--HQDAIEEI 373 (458)
Q Consensus 321 L~~L~~~~~~~~~i~~-~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~--~~~~~~~i 373 (458)
|-++...++..-..|. .=-++.|+..|... .++..+++.+-.|-. +++-|+.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998887666555 45788899999866 678889988888755 44445544
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.17 Score=53.75 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=106.9
Q ss_pred ChhHHHHHHH-HHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHH
Q 012677 227 DPGLLEDLIT-TILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDL 305 (458)
Q Consensus 227 ~~~~~~~a~~-~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 305 (458)
+...+..|++ +|..++.+++ +.. ..|-+++...+.|.++++..---|...+...+....+ ++..+.+=
T Consensus 32 n~~~kidAmK~iIa~M~~G~d-----mss--Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kD 100 (757)
T COG5096 32 NDYKKIDAMKKIIAQMSLGED-----MSS--LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKD 100 (757)
T ss_pred ChHHHHHHHHHHHHHHhcCCC-----hHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhh
Confidence 4444555544 5556666655 111 4455666666778888887777777777666543333 46666666
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHH
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv 383 (458)
+.++++.+|..|++++..| +..-+-..+++++.+++.++ -+++.|+-++..+=. -.+..+.+.|.+..+.
T Consensus 101 l~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILK 172 (757)
T ss_pred ccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHH
Confidence 7778888888888888776 22223334778888888877 467777777666632 2344556677788888
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 384 RIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.++.+. ++.+..+|+.+|..+...
T Consensus 173 ~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCC-CchHHHHHHHHHHHhchh
Confidence 888765 488888888888887654
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.68 Score=48.09 Aligned_cols=260 Identities=13% Similarity=0.100 Sum_probs=154.4
Q ss_pred hhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhh
Q 012677 171 NSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKR 249 (458)
Q Consensus 171 ~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~ 249 (458)
..+-..| +.++..+.-|+..+.++-. .++++.+.. -|+ ++|.++. ...-++..|+-+|..|-+..+.
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~---DI~---KlLvS~~--~~~~vkqkaALclL~L~r~spD-- 181 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD---DIP---KLLVSGS--SMDYVKQKAALCLLRLFRKSPD-- 181 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh---hhH---HHHhCCc--chHHHHHHHHHHHHHHHhcCcc--
Confidence 3343444 4567777788888887654 345555543 355 4444442 1345556666666665544332
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC--cchhHhhccCchHHHHHHhhc-------------CChHHH
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD--SNKLIIGKLGAMTPLIDLLEE-------------GHPLAM 314 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~-------------~~~~~~ 314 (458)
++..|+....++.+|...+..+...+...+-.|+... +++..+.- ++..|-.+... +.|=.+
T Consensus 182 -l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 182 -LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred -ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 2333568888999999988888888888888888644 23443322 22223222211 245577
Q ss_pred HHHHHHHHHhccccc--chhHHHhhCcHHHHHHHhccC----CcHH-----HHHHHHHHhcCCHH-HHHHHHhcCCHHHH
Q 012677 315 KDVASAIFSLCILLE--NKRRAVHAGAVRVILRKIMEN----SLVD-----ELLAILAMLSSHQD-AIEEIGELGAIPCL 382 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~~~----~~~~-----~a~~~L~~La~~~~-~~~~i~~~g~i~~L 382 (458)
...+++|.+.-.-++ .+.++. .+++.++....++ +++. ..+--..+|+.+-+ ..+.+. .++..|
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L 334 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL 334 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence 788888888744333 333332 2344444444432 2221 12222234444322 233332 247888
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHHhhHhh
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
..+|.+-+ ..++.-|+.-++.|+..... ...+... .+.++..+. ..+.+++++|+.+|..||...+.
T Consensus 335 g~fls~rE-~NiRYLaLEsm~~L~ss~~s--~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 335 GQFLSHRE-TNIRYLALESMCKLASSEFS--IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred HHHhhccc-ccchhhhHHHHHHHHhccch--HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 89998644 89999999999999986543 2445433 677777777 45788999999999999976654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.018 Score=55.70 Aligned_cols=50 Identities=34% Similarity=0.625 Sum_probs=43.8
Q ss_pred cccccccccccCCccCC-CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 80 FRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
+.|.|.+++.++||+-| .||.|.+.-|++++.. +.+||+++++++..++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV 51 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELV 51 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHee
Confidence 36999999999999986 9999999999999986 56899999998865543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.18 Score=53.87 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=112.9
Q ss_pred hhhhHHhhc---CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 170 LNSLLEKMS---SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 170 l~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
+...++.|. .|.+++..|+..++.+...-..+-.... ...++.+++-|. +...+-.|++++..++...-
T Consensus 570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~------nEiTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG------NEITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh------chhHHHHHHHHHHHHHhccc
Confidence 444455552 4678888888888766643221111111 234555666555 44667788888887776543
Q ss_pred --hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 247 --NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 247 --~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+...+.. .+++.|...++......+.....++-.|..+... ..... .-++..|..++...+..+-+.|...|.
T Consensus 642 ~i~l~~~l~--~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 642 DIDLSPVLT--EILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred eeehhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333333 2788888888888778888777777777654311 11111 224445556666777788888999999
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIMENSLVDELLA 358 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~ 358 (458)
.+..........+..-+++.++.+++++-++-.++.
T Consensus 719 tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 719 TLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHH
Confidence 988887766666667788888998888744444333
|
|
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0063 Score=48.98 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=42.5
Q ss_pred CccccccccccccCCccC-C---CcccccHHHHHHHHhc--CCCCCCCCCccCCCCC
Q 012677 78 YEFRCPISGEIMTDPVVL-A---NGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTV 128 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l-~---cgh~fc~~ci~~~~~~--~~~~CP~c~~~l~~~~ 128 (458)
.-+.|.||.+...|...+ | ||...|..|....|+. -++.||+|++.+..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 346799999999999888 2 9999999999888873 3568999999987653
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.044 Score=48.60 Aligned_cols=119 Identities=18% Similarity=0.091 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhc----------------cCchHHHHHHhhcC------ChHHHHHHHHHHHHhcc
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGK----------------LGAMTPLIDLLEEG------HPLAMKDVASAIFSLCI 326 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~----------------~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~L~~ 326 (458)
+......++.+|.||+..+..+..+.+ ...+..|+.++..| ...-....+.++.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 344566778889999888877665443 23677888877662 34456788999999999
Q ss_pred cccchhHHHhh--Cc--HHHHHHHhccCC-c-HHHHHHHHHHhcCCHHHHHHHHhcC---CHHHHHHHHh
Q 012677 327 LLENKRRAVHA--GA--VRVILRKIMENS-L-VDELLAILAMLSSHQDAIEEIGELG---AIPCLLRIIR 387 (458)
Q Consensus 327 ~~~~~~~i~~~--g~--v~~Lv~ll~~~~-~-~~~a~~~L~~La~~~~~~~~i~~~g---~i~~Lv~ll~ 387 (458)
.++.|..+++. +. +..|+.++.+.+ + +.-++.+|.|+|.+.+....+.... .+|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999998875 44 666777766663 3 4449999999999988888887743 4555554444
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.37 Score=45.31 Aligned_cols=219 Identities=10% Similarity=0.088 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc--CCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHH
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT--GTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDL 305 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~l 305 (458)
-.+--|+..|.++....+.|..+-........++.++++ |..+++-+..-.+.-|+....-.+.|-. ...|.-|+.+
T Consensus 164 lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 164 LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888887777665544443466678888876 4678899999888888877655544443 5578888888
Q ss_pred hhcC-ChHHHHHHHHHHHHhcccc--cchhHHHhhCcHHHHHHHhccC-----CcHHH---HHHHHH----HhcC-----
Q 012677 306 LEEG-HPLAMKDVASAIFSLCILL--ENKRRAVHAGAVRVILRKIMEN-----SLVDE---LLAILA----MLSS----- 365 (458)
Q Consensus 306 L~~~-~~~~~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~---a~~~L~----~La~----- 365 (458)
.+.. ..++..-++..+.|++.-. .....+.-.|-+.+-++.|..+ +++.. .-..|. .|+.
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 8765 6678888999999998733 3444455566566667766543 11111 111111 1111
Q ss_pred ----------C---------HHHHHHHHhcC--CHHHHHHHHhhcCChh-HHhHHHHHHHHHhccCchhHHHHHHhhhhh
Q 012677 366 ----------H---------QDAIEEIGELG--AIPCLLRIIRESTCER-NKENCAAILYNICFTDRTRTREIMEEENAN 423 (458)
Q Consensus 366 ----------~---------~~~~~~i~~~g--~i~~Lv~ll~~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~ 423 (458)
+ ..|...+.+.+ .+..|.++++... +. .-..|+.=+..+....|+ .+.++..-|+-
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~-~nt~i~vAc~Di~~~Vr~~PE-~~~vl~Kyg~k 401 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNN-PNTWICVACSDIFQLVRASPE-INAVLSKYGVK 401 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCC-CCceEeeeHhhHHHHHHhCch-HHHHHHHhhhH
Confidence 1 22345554443 4788888888533 43 344566666666665554 35788889999
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 424 GTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 424 ~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
..+.+|+.+++++++-.|..+++.+-
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999998653
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.41 Score=43.40 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHH
Q 012677 312 LAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-------SLVDELLAILAMLSS--HQDAIEEIGELGAIPCL 382 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~L 382 (458)
.-..+|+..|..++++++-|..++++-..-.|..+|... -++-.+++++..|.. +.+.-..+...+.||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345688888999999999999999998877788887633 267789999999988 45567777899999999
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhH--HHHHHhhhhh-----HHHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRT--REIMEEENAN-----GTLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~g~~-----~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
++.+..+ |+..|..|.-++..|-..+.+-. -...+.--++ ..+..+...++.+.-.++.++..+|+..+..+
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 9999976 49999999999988876554210 0011111112 22334455678899999999998888777654
|
|
| >KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0055 Score=46.73 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=23.8
Q ss_pred CCcccccHHHHHHHHhcCCCCCCCCCcc
Q 012677 96 ANGQTFDRPCIQRWLDEGNRTCPQTRQV 123 (458)
Q Consensus 96 ~cgh~fc~~ci~~~~~~~~~~CP~c~~~ 123 (458)
.|.|.|+..||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 59999999999999996 4579999765
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.3 Score=42.62 Aligned_cols=188 Identities=18% Similarity=0.154 Sum_probs=116.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhccc---ccchhHHH
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL---LENKRRAV 335 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~---~~~~~~i~ 335 (458)
.+..+.......|+.+...|.++-........+.+ ...+..+.+.++.|+.+-+..|+.++.-++.. .+....+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 44555556788999999888887655433334433 44678888888888777777788877777654 23344444
Q ss_pred hhCcHHHHHHHhccC----CcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHH--HHHHhh---------cCChhHHh
Q 012677 336 HAGAVRVILRKIMEN----SLVDELLAILAMLSS----HQDAIEEIGELGAIPCL--LRIIRE---------STCERNKE 396 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~L--v~ll~~---------~~~~~~~~ 396 (458)
+ ...|.|.+.+.++ ..+..|+.+|.-++. .++.-....+. +..+ ...++. .+++.+..
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~--le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMES--LESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHH--HHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 4 4788889998876 233445555554433 22222211111 1111 111111 11346777
Q ss_pred HHHHHHHHHhccCch-hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 397 NCAAILYNICFTDRT-RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.|+.+-.-|...-+. .....+ ...++.|..++.+.+..+|..|-..|..|.+...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 777777777655443 333333 3468999999999999999999999998876554
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.052 Score=42.35 Aligned_cols=69 Identities=7% Similarity=0.103 Sum_probs=51.6
Q ss_pred cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhc
Q 012677 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLS 364 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La 364 (458)
...+++++..+.+.+..+|..|+.+|+|++..........-..+++.|.+++.++ +-...++..|-+|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4579999999999999999999999999986654332222247888888888887 34555667666653
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.83 Score=45.40 Aligned_cols=145 Identities=11% Similarity=0.152 Sum_probs=103.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCc----chhHhhccCchHHHHHHhhcC-------ChHHHHHHHHHHHHhccccc
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDS----NKLIIGKLGAMTPLIDLLEEG-------HPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L~~~~~ 329 (458)
+..+++..+.+-|-.|.-....+..+++ +++.+.++=+.+.+=++|.++ +.--+.-++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4556666677777777777788887664 677888977899999999763 22345667777888888776
Q ss_pred c--hhHHHhhCcHHHHHHHhccC---C------cHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 330 N--KRRAVHAGAVRVILRKIMEN---S------LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 330 ~--~~~i~~~g~v~~Lv~ll~~~---~------~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
- ...++ +.||.|.+.++.+ + +.+.+-..|+.+++++.+...++..|+++.+.++-.-.+-..-+.-+
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 3 33344 4689999999743 2 67889999999999999999999999999999776533323334445
Q ss_pred HHHHHHHhc
Q 012677 399 AAILYNICF 407 (458)
Q Consensus 399 ~~~L~~L~~ 407 (458)
+.++.-+..
T Consensus 174 l~Vlll~~~ 182 (698)
T KOG2611|consen 174 LKVLLLLVS 182 (698)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.15 Score=53.37 Aligned_cols=259 Identities=13% Similarity=0.090 Sum_probs=137.5
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
....++.+.+. .++.+|..+.-....+=..+ .....+ .|.+..|-+++.+. ++.+..+|+.+|..+...+.
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~-~gl~~~L~~ll~D~----~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVED-SGLVDALKDLLSDS----NPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccc-cchhHHHHHHhcCC----CchHHHHHHHHHHHHHHhCC
Confidence 35566666675 45677777766665555433 344555 89999999999864 88999999999998876554
Q ss_pred hhhhhhcCCCCHHHH-HHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 NKRLVAENPLAIPLL-IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 ~~~~i~~~~~~i~~L-v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+...+. ..+.+ -.+|...+.-..-.-+.+|-.++..-.... .+ ...++.+...|.+.+..+...+..++.++
T Consensus 193 ~~~~~~----l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 193 SVNLLE----LNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCccc----ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 311111 11222 233333333333333444555544322211 11 22345555556666666666666666665
Q ss_pred cccccchhHHHhhCcHHHHHHHhccCC-cH------------------------------------HHHHHHHHHhcCCH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMENS-LV------------------------------------DELLAILAMLSSHQ 367 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~-~~------------------------------------~~a~~~L~~La~~~ 367 (458)
..........+-...-++|+.++..++ ++ ..=+.++..++...
T Consensus 267 ~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~ 346 (734)
T KOG1061|consen 267 VKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA 346 (734)
T ss_pred HHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh
Confidence 544443333333345555555555442 11 11222222222111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
...+ .+.-|.+.-.. -+.+....+++++.+++...+.. .+.++.|.+++...-+.+.+.+...++.
T Consensus 347 nl~q------vl~El~eYate-vD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~d 412 (734)
T KOG1061|consen 347 NLAQ------VLAELKEYATE-VDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRD 412 (734)
T ss_pred HHHH------HHHHHHHhhhh-hCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHh
Confidence 1100 01111122222 24667778888888887754321 4567777777776666666667777777
Q ss_pred HHhhHhh
Q 012677 448 LNKAALI 454 (458)
Q Consensus 448 l~~~~~~ 454 (458)
+-++.++
T Consensus 413 ilRkyP~ 419 (734)
T KOG1061|consen 413 ILRKYPN 419 (734)
T ss_pred hhhcCCC
Confidence 7666554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.14 Score=55.19 Aligned_cols=155 Identities=11% Similarity=0.007 Sum_probs=119.2
Q ss_pred ccCchHHHHHHhhcCChHHHHHHHHHHHHh-cccccchhHHHhhCcHHHHHHHhccC-----CcHHHHHHHHHHhcC-CH
Q 012677 295 KLGAMTPLIDLLEEGHPLAMKDVASAIFSL-CILLENKRRAVHAGAVRVILRKIMEN-----SLVDELLAILAMLSS-HQ 367 (458)
Q Consensus 295 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L-~~~~~~~~~i~~~g~v~~Lv~ll~~~-----~~~~~a~~~L~~La~-~~ 367 (458)
..|++|..++||++...+.+.--+-.=..+ +.++..+..++..++-...++.|.++ +-+..|+-+|..++. .+
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 479999999999998777766444443344 44544555688888878888888773 335558888888888 68
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
.+++...+.+.+..-++.|.++..+-++.-.+-+|..|....... +-.-.+.++...|..++.+..++++..|+-+|..
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A-rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA-RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh-hhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 899999999999888888886434788899999999999876532 2333456788899999999999999999999988
Q ss_pred HHh
Q 012677 448 LNK 450 (458)
Q Consensus 448 l~~ 450 (458)
+-.
T Consensus 669 fl~ 671 (1387)
T KOG1517|consen 669 FLS 671 (1387)
T ss_pred Hhc
Confidence 765
|
|
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0066 Score=48.59 Aligned_cols=32 Identities=19% Similarity=0.557 Sum_probs=26.0
Q ss_pred CCCccccccccccccCCcc--CCCcccccHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVV--LANGQTFDRPCIQ 107 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~--l~cgh~fc~~ci~ 107 (458)
+.++-.|++|...+.+++. .||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4556679999998887654 3999999999975
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 []. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.18 Score=52.39 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=96.9
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhH---HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHH-HHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRR---AVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQD-AIE 371 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~-~~~ 371 (458)
.+..++..|++.++.+++.|+..+..|+..-..+.. +...|+| |.+.|.+. ++.-..+.+|..+...-. .+.
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 344566788899999999999999999875554433 2223443 55666544 444444444443332110 010
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.==-.+.+|.|.-+|++-+ ++++++++..+..||...++.. ...+=.-.---|++++.+.+..+++.|...+..+++.
T Consensus 878 ~pPi~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v-~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYV-SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCChhhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 0011367899999999766 9999999999999999887532 1111011222367778888889999999888888765
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0023 Score=67.40 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=39.0
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCC-CCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNR-TCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~-~CP~c~~~l~~ 126 (458)
+.|++|.+ ..++++++|||.||..|+.+.+..... .||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 888888999999999999998875433 69999877654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.67 Score=40.68 Aligned_cols=92 Identities=22% Similarity=0.206 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCc-hHHHHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGA-MTPLIDL 305 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~l 305 (458)
++.++.+++-+++-|+..-+ .+++. .+|.+...|+++++.+|..|+..|..|...+-- .-.|- +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve~--~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVEP--YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHHh--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHH
Confidence 45788899999988876543 33342 788899999999999999999999999875422 11233 4788888
Q ss_pred hhcCChHHHHHHHHHHHHhccc
Q 012677 306 LEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~ 327 (458)
+.+.+++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999776
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.12 Score=47.76 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 353 VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 353 ~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
...|+.+|..++- +|..|..+.+..++..|+.+|....++.++.+++.+|..+...++.+++ ..++.+|+..+..+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHc
Confidence 4557889999988 9999999999999999999996555699999999999999988887765 5566888999999987
Q ss_pred hC--CHHHHHHHHHHHHHHH
Q 012677 432 NG--TSRAKRKANGILERLN 449 (458)
Q Consensus 432 ~~--~~~~~~~A~~~L~~l~ 449 (458)
+. +..++-+....|..+-
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 64 5568888877776543
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0053 Score=58.28 Aligned_cols=44 Identities=32% Similarity=0.715 Sum_probs=35.3
Q ss_pred cccccccccccc-CC---ccCCCcccccHHHHHHHHhc-CCCCCCCCCc
Q 012677 79 EFRCPISGEIMT-DP---VVLANGQTFDRPCIQRWLDE-GNRTCPQTRQ 122 (458)
Q Consensus 79 ~~~C~ic~~~~~-~p---~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~ 122 (458)
++.|..|++.+- .| -.+||.|.||..|+.+++.+ +..+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 577999998762 22 34799999999999999854 4579999993
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.95 Score=48.66 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=141.7
Q ss_pred hhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhh
Q 012677 172 SLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL 250 (458)
Q Consensus 172 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 250 (458)
.|++.+ ++|-+.|-.|...|-.-.....-.-..=.+ ...+..|+++|.+. +.++|..|++.|+.|++.-. ..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe-~kvv~~lLklL~D~----ngEVQnlAVKClg~lvsKvk--e~ 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSE-RKVVKMLLKLLEDK----NGEVQNLAVKCLGPLVSKVK--ED 81 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccch-hHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHhhch--HH
Confidence 566777 456677776766554322211101011112 45678888888875 88999999999998873211 11
Q ss_pred hhcCCCCHHHHHHHHhcCCHHHHHHHHHHH-HHhhccCcchhHhhccCchHHHHHHhhcC------ChHHHHHHHHHHHH
Q 012677 251 VAENPLAIPLLIDSVRTGTIETRRNAAAAL-FSLSALDSNKLIIGKLGAMTPLIDLLEEG------HPLAMKDVASAIFS 323 (458)
Q Consensus 251 i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~ 323 (458)
-++. .+..|..-+-++....|.-+.-.| ..++...+.........+.+.+...|... ...++..++..+.-
T Consensus 82 ~le~--~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d 159 (1233)
T KOG1824|consen 82 QLET--IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD 159 (1233)
T ss_pred HHHH--HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence 1111 233333333334444443333332 22333332222222334455555544332 33366666666554
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
.-..-..-..-...+.+..++--+.+. -++++++.+|..|+.. .+.=. +.+..|++=|....+...-.--+
T Consensus 160 ~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 160 VLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYI 234 (1233)
T ss_pred HHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHH
Confidence 322211111113345666666666666 5789999999999873 22211 23455555555433344455556
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHh---hhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLA---ENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll---~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.+|..++.....+.-.-. ...++.+.+.. ...++..+++...++..+-+.+|.
T Consensus 235 q~l~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 235 QCLAAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 667777765542211111 34567777776 556788999999999887766554
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.6 Score=43.01 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=120.4
Q ss_pred CHHHHHHHHHHHHHhhc-cCcchhHhhc-cCchHHHHH-Hh------hcC--Ch---HHHHHHHHHHHHhcccccchhHH
Q 012677 269 TIETRRNAAAALFSLSA-LDSNKLIIGK-LGAMTPLID-LL------EEG--HP---LAMKDVASAIFSLCILLENKRRA 334 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~-lL------~~~--~~---~~~~~a~~aL~~L~~~~~~~~~i 334 (458)
+++.|+.|..-|..--. .++-...+.. -|.+..|++ +. ..+ +. .-..+|+..|..++.+++-|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778865544433221 1222334444 777777765 22 222 12 23456777888999999999999
Q ss_pred HhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 335 VHAGAVRVILRKIMEN-------SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
+++...-.|..+|... .++-.++++++.|.+ +++.-..+...+.+|..++.|..+ ++-.|..|.-++..|
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKI 166 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKI 166 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence 9999888888888633 357779999999998 567788889999999999999976 488999999999888
Q ss_pred hccCch---------hHHHHHHhhhhhHH-HHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 406 CFTDRT---------RTREIMEEENANGT-LSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 406 ~~~~~~---------~~~~~~~~~g~~~~-L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
-..+.+ +..++. ..+.. +..+....+++.-++....-..|+.++..+
T Consensus 167 L~dd~GL~yiC~t~eRf~av~---~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVA---MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHH---HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HcchhHHHHHhcCHHHHHHHH---HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 665432 221221 12222 333455678888888888888888766553
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.05 Score=55.64 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=140.6
Q ss_pred HhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC------c
Q 012677 215 LLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD------S 288 (458)
Q Consensus 215 Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~------~ 288 (458)
|..+..+. |..++..|+..|..|+..-. +-+. .....+..++..+.++|..|+.++.-++.-. +
T Consensus 203 l~~~~~~~----D~~Vrt~A~eglL~L~eg~k----L~~~--~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 203 LIYLEHDQ----DFRVRTHAVEGLLALSEGFK----LSKA--CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHhcCC----CcchHHHHHHHHHhhccccc----ccHH--HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 55554443 67788888888877764322 1111 3455788888889999999988776655322 1
Q ss_pred -chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccCC-cHHHHHHHHHHh--
Q 012677 289 -NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMENS-LVDELLAILAML-- 363 (458)
Q Consensus 289 -~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~~-~~~~a~~~L~~L-- 363 (458)
+...+. ..++..+...+++.+..++..|+.+|..+-...+ ...+-.+..++. -++... ..++.-....+-
T Consensus 273 ~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 273 SEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred hhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhhhhhcccchHHHHhcCCc
Confidence 112222 3367788888888899999999999988755332 233322222222 111110 111111111111
Q ss_pred ----------cC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 364 ----------SS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 364 ----------a~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
.+ .++....|+.+|+.-.+|.=|.+.- -+++.+|+..++.|+...+.-. ...++.|+.+..
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf-~EVR~AAV~Sl~~La~ssP~FA------~~aldfLvDMfN 420 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF-YEVRRAAVASLCSLATSSPGFA------VRALDFLVDMFN 420 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHH-HHHHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHhc
Confidence 00 2334556788999999999998654 8999999999999999777532 235788899888
Q ss_pred hCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 432 NGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 432 ~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
+.-..++.+|..+|..++.+-..+
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l~i~ 444 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHLAIR 444 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHheec
Confidence 888889999999999998775443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.4 Score=43.23 Aligned_cols=270 Identities=10% Similarity=0.057 Sum_probs=157.6
Q ss_pred hhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHh-hccCCCCCCCChhHHHHHHHHHHhcccC-
Q 012677 169 HLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLL-SPLSPGRADTDPGLLEDLITTILNLSIH- 244 (458)
Q Consensus 169 ~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~~a~~~L~~ls~~- 244 (458)
.+..++..... ....+++++..+...+.. ......+..+..++-.++ --++. +.+..++-.|+++|.+-...
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~---et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKN---ETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhccc---CchHHHHHHHHHHHHHHHHHH
Confidence 34555555542 245677888888887753 333444444222333333 22333 24667888888888762211
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
..|-..-.+.+.++....+.-+.++.+++..|.+.|..+..- .+.-....+.-......+.+++.+.++...|..--..
T Consensus 210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWst 289 (858)
T COG5215 210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWST 289 (858)
T ss_pred HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 111111111123444556677788899999999998777542 2333344444344445567788888888888776655
Q ss_pred hccccc---------------ch--hHHHhhCcHHHHHHHhccC---------CcHH---HHHHHHHHhcCCHHHHHHHH
Q 012677 324 LCILLE---------------NK--RRAVHAGAVRVILRKIMEN---------SLVD---ELLAILAMLSSHQDAIEEIG 374 (458)
Q Consensus 324 L~~~~~---------------~~--~~i~~~g~v~~Lv~ll~~~---------~~~~---~a~~~L~~La~~~~~~~~i~ 374 (458)
+|...- |. ....-++++|.|+.||... .... .|+.....++.+. |
T Consensus 290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~-----i- 363 (858)
T COG5215 290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK-----I- 363 (858)
T ss_pred HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH-----h-
Confidence 554321 00 0111246899999999641 1222 2444444443322 2
Q ss_pred hcCCHHHHHHHHh---hcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 375 ELGAIPCLLRIIR---ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 375 ~~g~i~~Lv~ll~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+.+++.++. .+++-.-++.|+.++..+-.++...+..-+. ..++|.+..++.+.+--++..++|.+..++.+
T Consensus 364 ----~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 364 ----MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred ----HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 233333332 1345777899999999988877544333332 56788899988877778999999999998876
Q ss_pred Hh
Q 012677 452 AL 453 (458)
Q Consensus 452 ~~ 453 (458)
-.
T Consensus 439 va 440 (858)
T COG5215 439 VA 440 (858)
T ss_pred HH
Confidence 43
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.11 Score=55.06 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=80.4
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
+..+.+=+++. ++.++..|+..|..+-. ..+.. .+++++.+++.++++.+|..|+-++.++=.. .+.
T Consensus 94 vNti~kDl~d~----N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~ 160 (757)
T COG5096 94 VNTIQKDLQDP----NEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKD 160 (757)
T ss_pred HHHHHhhccCC----CHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHh
Confidence 45555555554 89999999998865432 23333 3778899999999999999999999988543 345
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+.|.+..+..++.+.+|.+..+|+.+|..+...
T Consensus 161 l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566688999999999999999999999999988654
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.3 Score=44.97 Aligned_cols=141 Identities=12% Similarity=0.081 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCc
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGA 339 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 339 (458)
++++|..++.+..+....+|..++.+-+.-+-++++=.-+.+..++.- .+...+..|+.+|...-.+.++-.+-+....
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 345556667777777777777776654433333332112222222221 3456777777777766665554333222111
Q ss_pred H---------------HHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 340 V---------------RVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 340 v---------------~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+ ..+++.|+++ .++.+|+..++.|......+ .+ +..|+++|... +++.+...+.-+
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~m-----v~eLl~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR-VM-----VKELLEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-HH-----HHHHHHHHHhc-cHHHHHHHHHHH
Confidence 1 2355566666 57888888888775543332 22 45677888766 488888888888
Q ss_pred HHHhcc
Q 012677 403 YNICFT 408 (458)
Q Consensus 403 ~~L~~~ 408 (458)
..++..
T Consensus 410 ~~laEk 415 (866)
T KOG1062|consen 410 AELAEK 415 (866)
T ss_pred HHHHHh
Confidence 887753
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.3 Score=42.44 Aligned_cols=175 Identities=17% Similarity=0.152 Sum_probs=112.8
Q ss_pred ChhHHHHHHHHHHhcccCch----hhhhhhcCCCCHHHHHHHHhcCC-------HHHHHHHHHHHHHhhccCcc--hhHh
Q 012677 227 DPGLLEDLITTILNLSIHDE----NKRLVAENPLAIPLLIDSVRTGT-------IETRRNAAAALFSLSALDSN--KLII 293 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~~i~~Lv~lL~~~~-------~~~~~~a~~~L~~Ls~~~~~--~~~i 293 (458)
+.+.+-.|+.....+.++.+ +|+.+.++- +.+.+-++|.+++ .-.+.-++.+|.-++..++- .+.+
T Consensus 24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAV-Gf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~ 102 (698)
T KOG2611|consen 24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAV-GFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEM 102 (698)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHh-ccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHH
Confidence 44667778888888888776 677788875 6777778887542 33466677778888887754 2334
Q ss_pred hccCchHHHHHHhhcC-ChH------HHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCC-cHHH--HHHHHHHh
Q 012677 294 GKLGAMTPLIDLLEEG-HPL------AMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS-LVDE--LLAILAML 363 (458)
Q Consensus 294 ~~~g~i~~Lv~lL~~~-~~~------~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~-~~~~--a~~~L~~L 363 (458)
+ ..||.|..++..+ +++ +...+-.+|+..+..+.+...++..|+++.+-++-.-++ -... ++.++.-+
T Consensus 103 v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 103 V--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred H--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 3 4599999998764 443 678899999999999889999999999999997765442 2222 33333332
Q ss_pred cC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 364 SS----HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 364 a~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
.. .++.-..+..- |..+..=+...+ ...+-..+.+|..+-.
T Consensus 181 ~~~~~cw~e~~~~flal--i~~va~df~~~~-~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 181 VSKLDCWSETIERFLAL--IAAVARDFAVLH-NALKFELCHLLSAVLS 225 (698)
T ss_pred HHhcccCcCCHHHHHHH--HHHHHHHHHHhh-hHHHHHHHHHHHHHHh
Confidence 22 22222222211 333333333333 5667777888875543
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.095 Score=38.35 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012677 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELG 377 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g 377 (458)
.+.|++++.+++..+.....+-+.++++.++++.... .++-.|.-+|.-++.+.++.+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999888877777789999999999865 688999999999999999999887766
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.5 Score=42.21 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=120.9
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhh-------ccCCCCC-CCChhHHHHHHHHHHhcccCchhhh
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLS-------PLSPGRA-DTDPGLLEDLITTILNLSIHDENKR 249 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~~-~~~~~~~~~a~~~L~~ls~~~~~~~ 249 (458)
.+++.++ |+..|..--...+.....+-.+.|....|++ +|+.+.- +....-..+|+..|..++.+++.+.
T Consensus 58 ~g~~kEq--aL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~ 135 (315)
T COG5209 58 VGNPKEQ--ALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKK 135 (315)
T ss_pred cCCHHHH--HHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchhe
Confidence 4555554 7777776665556554444443444433332 2222111 1122445688889999999999999
Q ss_pred hhhcCCCCHHH-HHHHHhcC-----CHHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 250 LVAENPLAIPL-LIDSVRTG-----TIETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 250 ~i~~~~~~i~~-Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
.+.++. +|. |-..|... -.-.|..+.+++..|..+++. ...+....+||..++++..++.-.+.-|+..+
T Consensus 136 ~Fl~Ah--iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~ 213 (315)
T COG5209 136 VFLDAH--IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIF 213 (315)
T ss_pred eeeecc--cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999874 442 33444322 356788999999999988753 44556688999999999999887777777777
Q ss_pred HHhcccccchhHHH----hhC----cHHHHHHHh-ccC--CcHHHHHHHHHHhcCCHHHHHHH
Q 012677 322 FSLCILLENKRRAV----HAG----AVRVILRKI-MEN--SLVDELLAILAMLSSHQDAIEEI 373 (458)
Q Consensus 322 ~~L~~~~~~~~~i~----~~g----~v~~Lv~ll-~~~--~~~~~a~~~L~~La~~~~~~~~i 373 (458)
..+-.++.+-.-+. +-- ++..++.-+ +.+ .+.+.++++-..|+..+..|..+
T Consensus 214 qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 214 QKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 77766665433221 112 233333222 222 46777888888888888877766
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.5 Score=51.95 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=148.7
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc-----CchhhhhhhcCC
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI-----HDENKRLVAENP 255 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~-----~~~~~~~i~~~~ 255 (458)
.+.+.+|+..|..++..... +... ..++|-++.++.++ .+.++..|+.+|..+-. ...+...+.+
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~L--DRVlPY~v~l~~Ds----~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-- 506 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKL--DRVLPYFVHLLMDS----EADVRATALETLTELLALVRDIPPSDANIFPE-- 506 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHH--hhhHHHHHHHhcCc----hHHHHHHHHHHHHHHHhhccCCCcccchhhHh--
Confidence 56678888888888864221 1122 36789999999875 88999999988876532 1224444444
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHhhcc------------------CcchhHhh----c------cCchHHH-HHH
Q 012677 256 LAIPLLIDSVRTG-TIETRRNAAAALFSLSAL------------------DSNKLIIG----K------LGAMTPL-IDL 305 (458)
Q Consensus 256 ~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~------------------~~~~~~i~----~------~g~i~~L-v~l 305 (458)
.+.|.|-.++... +.-+|..=+.-|..|+.. +.+-+... + ...|+.+ +.+
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH
Confidence 4888888888773 333443333334333321 11111110 0 0122232 235
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHH--HHHHHHHhcCCHHHHHHHHhcCCHHHHH
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDE--LLAILAMLSSHQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~--a~~~L~~La~~~~~~~~i~~~g~i~~Lv 383 (458)
|.+.++-++..-+..|.-||..-.-.. ...=.++.|+.+|.+.+.+-+ =..-|..+|..-. ..-++++.+|.|.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQ 662 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHH
Confidence 555566677776777777764322110 011256778888887754333 2333333333111 1113455688888
Q ss_pred HHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 384 RIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 384 ~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+-|.++. +-+...|+++|..|+...--+-..++ ..++.+.-++-..+.=+++.++.+|....+..
T Consensus 663 Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~K~~v~---~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 663 QGLTDGE-EAVIVSALGSLSILIKLGLLRKPAVK---DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HhccCcc-hhhHHHHHHHHHHHHHhcccchHHHH---HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 8888765 99999999999999986532211222 24555666677778889999999988776543
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.86 Score=48.05 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
...+-.+.+.|+......+.-++..|+.+|++++..+ ++. ...|-+.++|++.++-+|+.|+-+...+-.-..
T Consensus 102 qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~E-----mar--dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE-----MAR--DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH-----HhH--HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 3444555566655444458889999999999998543 333 377888899999999999999988877765443
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
+...+ .++.-.++|.+.+..+...++..+..+|..
T Consensus 175 ~l~e~----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 175 DLVEH----FVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred hHHHH----hhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 32222 233344555555566666666666666654
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.67 Score=43.68 Aligned_cols=221 Identities=14% Similarity=0.027 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHH
Q 012677 182 SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLL 261 (458)
Q Consensus 182 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~L 261 (458)
-.+.-|+..+.++... ++.|..+-.....-..++..++.+. ++..+|-..+-++..++.++.-...+-+....+--|
T Consensus 164 lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~v--g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 164 LTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYV--GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3566788888888774 5566555432445566777777642 357889999999888887766543333323345556
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHhhccCcchhHh---hccCchHHHHHHhhcC---ChHHHHHHHHHH-------------
Q 012677 262 IDSVRTG-TIETRRNAAAALFSLSALDSNKLII---GKLGAMTPLIDLLEEG---HPLAMKDVASAI------------- 321 (458)
Q Consensus 262 v~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i---~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL------------- 321 (458)
+.+.+.. ...+.+.+++++.|+..- ..+..| .-.|-+.+-|++|..+ +.+.+..--..=
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777664 456778889999998762 223333 3355566667766543 444333221110
Q ss_pred ----H-----Hhcccc---------cchhHHHhh--CcHHHHHHHhccC--C-cHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 322 ----F-----SLCILL---------ENKRRAVHA--GAVRVILRKIMEN--S-LVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 322 ----~-----~L~~~~---------~~~~~i~~~--g~v~~Lv~ll~~~--~-~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
. .|+.++ .|...+.+. ..+..|..++... . ....|+.=|..+.. .|+++..+.+.|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 0 111111 233334443 5778888888755 2 44556666666666 899999999999
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
+=..+.+++.+++ ++++-+|+.++..+-.
T Consensus 400 ~k~~im~L~nh~d-~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 400 VKEIIMNLINHDD-DDVKFEALQALQTCIS 428 (432)
T ss_pred hHHHHHHHhcCCC-chhhHHHHHHHHHHHh
Confidence 9999999999764 9999999999987643
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.84 Score=47.57 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc-cchhHHHh
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL-ENKRRAVH 336 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~i~~ 336 (458)
-+-++-+|++.-+-+|..|+.+|+.+..- +-+.+. -++|.|+.-|.++|+.++..|..+++.|+.-+ .|--.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk--YPeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK--YPEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--- 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh--hhHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc---
Confidence 34477888998899999999999887542 223332 36999999999999999999999999999744 45443
Q ss_pred hCcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhh
Q 012677 337 AGAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~ 388 (458)
..|.+..+|... -+.-+.+.++.+|+- .|.-.+.+ +++|.+++.+
T Consensus 219 --LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~s 267 (877)
T KOG1059|consen 219 --LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMES 267 (877)
T ss_pred --ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHh
Confidence 457778888654 356777778888877 55544433 4555555543
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=1 Score=47.58 Aligned_cols=201 Identities=15% Similarity=0.060 Sum_probs=140.2
Q ss_pred ccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHH-hhccCcchhHhhccCchHHHHHHhhcCC-hHHHHHHHH
Q 012677 242 SIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFS-LSALDSNKLIIGKLGAMTPLIDLLEEGH-PLAMKDVAS 319 (458)
Q Consensus 242 s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~ 319 (458)
+.....+...++. |+...|.++....+...+..+..+|.. ++.. .. .....++++...+.+.. .-..-.++.
T Consensus 491 A~~K~~~~~~Ik~-~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~----~~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKP-GGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GE----RSYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccc-cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CC----chhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 3344456666776 488889999888888888888888872 1111 00 01345666666665432 223346888
Q ss_pred HHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHH-HHh-cCCHHHHHHHHhhcCChhH
Q 012677 320 AIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEE-IGE-LGAIPCLLRIIRESTCERN 394 (458)
Q Consensus 320 aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~-i~~-~g~i~~Lv~ll~~~~~~~~ 394 (458)
+|.||+..++ .|..++..-+++.+-.++.+. ..+..++..+.||..++..-.+ +.+ ...++.....+.. ..+..
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~ 643 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKF 643 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHH
Confidence 9999998665 677788876666666555544 5788899999999998875444 455 3357777777765 44888
Q ss_pred HhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 395 KENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 395 ~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
...+++++..|+....+.+..+.+-..+...++.++.++++.++......+-++-
T Consensus 644 ~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 644 ELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred hhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 8899999998888777665545555567888999999999988888777666643
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.081 Score=41.46 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhh
Q 012677 184 QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVA 252 (458)
Q Consensus 184 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~ 252 (458)
+..-+..|.+++..++.++..+.+ .|+++.+++...-. +.++-+++-|+.+++||+.+.+ |+..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD--~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNID--DHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCC--cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445678899999999999999999 99999999886542 3589999999999999998765 544443
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.62 Score=48.86 Aligned_cols=238 Identities=15% Similarity=0.158 Sum_probs=139.6
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
..+.+|+.+. .|.+.++-.-..+.+.+...|... .+++..++.=..+ .++.++..|+..+..+-..
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d----~np~iR~lAlrtm~~l~v~--- 116 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCED----PNPLIRALALRTMGCLRVD--- 116 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCC----CCHHHHHHHhhceeeEeeh---
Confidence 4555666664 455555556666777776655332 3445555544443 4888888888877655432
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
.+.+ .....|...++.+++.+|..++..+.++ ++.+.......|.++.|-+++.+.++.+..+|+.+|..+...
T Consensus 117 --~i~e--y~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 117 --KITE--YLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES 190 (734)
T ss_pred --HHHH--HHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 2222 2455688999999999999888777776 456677777899999999999988999999999999999876
Q ss_pred ccc-hhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 328 LEN-KRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 328 ~~~-~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+.+ .......-.+..++..+... ..-.-+.+|-.++. ++.....| +..+...|++. +..+...++.++
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec-~EW~qi~IL~~l~~y~p~d~~ea~~i-----~~r~~p~Lqh~-n~avvlsavKv~ 263 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNEC-TEWGQIFILDCLAEYVPKDSREAEDI-----CERLTPRLQHA-NSAVVLSAVKVI 263 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHh-hhhhHHHHHHHHHhcCCCCchhHHHH-----HHHhhhhhccC-CcceEeehHHHH
Confidence 643 11111222333344433332 11112333333433 12122222 34445555544 366666777777
Q ss_pred HHHhccCchhHHHHHHhhhhhHHHHHHhhhCC
Q 012677 403 YNICFTDRTRTREIMEEENANGTLSRLAENGT 434 (458)
Q Consensus 403 ~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 434 (458)
..+...-......+. ....++|+.++.+.+
T Consensus 264 l~~~~~~~~~~~~~~--~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 264 LQLVKYLKQVNELLF--KKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHHHHHHHHHHH--HHhcccceeeecccc
Confidence 776664433111222 233455555554443
|
|
| >COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.0073 Score=53.48 Aligned_cols=48 Identities=23% Similarity=0.590 Sum_probs=37.3
Q ss_pred cccccccc-ccccCCc--cC--C-CcccccHHHHHHHHhcCCCCCC--CCCccCCC
Q 012677 79 EFRCPISG-EIMTDPV--VL--A-NGQTFDRPCIQRWLDEGNRTCP--QTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~-~~~~~p~--~l--~-cgh~fc~~ci~~~~~~~~~~CP--~c~~~l~~ 126 (458)
+-.||+|. +.+-+|- ++ | |=|.+|.+|+.+.|..|.-.|| -|++.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 44799998 4455552 22 5 9999999999999999988999 58776654
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=6.2 Score=41.90 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=90.9
Q ss_pred HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcC------------------
Q 012677 305 LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSS------------------ 365 (458)
Q Consensus 305 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~------------------ 365 (458)
+|.+.++.+...++.+.++|+-..++ .+++.+|+++|++. .++...+..+..++.
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 55677889999999999999865532 24688999999877 566666666666653
Q ss_pred CHHH----H----HHHHhcCCHHHHHHHH----hhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC
Q 012677 366 HQDA----I----EEIGELGAIPCLLRII----RESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 366 ~~~~----~----~~i~~~g~i~~Lv~ll----~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
++.. | ..++.++-|..+++=+ .+++ .++...++.+|...+..... + ..--+..|+.|+.+.
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~s-----v-~~tCL~gLv~Llssh 441 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRIGS-----V-TDTCLNGLVQLLSSH 441 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhCc-----h-hhHHHHHHHHHHhcc
Confidence 1111 1 1223444455555433 3333 45666666666665554322 1 133566788888888
Q ss_pred CHHHHHHHHHHHHHHHhhHhhhh
Q 012677 434 TSRAKRKANGILERLNKAALIVH 456 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~~~~ 456 (458)
+..+...|+..|+.|-...+.+|
T Consensus 442 de~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 442 DELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred cchhHHHHHHHHHHHHhhChHHH
Confidence 88899999999998887777665
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.02 Score=60.35 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=28.5
Q ss_pred CCCcccccccccc-ccCCccC-CCcccccHHHHHHHHh
Q 012677 76 LPYEFRCPISGEI-MTDPVVL-ANGQTFDRPCIQRWLD 111 (458)
Q Consensus 76 ~~~~~~C~ic~~~-~~~p~~l-~cgh~fc~~ci~~~~~ 111 (458)
+...-.|.+|... +..|..+ ||||.|++.|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4556679999864 4567665 9999999999998865
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.1 Score=46.66 Aligned_cols=254 Identities=18% Similarity=0.227 Sum_probs=153.0
Q ss_pred HHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh
Q 012677 187 AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR 266 (458)
Q Consensus 187 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~ 266 (458)
.-..|..+.+.+.+|...+.+ +.++..++.++-+ .+-+...+.++..|-..++.. + .. .-+-.+|..|+
T Consensus 662 gwDcLisllKnnteNqklFre-anGvklilpflin------dehRSslLrivscLitvdpkq--v-hh-qelmalVdtLk 730 (2799)
T KOG1788|consen 662 GWDCLISLLKNNTENQKLFRE-ANGVKLILPFLIN------DEHRSSLLRIVSCLITVDPKQ--V-HH-QELMALVDTLK 730 (2799)
T ss_pred hHHHHHHHHhccchhhHHHHh-hcCceEEEEeeec------hHHHHHHHHHHHHHhccCccc--c-cH-HHHHHHHHHHH
Confidence 345677788889999999999 8999888888843 233444445554444333311 1 11 13445777777
Q ss_pred cCC------------HHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhc----------CChHHHHHHHHHHHH
Q 012677 267 TGT------------IETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEE----------GHPLAMKDVASAIFS 323 (458)
Q Consensus 267 ~~~------------~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~aL~~ 323 (458)
++- ........+++..+.... ..+...+++|++..|...|-. ++.-+-..-...|+.
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFr 810 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFR 810 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHH
Confidence 742 233455556666665333 456677889999988887732 122222223333332
Q ss_pred h-----cccccchhHH-------------HhhC---------cHHHHHHHhc----cCCcHH--HHHHHHHHhcC-----
Q 012677 324 L-----CILLENKRRA-------------VHAG---------AVRVILRKIM----ENSLVD--ELLAILAMLSS----- 365 (458)
Q Consensus 324 L-----~~~~~~~~~i-------------~~~g---------~v~~Lv~ll~----~~~~~~--~a~~~L~~La~----- 365 (458)
+ +.+..|+..+ .+.| +|..|.++-- .+.+.. .|+.-+..+-.
T Consensus 811 lfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifav 890 (2799)
T KOG1788|consen 811 LFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAV 890 (2799)
T ss_pred HHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeee
Confidence 2 3334455432 1223 2222222211 112221 13333332211
Q ss_pred -CH-----HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh---hhCCHH
Q 012677 366 -HQ-----DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA---ENGTSR 436 (458)
Q Consensus 366 -~~-----~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll---~~~~~~ 436 (458)
.| ..++.|..+|++..|++.+-.. .++.|..-+..|..++..++..+ ......|-+..|.+++ .+|+..
T Consensus 891 ntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfna-elltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 891 NTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNA-ELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred ccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCch-hhhhcccHHHHHHHHhhhhhcCCch
Confidence 11 2378889999999999887743 59999999999999999888764 6777789999998876 467777
Q ss_pred HHHHHHHHHHHHHhhHh
Q 012677 437 AKRKANGILERLNKAAL 453 (458)
Q Consensus 437 ~~~~A~~~L~~l~~~~~ 453 (458)
.-.+|..++..|+.+..
T Consensus 969 fLshalkIvemLgayrl 985 (2799)
T KOG1788|consen 969 FLSHALKIVEMLGAYRL 985 (2799)
T ss_pred HhhccHHHHHHHhhccC
Confidence 77888888888776543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.032 Score=58.54 Aligned_cols=43 Identities=19% Similarity=0.494 Sum_probs=35.4
Q ss_pred CccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 78 YEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
..-.|..|.-.+.=|++- .|||.||+.|+. .+...||.|+...
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhh
Confidence 335799999999999765 899999999998 3567899998733
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.39 Score=44.43 Aligned_cols=97 Identities=11% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHH
Q 012677 312 LAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRII 386 (458)
Q Consensus 312 ~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll 386 (458)
.....|+.+|..++. +++.+..+.+..++..|+++|... .++..++.+|..+.. ++.|.+.+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345678899998886 556777788899999999999532 677778888777655 899999999999999999999
Q ss_pred hhc-CChhHHhHHHHHHHHHhcc
Q 012677 387 RES-TCERNKENCAAILYNICFT 408 (458)
Q Consensus 387 ~~~-~~~~~~~~a~~~L~~L~~~ 408 (458)
++. .+.+++-.++..|+-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 853 3578888899888876553
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.19 Score=36.73 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhh
Q 012677 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENA 422 (458)
Q Consensus 353 ~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~ 422 (458)
.+.|++++.++++++.+...+-+.+.++.++++...++...++--|..+|.-++...+.. +++.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~--~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGA--EILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHH--HHHHHcCC
Confidence 467999999999999999999989999999999998777899999999999999877553 66665554
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.013 Score=59.31 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=33.3
Q ss_pred CCCccccccccccc----cCCccCCCcccccHHHHHHHHhcCCCCCC
Q 012677 76 LPYEFRCPISGEIM----TDPVVLANGQTFDRPCIQRWLDEGNRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~----~~p~~l~cgh~fc~~ci~~~~~~~~~~CP 118 (458)
+.+-+.|+||...| ..||.+-|||+.|+.|++...+. +||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 55667899997766 46999999999999999988864 577
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.011 Score=43.55 Aligned_cols=63 Identities=24% Similarity=0.433 Sum_probs=45.7
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|+..+..+.+.+. +. -+..|++|..+++..+|.+.+++....++||. .++..|+.|.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~--~Lk~~I~~~~ 68 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNR--ALKSAIEEWC 68 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-H--HHHHHHHHHH
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECH--HHHHHHHHHH
Confidence 3579999999988766554 33 48999999999888999999888888888875 7888888773
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.49 E-value=5.7 Score=43.16 Aligned_cols=243 Identities=16% Similarity=0.114 Sum_probs=149.9
Q ss_pred hhhccCChHHHhhccCCCC-CCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHh----cCC----HHHHHH
Q 012677 205 FGESTDAIPLLLSPLSPGR-ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVR----TGT----IETRRN 275 (458)
Q Consensus 205 i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~----~~~----~~~~~~ 275 (458)
+.+ .|++..|+.++.+-. ...+.......+..|..+++-..||..+... ++++.|+..|. .++ .++-+.
T Consensus 113 ~~~-~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 113 LAE-CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred hhc-CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHH
Confidence 445 899999999887531 1234567778888999999999999999997 49998988774 333 455555
Q ss_pred HHHHHHHhhccCc---chhHh--hc--------cCchHHHHHHhhcC----ChHHHHHHHHHHHHhcccccchhHH-Hhh
Q 012677 276 AAAALFSLSALDS---NKLII--GK--------LGAMTPLIDLLEEG----HPLAMKDVASAIFSLCILLENKRRA-VHA 337 (458)
Q Consensus 276 a~~~L~~Ls~~~~---~~~~i--~~--------~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~i-~~~ 337 (458)
...++-.|..... ..... .. ..-+..++..+.++ ++.+....+++|-+|+..++..... ++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 5555544433211 11110 11 11255666666543 6788888999999999887765542 221
Q ss_pred CcHHHHHHHhc-c-C--CcHHHHHHHHHHhcC----C---HHHHHHHHhcCCHHHHHHHHhhcC-------ChhH-----
Q 012677 338 GAVRVILRKIM-E-N--SLVDELLAILAMLSS----H---QDAIEEIGELGAIPCLLRIIREST-------CERN----- 394 (458)
Q Consensus 338 g~v~~Lv~ll~-~-~--~~~~~a~~~L~~La~----~---~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~----- 394 (458)
+.+.+++=. + . .-....+..++.++. + ..-|+.|++.|.+...+++|...- +++-
T Consensus 271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~ 348 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS 348 (802)
T ss_pred --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence 111111111 1 1 111223445555544 2 346899999999999998886421 2222
Q ss_pred ---HhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHhhHh
Q 012677 395 ---KENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 395 ---~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~ 453 (458)
-..++..|.-|+.+....+.. +. ...++.+..|-+.. +..+-..|-.+|..|+....
T Consensus 349 ~psLp~iL~lL~GLa~gh~~tQ~~-~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 349 RPSLPYILRLLRGLARGHEPTQLL-IA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred CCcHHHHHHHHHHHHhcCHHHHHH-HH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 335888999999887755433 33 56777777776543 44577777777777776443
|
|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.049 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCCccccccccccccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 75 GLPYEFRCPISGEIMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.....|.|||..-.|.+-. ..+|||.|-...+.+.- ...|++|+......+.
T Consensus 107 ~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred cccceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 3467899999999997743 34899999988887654 3479999999987653
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.24 Score=38.69 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=49.7
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.+++++..+.+.+ .+++..|+.+|+|++....+.. +..=....+.|.+++.+.+++++..|..+-+.|
T Consensus 28 Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~--l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEI--LPYFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4788888888664 9999999999999998765432 111134667778888888888887776555443
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.3 Score=42.93 Aligned_cols=200 Identities=9% Similarity=0.061 Sum_probs=139.8
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hh-Hhhc--cCchHHHHHHhhc--CChHHHHHHHHHHHH
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KL-IIGK--LGAMTPLIDLLEE--GHPLAMKDVASAIFS 323 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~-~i~~--~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~ 323 (458)
.+... +.+..|+..|..-+-+.|..++.+..++-....+ +. ..++ ..--|.++..|-. +++++.-.+...|..
T Consensus 71 Ei~~~-dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRS-DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHH-THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHh-CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 33344 4888899999999999999999999988765422 22 1111 1111233333323 267788888888999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc-CCHHHHHHHHhcC---CHHHHHHHHhhcCChhHHhH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS-SHQDAIEEIGELG---AIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La-~~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~ 397 (458)
...++.....+.....+..+.+.+..+ ++...|..++..|- .++..-..+...+ ....+..+|.+ ++--++.+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQ 228 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehh
Confidence 998888777888888899999999877 78888999999864 4887777776665 35666778875 46999999
Q ss_pred HHHHHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 398 CAAILYNICFTDRTR--TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 398 a~~~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
++..|..|-....+. +.+.+....-+..+..|+.+.+..++-.|-.+.+.+-..
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999998766542 223444455667788888999999999998888766544
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.46 Score=47.88 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=110.8
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCc------HHHHHHHHHHhcCCHHHHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL------VDELLAILAMLSSHQDAIE 371 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~------~~~a~~~L~~La~~~~~~~ 371 (458)
....+..++.+++...+..|..-|..++.+......+++..++..|.+++.++.. ...++.++..|-.+.-.-=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4456778888998888888999999999999999999999999999999998832 2334444444432211000
Q ss_pred HHHhcCCHHHHHHHHhh-cCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 372 EIGELGAIPCLLRIIRE-STCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
..+...+|...+.++.- -.+..+-..|+..|.++..++... ...+.+.--++.|+..++.++..++.+|..+|..+-.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~-~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTL-RQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHH-HHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 00111223333333321 123677889999999999888643 4667778888999999999999999999999988877
Q ss_pred hHhh
Q 012677 451 AALI 454 (458)
Q Consensus 451 ~~~~ 454 (458)
.++.
T Consensus 243 ~a~~ 246 (713)
T KOG2999|consen 243 KAPD 246 (713)
T ss_pred hCCh
Confidence 6654
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.048 Score=49.37 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=38.0
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCCCCcc
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQTRQV 123 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~c~~~ 123 (458)
+++|||......+|++- .|||.|.|..|..++... ...||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 67899999999999886 699999999999999742 3479996655
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.19 Score=40.50 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=57.7
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.+..|+++|..+.++.+..-|+.=|..++...+. -+.++...|+-..+.+|+.+.++.++..|..+++.+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4889999996555577777888888889987765 4688889999999999999999999999999998764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.1 Score=47.09 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCC-------HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhH
Q 012677 352 LVDELLAILAMLSSHQDAIEEIGELGA-------IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANG 424 (458)
Q Consensus 352 ~~~~a~~~L~~La~~~~~~~~i~~~g~-------i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~ 424 (458)
.+.-|+.+|+.|+-.+.|-..++..+- +..|++++....+...+|.|+.+|.+|+..++...+.+..+.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 477789999998888888777777663 4556666665566899999999999999999877777777889999
Q ss_pred HHHHHhhhCCHHH
Q 012677 425 TLSRLAENGTSRA 437 (458)
Q Consensus 425 ~L~~ll~~~~~~~ 437 (458)
.|+.++.++...+
T Consensus 220 ~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 220 HLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998764443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.041 Score=37.05 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred cccccccccccCCccC-CCccc--ccHHHHHHHH-hcCCCCCCCCCcc
Q 012677 80 FRCPISGEIMTDPVVL-ANGQT--FDRPCIQRWL-DEGNRTCPQTRQV 123 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l-~cgh~--fc~~ci~~~~-~~~~~~CP~c~~~ 123 (458)
+.|||+...|.-|+.- .|.|. |+..-+.+.. ..+.-.||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5799999999999986 69996 5554433333 3334579999864
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.039 Score=44.43 Aligned_cols=72 Identities=22% Similarity=0.164 Sum_probs=58.1
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 285 (458)
.+..|+.+|..+ .|+.+...|+.-|+.++.+-++.+.+++..|+-..++.++.+++++++..|..++..|..
T Consensus 44 llk~L~~lL~~s---~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKS---DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SH---HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC---CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 577888888553 378888899999999998888777777766799999999999999999999999877643
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3002 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.047 Score=51.69 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=46.0
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQW 142 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 142 (458)
..+-+.||||.+.+.-|+.= +-||..|..|=.+. ...||+|+.++.. +.+..+.+.++.-
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhc
Confidence 45667899999999999653 57999999997532 4579999999972 3667777776654
|
|
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.043 Score=50.89 Aligned_cols=43 Identities=37% Similarity=0.716 Sum_probs=36.2
Q ss_pred cccccccccccc----CCccCCCcccccHHHHHHHHhcCCCCCCCCCc
Q 012677 79 EFRCPISGEIMT----DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQ 122 (458)
Q Consensus 79 ~~~C~ic~~~~~----~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~ 122 (458)
++.||||.+.+. +|..++|||+.+..|+......+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 445999998664 57778999999999999998876 89999977
|
|
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.031 Score=57.87 Aligned_cols=65 Identities=17% Similarity=0.400 Sum_probs=49.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
...||||.....+|+.+.|-|.||..|+...|.. +...||+|+........+-.....++++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l 87 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESL 87 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence 4569999999999999999999999998776542 3458999998777655544555566666554
|
|
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.041 Score=50.94 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=38.9
Q ss_pred CCCCccccccccccccC---CccCCCcccccHHHHHHHHhcC--CCCCCCCCcc
Q 012677 75 GLPYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQV 123 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~ 123 (458)
....-|+||+-.+.-.+ |+.+.|||..-...+.+.-+.| .+.||.|-..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 35667999998887654 7889999999999998877655 3689999543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.11 Score=31.01 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=25.0
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 299 MTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 299 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.07 Score=51.47 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.4
Q ss_pred CccccccccccccC--C-ccCCCcccccHHHHHHHHhc----C---CCCCCCCCcc
Q 012677 78 YEFRCPISGEIMTD--P-VVLANGQTFDRPCIQRWLDE----G---NRTCPQTRQV 123 (458)
Q Consensus 78 ~~~~C~ic~~~~~~--p-~~l~cgh~fc~~ci~~~~~~----~---~~~CP~c~~~ 123 (458)
.-|.|.||++.... . +.+||+|.||++|...|+.. + .-.||.++.+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 35779999976643 2 45799999999999999862 2 2268776543
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.4 Score=42.33 Aligned_cols=114 Identities=21% Similarity=0.205 Sum_probs=79.8
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhC-chhhhhhhhccCChHHHhhccCCC-----CCCCChhHHHHHHHHHHhcc
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRM-PLFRALFGESTDAIPLLLSPLSPG-----RADTDPGLLEDLITTILNLS 242 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~~~~~a~~~L~~ls 242 (458)
....+|+.+.+..... ..+..|....+.. ...-..+.+ .||+..|+++|... ....+...+...+.+|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~-~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS-KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH-HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH-HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4455777774332221 4455555433333 344556667 79999999988531 11235678888999999999
Q ss_pred cCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012677 243 IHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLS 284 (458)
Q Consensus 243 ~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 284 (458)
.+......+....+++..|+..|.+++..++..++.+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888888889888889999999999999999999999998876
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.27 Score=42.19 Aligned_cols=143 Identities=17% Similarity=0.111 Sum_probs=93.9
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHH
Q 012677 258 IPLLIDSVRT--GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRA 334 (458)
Q Consensus 258 i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i 334 (458)
+..++..|.. .+.++|..+.-++..+- +..++.. ..-.-+.+-.++..++.+....+..+|..|--... ....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445555553 46788888888887772 3223332 22233344445555555577778888888776544 44555
Q ss_pred -HhhCcHHHHHHHhc--cC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChh-HHhHHHHHHHH
Q 012677 335 -VHAGAVRVILRKIM--EN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCER-NKENCAAILYN 404 (458)
Q Consensus 335 -~~~g~v~~Lv~ll~--~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~a~~~L~~ 404 (458)
...|.++.++.++. .. ..+..++.+|..=|.+...|..|.+.| ++-|-++++.+.++. ++..|+-.|.-
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 45799999999998 33 467778888877777888888888776 888888886555455 67777766653
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO) | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.086 Score=34.24 Aligned_cols=39 Identities=18% Similarity=0.477 Sum_probs=23.4
Q ss_pred cccccccccCCccC---CCcccccHHHHHHHHhcCCC-CCCCC
Q 012677 82 CPISGEIMTDPVVL---ANGQTFDRPCIQRWLDEGNR-TCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~~~~-~CP~c 120 (458)
|.+|.++...-+.= .|+-.++..|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888888776654 39999999999999985443 59987
|
; PDB: 3NW0_A 2CT0_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.15 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSA 285 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 285 (458)
++|.++++++++++++|..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=5.3 Score=40.09 Aligned_cols=242 Identities=13% Similarity=0.028 Sum_probs=132.1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhccC
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSALD 287 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~ 287 (458)
.|....++..+....++.+..++..|+..|.|.+...+.+..-...- .+..++.-| +..+.++.-.+...|..+...-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 45555555444433334577889999999999998854333222221 455565544 4447888888888887765433
Q ss_pred cchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc--hhHHHh--hCcHHHHHHHhccC-CcHHHHHHHHH
Q 012677 288 SNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN--KRRAVH--AGAVRVILRKIMEN-SLVDELLAILA 361 (458)
Q Consensus 288 ~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~--~~~i~~--~g~v~~Lv~ll~~~-~~~~~a~~~L~ 361 (458)
.+....-- ..+.-.+..++.+.+++.+.+|..+...|+..... +.-..+ .+...+|+-.+.++ .....|+....
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 22221100 22344566788888999999999998888865443 333343 13344444455665 44566777776
Q ss_pred HhcCCHHHHHHHH---h---cCCH------------------HHHHHHHh-------hcCChhHHhHHHHHHHHHhccCc
Q 012677 362 MLSSHQDAIEEIG---E---LGAI------------------PCLLRIIR-------ESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 362 ~La~~~~~~~~i~---~---~g~i------------------~~Lv~ll~-------~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
..|...-.+++.. . .+-. +.+..++. ++.-+.+++.+...-.+....-.
T Consensus 412 ~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 412 RTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred HhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 6665333333221 1 1100 11111111 11224555555555555544333
Q ss_pred hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 411 TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 411 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
..+-......-....+..+.+...+++++.|..++..+.+.
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 22111111122333455556677889999999999888753
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.69 Score=40.77 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=77.3
Q ss_pred CcHHHHHHHhccCCcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhc--------CChhHHhHHHHHHHHHhc
Q 012677 338 GAVRVILRKIMENSLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRES--------TCERNKENCAAILYNICF 407 (458)
Q Consensus 338 g~v~~Lv~ll~~~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~--------~~~~~~~~a~~~L~~L~~ 407 (458)
+....+++.+.+.......+.-|...-. ...=-+.|++.||+..|+++|..- ........++.+|..|..
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 4556677777666444333333332222 234467788899999999988631 224678889999999998
Q ss_pred cCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 408 TDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 408 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
...+ ...++...+.+..|+..+.+.+..++..|..+|..+|
T Consensus 146 ~~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7765 4577878899999999999999999999999999887
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=93.20 E-value=4.2 Score=39.16 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhc-CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc---CcchhHhhccCchHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAE-NPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL---DSNKLIIGKLGAMTPL 302 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~~~g~i~~L 302 (458)
....++.++..+.++-.+.-....+.. ...++..+.+.++.|..+-+..|+.++.-|+.. .+....+.+ ...|.|
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L 134 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVL 134 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHH
Confidence 356677777777665433322222211 112566678888888776677777777666544 233444444 357788
Q ss_pred HHHhhcC--ChHHHHHHHHHHHHhcccccc-hhHHHh-hCcHHHHHH--Hhc-cC-----------CcHHHHHHHHHHhc
Q 012677 303 IDLLEEG--HPLAMKDVASAIFSLCILLEN-KRRAVH-AGAVRVILR--KIM-EN-----------SLVDELLAILAMLS 364 (458)
Q Consensus 303 v~lL~~~--~~~~~~~a~~aL~~L~~~~~~-~~~i~~-~g~v~~Lv~--ll~-~~-----------~~~~~a~~~L~~La 364 (458)
.+++.++ .+.++..++.+|.-++..... -..+.+ ...+..+.. .+. ++ .+...|+..-.-|.
T Consensus 135 ~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl 214 (309)
T PF05004_consen 135 KRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL 214 (309)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence 8888776 445666666666655442211 111110 012221111 111 11 24555555555554
Q ss_pred C-CHHH-HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 365 S-HQDA-IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 365 ~-~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
. .+.. ..... ...++.|+.+|.+. +..+|..|-.+|+-|..
T Consensus 215 t~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 215 TTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred hcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 4 3332 22222 34589999999965 59999988888876643
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.19 E-value=7.7 Score=39.80 Aligned_cols=107 Identities=16% Similarity=0.066 Sum_probs=63.0
Q ss_pred hhhhhHHhhcCCc--HHHHH---HHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 169 HLNSLLEKMSSSL--SDQKE---AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 169 ~l~~Lv~~l~~~~--~~~~~---a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
++-.+++.+.++. ..+.. .++.+..+..++++.+..+ .|.|-..|++. -.-+.-.++.++..++.
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~------rpfL~~wls~k----~emV~lE~Ar~v~~~~~ 293 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL------RPFLNSWLSDK----FEMVFLEAARAVCALSE 293 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH------HHHHHHHhcCc----chhhhHHHHHHHHHHHH
Confidence 4555666665443 22322 2334444555555444332 23444445442 34566667777766664
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.. ....+.+. .+..|-.+|+++....|-.|.++|..|+...+
T Consensus 294 ~n-v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 294 EN-VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred hc-cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 33 23344443 66777788889999999999999999987543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=93.09 E-value=5.3 Score=38.25 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=103.5
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chh-------Hhhcc
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKL-------IIGKL 296 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~-------~i~~~ 296 (458)
.++.+++.|+..|+-++.-+. .++.. .++.+...++.++.+++..|+.++..+..... .-. .....
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~---~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~ 113 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDK---ELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK 113 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhCh---HHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence 388999999999998886654 33332 57778888888899999999999988865331 111 12234
Q ss_pred CchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCC-----cHHHHHHHHH-HhcC-CHHH
Q 012677 297 GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS-----LVDELLAILA-MLSS-HQDA 369 (458)
Q Consensus 297 g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~-----~~~~a~~~L~-~La~-~~~~ 369 (458)
..++.+...+.+.+++++..|+..+..|-..+-... ...++..|+-+-.++. -...++.... ..|. ++.+
T Consensus 114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 577788888888899999999999999876654333 2345566665555551 2334444444 3455 5556
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 012677 370 IEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~ 388 (458)
+..+ ..+.++.+-.+...
T Consensus 191 Q~~l-~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 191 QERL-AEAFLPTLRTLSNA 208 (298)
T ss_pred HHHH-HHHHHHHHHHHHhC
Confidence 5444 45567887777764
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=93.08 E-value=5.3 Score=39.39 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=135.1
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHH-HHhhccCcc
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAAL-FSLSALDSN 289 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L-~~Ls~~~~~ 289 (458)
|.-+++=|.++ ....++..++--|..-+.+++.+..+...| .+..+++.+.. ++..+...++.++ +-|+.+..+
T Consensus 23 v~ylld~l~~~---~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g-~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 23 VEYLLDGLESS---SSSSVRRSSLLELASKCADPQFRRQFRAHG-LVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHhhcccC---CCccHHHHHHHHHHHHhCCHHHHHHHHHcC-cHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 66666666632 356788888888888888888999998885 88889988844 4433444444444 334443333
Q ss_pred hhHhhccCchHHHHHHhh--c-----C-------------------------------------ChHHHHHHHHHHHHhc
Q 012677 290 KLIIGKLGAMTPLIDLLE--E-----G-------------------------------------HPLAMKDVASAIFSLC 325 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~--~-----~-------------------------------------~~~~~~~a~~aL~~L~ 325 (458)
-..+-+.+....++.++. . . ...-+.-|+.+|-.++
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~ 178 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLV 178 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHH
Confidence 333333444444455554 0 0 0111222333444442
Q ss_pred --------c-------cccchhHHHhhCcHHHHHHHhcc----C--------------CcHHHHHHHHHHhcC-CHHHHH
Q 012677 326 --------I-------LLENKRRAVHAGAVRVILRKIME----N--------------SLVDELLAILAMLSS-HQDAIE 371 (458)
Q Consensus 326 --------~-------~~~~~~~i~~~g~v~~Lv~ll~~----~--------------~~~~~a~~~L~~La~-~~~~~~ 371 (458)
. .+-.+..+...|++..++.++.+ . .....++.+|.+.+. +++++.
T Consensus 179 ~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~ 258 (361)
T PF07814_consen 179 RSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQS 258 (361)
T ss_pred HHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchH
Confidence 0 01134446667899999999862 1 134668899988876 667777
Q ss_pred HHHhc--CCHHHH-HHHHhhc--CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh-------h-------h
Q 012677 372 EIGEL--GAIPCL-LRIIRES--TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA-------E-------N 432 (458)
Q Consensus 372 ~i~~~--g~i~~L-v~ll~~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll-------~-------~ 432 (458)
.+... +.++.+ ..++... ........+++++.||+.+++..+..+.. .+....+..+. . .
T Consensus 259 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s-~~l~~~~~~i~~~~~~~~~~~~~~~~~ 337 (361)
T PF07814_consen 259 YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS-PKLGQQLGLIVTSFFCVLSLPNYVPEE 337 (361)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh-hHhccchHHHHHhhccccccccccccc
Confidence 77553 333333 3333321 12444678999999999988654433332 22212211111 1 1
Q ss_pred CCHHHHHHHHHHHHHHHhhHhh
Q 012677 433 GTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 433 ~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
..-++.--+.++|-||+++.+.
T Consensus 338 ~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 338 SSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred ccchHHHHHHHhHHHheeeCcc
Confidence 1235677788888888877654
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.4 Score=45.27 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=96.3
Q ss_pred chHHHHHHhhcCChHHHHHHHHHHHHhcccccchhH---HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC---CHHH
Q 012677 298 AMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRR---AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS---HQDA 369 (458)
Q Consensus 298 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~---~~~~ 369 (458)
.|..++.+|++..+.+++.|+.....|+..-.++.. +...|.| |.+-|.+. ++.-..+.+++.+.+ ....
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 455667788899999999999998888654443332 2223332 34444433 344444444444433 2211
Q ss_pred HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 370 IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 370 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
+.-+ .|.+|.|.-+|++.+ .+++.+.+..+..||..++... ...+=.-.---|++++.+.+..+++.|...+..++
T Consensus 683 qpPi--~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi-~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPI--SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYI-GVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred CCch--hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 2222 478999999999766 9999999999999999887532 11110112223667778888999999999888887
Q ss_pred hhH
Q 012677 450 KAA 452 (458)
Q Consensus 450 ~~~ 452 (458)
+.-
T Consensus 759 ~ai 761 (975)
T COG5181 759 RAI 761 (975)
T ss_pred hhc
Confidence 653
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=92.92 E-value=5.7 Score=39.40 Aligned_cols=127 Identities=9% Similarity=0.142 Sum_probs=94.9
Q ss_pred hhhcCCCCHHHHHHHHhcC---CHHHHHHHHHHHHHhhccCcchh-HhhccCchHHHHHHhh-cC---ChHHHHHHHHHH
Q 012677 250 LVAENPLAIPLLIDSVRTG---TIETRRNAAAALFSLSALDSNKL-IIGKLGAMTPLIDLLE-EG---HPLAMKDVASAI 321 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~lL~-~~---~~~~~~~a~~aL 321 (458)
.+++.+.....|..++++. -..+-..|+.++..+..+++..- .|.+.|.++.++..+. .+ +.++....-.+|
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3445333566666777765 36788899999999988887654 4556999999999887 43 667778888899
Q ss_pred HHhcccccchhHHHhhCcHHHHHHHhccCC---------cHHHHHHHHHHhcC-CHHHHHHHHhc
Q 012677 322 FSLCILLENKRRAVHAGAVRVILRKIMENS---------LVDELLAILAMLSS-HQDAIEEIGEL 376 (458)
Q Consensus 322 ~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~---------~~~~a~~~L~~La~-~~~~~~~i~~~ 376 (458)
..||.+..+...+.+.+.++.+++++.+++ .....-..+-.|.+ +|.-|..++++
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999998761 22223344556777 57777777554
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=92.89 E-value=4.5 Score=39.35 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=117.9
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chh-H----HHh--hCcHHHHHHHhccCCcHHHHHHHHHHh
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKR-R----AVH--AGAVRVILRKIMENSLVDELLAILAML 363 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~-~----i~~--~g~v~~Lv~ll~~~~~~~~a~~~L~~L 363 (458)
.+...+.+..|+..|..-+-+.++.+.....++-.... ++. . +.. ..++..|+.--..+++.-.+-.+|+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 45566889999999988899999999999999987653 332 1 222 234555555445558888899999999
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHHHHHhhhCCHHHHHHH
Q 012677 364 SSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTLSRLAENGTSRAKRKA 441 (458)
Q Consensus 364 a~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L~~ll~~~~~~~~~~A 441 (458)
+.++...+.++....+..+.+.++.+ +-++...|..++..|-.....-....+... .+......|+.+++.-+++++
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 99999999999988899999999965 599999999999998776654444555422 355677888999999999999
Q ss_pred HHHHHHHH
Q 012677 442 NGILERLN 449 (458)
Q Consensus 442 ~~~L~~l~ 449 (458)
..+|..+-
T Consensus 230 lkLL~ell 237 (335)
T PF08569_consen 230 LKLLGELL 237 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.13 Score=36.35 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=42.5
Q ss_pred CCCCCCCccCCCCCCccc--HHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHh
Q 012677 115 RTCPQTRQVLSHTVLIPN--HLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEK 176 (458)
Q Consensus 115 ~~CP~c~~~l~~~~~~~n--~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~ 176 (458)
..||+|+..+..+...++ ...+..|.+|..+ +..+|.+.+.+....+.++ ..++..|+.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~--~~l~~~i~~ 62 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPN--LALKSAIQE 62 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeC--HHHHHHHHh
Confidence 369999999988765554 2358889999987 5678988887766666655 356666654
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.1 Score=37.50 Aligned_cols=112 Identities=22% Similarity=0.177 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHH
Q 012677 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIP 259 (458)
Q Consensus 180 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~ 259 (458)
++.+|..++..+..++...+.. .+ ..++.+...|.+. ++.++..|+..|..|...+-.+. .|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve--~~~~~l~~~L~D~----~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE--PYLPNLYKCLRDE----DPLVRKTALLVLSHLILEDMIKV----KGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH--hHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHcCceee----hhhhhH
Confidence 3567888999999999876543 23 5577888888875 89999999999999886543222 232436
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc
Q 012677 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE 308 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 308 (458)
.++.++..++++++..|..++..+.... +...+ ...++.++.-|+.
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKKR-NPNII--YNNFPELISSLNN 112 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhc-cchHH--HHHHHHHHHHHhC
Confidence 6888888999999999999999997752 11222 2235555555543
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.68 Score=49.55 Aligned_cols=182 Identities=14% Similarity=0.049 Sum_probs=113.7
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHH
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--------------NKRLVAENPLAIPLLIDSVRTGTIETRRN 275 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~ 275 (458)
.....|+++|+.. ++-..+..++.-+..+.+ .|..+.. .++|.|++.+...+...+.+
T Consensus 815 ~ia~klld~Ls~~------~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~--~ivP~l~~~~~t~~~~~K~~ 886 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGP------STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC--DIVPILVSKFETAPGSQKHN 886 (1030)
T ss_pred hHHHHHHHhcCCc------cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH--hhHHHHHHHhccCCccchhH
Confidence 4456788888753 222333444433333322 2333333 38899999888767777777
Q ss_pred HHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---
Q 012677 276 AAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--- 350 (458)
Q Consensus 276 a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--- 350 (458)
=..+|.++-.+- .+..+.. ....|.|++.|+-+|..++..++.++.-+....+.-..---.-.+|.++.+=.+.
T Consensus 887 yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 887 YLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred HHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcc
Confidence 777887776533 3344444 6678888899988999999999998887765443222211123666666665554
Q ss_pred --CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 351 --SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 351 --~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
.+++.|+..|..|.. .|-..-.--+-.++..|.+.|.+.. ..+++.|+.+
T Consensus 966 ~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~t 1018 (1030)
T KOG1967|consen 966 MMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDT 1018 (1030)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHH
Confidence 257778888888887 4433322233345777888887654 6677777654
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.63 E-value=18 Score=40.05 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=128.8
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..|.+.++ .+..+|-.|++-+..++.+.| ..+++ .+|...++++... ++...-..|+-+|..|+...-.
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~---e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPA---EDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhcCCc
Confidence 3444444444 456778889999999998877 22333 4566667755543 2456666888888888765433
Q ss_pred hhhhhcCCCCHHHHHHHHhcC--------CHHHHHHHHHHHHHhhccCcch--hHhhccCchHHHH-HHhhcCChHHHHH
Q 012677 248 KRLVAENPLAIPLLIDSVRTG--------TIETRRNAAAALFSLSALDSNK--LIIGKLGAMTPLI-DLLEEGHPLAMKD 316 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~--------~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~Lv-~lL~~~~~~~~~~ 316 (458)
...... .++|.+++-|... ...+|..|+.++..++...... +.+.. .....|+ ..+=+....+|..
T Consensus 414 lps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 414 LPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred chHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHH
Confidence 333333 2777777666432 2568999999998887643221 11111 1122221 2222446678899
Q ss_pred HHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHH-HhcCCHHHHHHHHhcCCHHHHHHH-HhhcCCh
Q 012677 317 VASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILA-MLSSHQDAIEEIGELGAIPCLLRI-IRESTCE 392 (458)
Q Consensus 317 a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~-~La~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~ 392 (458)
|..|+........|..- |++. +.....- ..+.+|-..|. .++..+..++.+.+ .|+.. +.+= +.
T Consensus 491 AsAAlqE~VGR~~n~p~-----Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~ 558 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPH-----GISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DV 558 (1133)
T ss_pred HHHHHHHHhccCCCCCC-----chhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cH
Confidence 99998877665544321 1111 1111100 12333322222 22334444443322 22211 3322 58
Q ss_pred hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCH
Q 012677 393 RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTS 435 (458)
Q Consensus 393 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 435 (458)
.+++.+.++|..|+...+... . .+..++++.-..+++.
T Consensus 559 ~irelaa~aL~~Ls~~~pk~~----a-~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPKYL----A-DYVLPPLLDSTLSKDA 596 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHHhh----c-ccchhhhhhhhcCCCh
Confidence 899999999999887665332 1 3455555555444443
|
|
| >KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.047 Score=49.13 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=38.1
Q ss_pred cccccccccc-cCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 80 FRCPISGEIM-TDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 80 ~~C~ic~~~~-~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
..|-.|+.-- .+|..+ .|+|.||..|...-.. ..||.|++++....+..| +...|..|+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc--cchhHHHHc
Confidence 3477776433 566554 7999999999765433 279999999766555444 433444333
|
|
| >PHA02825 LAP/PHD finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.14 Score=42.91 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=35.4
Q ss_pred CCccccccccccccCCccCCCcc-----cccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQ-----TFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh-----~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
..+..|-||.+... +..-||.. ..|++|+++|+... ...||.|+.+...
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34557999988754 34456543 45999999999753 5689999988754
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.14 Score=50.66 Aligned_cols=176 Identities=12% Similarity=0.012 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhccCcchhHhh-ccCchHHHHHHhhcCChHHHHHHHHHHHHhccc--c--cc-hhHHHhh--CcHHHH
Q 012677 272 TRRNAAAALFSLSALDSNKLIIG-KLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL--L--EN-KRRAVHA--GAVRVI 343 (458)
Q Consensus 272 ~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~--~~-~~~i~~~--g~v~~L 343 (458)
++..|.+++.-+..++-.+...+ -..+...+...+.+..-..++.+++++.|++.- . ++ +..--+. -.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 45555555555555554443333 255666667777666777899999999998641 1 22 2221111 122333
Q ss_pred HHHhcc-----CCcHHHHHHHHHHhcCCHH--H--HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHH
Q 012677 344 LRKIME-----NSLVDELLAILAMLSSHQD--A--IEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTR 414 (458)
Q Consensus 344 v~ll~~-----~~~~~~a~~~L~~La~~~~--~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 414 (458)
++.-.. ..++.++.++|.|+...-+ . --.....|.+..++.-.--....+++-+|+.++.||.++..-...
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 333221 1578889999998876211 1 111122344444443333234589999999999999987653221
Q ss_pred HHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHH
Q 012677 415 EIMEEENANGTLSRLAEN-GTSRAKRKANGILER 447 (458)
Q Consensus 415 ~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~ 447 (458)
..-....+.+.|..|+.+ .+-+++.+|+.+|..
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 222223344556666544 467888888888754
|
|
| >PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.15 Score=36.99 Aligned_cols=48 Identities=27% Similarity=0.467 Sum_probs=23.1
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.-.|-||.+-.- +|.+. .|+.-.|+.|++--.+.++..||.|+.+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 346999998652 34443 5999999999998888899999999977653
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.7 Score=48.70 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=97.8
Q ss_pred cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH-hcccccchhHHHhhCcHHHHHHHhccC-C--cHHHHHHHHHHh
Q 012677 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS-LCILLENKRRAVHAGAVRVILRKIMEN-S--LVDELLAILAML 363 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~Lv~ll~~~-~--~~~~a~~~L~~L 363 (458)
..+...+..|+.+.|+.+.....+..+-.+..+|.. +.. +..+. ..+++++...+... . -.-.++.+|.||
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGERS----YEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 346667889999999999988888888888888872 221 11111 24566666666544 2 245589999999
Q ss_pred cC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHH
Q 012677 364 SS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRK 440 (458)
Q Consensus 364 a~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~ 440 (458)
++ +...|+.+++.-+++.+-.++... ++..|..++..+.||..++---.+.+++....++.....+..........
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99 677888898887777766666644 49999999999999998775333344432344444444444333333333
|
|
| >KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.12 Score=43.74 Aligned_cols=44 Identities=23% Similarity=0.592 Sum_probs=30.5
Q ss_pred cccccccccCCcc-------CCCcccccHHHHHHHHhc-----CC-----CCCCCCCccCC
Q 012677 82 CPISGEIMTDPVV-------LANGQTFDRPCIQRWLDE-----GN-----RTCPQTRQVLS 125 (458)
Q Consensus 82 C~ic~~~~~~p~~-------l~cgh~fc~~ci~~~~~~-----~~-----~~CP~c~~~l~ 125 (458)
|.||..+--|... ..||..|+.-|+..|+.. ++ ..||.|..++.
T Consensus 168 cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 168 CGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 5566544433222 369999999999999973 11 26999988765
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.01 E-value=11 Score=40.20 Aligned_cols=205 Identities=11% Similarity=0.174 Sum_probs=127.0
Q ss_pred HHHhhccCCCCCCCChhHHHHHHH-HHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 213 PLLLSPLSPGRADTDPGLLEDLIT-TILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 213 ~~Lv~lL~~~~~~~~~~~~~~a~~-~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
.-|..+|.+. ....+..|++ +|..++++.+ +. ...|.+|+-..+.|.++++..---|...+..+.+-.
T Consensus 38 ~dL~~lLdSn----kd~~KleAmKRIia~iA~G~d-----vS--~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA 106 (968)
T KOG1060|consen 38 DDLKQLLDSN----KDSLKLEAMKRIIALIAKGKD-----VS--LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA 106 (968)
T ss_pred HHHHHHHhcc----ccHHHHHHHHHHHHHHhcCCc-----HH--HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce
Confidence 3466666663 3344445554 4555566654 22 267889999999999999987777776666665544
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHH
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQD 368 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~ 368 (458)
.+ -|..+=+-|.++++.+|..|+++|..+ |..++..=++-.+-+...+. -++..|+-+|-.|=+ .++
T Consensus 107 LL----SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 107 LL----SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ee----eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 33 355666778889999999999998876 33222221222233344454 367778888888855 677
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHH
Q 012677 369 AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448 (458)
Q Consensus 369 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l 448 (458)
.+.++. ..+-.+|.+ .++.+.-.|+.+...+|-..- .++ ++-...|..++.+.++=-|-.....|...
T Consensus 177 ~k~qL~-----e~I~~LLaD-~splVvgsAv~AF~evCPerl----dLI--HknyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 177 QKDQLE-----EVIKKLLAD-RSPLVVGSAVMAFEEVCPERL----DLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred hHHHHH-----HHHHHHhcC-CCCcchhHHHHHHHHhchhHH----HHh--hHHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 776653 444556664 568999999999988886432 333 33445555665554444444444444444
Q ss_pred Hh
Q 012677 449 NK 450 (458)
Q Consensus 449 ~~ 450 (458)
+|
T Consensus 245 AR 246 (968)
T KOG1060|consen 245 AR 246 (968)
T ss_pred HH
Confidence 43
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.99 E-value=6.5 Score=37.63 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=100.8
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--chhhhhhh---
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--DENKRLVA--- 252 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~--- 252 (458)
+.+...|..|++.|+..+--+... +. ..++.+...++.. +..++..|+.++..+... .+.-....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~~~----a~--~~l~l~~~~~~~~----~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDKEL----AK--EHLPLFLQALQKD----DEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhChHH----HH--HHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 466889999999999888654432 21 3466677777553 789999999999876432 11111111
Q ss_pred ---cCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc----CChHHHHHHHHHHHHhc
Q 012677 253 ---ENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE----GHPLAMKDVASAIFSLC 325 (458)
Q Consensus 253 ---~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~ 325 (458)
....++..+.+.|.+.+.+++..|+..+..|-....... ...++..|+-+-=+ ++...++--...+-..+
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA 184 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 111356677788888899999999999999876552222 13445555443322 23455554445555666
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN 350 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~ 350 (458)
......+..+..+.++.+-.+...+
T Consensus 185 ~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 185 SSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 6666556666777777777776543
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=91.80 E-value=18 Score=39.49 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=128.4
Q ss_pred hhhhhhhHHhhcC--C---cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC----CChhHHHHHHHH
Q 012677 167 RSHLNSLLEKMSS--S---LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD----TDPGLLEDLITT 237 (458)
Q Consensus 167 ~~~l~~Lv~~l~~--~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~----~~~~~~~~a~~~ 237 (458)
.+.+..++..+.+ + .......+..|...+-.-+.||+.+.+ .|+++.|+..|...... ....+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3567777777732 1 222233333444444446899999999 99999999888521111 125677777776
Q ss_pred HHhcccCchh--h---hhhhcCC-------CCHHHHHHHHhcC----CHHHHHHHHHHHHHhhccCcchh-HhhccCchH
Q 012677 238 ILNLSIHDEN--K---RLVAENP-------LAIPLLIDSVRTG----TIETRRNAAAALFSLSALDSNKL-IIGKLGAMT 300 (458)
Q Consensus 238 L~~ls~~~~~--~---~~i~~~~-------~~i~~Lv~lL~~~----~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~g~i~ 300 (458)
+..+...... . ....... ..+..|++.+.+. +..+....+++|-.|+..++.+. .+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 6655433221 0 0001111 1255566666543 67888999999999988765432 22221 22
Q ss_pred HHHHHhh--cC-ChHHHHHHHHHHHHhcc----cc---cchhHHHhhCcHHHHHHHhccC------------------Cc
Q 012677 301 PLIDLLE--EG-HPLAMKDVASAIFSLCI----LL---ENKRRAVHAGAVRVILRKIMEN------------------SL 352 (458)
Q Consensus 301 ~Lv~lL~--~~-~~~~~~~a~~aL~~L~~----~~---~~~~~i~~~g~v~~Lv~ll~~~------------------~~ 352 (458)
+.+++=+ .. .++- ..-+..+..++. +. .-|..+++.|++...+++|... +.
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 2222111 11 1111 122344444332 22 2456689999999999988632 22
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 353 VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 353 ~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
...++.+|..||. ++..+.. +..++++.+-.+=+.+....+-.-|=.+|-.|+.
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3458889999998 4545544 5566674444433333234444445555555555
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.047 Score=59.91 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=40.0
Q ss_pred CCCcccccccccccc-CCccCCCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 76 LPYEFRCPISGEIMT-DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~-~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
....+.|+||.++++ ...+.-|||.+|..|+..|+.. +..||.|....
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhh
Confidence 445678999999999 5666789999999999999985 56799998443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.48 E-value=4.3 Score=37.43 Aligned_cols=61 Identities=11% Similarity=0.315 Sum_probs=40.8
Q ss_pred CcHHHHHHHhccC----CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 338 GAVRVILRKIMEN----SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 338 g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
-+||.|.+.|.+. .++..|+.+|..++.. .+++.|.+++.+.. +-+++.|.-+|..+-..+
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~-~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEE-RVVRESCEVALDMLEYEN 282 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHhc
Confidence 4577777777644 4677788888776542 35777888888543 777777777776654433
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.46 E-value=7.9 Score=42.59 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=120.0
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~ 288 (458)
+++..|+..|++ .|..++=.|++.++.++...+ ..+++. ++..+++++... +...-..|+-+|+.|+.-.-
T Consensus 341 ~vie~Lls~l~d----~dt~VrWSaAKg~grvt~rlp--~~Lad~--vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 341 FVIEHLLSALSD----TDTVVRWSAAKGLGRVTSRLP--PELADQ--VIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHhccC----CcchhhHHHHHHHHHHHccCc--HHHHHH--HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 344444444444 477888888888888877766 444443 666777766544 35556678888888876321
Q ss_pred chhHhhccCchHHHHHHhhc--------CChHHHHHHHHHHHHhcccccc--hhHHHhhCcHHHHHHHhccC--CcHHHH
Q 012677 289 NKLIIGKLGAMTPLIDLLEE--------GHPLAMKDVASAIFSLCILLEN--KRRAVHAGAVRVILRKIMEN--SLVDEL 356 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~aL~~L~~~~~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a 356 (458)
-..... ..++|.++.-|.- ....+|..|+.+.+.++..-+- -..++..=.-..|+..+.|+ ..+..|
T Consensus 413 Llps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 413 LLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred cchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 111111 2245555554421 1345888899888888764432 12233322223344555676 567777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcC--ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC
Q 012677 357 LAILAMLSSHQDAIEEIGELGAIPCLLRIIREST--CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT 434 (458)
Q Consensus 357 ~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 434 (458)
.++|..... +.|-.|.=+.++...+ +-..+.++-..|..--...+.-...+ +-..+.+-+.+.+
T Consensus 492 sAAlqE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd 557 (1133)
T KOG1943|consen 492 SAALQENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWD 557 (1133)
T ss_pred HHHHHHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhccccccc
Confidence 777765543 2222222233333211 13334455444443333232211111 1122233355678
Q ss_pred HHHHHHHHHHHHHHHhhHhh
Q 012677 435 SRAKRKANGILERLNKAALI 454 (458)
Q Consensus 435 ~~~~~~A~~~L~~l~~~~~~ 454 (458)
+.+++.|++.|..|+...+.
T Consensus 558 ~~irelaa~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPK 577 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999998876553
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.39 E-value=12 Score=38.48 Aligned_cols=264 Identities=11% Similarity=0.030 Sum_probs=147.5
Q ss_pred hhhhHHh--hcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhc-ccCch
Q 012677 170 LNSLLEK--MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNL-SIHDE 246 (458)
Q Consensus 170 l~~Lv~~--l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~l-s~~~~ 246 (458)
++.|.+- |++|+..|..|=..|.++.+++ +- ..+..|++.|-+. .+++..+-.|.-+|.|- ..+++
T Consensus 6 f~~l~~n~vLspD~n~rl~aE~ql~~l~~~d--F~-------qf~~ll~qvl~d~--ns~~~~Rm~agl~LKN~l~a~d~ 74 (858)
T COG5215 6 FRCLGKNHVLSPDPNARLRAEAQLLELQSGD--FE-------QFISLLVQVLCDL--NSNDQLRMVAGLILKNSLHANDP 74 (858)
T ss_pred HHHHHhcccCCCCCCccccHHHHHHHhcccc--HH-------HHHHHHHHHHhcc--CCcHHHHHHHHHHHhhhhhcCCH
Confidence 3344444 6777777777777777777542 21 1223333333322 12456666666666653 22222
Q ss_pred hhh-hhhcC---------CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcC-ChHHH
Q 012677 247 NKR-LVAEN---------PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEG-HPLAM 314 (458)
Q Consensus 247 ~~~-~i~~~---------~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~ 314 (458)
.+. ..... ..+-......|.++.+..-..|+.++..++..+-. -.. .|.+..++.....+ ....+
T Consensus 75 ~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp---~~~wp~lm~~mv~nvg~eqp~~~k 151 (858)
T COG5215 75 ELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELP---NSLWPGLMEEMVRNVGDEQPVSGK 151 (858)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCc---cccchHHHHHHHHhccccCchHhH
Confidence 111 11110 00112345567777788888888888888764310 011 45566666666555 44678
Q ss_pred HHHHHHHHHhcccccchhHHHhhC-cHHHHH-HHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcC----CHHHHHHH
Q 012677 315 KDVASAIFSLCILLENKRRAVHAG-AVRVIL-RKIMEN---SLVDELLAILAMLSSHQDAIEEIGELG----AIPCLLRI 385 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~~~~~i~~~g-~v~~Lv-~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g----~i~~Lv~l 385 (458)
..++.++.+.|....-...+...+ ++-.++ ..++.+ .++-.++.+|++= ....|..+..++ .++...+.
T Consensus 152 ~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~ds--l~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 152 CESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDS--LMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred HHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHH--HHHHHHhhcchhhhchhheeeehh
Confidence 899999999998766533333333 333333 333443 2445566666651 123333443333 23444555
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
-+ +.+.+++..|.++|..|..-.-.-....++ ..........+.+.++.+.-+|+..-..+|+.
T Consensus 230 tq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeE 293 (858)
T COG5215 230 TQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEE 293 (858)
T ss_pred cc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 56 456999999999999887755444444444 22334555667788888888888877777754
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=91.33 E-value=2.3 Score=39.96 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCC-HHHHHHHHhc----CCHHHHHHHHHHHHHhhccCcchhHhhc-cC-ch
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLA-IPLLIDSVRT----GTIETRRNAAAALFSLSALDSNKLIIGK-LG-AM 299 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~-i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g-~i 299 (458)
..+-+--++-.++-+..++.....+...++. ...+..++.. .+...+..+++++.|+-.+..++..+.. .+ .|
T Consensus 76 p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i 155 (268)
T PF08324_consen 76 PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSI 155 (268)
T ss_dssp -CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCH
T ss_pred CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchH
Confidence 3455666777777777777665555554323 3444455443 3678889999999999998888888776 33 34
Q ss_pred HHHHHHhhcC----ChHHHHHHHHHHHHhccccc-ch-hHHHhhCcHHHHHHHhc----cCCcHHHHHHHHHHhcCCHHH
Q 012677 300 TPLIDLLEEG----HPLAMKDVASAIFSLCILLE-NK-RRAVHAGAVRVILRKIM----ENSLVDELLAILAMLSSHQDA 369 (458)
Q Consensus 300 ~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~-~~-~~i~~~g~v~~Lv~ll~----~~~~~~~a~~~L~~La~~~~~ 369 (458)
...+..+... +..++..++.+++|++...- .+ ..-.....+..+++.+. +++...+++.+|++|...+..
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 4444433333 67889999999999976432 22 11122235566666432 236788899999999986666
Q ss_pred HHHHHh-cCCHHHHHHHHhhcCChhHHhHH
Q 012677 370 IEEIGE-LGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 370 ~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
.....+ .|+-..+-..-..+..+++++-+
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 236 AKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 666655 34333333333333335555443
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.6 Score=42.45 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=80.7
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch-------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHHH
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE-------------NKRLVAENPLAIPLLIDSVRTGTIETRRNA 276 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~-------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a 276 (458)
.+..|+.+|.+ +++...|+..+.-+..+ ++ +|.++... .+|.|++-.+..+.+.+.+-
T Consensus 272 ~~~~L~~lL~~------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~--~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 272 LLDKLLELLSS------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ--VLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred HHHHHHHHhCC------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH--HHHHHHHHHhhcChhhHHHH
Confidence 45667777764 46666777777766655 22 14444443 67888888888777788888
Q ss_pred HHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 277 AAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 277 ~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
..+|.++..+-+....+-+ ...+|.|++-|+.++.+++..++.+|..+....
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8899988876554444444 668999999998889999999999999987766
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.86 Score=48.79 Aligned_cols=146 Identities=12% Similarity=0.186 Sum_probs=99.8
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
..+|.|+...... +...+..-+.+|.++-.+-+-...+-.-....|.|++.|+-++..+|..+..++.-+......
T Consensus 867 ~ivP~l~~~~~t~----~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 867 DIVPILVSKFETA----PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred hhHHHHHHHhccC----CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 5788888888743 456666777777776655443222222334788888999999999999888888766543322
Q ss_pred hhHhhccCchHHHHHHhhcCC---hHHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHH
Q 012677 290 KLIIGKLGAMTPLIDLLEEGH---PLAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAI 359 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~ 359 (458)
-..---...||.++.+=++.+ ..+|..|+.+|..|.. .+.+.-.-.+..++..|+..|.++ -+++.|..+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 211111346777777665554 5789999999999998 555555556677889999999887 467777654
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.72 E-value=13 Score=39.63 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=135.7
Q ss_pred hhhHHhh-cC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 171 NSLLEKM-SS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 171 ~~Lv~~l-~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
.+.+..| ++ ..-+..+|...+..+...++.- + .-++..|-.+++++ ....+..|..+|-.++...+.+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l---~pavs~Lq~flssp----~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---L---APAVSVLQLFLSSP----KVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---c---chHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHhCCcc
Confidence 3444444 22 3445667887777776543321 1 12566777777765 7788899999998887644422
Q ss_pred h---------hhhcCCC--CHHHHHHHHhcCCHHHHHHHHHHHHHhhc--cCcchhHhhc-------------cCchHHH
Q 012677 249 R---------LVAENPL--AIPLLIDSVRTGTIETRRNAAAALFSLSA--LDSNKLIIGK-------------LGAMTPL 302 (458)
Q Consensus 249 ~---------~i~~~~~--~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~-------------~g~i~~L 302 (458)
. .+-+.+. ...++.-+|+.|+......-..-+.++.. .|+++..+++ .+.+..|
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 1 1111111 12344556777765555544444444432 2233332221 2344445
Q ss_pred HHHhhc-CChHHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCH
Q 012677 303 IDLLEE-GHPLAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS-HQDAIEEIGELGAI 379 (458)
Q Consensus 303 v~lL~~-~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i 379 (458)
-.+|++ |.-+-+.....++..+.. .++.+. -++..|...+.+.....-+..+|..|-. .|. ......-+
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~---a~~Pskyi 468 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPK---APNPSKYI 468 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCC---CCCcchhh
Confidence 555543 344555555555555544 233333 2455566666666666666666665533 110 00011123
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
..+...+.- .+..++..|+.+|..+....+.-. ....-.|.+.+.+.++.+++.|..+|..+..
T Consensus 469 r~iyNRviL-En~ivRaaAv~alaKfg~~~~~l~------~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 469 RFIYNRVIL-ENAIVRAAAVSALAKFGAQDVVLL------PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHhhhhhh-hhhhhHHHHHHHHHHHhcCCCCcc------ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 333333332 247788889999999885544321 1222334445566788899999999988873
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=90.68 E-value=2.5 Score=43.67 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=73.8
Q ss_pred hhhhhhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 165 ASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 165 ~~~~~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.+....++..-+++..+++-|...|..+.+.-|.... .+|..++++..+. |..++..|+..|-.++++
T Consensus 20 ~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDe----d~~iR~~aik~lp~~ck~ 89 (556)
T PF05918_consen 20 QHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDE----DVQIRKQAIKGLPQLCKD 89 (556)
T ss_dssp GGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-S----SHHHHHHHHHHGGGG--T
T ss_pred cCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc----cHHHHHHHHHhHHHHHHh
Confidence 344567778877788888999999999999998887753 5677899999874 899999999999999987
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL 286 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 286 (458)
.. .... ++..|+++|.+.+......+-.+|..|-..
T Consensus 90 ~~~~v~k------vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 90 NPEHVSK------VADVLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp --T-HHH------HHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhH------HHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 43 3333 455688999988777666666677666443
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.66 E-value=7 Score=43.41 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=122.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhh-ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--hhhhhhcCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGE-STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE--NKRLVAENP 255 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~ 255 (458)
++...|..+...|..++.. +.......+ .......|.+-+++ .+...+..++.+|..|-...+ ....+..
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs----~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-- 738 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQS----SSSPAQASRLKCLKRLLKLLSAEHCDLIPK-- 738 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 3567788888888888765 222111111 00122333333333 245666666666665543322 2233322
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhc----cCcchhHhhccCchHHHHHHhhcC--ChHHHHHH--HHHHHHhccc
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSA----LDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDV--ASAIFSLCIL 327 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a--~~aL~~L~~~ 327 (458)
.+|-++-.++..+...+.+|...|..+.. .++..+. ....|...+.++..+ ....+..+ +.++..+...
T Consensus 739 -~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 739 -LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred -HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 34444444566788999999999988873 1111111 112566666666554 33333333 4444444433
Q ss_pred ccchhHHHhh----CcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 328 LENKRRAVHA----GAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 328 ~~~~~~i~~~----g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
..+ +.+. +.+..+...|.+. .++..|+..+..++. .|+..-.--..-.++.+..++++.. ..++...-.
T Consensus 816 ~~~---~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~ 891 (1176)
T KOG1248|consen 816 FKN---ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVRL 891 (1176)
T ss_pred Hhc---cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHH
Confidence 332 2333 3444444455544 688889999988877 5655444444446888888888644 888888888
Q ss_pred HHHHHhccCc
Q 012677 401 ILYNICFTDR 410 (458)
Q Consensus 401 ~L~~L~~~~~ 410 (458)
.|-.|.....
T Consensus 892 LlekLirkfg 901 (1176)
T KOG1248|consen 892 LLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHhC
Confidence 9988887554
|
|
| >KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.49 Score=41.82 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=36.4
Q ss_pred cccccccccc--CCccCCCcccccHHHHHHHHhc-------CCCCCCCCCccCCC
Q 012677 81 RCPISGEIMT--DPVVLANGQTFDRPCIQRWLDE-------GNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~--~p~~l~cgh~fc~~ci~~~~~~-------~~~~CP~c~~~l~~ 126 (458)
.|.+|...+. |-+.+.|=|.|+..|+.+|-.. ....||.|..++-.
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 5999998774 5677899999999999999763 12379999887644
|
|
| >COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.18 Score=47.32 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhc-CCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-GNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~~l~ 125 (458)
.+++..|-||-+-..--..+||||..|..|-.+.-.- ....||.|+..-.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 4567789999988887778999999999996554221 1357999998753
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.71 Score=43.47 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhccC-ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCC-CHHHH
Q 012677 184 QKEAAKELRLLTKRMPLFRALFGESTD-AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL-AIPLL 261 (458)
Q Consensus 184 ~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-~i~~L 261 (458)
+--++..++.++.+ +..-..+....+ ....+..++...........+-.+++++.|+-.+...+..+....+ .+...
T Consensus 80 ~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~ 158 (268)
T PF08324_consen 80 RFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL 158 (268)
T ss_dssp -HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred chhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence 44566666655553 444334433122 2455555554443334678888899999999999988888887653 23333
Q ss_pred HHHHhcC----CHHHHHHHHHHHHHhhccCcchh--HhhccCchHHHHHHhhc--CChHHHHHHHHHHHHhcccccchhH
Q 012677 262 IDSVRTG----TIETRRNAAAALFSLSALDSNKL--IIGKLGAMTPLIDLLEE--GHPLAMKDVASAIFSLCILLENKRR 333 (458)
Q Consensus 262 v~lL~~~----~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~ 333 (458)
+..+... +..++..++.++.|++..--... .-.....+..++..+.. .++++...++.||.+|...++....
T Consensus 159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 3333333 68899999999999986431111 11112245555664433 4899999999999999977765555
Q ss_pred HHh
Q 012677 334 AVH 336 (458)
Q Consensus 334 i~~ 336 (458)
...
T Consensus 239 ~~~ 241 (268)
T PF08324_consen 239 LAK 241 (268)
T ss_dssp HCC
T ss_pred HHH
Confidence 544
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.19 E-value=20 Score=38.06 Aligned_cols=231 Identities=14% Similarity=0.068 Sum_probs=126.0
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL 260 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~ 260 (458)
...|..-++.|+..+..+|.-+ .-.|..+..+|+++ +..+.-.|+..|..++.++...+..+. .
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~------~~~i~~i~~lL~st----ssaV~fEaa~tlv~lS~~p~alk~Aa~------~ 283 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEK------ARYIRCIYNLLSST----SSAVIFEAAGTLVTLSNDPTALKAAAS------T 283 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHh------hHHHHHHHHHHhcC----CchhhhhhcceEEEccCCHHHHHHHHH------H
Confidence 4456666677777776555443 34577888888875 668888888888888866553333222 2
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCc
Q 012677 261 LIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGA 339 (458)
Q Consensus 261 Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~ 339 (458)
+++++.. ++..++--...-|..+. .+-+.+. .|.+--++++|++++.+++..++.....|+.+...
T Consensus 284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv--------- 350 (948)
T KOG1058|consen 284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV--------- 350 (948)
T ss_pred HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH---------
Confidence 3333322 22222222222233332 1111222 23455566788888889999998888887665432
Q ss_pred HHHHHHHhc-------------cCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 340 VRVILRKIM-------------ENSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 340 v~~Lv~ll~-------------~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
.-++++|. .+..+..-+.+|...+. .|+....+ |+.|++.+.+.. +......+..+...
T Consensus 351 -ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N-~~aas~vl~FvrE~ 423 (948)
T KOG1058|consen 351 -EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSN-EAAASDVLMFVREA 423 (948)
T ss_pred -HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCC-HHHHHHHHHHHHHH
Confidence 11222221 01345666777777766 67665554 788899998653 55444444444443
Q ss_pred hccCchhHHHHHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHHhhHh
Q 012677 406 CFTDRTRTREIMEEENANGTLSRLAE-NGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
-...++ .+. ..+..|+.-+. --+..+-+-|.|++.-.|....
T Consensus 424 iek~p~-Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 424 IEKFPN-LRA-----SIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhCch-HHH-----HHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 333332 222 22333333222 2345566677777766665443
|
|
| >KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.2 Score=49.68 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred Ccccccccc-ccccCC---ccCCCcccccHHHHHHHHhc-----CCCCCCC--CCccCCC
Q 012677 78 YEFRCPISG-EIMTDP---VVLANGQTFDRPCIQRWLDE-----GNRTCPQ--TRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~-~~~~~p---~~l~cgh~fc~~ci~~~~~~-----~~~~CP~--c~~~l~~ 126 (458)
...+|.||+ +.+... .+..|||.||..|+.+++.. ....||. |...++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 356899999 443321 23469999999999999873 2346776 4444544
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=89.67 E-value=2.6 Score=36.10 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=82.0
Q ss_pred hhhhHHhhc---CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-c
Q 012677 170 LNSLLEKMS---SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-D 245 (458)
Q Consensus 170 l~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~ 245 (458)
+..++..|. .+.+.|..+.-.+..+- +..+..+.+ -.-..+-..+..+ +.+....+..++..+=-. +
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~----~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEG----EMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCH----HCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccc----cchhHHHHHHHHHHHhCCCH
Confidence 445555553 24666766666665553 223333222 1112222333332 334555566666554333 3
Q ss_pred hhhhhhhcCCCCHHHHHHHHh--cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-ChH-HHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVR--TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HPL-AMKDVASAI 321 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~-~~~~a~~aL 321 (458)
+....+....|+.+.++.+.. +.+...+..++.+|..=+. ++++...+...+++.|-.+++.+ +.. ++..|+..|
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 344555555579999999998 6677788877776665544 55544444444699999999654 555 788888777
Q ss_pred HH
Q 012677 322 FS 323 (458)
Q Consensus 322 ~~ 323 (458)
..
T Consensus 155 ~K 156 (157)
T PF11701_consen 155 CK 156 (157)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PHA02862 5L protein; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.29 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=34.0
Q ss_pred cccccccccccCCccCCCc-----ccccHHHHHHHHhc-CCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVLANG-----QTFDRPCIQRWLDE-GNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cg-----h~fc~~ci~~~~~~-~~~~CP~c~~~l~~ 126 (458)
..|=||.+.-.+. .-||. ...|+.|+++|++. +...||.|+.+...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 3589999876544 35654 34799999999974 34589999998754
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.35 E-value=4.3 Score=43.49 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=104.6
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHH
Q 012677 266 RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILR 345 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ 345 (458)
..+-..++..+...|..+....+.+..+...+++...+..|++.++-+--+|...+..||.. .....+|-|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 33446678888888888877666666777788999999999998888888888877777643 33456666666
Q ss_pred -HhccC-----CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 346 -KIMEN-----SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 346 -ll~~~-----~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
..+.. +.+-+.-.++.+++. .+-...... -.+...+..++++ +...+..+++.|.+||..........+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 33322 222233345555443 221111111 1245555556643 366688899999998875542222222
Q ss_pred HhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 012677 418 EEENANGTLSRLAE-NGTSRAKRKANGILERLN 449 (458)
Q Consensus 418 ~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~ 449 (458)
......++.+.. +|++-+|+.|+.++..+-
T Consensus 887 --~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 887 --HEVLQLILSLETTDGSVLVRRAAVHLLAELL 917 (982)
T ss_pred --HHHHHHHHHHHccCCchhhHHHHHHHHHHHH
Confidence 123334444443 567788888888887654
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.1 Score=40.73 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCCCHH-------HHHHHHhc-CCHHHHHHHHHHHHHhhccCcchh-Hhh-ccC
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPLAIP-------LLIDSVRT-GTIETRRNAAAALFSLSALDSNKL-IIG-KLG 297 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~-------~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~-~i~-~~g 297 (458)
..-+..|+.+|..|+..+.|-..+...+ -.+ .|+++|.. ++.-.|+.|+.+|.+|+..++... .+. +.+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTp-p~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATP-PFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCC-CHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4668999999999999999988888775 332 34444443 578899999999999999886633 343 488
Q ss_pred chHHHHHHhhcCC
Q 012677 298 AMTPLIDLLEEGH 310 (458)
Q Consensus 298 ~i~~Lv~lL~~~~ 310 (458)
+|..|+..+.+..
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999997753
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.88 E-value=10 Score=42.35 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc----cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhh
Q 012677 262 IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK----LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHA 337 (458)
Q Consensus 262 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~ 337 (458)
+.+|..+.+-++..-...|.-|+. ..++ .=.+..|+..|++.+...|..=-..|..++..-.-+ -++.
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~se 655 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSE 655 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHH
Confidence 344555555666655555555543 2332 226778889998888877766555555555443322 2678
Q ss_pred CcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 338 GAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
+.+|.|.+-|.++ -+..+|+..|..|+...--++..+-. .+....-+|-++ +.=++..++.++..++..-
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~-i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD-ILQDVLPLLCHP-NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH-HHHhhhhheeCc-hHHHHHHHHHHHHHHHhhh
Confidence 8999999999988 47888999999888755444333211 123333444444 4888999999998877543
|
|
| >PHA03096 p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.28 Score=46.20 Aligned_cols=44 Identities=27% Similarity=0.519 Sum_probs=30.0
Q ss_pred cccccccccccC-Cc------cC-CCcccccHHHHHHHHhcC--CCCCCCCCcc
Q 012677 80 FRCPISGEIMTD-PV------VL-ANGQTFDRPCIQRWLDEG--NRTCPQTRQV 123 (458)
Q Consensus 80 ~~C~ic~~~~~~-p~------~l-~cgh~fc~~ci~~~~~~~--~~~CP~c~~~ 123 (458)
-.|.||++...+ |. ++ .|.|.||..||..|-... ..+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 459999975432 21 23 599999999999998743 2356666543
|
|
| >PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.65 Score=45.10 Aligned_cols=32 Identities=22% Similarity=0.584 Sum_probs=23.2
Q ss_pred CCcccc-----cHHHHHHHHhc------------CCCCCCCCCccCCCC
Q 012677 96 ANGQTF-----DRPCIQRWLDE------------GNRTCPQTRQVLSHT 127 (458)
Q Consensus 96 ~cgh~f-----c~~ci~~~~~~------------~~~~CP~c~~~l~~~ 127 (458)
+|+..| |..|+-+||.. +.-.||+||+.+.-.
T Consensus 305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 566666 55899999863 234899999987543
|
They are purported to be transmembrane protein-precursors but their function is unknown. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.81 Score=45.52 Aligned_cols=179 Identities=11% Similarity=0.026 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--C--cchhHhhc--cC-chHHH
Q 012677 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL--D--SNKLIIGK--LG-AMTPL 302 (458)
Q Consensus 230 ~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~--~~~~~i~~--~g-~i~~L 302 (458)
+...|..++.-+..|+..+.-..-.......+...|.+.....|+.+++++.|++.. + .+-....+ .| .+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 344555555555555543322111111344555666666677899999999998642 1 22111111 11 23333
Q ss_pred HHHhh---cCChHHHHHHHHHHHHhcccccchh----HHHhhCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHHHHHH
Q 012677 303 IDLLE---EGHPLAMKDVASAIFSLCILLENKR----RAVHAGAVRVILRKIM-EN--SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 303 v~lL~---~~~~~~~~~a~~aL~~L~~~~~~~~----~i~~~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~~~~~ 372 (458)
...-. -.+.+++.+|.++|.|+...-+... .....|.+..++.-.- .+ +++-+++-++.||-+++..+-+
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 33222 2367899999999999875432111 1222333333333222 22 6899999999999998765322
Q ss_pred H--HhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 373 I--GELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 373 i--~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
= ...-+.+.|..++.+..+-+++.+|+++|..-...
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 2 22235788889998777899999999999876653
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.30 E-value=3.3 Score=37.17 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCC-CCChhHHHHHHHHHHhcccCch-h-hhhhhcCCCCHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRA-DTDPGLLEDLITTILNLSIHDE-N-KRLVAENPLAIPLL 261 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~~a~~~L~~ls~~~~-~-~~~i~~~~~~i~~L 261 (458)
..|+..|.-++. .|+.+..+.+ +..--.|-.+|...++ +.-...+..+++.++.|.++++ . ...+... .++|..
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT-eivPLc 194 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT-EIVPLC 194 (315)
T ss_pred HHHHHHHHHHhc-Ccchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh-hHHHHH
Confidence 467777777776 5888888887 5543333344433211 1235677789999999998865 3 3344444 599999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--------cCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccchh
Q 012677 262 IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--------LGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 262 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
++++..|+.-.+..|+.++..+-.+|.+-..+.+ ..++..++. +.+.+.....+.++++-..|+..+..|.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence 9999999999999999998888887765444322 123333443 3345677788888888888877776665
Q ss_pred HH
Q 012677 333 RA 334 (458)
Q Consensus 333 ~i 334 (458)
.+
T Consensus 275 lL 276 (315)
T COG5209 275 LL 276 (315)
T ss_pred HH
Confidence 43
|
|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.33 Score=32.95 Aligned_cols=30 Identities=27% Similarity=0.780 Sum_probs=23.7
Q ss_pred ccccccccccc--cCCccC--CCcccccHHHHHH
Q 012677 79 EFRCPISGEIM--TDPVVL--ANGQTFDRPCIQR 108 (458)
Q Consensus 79 ~~~C~ic~~~~--~~p~~l--~cgh~fc~~ci~~ 108 (458)
.-.|++|.+.+ .|.++. .||-.|+|.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34699999999 566655 4999999999653
|
|
| >PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.034 Score=39.79 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=23.9
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+..||.|...|..- -||.+|..|-..+... ..||.|++++..
T Consensus 1 e~~CP~C~~~L~~~----~~~~~C~~C~~~~~~~--a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----GGHYHCEACQKDYKKE--AFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEE----TTEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEe----CCEEECccccccceec--ccCCCcccHHHH
Confidence 35799999886532 2888999997765543 369999998753
|
Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A. |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.16 E-value=14 Score=42.29 Aligned_cols=224 Identities=14% Similarity=0.057 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHH---HHHhhc---cCcc--hhHhhccCch
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAA---LFSLSA---LDSN--KLIIGKLGAM 299 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~---L~~Ls~---~~~~--~~~i~~~g~i 299 (458)
=.+++.++.+|..|-.+.++-...-.-......+.+..+.=...+|+.|-.+ |..|+. +..+ +..-.-..++
T Consensus 1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 3788999999998887755322221111234444555444345666666544 444432 1111 1111112244
Q ss_pred HHHHH--HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-------------CcHHHHHHHHHH-h
Q 012677 300 TPLID--LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-------------SLVDELLAILAM-L 363 (458)
Q Consensus 300 ~~Lv~--lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------------~~~~~a~~~L~~-L 363 (458)
|.|+. ++ +.-++++..++.++..|+.+.....+---...+|.|++....- .....++..++. .
T Consensus 1133 PfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~ 1211 (1702)
T KOG0915|consen 1133 PFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASA 1211 (1702)
T ss_pred HHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 44443 33 4467899999999999988776433333345677777666532 112223333321 1
Q ss_pred cCCHHHHHHH------Hh----cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC
Q 012677 364 SSHQDAIEEI------GE----LGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 364 a~~~~~~~~i------~~----~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
+.+...=+.| ++ ...+|.+.++++.+-.-..+..+...+.-|+..-.....-.. ...+.++.-...+-
T Consensus 1212 aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s--gKll~al~~g~~dR 1289 (1702)
T KOG0915|consen 1212 AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS--GKLLRALFPGAKDR 1289 (1702)
T ss_pred hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch--hHHHHHHhhccccc
Confidence 2211111111 11 134677788888655566666777777766654322111111 11222222223334
Q ss_pred CHHHHHHHHHHHHHHHhhHhh
Q 012677 434 TSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++.+++..+.+...|.++...
T Consensus 1290 Nesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1290 NESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred cHHHHHHHHHHHHHHHhcCCh
Confidence 566676666666666655443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.09 E-value=15 Score=38.41 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhh--ccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCC-C
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGE--STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL-A 257 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-~ 257 (458)
.+.+--|+..|+.+..+...+-..+-. ....+..++..+. .++..+..+++.|.|+-.+.-++..+...-. .
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-----~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-----ADPANQLLVVRCLANLFSNPAGRELFMSRLESI 632 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-----cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 455666788888888766655444432 0234445555555 2678888999999999988777776665411 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc--cCcchhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccccc
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSA--LDSNKLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILLEN 330 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~ 330 (458)
+..++..=..++..++.+.+....|++. ..++-+ .|+.+.|...+.. .+.++...++.||.+|+..+..
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 1212222222345666666666666653 222222 4555555555543 2445677788899999999988
Q ss_pred hhHHHhhCcHHHHHHHhccC
Q 012677 331 KRRAVHAGAVRVILRKIMEN 350 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~ 350 (458)
..++...-.+..++.-+++.
T Consensus 709 ~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 709 VIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHhcCHHHHHHHHHHh
Confidence 77777766667777666543
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=88.06 E-value=38 Score=36.86 Aligned_cols=218 Identities=12% Similarity=0.057 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH
Q 012677 181 LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL 260 (458)
Q Consensus 181 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~ 260 (458)
+..-..+...+...+....-+...+.. .....++.+... ..+.++..|+.++...++... ..-...+++..
T Consensus 464 P~Ll~Ra~~~i~~fs~~~~~~~~~~~~---fl~~~v~~l~~~---~~~~~ki~a~~~~~~~~~~~v---l~~~~p~ild~ 534 (1005)
T KOG2274|consen 464 PFLLLRAFLTISKFSSSTVINPQLLQH---FLNATVNALTMD---VPPPVKISAVRAFCGYCKVKV---LLSLQPMILDG 534 (1005)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHH---HHHHHHHhhccC---CCCchhHHHHHHHHhccCcee---ccccchHHHHH
Confidence 444446777776666543322222211 223334444332 345667777777766552211 11112345666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh--cCChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE--EGHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
|.++......++......+|...+..|.......+.-..|....++. +.+|.+...+-..+..|+....+...+ ..-
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence 67776667788888888888888888766666666777787777663 357877777777777777644333333 334
Q ss_pred cHHHHHHHhccC------CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 339 AVRVILRKIMEN------SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 339 ~v~~Lv~ll~~~------~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+|.|++.|..+ ....-++.+|..+.+. ++--..++ .-+.|++.+++-++++..+-.++-.+|..+-...
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 789999999754 3455677777766551 22222222 2246777777766666777777878887776554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.05 E-value=12 Score=38.98 Aligned_cols=167 Identities=11% Similarity=0.120 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcC---CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhcc-CchHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAEN---PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKL-GAMTPL 302 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~---~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~L 302 (458)
..+.+--|+-+|+.+..|...-..+... ...+..++..+. +.+.-+..+++.|.|+-.+..+++.+... ..+-..
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 4556667777887777776543333321 113333444443 45777888999999998887777766552 111111
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHhcc--cccchhHHHhhCcHHHHHHHhc---cC----CcHHHHHHHHHHhcCCHHHHHH
Q 012677 303 IDLLEEG-HPLAMKDVASAIFSLCI--LLENKRRAVHAGAVRVILRKIM---EN----SLVDELLAILAMLSSHQDAIEE 372 (458)
Q Consensus 303 v~lL~~~-~~~~~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~Lv~ll~---~~----~~~~~a~~~L~~La~~~~~~~~ 372 (458)
+.-.+.. +..++...+....|++. ...+-+ .|+.+.|..++. ++ +...+++.+|.+|+..+....+
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 2222333 34455444444445432 222221 344555444443 22 2345688899999998888888
Q ss_pred HHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 373 IGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 373 i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+...-.+..+++-++...+.......
T Consensus 712 ~A~~~~v~sia~~~~~~~~~~~~k~~ 737 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKEAVSNPSGKNI 737 (745)
T ss_pred HHHhcCHHHHHHHHHHhccCchhhHH
Confidence 87776788888888854333333333
|
|
| >PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.26 Score=32.66 Aligned_cols=39 Identities=33% Similarity=0.718 Sum_probs=23.5
Q ss_pred cccccccccC--CccCCCcc-----cccHHHHHHHHhc-CCCCCCCC
Q 012677 82 CPISGEIMTD--PVVLANGQ-----TFDRPCIQRWLDE-GNRTCPQT 120 (458)
Q Consensus 82 C~ic~~~~~~--p~~l~cgh-----~fc~~ci~~~~~~-~~~~CP~c 120 (458)
|-||++.-.+ |.+.||+- ..|+.|+.+|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677765432 56677642 4689999999974 45578887
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=87.73 E-value=18 Score=39.15 Aligned_cols=175 Identities=10% Similarity=0.082 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHH
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRK 346 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~l 346 (458)
.+.++..|+.++...+ ..+.+.. .+.++.|.++....+.++......+|...++.+.......+..+.|.++.+
T Consensus 504 ~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred CCchhHHHHHHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 4556666666665555 2222322 678888888888778899999999999999988877777777778877777
Q ss_pred hc----cCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcC---ChhHHhHHHHHHHHHhccCchhHHHHHHh
Q 012677 347 IM----ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIREST---CERNKENCAAILYNICFTDRTRTREIMEE 419 (458)
Q Consensus 347 l~----~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 419 (458)
.. ++-+...+-.++..|+....+..-+.+ -.||.|+..|.... ......-|+.+|..+..+.+.-....+.
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~- 657 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI- 657 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-
Confidence 64 223445555566666553333333322 25899999997421 2455667777777666655533333332
Q ss_pred hhhhHHHHHHh-hhCCHHHHHHHHHHHHHHH
Q 012677 420 ENANGTLSRLA-ENGTSRAKRKANGILERLN 449 (458)
Q Consensus 420 ~g~~~~L~~ll-~~~~~~~~~~A~~~L~~l~ 449 (458)
.-+.|++.+.. ++++..+-+.+-.+|+.+-
T Consensus 658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 658 CYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 23556666654 5666677777777776554
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.34 E-value=17 Score=39.23 Aligned_cols=209 Identities=14% Similarity=0.079 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-Hhh
Q 012677 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLE 307 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~ 307 (458)
.++..++..|..+.....-...+... +++......|++.+.-+--+|+..+..|+.. .....+|-|.. ..+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~s 813 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYLS 813 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHHh
Confidence 34445555555555433222233332 3555566666666666666666655555432 22344555555 222
Q ss_pred cC---ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHH--HHHHHHhcCCHH
Q 012677 308 EG---HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQD--AIEEIGELGAIP 380 (458)
Q Consensus 308 ~~---~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~--~~~~i~~~g~i~ 380 (458)
.. .++.+...-.|+.++......-..-..+-.+...+..++++ ..+..++++|++||.--+ +...+. ..+.
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~ 891 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQ 891 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHH
Confidence 21 12333334456665544322111111123444455555655 458889999999987222 222232 2356
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHH---hhh-CCHHHHHHHHHHHHHH
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRL---AEN-GTSRAKRKANGILERL 448 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~l---l~~-~~~~~~~~A~~~L~~l 448 (458)
.++.+.+.+++.-++..|+.++..+-.+.+...-.+.+.. ..+..-.+ ... .++..+-.|...+..+
T Consensus 892 ~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~-l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 892 LILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL-LIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 6667777666789999999999998887665444444322 33333332 222 3445666666555444
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=87.07 E-value=25 Score=34.90 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=81.7
Q ss_pred cCchHHHHHHhhcC---ChHHHHHHHHHHHHhcccccc-hhHHHhhCcHHHHHHHhc-cC-----CcHHHHHHHHHHhcC
Q 012677 296 LGAMTPLIDLLEEG---HPLAMKDVASAIFSLCILLEN-KRRAVHAGAVRVILRKIM-EN-----SLVDELLAILAMLSS 365 (458)
Q Consensus 296 ~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~-~~-----~~~~~a~~~L~~La~ 365 (458)
......|-.++++. .+.+-..|+.++..+..+++. -..+.++|.++.+++.+. .+ ++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 33455566677765 567788899999988877764 444677899999999998 54 233445567778899
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcC------ChhHHhHHHHHHHHHhccCch
Q 012677 366 HQDAIEEIGELGAIPCLLRIIREST------CERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~------~~~~~~~a~~~L~~L~~~~~~ 411 (458)
+.++.+.+.+.+.++.+++++.+.. ..+....--..+..|.++.+.
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 9999999999999999999887421 112333334455666666653
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.21 Score=46.09 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=35.3
Q ss_pred CccccccccccccC-C--ccCCCcccccHHHHHHHHhc----------------------CCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTD-P--VVLANGQTFDRPCIQRWLDE----------------------GNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~-p--~~l~cgh~fc~~ci~~~~~~----------------------~~~~CP~c~~~l~~ 126 (458)
..-.|.||+-=|.+ | ..++|-|.|+..|+.+|+.. ....||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34569999876643 4 23589999999999888762 11269999987654
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=86.24 E-value=10 Score=32.58 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=85.2
Q ss_pred CchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 297 GAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 297 g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
..++.|..+|+++ +..+|..++++|..|-.-+..+.+....+.-..- ..-.........+. ..+.. + .-+...-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~--~-~~ee~y~ 84 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-SENSNDESTDISLP-MMGIS--P-SSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-cccccccchhhHHh-hccCC--C-chHHHHH
Confidence 3466778888776 7899999999999998877766653332111000 00000011221111 11111 1 2233333
Q ss_pred cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 376 LGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 376 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
..++..|+++|++..-......++.++.++......++...+ ...+|.++..+...+++.++.--.-|..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446889999999765556666888888888865544444444 4688999999987777766664444433
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >COG3813 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.42 E-value=0.89 Score=32.40 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.8
Q ss_pred CcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHH
Q 012677 97 NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135 (458)
Q Consensus 97 cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l 135 (458)
=.|+||..|.+..+. ..||-|+-.+....++|...+
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 357999999998774 479999999988877776554
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=85.37 E-value=44 Score=33.67 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=110.3
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh-hcCChHHHHH----HHHHHHHhcccccc
Q 012677 257 AIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL-EEGHPLAMKD----VASAIFSLCILLEN 330 (458)
Q Consensus 257 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~----a~~aL~~L~~~~~~ 330 (458)
.+..++.+..+ .+...+..++..+..|.---..-..+ ...+..+..-+ .......+.. ..|....|.....
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~- 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH- 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC-
Confidence 45556665544 45777888888887775321111100 12233333333 2223333333 3444444433222
Q ss_pred hhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCC-HHH-------------HHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 331 KRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSH-QDA-------------IEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~-~~~-------------~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
-.....+..|++++.++.+...++..+.-|..+ ++. |+++-. -.+|.|++-.+..+ ...+.
T Consensus 267 ---~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~-~~~k~ 341 (415)
T PF12460_consen 267 ---PLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEAD-DEIKS 341 (415)
T ss_pred ---chHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcC-hhhHH
Confidence 112245777888998888888888888888876 443 333322 24777877777554 56899
Q ss_pred HHHHHHHHHhccCchhHHHHHH-hhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 397 NCAAILYNICFTDRTRTREIME-EENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+-+.+|..|..+-+.. .+.. -...+|.|+.-+...+..++..+..+|..+-...
T Consensus 342 ~yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999987743 2222 2346666666676677788888888887776544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=85.32 E-value=6.4 Score=33.99 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=71.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccchh-
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLENKR- 332 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~- 332 (458)
.+..+..+|++++...|-.++..+..++.... .+.+.+ ..-+..|+.+|+.. .+.+.+.++.+|..|...-....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 55567788899899999988888887766432 344434 34678888888876 55677888888877754333222
Q ss_pred ---HHHh---hCcHHHHHHHhccCCcHHHHHHHHHHhcC
Q 012677 333 ---RAVH---AGAVRVILRKIMENSLVDELLAILAMLSS 365 (458)
Q Consensus 333 ---~i~~---~g~v~~Lv~ll~~~~~~~~a~~~L~~La~ 365 (458)
.+.- .+.++.+++++.++...+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2222 15566666666655566667777766644
|
|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.11 E-value=0.64 Score=48.62 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=35.8
Q ss_pred CCCCCccccccccccccCCcc----CC---CcccccHHHHHHHHhc-----CCCCCCCCCc
Q 012677 74 LGLPYEFRCPISGEIMTDPVV----LA---NGQTFDRPCIQRWLDE-----GNRTCPQTRQ 122 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~----l~---cgh~fc~~ci~~~~~~-----~~~~CP~c~~ 122 (458)
.+..+..+|++|...+.+|+- .| |+|.||..||..|..+ .+..|++|..
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 345677889999988888652 34 9999999999999863 1235566543
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.09 E-value=6.9 Score=43.44 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=96.9
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
++++.|..|.-+|..+.--+..+. ....|.|+..+..+ .++.++.+++-+++.++..=+| +++ . .-
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fc------es~l~llftimeks---p~p~IRsN~VvalgDlav~fpn---lie-~-~T 1000 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFC------ESHLPLLFTIMEKS---PSPRIRSNLVVALGDLAVRFPN---LIE-P-WT 1000 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHhcC---CCceeeecchheccchhhhccc---ccc-h-hh
Confidence 457788888888887775444333 24588899999854 4789999999888888755433 222 2 56
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
+.|...|...+..+|+.|.-+|..|..++ .|--.|.+..++.++.+++++++.-|=.-...|+
T Consensus 1001 ~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1001 EHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 67888999999999999999999998765 4444899999999999999888777664444443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.13 E-value=12 Score=40.24 Aligned_cols=191 Identities=16% Similarity=0.063 Sum_probs=115.8
Q ss_pred HHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHH--HHHHHHhc
Q 012677 190 ELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIP--LLIDSVRT 267 (458)
Q Consensus 190 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~--~Lv~lL~~ 267 (458)
.|-..+..++.+...+.+ .|++..+...+... ...+.+..++..|.|++...+++....... .+. .+-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~-~~g~~~~~~~l~~f---~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLD-NGGMKLLFKCLESF---DNEELHRKILGLLGNLAEVLELRELLMIFE-FIDFSVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHh-cccHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHhh
Confidence 666888888999999999 99999999999875 367899999999999998776544443322 222 22234444
Q ss_pred CCH-HHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHH-HH
Q 012677 268 GTI-ETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV-IL 344 (458)
Q Consensus 268 ~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~-Lv 344 (458)
-+. +.-..|+++|+.+..+.+....... .-+-..++... .. .........-...+.+ +.
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i---------------~~---~~~~~~~~~~~~~f~~~~~ 630 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAI---------------SR---WLTSEIRVINDRSFFPRIL 630 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHh---------------hc---cCccceeehhhhhcchhHH
Confidence 343 7778888888887665443111110 11111122111 11 1111111111122222 33
Q ss_pred HHhc---cCCcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 345 RKIM---ENSLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 345 ~ll~---~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
+++. .+..+--|++++.++.. .+++.+.+.+.|+++.+.+.-..+....+++.+...+-
T Consensus 631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 3443 33678889999999988 77888888889988888776653323455555554443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.95 E-value=0.69 Score=48.20 Aligned_cols=44 Identities=20% Similarity=0.557 Sum_probs=32.3
Q ss_pred ccccccccccccCCccC--CCcccccHHHHHHHHhcCCCCCCC-CCcc
Q 012677 79 EFRCPISGEIMTDPVVL--ANGQTFDRPCIQRWLDEGNRTCPQ-TRQV 123 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~-c~~~ 123 (458)
.|.|.||.--.+.-... .|||..+.+|..+||..|. .||. |+..
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGCH 1074 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCcC
Confidence 45688877655544333 6999999999999999765 7987 5443
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=83.94 E-value=13 Score=38.57 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHH
Q 012677 309 GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~l 385 (458)
++.+.+.-|+..|.....+-+... ..++..+++|..+. .++..|+..|-.+|. +++....+ +..|+++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHH
Confidence 466677777777766655443322 23566677777766 467778888888887 45666665 4677888
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh---hCCHHHHHHHHHHHH
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE---NGTSRAKRKANGILE 446 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~---~~~~~~~~~A~~~L~ 446 (458)
|+.. +..-...+-.+|..|...++. +.+..|..-+. .+++.+++++...|.
T Consensus 105 L~td-d~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 105 LQTD-DPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp TT----HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred Hhcc-cHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 8843 355556666677766665532 22333333333 566667777666553
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins | Back alignment and domain information |
|---|
Probab=83.94 E-value=0.54 Score=32.21 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=23.7
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhc-CCCCCCCCCcc
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-GNRTCPQTRQV 123 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-~~~~CP~c~~~ 123 (458)
+.|.||.|.+.+... .+...|....... ....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 468899999844321 2444555554433 23579999763
|
Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=83.87 E-value=38 Score=31.73 Aligned_cols=181 Identities=14% Similarity=0.068 Sum_probs=101.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc--CChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 261 LIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE--GHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
|-..|.+++..+|..|...|..+...-+. .. ....-+..|+..+.+ .|......++.+|..|...... ..+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~~~ 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP-DF-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----SPE 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH-hh-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----Chh
Confidence 44567778889999998888876542221 11 222235666665544 3566666667777777643321 111
Q ss_pred cHHHHHHHhccC--------CcHHHHHHHHHHhcCCHHHHHHHHhc--CCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 339 AVRVILRKIMEN--------SLVDELLAILAMLSSHQDAIEEIGEL--GAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 339 ~v~~Lv~ll~~~--------~~~~~a~~~L~~La~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.+..+++.+.+. ..+..+..+|..|..+ .+..+.+. +.+..+++++....+|+.-..+..++..+...
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 122233322211 3466677777777553 22333322 34667777776555676666666666665433
Q ss_pred CchhHHHHHH-------------------------------------------hhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 409 DRTRTREIME-------------------------------------------EENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 409 ~~~~~~~~~~-------------------------------------------~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
.+- ....+ ..-.+|.|++-+.++++.+|.-+...|
T Consensus 155 ~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 155 FDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred ccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 221 01111 023566777777888888998888888
Q ss_pred HHHHhhH
Q 012677 446 ERLNKAA 452 (458)
Q Consensus 446 ~~l~~~~ 452 (458)
..+....
T Consensus 233 ~~c~~~y 239 (262)
T PF14500_consen 233 KACIENY 239 (262)
T ss_pred HHHHHHC
Confidence 8766543
|
|
| >KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=83.33 E-value=0.68 Score=40.68 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=37.2
Q ss_pred cccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 80 FRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..|.+|..+...-+.- .||-.|+++|+.+++.+ ...||.|+--.+.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 3699999988776654 58888999999999986 5689999765543
|
|
| >COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.94 E-value=1 Score=47.03 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=38.9
Q ss_pred CCCccccccccccccCCc----------cCCCcccc--------------------cHHHHHHHHhc-------CCCCCC
Q 012677 76 LPYEFRCPISGEIMTDPV----------VLANGQTF--------------------DRPCIQRWLDE-------GNRTCP 118 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~----------~l~cgh~f--------------------c~~ci~~~~~~-------~~~~CP 118 (458)
+||--+|+-|.+.|.||- -+.||..| |..|-.+|-.. +...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 577889999999999873 24688888 99999887542 234899
Q ss_pred CCCccCC
Q 012677 119 QTRQVLS 125 (458)
Q Consensus 119 ~c~~~l~ 125 (458)
.|+-.+.
T Consensus 178 ~CGP~~~ 184 (750)
T COG0068 178 KCGPHLF 184 (750)
T ss_pred ccCCCeE
Confidence 9997654
|
|
| >PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=82.58 E-value=0.47 Score=30.95 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=23.4
Q ss_pred cccccccccCCccCCC-cccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 82 CPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 82 C~ic~~~~~~p~~l~c-gh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
|--|... +--.+.| .|..|..|+...+.. +..||+|+.+++.
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 4444433 2234455 588999999998875 5579999999874
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A. |
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
Probab=82.22 E-value=0.76 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=11.1
Q ss_pred ccccccccccCCcc-CC-Ccccc
Q 012677 81 RCPISGEIMTDPVV-LA-NGQTF 101 (458)
Q Consensus 81 ~C~ic~~~~~~p~~-l~-cgh~f 101 (458)
.||-|......-.. -| |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 47777765533222 23 66655
|
Several members are annotated as putative helicases. |
| >PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.63 E-value=0.45 Score=39.95 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.8
Q ss_pred CccccccccccccCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVLAN 97 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~c 97 (458)
++.+||||++...+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 35689999999999998754
|
The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.28 E-value=50 Score=35.23 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh
Q 012677 351 SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 351 ~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+++..|.-+|.-++. +| ..++..|.+|..+.++.++.-++.+|.--|.+...+
T Consensus 570 DVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred HHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 455555555554443 33 236788999998888999999999999888877643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 458 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 4e-20 | ||
| 2kre_A | 100 | Solution Structure Of E4bUFD2A U-Box Domain Length | 9e-06 | ||
| 2kr4_A | 85 | U-Box Domain Of The E3 Ubiquitin Ligase E4b Length | 9e-06 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 4e-04 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 4e-04 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 8e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain Length = 100 | Back alignment and structure |
|
| >pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b Length = 85 | Back alignment and structure |
|
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
|
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-41
Identities = 36/73 (49%), Positives = 57/73 (78%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVR 136
P FRCPIS E+M DPV+++ GQT++R IQ+WLD G++TCP++++ L H L PN++++
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 137 EMISQWCKEHGIE 149
+I+ WC+ +GIE
Sbjct: 66 SLIALWCESNGIE 78
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 7e-38
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 5 EVEETESCVRKAVELKKELQRLVKAILDEDDYGGLQVTNEA-----LRVLSCLKDLKLKK 59
E + + + EL L +L+ A + + ++ ++++ + + D L
Sbjct: 28 NSIEEKR-ISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMD 86
Query: 60 PHSFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQ 119
+P IS E+M +P + +G T+DR I+ L P
Sbjct: 87 MDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPV 146
Query: 120 TRQVLSHTVLIPNHLVREMISQWCKEHGI 148
TR L+ LIPN ++E+I + +E+G
Sbjct: 147 TRSPLTQDQLIPNLAMKEVIDAFIQENGW 175
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-32
Identities = 37/243 (15%), Positives = 101/243 (41%), Gaps = 13/243 (5%)
Query: 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDP 228
+ L S + +Q A ++ + ++ A+P L+ LS +
Sbjct: 16 QMTQQLN--SDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLS----SPNE 68
Query: 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-D 287
+L++ + + N++ + + A+P L+ + + + + A AL ++++ +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL-LENKRRAVHAGAVRVILRK 346
+ GA+ L+ LL + +++ A+ ++ E + + AGA+ +++
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188
Query: 347 IMENS--LVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403
+ + ++ E L L+ ++S + + + E GA+ L ++ E+ ++ L
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALE 247
Query: 404 NIC 406
+
Sbjct: 248 KLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-14
Identities = 32/201 (15%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAMK 315
+P + + + ++ + +A + + + + GA+ L+ LL + ++
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 316 DVASAIFSLCILLENKRRAV-HAGAVRVILR-------KIMENSLVDELLAILAMLSSHQ 367
+ A+ ++ + +AV AGA+ +++ +I++ + L A+ + S
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA----LWALSNIASGGN 128
Query: 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLS 427
+ I+ + + GA+P L++++ S E+ + L NI + + ++ + A L
Sbjct: 129 EQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALV 186
Query: 428 RLAENGTSRAKRKANGILERL 448
+L + + ++A L +
Sbjct: 187 QLLSSPNEQILQEALWALSNI 207
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-07
Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 6/160 (3%)
Query: 286 LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV-HAGAVR--V 342
+ + + + L + + +AV AGA+ V
Sbjct: 1 MRGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 343 ILRKIMENSLVDELLAILAMLSSHQDA-IEEIGELGAIPCLLRIIRESTCERNKENCAAI 401
L ++ E L L+ ++S + I+ + + GA+P L++++ E+ +
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWA 119
Query: 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKA 441
L NI + + + + A L +L + + ++A
Sbjct: 120 LSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 51/282 (18%), Positives = 103/282 (36%), Gaps = 16/282 (5%)
Query: 170 LNSLLEKMSSSLSD--QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTD 227
+++++ M ++ + A L L+ A+F + IP L+ L
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF--KSGGIPALVKMLGSP----V 111
Query: 228 PGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD 287
+L ITT+ NL +H E ++ + ++ + ++ L L+ +
Sbjct: 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171
Query: 288 S-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVAS-AIFSLCILLENKRRAVHAGAVRVILR 345
+KLII G L++++ + S + L + NK V AG ++ +
Sbjct: 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231
Query: 346 KIMENS--LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403
+ + S LV L L LS ++ G G + L++++ A IL
Sbjct: 232 HLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDD-INVVTCAAGILS 288
Query: 404 NICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445
N+ + + + ++ + L R R I
Sbjct: 289 NLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 11/250 (4%)
Query: 208 STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT 267
+T AIP L L+ D D ++ + LS + ++ + +P + ++ +++
Sbjct: 12 ATRAIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 67
Query: 268 GT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326
+ET R A L +LS L I K G + L+ +L + + + +L +
Sbjct: 68 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127
Query: 327 LLENKRRAV-HAGAVRVI---LRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCL 382
E + AV AG ++ + L K L + + +Q++ I G L
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187
Query: 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442
+ I+R T E+ + +L + + + E L + + R +
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPSQRLVQNCL 245
Query: 443 GILERLNKAA 452
L L+ AA
Sbjct: 246 WTLRNLSDAA 255
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 4e-19
Identities = 42/293 (14%), Positives = 87/293 (29%), Gaps = 44/293 (15%)
Query: 177 MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236
S ++ AA L LT + + + I L+ + RA + E I
Sbjct: 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVL--RAGDREDITEPAIC 329
Query: 237 TILNLSIHDENK---RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFS-LSALDSNKLI 292
+ +L+ + + +P+++ + + A L L+ +N
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389
Query: 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL 352
+ + GA+ L+ LL H + + + + + G
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT------------ 437
Query: 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412
L +L+ I L IP ++++ E + A +L +
Sbjct: 438 -----GALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAA 491
Query: 413 TREIMEE------------------ENANGTLSRLAENGTSRAKRKANGILER 447
I E A L R++E+ K++ + L
Sbjct: 492 -EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 4e-16
Identities = 48/308 (15%), Positives = 90/308 (29%), Gaps = 74/308 (24%)
Query: 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKR---MPLFRALFGESTDAIPLLLSPLSPGRAD 225
L + + + A LR LT R + + +P+++ L P
Sbjct: 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPP--- 364
Query: 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAA-------- 277
+ L++ + I NL++ N + E AIP L+ + +T+R +
Sbjct: 365 SHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423
Query: 278 --------------AALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323
AL L+ N+++I L + + LL + A +
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483
Query: 324 LCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLL 383
L ++A E I GA L
Sbjct: 484 LA---------------------------------------QDKEAAEAIEAEGATAPLT 504
Query: 384 RIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443
++ S E AA+L+ + ++ + E S L A+
Sbjct: 505 ELLH-SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL----TSSLFRTEPMAWNETADL 559
Query: 444 ILERLNKA 451
L+ +
Sbjct: 560 GLDIGAQG 567
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 8e-11
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 6/160 (3%)
Query: 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL 352
A+ L LL + + + A + L ++ + + + + + M+N+
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 353 VDELL----AILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408
E L LS H++ + I + G IP L++++ S + L+N+
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLH 128
Query: 409 DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448
+ + L + L+ L
Sbjct: 129 QEGAKMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQIL 167
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-31
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 67 AAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126
+ + P EFR P+ +MTDPV L +G DR I R L + T P RQ+L+
Sbjct: 2 GSAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTE 60
Query: 127 TVLIPNHLVREMISQWCKEH 146
++L P ++E I W +E
Sbjct: 61 SMLEPVPELKEQIQAWMREK 80
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 9e-30
Identities = 48/299 (16%), Positives = 114/299 (38%), Gaps = 11/299 (3%)
Query: 159 EDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSP 218
+ + + + +++ E ++ L+ + ++ +T AIP L
Sbjct: 99 PETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKL 158
Query: 219 LSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGT-IETRRNAA 277
L+ D D ++ + LS + ++ + +P + ++ +++ +ET R +
Sbjct: 159 LN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214
Query: 278 AALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV-H 336
L +LS L I K G + L+++L + + + +L + E + AV
Sbjct: 215 GTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274
Query: 337 AGAVRVILRKIMENS---LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCER 393
AG ++ ++ + + + L + + +Q++ I G L+ I+R T E+
Sbjct: 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 334
Query: 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452
+ +L + + + E L + + R + L L+ AA
Sbjct: 335 LLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 50/286 (17%), Positives = 97/286 (33%), Gaps = 29/286 (10%)
Query: 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDP 228
L LL S ++ AA L LT + + + I L+ + RA
Sbjct: 403 TLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVL--RAGDRE 457
Query: 229 GLLEDLITTILNLSIHDENK---RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285
+ E I + +L+ ++ + +P+++ + + A L A
Sbjct: 458 DITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 517
Query: 286 LDS-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVIL 344
L N + + GA+ L+ LL H + +RR G + +
Sbjct: 518 LCPANHAPLREQGAIPRLVQLLVRAHQ-----------------DTQRRTSMGGTQQQFV 560
Query: 345 RKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404
+ +V+ L +L+ I L IP ++++ E + A +L
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCE 619
Query: 405 ICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450
+ E +E E A L+ L + A +L R+++
Sbjct: 620 LAQDK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-24
Identities = 42/271 (15%), Positives = 92/271 (33%), Gaps = 14/271 (5%)
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITT 237
S S A L L + + + +++ L+ + L
Sbjct: 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKT----NVKFLAITTDC 299
Query: 238 ILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIET-RRNAAAALFSLSALDSNKLIIGKL 296
+ L+ ++ +L+ L++ +RT T E + L LS SNK I +
Sbjct: 300 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 359
Query: 297 GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS--LVD 354
G M L L + +++ + +L ++ G + +++ + + +V
Sbjct: 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINVVT 417
Query: 355 ELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTC-ERNKENCAAILYNICF--TDR 410
IL+ L+ + + ++G I L+R + + E E L ++ D
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477
Query: 411 TRTREIMEEENANGTLSRLAENGTSRAKRKA 441
+ + + +L + KA
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 9e-12
Identities = 35/213 (16%), Positives = 63/213 (29%), Gaps = 20/213 (9%)
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADT----------- 226
S +A L P A E AIP L+ L DT
Sbjct: 499 PPSHWPLIKATVGLIRNLALCPANHAPLREQ-GAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557
Query: 227 -------DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAA 279
++E + L+ N+ ++ IPL + + + +R AA
Sbjct: 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN-TIPLFVQLLYSPIENIQRVAAGV 616
Query: 280 LFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGA 339
L L+ I GA PL +LL + A+ +F + + +
Sbjct: 617 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 676
Query: 340 VRVILRKIMENSLVDELLAILAMLSSHQDAIEE 372
+ L + + + L + + +
Sbjct: 677 LTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYR 709
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-29
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129
+ P EFR P+ +MTDPV L +G DR I R L T P RQ L+ ++L
Sbjct: 20 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESML 78
Query: 130 IPNHLVREMISQWCKEH 146
P ++E I W +E
Sbjct: 79 EPVPELKEQIQAWMREK 95
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 8e-28
Identities = 50/308 (16%), Positives = 109/308 (35%), Gaps = 28/308 (9%)
Query: 165 ASRSHLNSLLEKMSSSLSD-QKEAAKELRLLTKRMPLFRALFGESTDAIPLLL------- 216
A ++ M + + A L L+ R E + +
Sbjct: 29 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDC 86
Query: 217 SPLSPGRADTDPGLLEDLITTILNLSIHD-ENKRLVAENPLAIPLLIDSVRTGTIETRRN 275
L + NL+ D NK + + L+ +++ + + ++
Sbjct: 87 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 146
Query: 276 AAAALFSLSALDS--NKLIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILL-ENK 331
A+ L +LS +K + ++G++ L++ E +K V SA+++L ENK
Sbjct: 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206
Query: 332 RRAVHA-GAVRVILRKIMENS------LVDELLAILAMLSS----HQDAIEEIGELGAIP 380
GA+ ++ + S +++ IL +SS ++D + + E +
Sbjct: 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 266
Query: 381 CLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRK 440
LL+ ++ + N L+N+ + + +E + + A L L +
Sbjct: 267 TLLQHLKSHS-LTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMG 324
Query: 441 ANGILERL 448
+ L L
Sbjct: 325 SAAALRNL 332
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 2e-16
Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 21/220 (9%)
Query: 178 SSSLSDQKEAAKELRLLTKRM-PLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236
S S Q+ A LR L+ R + E ++ L+ L+ +++
Sbjct: 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEV---KKESTLKSVLS 193
Query: 237 TILNLSIH-DENKRLVAENPLAIP----LLIDSVRTGTIETRRNAAAALFSLSAL----D 287
+ NLS H ENK + A+ L +T T+ + L ++S+L +
Sbjct: 194 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253
Query: 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVI--L 344
++ I+ + + L+ L+ + + +++L +++ GAV ++ L
Sbjct: 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313
Query: 345 RKIMENSLVDELLAILAMLSSHQDAIEEIGE----LGAIP 380
+ A L L +++ A + ++P
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 4e-16
Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 22/226 (9%)
Query: 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLI 303
+ A P + + + A L LS + ++ + +LG + +
Sbjct: 21 ETCWEWQEAHEP-GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79
Query: 304 DLLEEGHPLAMKD-----------VASAIFSLCILLENKRRAV--HAGAVRVILRKIMEN 350
+LL+ + A+ +L + + G +R ++ ++
Sbjct: 80 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139
Query: 351 S--LVDELLAILAMLSSHQDAI--EEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406
S L + ++L LS D + + E+G++ L+ E E ++ + L+N+
Sbjct: 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199
Query: 407 FTDRTRTREIMEEENA----NGTLSRLAENGTSRAKRKANGILERL 448
+I + A GTL+ ++ T GIL +
Sbjct: 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 4e-27
Identities = 46/246 (18%), Positives = 97/246 (39%), Gaps = 11/246 (4%)
Query: 208 STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT 267
+T AIP L L+ D D ++ + LS + ++ + +P + ++ +++
Sbjct: 15 ATRAIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 268 GT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326
+ET R A L +LS L I K G + L+ +L + + + +L +
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 327 LLENKRRAV-HAGAVRVILRKIMENS--LVDELLAILAMLS-SHQDAIEEIGELGAIPCL 382
E + AV AG ++ ++ + + + + L +L+ +Q++ I G L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442
+ I+R T E+ + +L + + + E L + + R +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLTDPSQRLVQNCL 248
Query: 443 GILERL 448
L L
Sbjct: 249 WTLRNL 254
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 38/272 (13%), Positives = 91/272 (33%), Gaps = 16/272 (5%)
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITT 237
S S A L L + + + +++ L+ + L
Sbjct: 112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKT----NVKFLAITTDC 166
Query: 238 ILNLSIHD-ENKRLVAENPLAIPLLIDSVRTGTIET-RRNAAAALFSLSALDSNKLIIGK 295
+ L+ + E+K ++ + L++ +RT T E + L LS SNK I +
Sbjct: 167 LQILAYGNQESKLIILASG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225
Query: 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS---L 352
G M L L + +++ + +L ++ G + +++ + + +
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQLLGSDDINVV 283
Query: 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTC-ERNKENCAAILYNICF--TD 409
+ + ++ + ++G I L+R + + E E L ++ +
Sbjct: 284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 343
Query: 410 RTRTREIMEEENANGTLSRLAENGTSRAKRKA 441
+ + + +L + KA
Sbjct: 344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 1e-22
Identities = 44/276 (15%), Positives = 86/276 (31%), Gaps = 27/276 (9%)
Query: 177 MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236
S ++ AA L LT + + + I L+ + RA + E I
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVL--RAGDREDITEPAIC 332
Query: 237 TILNLSIHDENK---RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLI 292
+ +L+ + + +P+++ + + A L AL N
Sbjct: 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 392
Query: 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL 352
+ + GA+ L+ LL H + + + + + G
Sbjct: 393 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT------------ 440
Query: 353 VDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTR 412
L +L+ I L IP ++++ E + A +L +
Sbjct: 441 -----GALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDK--E 492
Query: 413 TREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448
E +E E A L+ L + A +L R+
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 44/262 (16%), Positives = 80/262 (30%), Gaps = 70/262 (26%)
Query: 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKR---MPLFRALFGESTDAIPLLLSPLSPGRAD 225
L + + + A LR LT R + + +P+++ L P
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPP--- 367
Query: 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAA-------- 277
+ L++ + I NL++ N + E AIP L+ + +T+R +
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426
Query: 278 --------------AALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323
AL L+ N+++I L + + LL
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE------------ 474
Query: 324 LCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLL 383
+R A L L+ ++A E I GA L
Sbjct: 475 -----NIQRVAAGV----------------------LCELAQDKEAAEAIEAEGATAPLT 507
Query: 384 RIIRESTCERNKENCAAILYNI 405
++ E AA+L+ +
Sbjct: 508 ELLHSRN-EGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 7e-11
Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 8/174 (4%)
Query: 279 ALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAG 338
A+ +L + + A+ L LL + + + A + L ++ + +
Sbjct: 1 AVVNLINYQDDAEL--ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 339 AVRVILRKIMENSLVDELL----AILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERN 394
+ + + M+N+ E L LS H++ + I + G IP L++++ S +
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG-SPVDSV 117
Query: 395 KENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448
L+N+ + + L + L+ L
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQIL 170
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 7/130 (5%)
Query: 155 KDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPL 214
+D S + + L +L R R + + IPL
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGL-NTIPL 464
Query: 215 LLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRR 274
+ L + + L+ E + A L + + +
Sbjct: 465 FVQLLY----SPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATAPLTELLHSRNEGVAT 519
Query: 275 NAAAALFSLS 284
AAA LF +S
Sbjct: 520 YAAAVLFRMS 529
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 49/295 (16%), Positives = 105/295 (35%), Gaps = 27/295 (9%)
Query: 177 MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-------TDPG 229
+ A L L+ R E + + L
Sbjct: 158 PAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSIT 215
Query: 230 LLEDLITTILNLSIHD-ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-- 286
L + NL+ D NK + + L+ +++ + + ++ A+ L +LS
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 287 DSNKLIIGKLGAMTPLIDLLEEGH-PLAMKDVASAIFSLCILL-ENKRRAVHA-GAVRVI 343
++K + ++G++ L++ E +K V SA+++L ENK GA+ +
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335
Query: 344 LRKIMENS------LVDELLAILAMLSSH----QDAIEEIGELGAIPCLLRIIRESTCER 393
+ + S +++ IL +SS +D + + E + LL+ ++ +
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LT 394
Query: 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448
N L+N+ + + +E + + A L L + + L L
Sbjct: 395 IVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 3e-17
Identities = 50/341 (14%), Positives = 112/341 (32%), Gaps = 60/341 (17%)
Query: 166 SRSHLNSLLEKMSSSLS-----DQKEAAKELRLLTKRMPLFRALFGESTDAIPLLL---- 216
SHL + +E + S LS D+ + ++ L ++ ++ + +PLL+
Sbjct: 23 LTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMR--QSGCLPLLIQLLH 80
Query: 217 ----SPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLL----------- 261
+ G + + N+ + + + LL
Sbjct: 81 GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140
Query: 262 -------------IDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE 308
+ + A L LS + ++ + +LG + + +LL+
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200
Query: 309 GHPLAMKD-----------VASAIFSLCILLENKRRAV--HAGAVRVILRKIMENS--LV 353
+ A+ +L + + G +R ++ ++ S L
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260
Query: 354 DELLAILAMLSSHQDAI--EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411
+ ++L LS D + + E+G++ L+ E E ++ + L+N+
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320
Query: 412 RTREIMEEENA----NGTLSRLAENGTSRAKRKANGILERL 448
+I + A GTL+ ++ T GIL +
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 4e-16
Identities = 37/247 (14%), Positives = 81/247 (32%), Gaps = 51/247 (20%)
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITT 237
S S Q+ A LR L+ R + ++ L+ L+ +++
Sbjct: 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSA 310
Query: 238 ILNLSIH-DENKRLVAENPLAIP----LLIDSVRTGTIETRRNAAAALFSLSAL----DS 288
+ NLS H ENK + A+ L +T T+ + L ++S+L +
Sbjct: 311 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 370
Query: 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM 348
++ I+ + + L+ L+ + + +++L
Sbjct: 371 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS----------------------- 407
Query: 349 ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408
+ + E + ++GA+ L +I + AA L N+
Sbjct: 408 ---------------ARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMAN 451
Query: 409 DRTRTRE 415
+ ++
Sbjct: 452 RPAKYKD 458
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-26
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
EF PI +M DPVVL + + T DR I R L T P R L+ + PN +
Sbjct: 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTEL 78
Query: 136 REMISQWCKEH 146
+E I +W E
Sbjct: 79 KEKIQRWLAER 89
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-24
Identities = 34/202 (16%), Positives = 82/202 (40%), Gaps = 11/202 (5%)
Query: 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDP 228
+ L S + + A ++L + ++ A+P L+ LS +
Sbjct: 16 QMVQQLN--SPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLS----SPNE 68
Query: 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-D 287
+L++ + + N++ + + A+P L+ + + + + A AL ++++ +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV-HAGAVRVI--L 344
+ GA+ L+ LL + +++ A+ ++ +++AV AGA+ + L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 345 RKIMENSLVDELLAILAMLSSH 366
+ + E L L SH
Sbjct: 189 QSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 7e-18
Identities = 35/197 (17%), Positives = 91/197 (46%), Gaps = 7/197 (3%)
Query: 257 AIPLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMK 315
+P ++ + + + ++A L +++ + + GA+ L+ LL + ++
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 316 DVASAIFSLCILLENKRRAV-HAGAVRVILR--KIMENSLVDELLAILAMLSSH-QDAIE 371
+ A+ ++ + +AV AGA+ +++ ++ E L L+ ++S + I+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431
+ + GA+P L++++ E+ + L NI + ++ ++E A L +L
Sbjct: 133 AVIDAGALPALVQLLSSPN-EQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQS 190
Query: 432 NGTSRAKRKANGILERL 448
+ + +++A LE+L
Sbjct: 191 HENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 25/180 (13%), Positives = 71/180 (39%), Gaps = 11/180 (6%)
Query: 286 LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV-HAGAVRVIL 344
+ + + ++ L ++ + + + +AV AGA+ ++
Sbjct: 1 MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60
Query: 345 RKIMENS--LVDELLAILAMLSSHQDA-IEEIGELGAIPCLLRIIRESTCERNKENCAAI 401
+ + + ++ E L L+ ++S + I+ + + GA+P L++++ S E+ +
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWA 119
Query: 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL-----NKAALIVH 456
L NI + + ++ + A L +L + + ++A L + + +
Sbjct: 120 LSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 14/146 (9%)
Query: 24 QRLVKAILDEDDYGGLQVTNEALRVLS------------CLKDLKLKKPHSFKGGAAGDD 71
+ A+ ++ + A+ +L L + K K D
Sbjct: 824 SEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDL 883
Query: 72 HLLGLPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130
+P EF P+ IM DPV+L DR I+ L + T P R L +
Sbjct: 884 EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVT 942
Query: 131 PNHLVREMISQWCKEHGIELPKPIKD 156
PN +R+ I + K+ E +
Sbjct: 943 PNEELRQKILCFKKQKKEEAKHKASE 968
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 95.9 bits (238), Expect = 2e-21
Identities = 47/306 (15%), Positives = 115/306 (37%), Gaps = 11/306 (3%)
Query: 149 ELPKPIKDTDEDVVTDASRSHLNSLLEKMSSS-LSDQKEAAKELRLLTKRMPLFRALFGE 207
+ + + + L + ++++S + +Q A + R + R
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 208 STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT 267
+P L+ + + L + + N++ + V + A+PL I + T
Sbjct: 128 QAGVVPRLVEFMRE---NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 268 GTIETRRNAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326
G++E + A AL +++ + + + AM P++ L P ++ + +LC
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244
Query: 327 LLENKRR-AVHAGAVRVILRKIMENS---LVDELLAILAMLSSHQDAIEEIGELGAIPCL 382
+ + +V + A+ + + I LVD AI + Q+AI+ + ++ L
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442
+ ++ + + NI + +T+ ++ L L + K++A
Sbjct: 305 VELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEAC 362
Query: 443 GILERL 448
+ +
Sbjct: 363 WTISNI 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 2e-18
Identities = 47/291 (16%), Positives = 105/291 (36%), Gaps = 14/291 (4%)
Query: 170 LNSLLEKMSSSLSDQKE-AAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDP 228
+ ++ + + + KE A L + +R + +A+ +L + P
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNS----NKP 229
Query: 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288
L+ T+ NL + + + A+P L + + ET +A A+ LS
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289
Query: 289 NKL-IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKI 347
+ + + L++LL L A+ ++ + + + V V LR +
Sbjct: 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
Query: 348 MEN---SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403
+ + ++ E ++ +++ + I+ + + IP L++++ E + K+ +
Sbjct: 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL-EVAEYKTKKEACWAIS 408
Query: 404 NICFTDRTRTREIME--EENANGTLSRLAENGTSRAKRKANGILERLNKAA 452
N R I + L L E +R LE + K
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 6e-13
Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 19/252 (7%)
Query: 215 LLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRR 274
L L+ D L D I LS + + L++ + + +
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317
Query: 275 NAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRR 333
A A+ ++ D ++ G + L LL K+ I ++ + +
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 334 AV-HAGAV--RVILRKIMENSLVDELLAILAMLSSH----QDAIEEIGELGAIPCLLRII 386
AV A + V L ++ E E ++ SS D I + G I L ++
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 387 RESTCERNKENCAAILYNICFTDRTRTR----------EIMEEENANGTLSRLAENGTSR 436
E R E L NI + +E+ + +N +
Sbjct: 438 -EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK 496
Query: 437 AKRKANGILERL 448
KA I+E
Sbjct: 497 IYEKAYKIIETY 508
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 30/201 (14%), Positives = 73/201 (36%), Gaps = 16/201 (7%)
Query: 177 MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236
S Q A + + + L + + +P L LS + ++
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINA-GVLPALRLLLS----SPKENIKKEACW 363
Query: 237 TILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK----LI 292
TI N++ + + + IP L+ + +T++ A A+ + S+ +
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423
Query: 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL 352
+ G + PL DLLE ++ A+ ++ + E + A + I +
Sbjct: 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN-INENADFIEKAGG 482
Query: 353 VDELLAILAMLSSHQDAIEEI 373
++++ +++ ++I
Sbjct: 483 MEKIFN----CQQNEN--DKI 497
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 6e-20
Identities = 45/299 (15%), Positives = 108/299 (36%), Gaps = 13/299 (4%)
Query: 158 DEDVVTDASRSHLNSLLEKM-SSSLSDQKEAAKELR-LLTKRMPLFRALFGESTDAIPLL 215
++ + ++E + S S Q A ++ R LL+K + +
Sbjct: 10 INNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARF 69
Query: 216 LSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRN 275
+ L + L + + N++ + + + A+P+ I+ + + + +
Sbjct: 70 VEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQ 126
Query: 276 AAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMK-DVASAIFSLCILLENKRR 333
A AL +++ + + + + PL+ L + + L M + A+ +LC
Sbjct: 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186
Query: 334 AVHAGAVRVILRKIMENS----LVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRES 389
+L ++ S L D A+ + D I+ + + G L+ ++
Sbjct: 187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-H 245
Query: 390 TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL 448
+ + NI D +T+ I+ +A +L L + K++A + +
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSPKESIKKEACWTISNI 303
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 2e-18
Identities = 44/305 (14%), Positives = 104/305 (34%), Gaps = 13/305 (4%)
Query: 155 KDTDEDVVTDASRSHLNSLLEKMSSSLSDQKE-AAKELRLLTKRMPLFRALFGESTDAIP 213
+ +E +SS D +E A L + + R + + +P
Sbjct: 94 SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILP 152
Query: 214 LLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETR 273
LL S + + + + NL A+ + +L + +
Sbjct: 153 PLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVL 209
Query: 274 RNAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKR 332
+A AL LS + + G L++LL + A+ ++ + +
Sbjct: 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269
Query: 333 RAV-HAGAVRVILRKIMEN---SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIR 387
+ + + A++ L ++ + S+ E ++ +++ + I+ + + P L+ I+
Sbjct: 270 QVILNCSALQS-LLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL- 327
Query: 388 ESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447
++ R ++ A + N + + E L L S+ + A LE
Sbjct: 328 QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN 387
Query: 448 LNKAA 452
+ +
Sbjct: 388 ILRLG 392
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 4e-13
Identities = 30/211 (14%), Positives = 73/211 (34%), Gaps = 9/211 (4%)
Query: 239 LNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN---KLIIGK 295
+ N +A + +I+ + + + E + +A L + + N +I
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 296 LGAMTPLIDLLEEGH-PLAMKDVASAIFSLCILLENKRRAV-HAGAVRVILRKIMENS-- 351
G + ++ L+ + A + ++ + R V AGAV + + +
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 352 LVDELLAILAMLSSHQD-AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410
+ ++ + L ++ + + + +P LL++ + N L N+C +
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC-RGK 181
Query: 411 TRTREIMEEENANGTLSRLAENGTSRAKRKA 441
+ E + LS L + A
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADA 212
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 39/199 (19%), Positives = 80/199 (40%), Gaps = 14/199 (7%)
Query: 177 MSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLIT 236
M + A + + + + + A+ LL LS + ++
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNC-SALQSLLHLLS----SPKESIKKEACW 298
Query: 237 TILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI--IG 294
TI N++ + + + P LI ++T TR+ AA A+ + ++ S + I +
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358
Query: 295 KLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVD 354
+LG + PL DLL ++ + + ++ L E + + G + I E +D
Sbjct: 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG-INPYCALIEEAYGLD 417
Query: 355 ELLAILAMLSSHQDAIEEI 373
++ L SH++ +EI
Sbjct: 418 KIEF----LQSHEN--QEI 430
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 1e-19
Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 28/222 (12%)
Query: 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIE 271
+ +S L P + T I + R I L+ ++ +
Sbjct: 10 LERAVSMLEAD--HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67
Query: 272 TRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN 330
+R AL +L + NKL + +L + L+ +L++ L K + + +
Sbjct: 68 VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127
Query: 331 KRRAVHAGAVRVILRKIMEN------------------SLVDELLAILAMLSSH-QDAIE 371
+ + A+ + I+ + + L +SS D +
Sbjct: 128 LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK 187
Query: 372 EIGEL-GAIPCLLRIIRESTCERNK-----ENCAAILYNICF 407
+ G I L+ +R + + ENC IL+N+ +
Sbjct: 188 AMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 6e-09
Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 26/177 (14%)
Query: 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDP 228
L LL+ + Q+ LR L + E + +P LL L D
Sbjct: 56 KLLQLLK--VQNEDVQRAVCGALRNLVFEDNDNKLEVAEL-NGVPRLLQVLKQT---RDL 109
Query: 229 GLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV----------------RTGTIET 272
+ + + NLS +D+ K L+ A+ L +++ +
Sbjct: 110 ETKKQITGLLWNLSSNDKLKNLMITE--ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167
Query: 273 RRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327
N L ++S+ ++ K + G + L+ + D + +CIL
Sbjct: 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 41/164 (25%)
Query: 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDL 305
N + A+ +L AA + S + + +L + L+ L
Sbjct: 3 NADMEMTLERAVSMLEAD--HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60
Query: 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSS 365
L+ + + V A+ +L
Sbjct: 61 LKVQNEDVQRAVCGALRNLVF--------------------------------------E 82
Query: 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409
D E+ EL +P LL++++++ K+ +L+N+ D
Sbjct: 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 2e-17
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 75 GLPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNR-----TCPQT---RQVLS 125
F CPI+ E M PV G T++ I R ++ + CPQ +
Sbjct: 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62
Query: 126 HTVLIPNHLVREMISQWCKEHGIE 149
+ LI + +R I K+
Sbjct: 63 KSDLIQDEALRRAIENHNKKRHRH 86
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-15
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Query: 7 EETESCVRKAVELKKELQRLVKAILD---EDDYGGLQVTNEALRVLSCLKDLKLKKPHSF 63
E + + EL L RL+ A + E+ + + + + ++ K
Sbjct: 127 SIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYM 186
Query: 64 KG------GAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTC 117
+P IS E+M +P + +G T+DR I+ L
Sbjct: 187 ADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFN 246
Query: 118 PQTRQVLSHTVLIPNHLVREMISQWCKEHG 147
P TR L+ LIPN ++E+I + E+G
Sbjct: 247 PVTRSPLTQEQLIPNLAMKEVIDAFISENG 276
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 3e-15
Identities = 53/304 (17%), Positives = 111/304 (36%), Gaps = 16/304 (5%)
Query: 156 DTDEDVVTDASRSHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPL 214
D + +++ + S++L Q +A + R L R IP
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 104
Query: 215 LLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRR 274
+S L + + + N++ + + AIP I + +
Sbjct: 105 FVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 275 NAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKD--VASAIFSLCILLENK 331
A AL +++ + + ++ K GA+ PL+ LL + + + ++L L NK
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221
Query: 332 RRAVHAGAVRVILRKIM-------ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLR 384
A AV IL ++ L D AI + + IE + + G +P L++
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281
Query: 385 IIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGI 444
++ +T + NI +T++++ + A L N + +++A
Sbjct: 282 LLG-ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 445 LERL 448
+ +
Sbjct: 340 MSNI 343
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 5e-15
Identities = 35/258 (13%), Positives = 82/258 (31%), Gaps = 16/258 (6%)
Query: 202 RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLL 261
+P L+ L DP +L D I L+ + + +P L
Sbjct: 224 APPLDAVEQILPTLVRLLH----HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 262 IDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASA 320
+ + + A A+ ++ D + GA+ LL K+
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339
Query: 321 IFSLCILLENKRRAV-HAGAV--RVILRKIMENSLVDELLAILAMLSSHQDA--IEEIGE 375
+ ++ +++ + V + G V V + + E + +S I +
Sbjct: 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 399
Query: 376 LGAIPCLLRIIRESTCERNKENCAAILYNIC-----FTDRTRTREIMEEENANGTLSRLA 430
G I L+ ++ + + + + NI + + ++EE + L
Sbjct: 400 CGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458
Query: 431 ENGTSRAKRKANGILERL 448
+ + + ++E+
Sbjct: 459 RHENESVYKASLNLIEKY 476
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-14
Identities = 54/299 (18%), Positives = 110/299 (36%), Gaps = 12/299 (4%)
Query: 161 VVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPL- 219
VV + SLL S ++A L + FR L + AI LL+ L
Sbjct: 139 VVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLA 195
Query: 220 SPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAA 279
P + G L +L T+ NL + + +P L+ + E ++ A
Sbjct: 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255
Query: 280 LFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV-HA 337
+ L+ + ++ K G + L+ LL + AI ++ + + + V A
Sbjct: 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA 315
Query: 338 GAVRVILRKIMEN---SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCER 393
GA+ V ++ N ++ E ++ +++ QD I+++ G +P L+ + +
Sbjct: 316 GALAV-FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG-VLSKADFK 373
Query: 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452
++ A + N + L L ++ + + + +AA
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 17/239 (7%)
Query: 235 ITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI-- 292
+ T + + ++ ++ + + +E++ A A L + + I
Sbjct: 36 LGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 95
Query: 293 IGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCILLENKRRA-VHAGAVRVILRKIMEN 350
I + G + + L + + A A+ ++ + +A V GA+ + +
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 351 SLVDELLAI--LAMLSSHQDA-IEEIGELGAIPCLLRIIRESTCERNK----ENCAAILY 403
A+ L ++ A + + + GAI LL ++ N L
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215
Query: 404 NICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERL-----NKAALIVHT 457
N+C ++ + E TL RL + + + L + ++V
Sbjct: 216 NLC-RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 5e-09
Identities = 35/287 (12%), Positives = 93/287 (32%), Gaps = 40/287 (13%)
Query: 150 LPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGEST 209
L + + D +V+ D+ + ++ +++ E +
Sbjct: 237 LVRLLHHNDPEVLADSC-----WAISYLTDGPNERIEMVVK------------------K 273
Query: 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGT 269
+P L+ L T+ ++ + I N+ + + + A+ + +
Sbjct: 274 GVVPQLVKLLG----ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 329
Query: 270 IETRRNAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL- 327
++ A + +++A + G + L+ +L + K+ A AI +
Sbjct: 330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389
Query: 328 -LENKRRAVHAGAVRVILR-------KIMENSL--VDELLAILAMLSSHQDAIEEIGELG 377
+E VH G + ++ KI++ L + + L + I E G
Sbjct: 390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG 449
Query: 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANG 424
+ + + R + ++ + + ++ E + G
Sbjct: 450 GLDKIEALQRHENESV-YKASLNLIEKYFSVEEEEDQNVVPETTSEG 495
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 4e-14
Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 46/318 (14%)
Query: 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPG 229
L K ++ AA L LT + E +I L+ +
Sbjct: 382 CRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLAR----GGNQS 436
Query: 230 LLEDLITTILNLSIHDENKRLVAE--------------------------------NPLA 257
L ++TT +NL E + ++ E N
Sbjct: 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496
Query: 258 IPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDV 317
L +T + ++ A L ++ L + + + G + L+ + EG +
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHA 556
Query: 318 ASAIFSLCILLENKRRAVHAGAVRVI--LRKIMENSL-----VDELLAILAMLSSHQDAI 370
A+ + I + + ++ VI L +++ + L+A+ + S ++
Sbjct: 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR 616
Query: 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430
+ I + + + + A L N+ ++ + L+ L
Sbjct: 617 QRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLC 674
Query: 431 ENGTSRAKRKANGILERL 448
E+ G L +
Sbjct: 675 EDEDEETATACAGALAII 692
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 7e-12
Identities = 49/327 (14%), Positives = 100/327 (30%), Gaps = 43/327 (13%)
Query: 164 DASRSHLNSLLEKMSSSLSD--QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP 221
A +L+++ S +D + A L L A+ A L
Sbjct: 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR 384
Query: 222 GRADT--DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAA 279
D + + L++ E K + E+ +I L+D R G
Sbjct: 385 FLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTT 444
Query: 280 LFSLSALDSNKLIIGKL---------------------------------GAMTPLIDLL 306
+L + ++ ++ G T L L
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504
Query: 307 EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDEL-----LAILA 361
+ + + +A + ++C L E + + V G V+ +LR +E + + LA +
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564
Query: 362 MLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEEN 421
+ + + + L I LL ++++ L N+ + + + I+ +E
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRII-KEQ 623
Query: 422 ANGTLSRLAENGTSRAKRKANGILERL 448
+ R A L L
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNL 650
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 9/177 (5%)
Query: 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPG 229
L +LL++ ++L + E+ L L R + + +
Sbjct: 585 LLNLLQQDCTAL-ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-----HLY 638
Query: 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289
L + NL + ++ ++ N + L ET A AL ++++
Sbjct: 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK 698
Query: 290 --KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL-LENKRRAVHAGAVRVI 343
+ I+ + L L+ P I ++ E ++ + ++
Sbjct: 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 8e-05
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 170 LNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPG 229
L L E A L ++T + +L + ++ + P
Sbjct: 670 LALLCE--DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA----NPSPA 723
Query: 230 LLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289
+ I ILN+ E + LL + + A L+A +
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783
Query: 290 KLIIGKLGAMTPLID 304
++I A P +
Sbjct: 784 RIIERSDNAEIPDVF 798
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 72.3 bits (176), Expect = 1e-13
Identities = 35/257 (13%), Positives = 84/257 (32%), Gaps = 33/257 (12%)
Query: 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTI 270
+P +++ L + + + +L ++ + IP+L+ +
Sbjct: 49 ELPEVIAMLG----FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK 104
Query: 271 ETRRNAAAALFSLSALDS--NKLIIGKLGAMTPLIDLLEEGHPLAMKD-VASAIFSLCIL 327
E A AL ++S NK+ I + L+ LL + + + + + +++L
Sbjct: 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164
Query: 328 LENKRRAVHAGAVRVILRKIMENSLVDELLA-------------------ILAMLSSHQD 368
K V + I+ +S + L +SS +
Sbjct: 165 DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERS 224
Query: 369 A--IEEIGELGAIPCLLRIIRESTCERNK-----ENCAAILYNICFTDRTRTREIMEEEN 421
+ G + L+ I++ +++ ENC +L N+ + + +
Sbjct: 225 EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284
Query: 422 ANGTLSRLAENGTSRAK 438
A ++ +R
Sbjct: 285 AAPNVANNTGTSPARGY 301
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 45/268 (16%), Positives = 87/268 (32%), Gaps = 41/268 (15%)
Query: 146 HGIELPKPIKDTDEDVVTDA--SRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRA 203
++ KD+D +V + +L+ + + +EAA + T P
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301
Query: 204 LFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD----ENKRLVAENPLAIP 259
+ + + +S L P +LE I NL R A+
Sbjct: 302 ELLFQPEVVRIYISLLKES---KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358
Query: 260 LLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVAS 319
+ D + + A+ AL +L+ NK +IGK A+ L+ L G + + +
Sbjct: 359 AIADLLTNEHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSE 417
Query: 320 AIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAI 379
L I +++ + +A +++ E I
Sbjct: 418 DTVISI------------------------------LNTINEVIAENLEAAKKLRETQGI 447
Query: 380 PCLLRIIR-ESTCERNKENCAAILYNIC 406
L+ I + + E+ A +L I
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQTIW 475
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-13
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
C ISG++ PV+ + F++ +++++ + P T + LS ++
Sbjct: 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-13
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 76 LPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDE-GNRTCPQTRQ-VLSHTVLIPN 132
+P E C I +IMTD VV+ G ++ CI+ L E TCP Q +S LI N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69
Query: 133 HLVREMISQWCKEHG 147
+R+ ++ + E G
Sbjct: 70 KFLRQAVNNFKNETG 84
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 4e-13
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 16/133 (12%)
Query: 18 ELKKELQRLVKAILDEDDYGGLQVTNEALRVLSCLKDLKLKKPHSFKGGAAGDDHLLGLP 77
L + L++ ED +N L L LK + +
Sbjct: 6 SLTAQQSSLIR----EDK------SNAKLWN-EVLASLKDRPASGSPFQLFLSK----VE 50
Query: 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT-VLIPNHLVR 136
F+C E++ P+ + C+ R +CP R L + + N ++
Sbjct: 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQ 110
Query: 137 EMISQWCKEHGIE 149
+++Q +G
Sbjct: 111 TVLNQLFPGYGNG 123
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 1e-12
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 76 LPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHL 134
+ RC I E +++ + CI+++L CP ++ L N +
Sbjct: 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRI 77
Query: 135 VREMISQWCKEH 146
+ E++
Sbjct: 78 LDELVKSLNFAR 89
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 2e-12
Identities = 35/237 (14%), Positives = 73/237 (30%), Gaps = 36/237 (15%)
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITT 237
S Q A ++ + + + I L+ L + + +
Sbjct: 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSP----NQNVQQAAAGA 67
Query: 238 ILNLSIHDENKRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSNKLIIGKL 296
+ NL +L I + +R TG E ++ L++LS+ D K +
Sbjct: 68 LRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA- 126
Query: 297 GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDEL 356
A+ L D + ++ + R++++ +
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSN-----------------------MSREVVDPEVFFNA 163
Query: 357 LAILAMLSSHQDAIEEIGEL-GAIPCLLRIIRESTCERNK-----ENCAAILYNICF 407
L LSS + + G I L+ ++ ENC +L+N+ +
Sbjct: 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 62.5 bits (151), Expect = 1e-10
Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 16/199 (8%)
Query: 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAM 314
L IP + + + + + A + D K + +LG + L+DLL +
Sbjct: 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 315 KDVASAIFSLCIL-LENKRRAVHAGAVR---VILRKIMENSLVDELLAILAMLSSHQDAI 370
+ A A+ +L NK +R +LR+ + +L +L LSS +
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430
EE+ A+P L + N + NA G L L+
Sbjct: 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF---------FNATGCLRNLS 171
Query: 431 ENGTSRAK-RKANGILERL 448
R R +G+++ L
Sbjct: 172 SADAGRQTMRNYSGLIDSL 190
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-09
Identities = 42/287 (14%), Positives = 84/287 (29%), Gaps = 42/287 (14%)
Query: 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIP----LLLSPLS--------PGRAD 225
+ + QK+ L L+ L L DA+P ++ P S R
Sbjct: 98 TGNAEIQKQLTGLLWNLSSTDELKEELI---ADALPVLADRVIIPFSGWCDGNSNMSREV 154
Query: 226 TDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA 285
DP + + + NLS D ++ + I L+ V+ +R + + +
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214
Query: 286 LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILR 345
L + + + K + + N
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNY------------ 262
Query: 346 KIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405
L ++ + AI L ++ +S + E CA L N+
Sbjct: 263 -----------DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311
Query: 406 CFTDRTRTREI----MEEENANGTLSRLAENGTSRAKRKANGILERL 448
+ + + +E ++RL ++G S R +L +
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-08
Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 14/186 (7%)
Query: 235 ITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK---- 290
+ + + + + L ++ T A AL +L+A
Sbjct: 263 DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322
Query: 291 --LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVI----- 343
LI K + + LL+ G+ ++ AS + ++ R + V
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTS 382
Query: 344 ---LRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400
E+ L + +++S ++ + ++ + R S + E
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442
Query: 401 ILYNIC 406
+L ++
Sbjct: 443 LLSDMW 448
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 2e-12
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 69 GDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT- 127
G + L L F C E++ PV + C+QR +CP R L
Sbjct: 68 GPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127
Query: 128 VLIPNHLVREMISQWCKEHG 147
++IPN +++ ++ + +
Sbjct: 128 IMIPNEILQTLLDLFFPGYS 147
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-12
Identities = 54/297 (18%), Positives = 103/297 (34%), Gaps = 77/297 (25%)
Query: 94 VLANGQTFDRPCIQR------WLDEGNRTCPQTRQVLSHTVLIP-NHLVREMISQWCK-- 144
+A + WL+ N P TVL L+ ++ W
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-------ETVLEMLQKLLYQIDPNWTSRS 217
Query: 145 EHGIELPKPIKDT-DEDVVTDASRSHLNSLLEKMSSSLSD--QKEAAK--ELR---LLTK 196
+H + I E S+ + N LL L + +A L LLT
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTT 272
Query: 197 R-MPLFRALFGESTDAIPL--LLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAE 253
R + L +T I L L+P + L+ L+ D + ++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQDLPREVLTT 325
Query: 254 NPLAIPLLIDSVRTG--TIETRRNAAAALFSLSALDSNKL--IIGKLGAMTPLIDLLEEG 309
NP + ++ +S+R G T + ++ ++ +KL II +++LE
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKH----------VNCDKLTTIIES------SLNVLE-- 367
Query: 310 HPLAMKD--VASAIFS---------LCILLENKRRAVHAGAVRVILRKIMENSLVDE 355
P + ++F L ++ + ++ V V++ K+ + SLV++
Sbjct: 368 -PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD----VMVVVNKLHKYSLVEK 419
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 52/327 (15%), Positives = 100/327 (30%), Gaps = 72/327 (22%)
Query: 150 LPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRL----LTKRMPLFRALF 205
+ + D V D +S L+ E++ + + + LRL L+K+ + +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 206 GESTDA-IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDS 264
E L+SP+ P ++ + + RL +N + +
Sbjct: 84 EEVLRINYKFLMSPIK--TEQRQPSMMTRMYIEQRD--------RLYNDNQVFAKYNV-- 131
Query: 265 VRTGTIETRRNAAAALFSLSALDSNKLII--GKLGAMTPLIDLLEEGHPLAMKDV--ASA 320
R R A L L K ++ G LG+ G K
Sbjct: 132 SRLQPYLKLRQA------LLELRPAKNVLIDGVLGS----------G-----KTWVALDV 170
Query: 321 IFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIP 380
L K + + + + + + +L +L L D +
Sbjct: 171 ------CLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 381 CLLRI------IRESTCERNKENCAAILYNIC-------FTDR------TRTREIMEEEN 421
LRI +R + ENC +L N+ F TR +++ + +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 422 ANGTLS-RLAENGTSRAKRKANGILER 447
A T L + + + +L +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLK 309
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-12
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 65 GGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124
G A + E +C I EI+ +PV L T +PC Q +++ + CP R+ +
Sbjct: 1 GSMALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
Query: 125 SHTV-------LIPNHLVREMISQWCKE 145
S + N + +I +
Sbjct: 61 SSWTRYHTRRNSLVNVELWTIIQKHYPR 88
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 8e-12
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
L ++ CPI + + V G F + CI + + + CP ++L L P++
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 136 REMISQ---WCKEHG 147
+ I C G
Sbjct: 75 KREILSLMVKCPNEG 89
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-11
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 79 EFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVRE 137
FRC I E + D + + + CI+RWL E CP R L L+ E
Sbjct: 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEE 81
Query: 138 MISQ 141
+ Q
Sbjct: 82 VTQQ 85
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-11
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI-PNHLVRE 137
C I I+ DPV + F R CI R L CP R T L P
Sbjct: 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82
Query: 138 MISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNS 172
+++ + + P +D +E+V + H++S
Sbjct: 83 ILNS------LMVKCPAQDCNEEVSLEKYNHHVSS 111
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Score = 63.4 bits (153), Expect = 2e-11
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 75 GLPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGN-RTCPQT--RQVLSHTVLI 130
G E CPI+ + P++ FDR IQ +L R CPQ QV+S +
Sbjct: 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236
Query: 131 PNHLVREMISQWCKEHGIELPKPIKDTDEDVV 162
+ ++ + E K DV+
Sbjct: 237 RDPIMELRCKIAKMKESQEQDKRSSQ-AIDVL 267
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 5e-11
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
L ++ CPI + + V G F + CI + + + CP ++L L P++
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74
Query: 136 REMISQ---WCKEHGIELPKPIKDTDE 159
+ I C G ++ ++
Sbjct: 75 KREILSLMVKCPNEGCLHKMELRHLED 101
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-10
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 76 LPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDE-GNRTCPQTRQVLS 125
+P E C I +IMTD VV+ G ++ CI+ L E TCP Q
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 3e-09
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 79 EFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHT-VLIPNHLVR 136
E CPI +++ + + F CI L GN+ CP R+ L L P+
Sbjct: 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 113
Query: 137 EMISQ 141
+IS+
Sbjct: 114 ALISK 118
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-09
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 65 GGAAGDDHLLGLPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQV 123
G + +L L C I + D + TF + CI R + CP+ V
Sbjct: 1 GSSGSSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIV 59
Query: 124 LSHTVLIPN 132
+ T +
Sbjct: 60 VHQTQPLSG 68
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-09
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD-----EGNRTCPQTRQVLSHTVLIPNH 133
E CPI E++ +PV +F R CI + +G CP R L PN
Sbjct: 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78
Query: 134 LVREMI 139
V ++
Sbjct: 79 HVANIV 84
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 8e-09
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 79 EFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV----LIPNH 133
C + G D + +F + CI R+L E ++ CP + T + +
Sbjct: 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPLLNIRSDK 73
Query: 134 LVREMISQ 141
+++++ +
Sbjct: 74 TLQDIVYK 81
|
| >4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 8e-09
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT--VLIPNHLVR 136
E +C I E + V L +F CI W+ CP R+ + L+ ++ +
Sbjct: 64 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKTYSLVLDNCIN 122
Query: 137 EMISQWCKE 145
+M++ E
Sbjct: 123 KMVNNLSSE 131
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 8e-09
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132
C I + PV L F C++ G + C RQ + L
Sbjct: 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDFLDSG 67
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTVLIPNHLVR 136
CPI E++ +PV F + C+ + L++ G CP + ++ L +
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80
Query: 137 EMISQ 141
+++ +
Sbjct: 81 QLVEE 85
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 8/196 (4%)
Query: 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDV 317
P ++ + + R A L L N +L M L+ LE G
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 318 ASAIFSLCILLENKRRAVH-AGAVRVILRKIMENS----LVDELLAILAMLSSHQDAIEE 372
A I + + + V GA+R +LR + ++ V L AI ++ + + +
Sbjct: 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162
Query: 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432
L L+R ++ ++ K A +L N+ + + L L
Sbjct: 163 FLRLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRT 220
Query: 433 GTSRAKRKANGILERL 448
S G L L
Sbjct: 221 EHSPFHEHVLGALCSL 236
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 6e-06
Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 16/249 (6%)
Query: 172 SLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLL 231
+ + ++ +++ A + L L + M + LL+ GL
Sbjct: 45 AGEAEQAADQQEREGALELLADLCENMDNAADF--CQLSGMHLLVGRY---LEAGAAGLR 99
Query: 232 EDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALFSLSA-LDSN 289
I S + + A+ L+ + R A A+ L ++
Sbjct: 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 159
Query: 290 KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL-LENKRRAVHAGAVRVILRKIM 348
L +L + L+ +++ A + +L + E+K G V+ ++ +
Sbjct: 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR 219
Query: 349 -ENSLVDE--LLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKEN-----CAA 400
E+S E L A+ ++++ + E E L R ++++E
Sbjct: 220 TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCE 279
Query: 401 ILYNICFTD 409
L CF+
Sbjct: 280 KLLQTCFSS 288
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-08
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-----GNRTCPQTRQVLSHTVLIPNH 133
E CPI E++T P+ L G +F + C+ + G +CP R + PN
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78
Query: 134 LVREMI 139
V ++
Sbjct: 79 HVANIV 84
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-08
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125
+ +++C ++ P G F C+ L + C ++ +
Sbjct: 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-08
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE------GNRTCPQTRQVLSHTVLIPN 132
E CPI E++T+P+ L G + R CI E G +CP S L N
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71
Query: 133 HLVREMI 139
+ ++
Sbjct: 72 QHLANIV 78
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQ---------VLSH 126
L ++ C ++ P G + C+ L G + C +L
Sbjct: 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87
Query: 127 TVLIPNHLVREMISQ---WCKEHG 147
+ P++ R + C G
Sbjct: 88 SSAFPDNAARREVESLPAVCPSDG 111
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 6e-07
Identities = 45/271 (16%), Positives = 95/271 (35%), Gaps = 43/271 (15%)
Query: 173 LLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGL 230
L ++++SS L D++ A + L+ L+K+ +R G A+ L+ L R+D++ +
Sbjct: 26 LCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGIQ--AMEHLIHVLQTDRSDSE--I 78
Query: 231 LEDLITTILNLSIHDENK------------------RLVAENPLAIPLLIDSVRTGTIET 272
+ + T+ N+ +DE + + + + LL+ +
Sbjct: 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV 138
Query: 273 RRNAAAALFSLSAL---DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE 329
R L SL ++I+ ++ L+DLL + + D + +L
Sbjct: 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG 198
Query: 330 NKRRAV-HAGAVRVILRKIMENSLV-------DELLAILAMLSSHQDAIEEIGELGAIPC 381
++ V A +L I E D L+ + +L ++ E I
Sbjct: 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258
Query: 382 LLRIIREST-----CERNKENCAAILYNICF 407
+ + N +L +
Sbjct: 259 MKPWFEVGDENSGWSAQKVTNLHLMLQLVRV 289
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-07
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMI 139
FRC I + +PVV F C C Q + + P + +
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQP-TGGIFNPAKELMAKL 73
Query: 140 SQWCKEHG 147
+ G
Sbjct: 74 QKSGPSSG 81
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-07
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 62 SFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQ 119
S G A + L E CPI +I+ PV + G F CI + + G CP
Sbjct: 3 SGSSGMASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62
Query: 120 TRQ 122
+
Sbjct: 63 CKT 65
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-06
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 65 GGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRT--CPQ 119
G + L L E C + E + +PV++ G F + CI RW ++ R CP
Sbjct: 1 GSSGSSGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 79 EFRCPISGEIMTDPVVLAN-------GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
CPI + ++ V G F C++ L TCP R+ ++H P
Sbjct: 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 61
Query: 132 NHL 134
++
Sbjct: 62 IYI 64
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-06
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 62 SFKGGAAGDDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQ 119
S G A + L E CPI +I+ PV + G F CI + + G CP
Sbjct: 3 SGSSGMASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 79 EFRCPISGEIMTDPVVLAN-------GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
CPI + ++ V G F C++ L TCP R+ ++H P
Sbjct: 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 68
Query: 132 NHL 134
++
Sbjct: 69 IYI 71
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 12/53 (22%), Positives = 17/53 (32%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
C I E D + G C+ W + + CP R + T I
Sbjct: 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-05
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 79 EFRCPISGEIMTDPVVLAN-------GQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126
CPI + ++ V G F C++ L TCP R+ ++H
Sbjct: 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.97 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.96 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.96 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.96 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.96 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.95 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.95 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.94 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.94 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.94 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.94 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.94 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.93 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.93 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.93 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.92 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.92 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.92 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.92 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.91 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.91 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.9 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.9 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.89 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.89 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.88 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.88 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.85 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.83 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.82 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.82 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.82 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.79 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.79 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.71 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.69 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.69 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.61 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.57 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.56 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.54 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.54 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.54 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.53 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.52 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.52 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.51 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.51 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.5 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.5 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.5 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.5 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.5 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.5 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.49 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.47 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.47 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.46 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.45 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.44 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.43 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.42 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.41 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.4 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 99.4 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 99.38 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.38 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 99.36 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.36 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.33 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 99.33 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 99.32 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 99.31 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 99.29 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.23 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.23 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.22 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 99.22 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 99.21 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 99.21 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 99.21 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 99.21 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 99.2 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 99.2 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 99.2 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.17 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 99.16 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.12 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 99.12 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 99.1 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.1 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.09 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.08 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.05 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 99.04 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 99.0 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.98 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.93 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.93 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.9 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.9 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.89 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.89 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.88 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.83 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.82 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.78 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 98.78 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.75 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.72 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 98.7 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 98.64 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.62 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 98.59 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.58 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.55 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.49 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.46 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.46 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.44 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.37 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 98.31 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.31 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.25 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 98.16 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.16 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.11 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.11 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.07 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.05 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.93 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 97.93 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.9 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 97.87 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.86 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.86 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.81 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.81 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.65 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.56 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.54 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.47 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.21 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.11 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 97.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.74 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 96.74 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 96.57 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 96.57 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 96.14 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 96.12 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.03 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.55 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.49 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 94.91 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 94.86 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.51 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.43 | |
| 1weo_A | 93 | Cellulose synthase, catalytic subunit (IRX3); stru | 94.18 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.18 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 94.04 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.03 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 93.77 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 93.45 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 93.43 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 93.17 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 92.58 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 92.38 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 92.03 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 91.91 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 91.8 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 91.66 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 90.91 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 90.54 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 90.53 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 90.35 | |
| 2cs3_A | 93 | Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s | 90.13 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 89.21 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 89.2 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 89.2 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 89.09 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 87.98 | |
| 2ko5_A | 99 | Ring finger protein Z; lassa fever virus-Z, negati | 87.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 87.6 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 86.97 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 86.1 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 85.94 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 85.81 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 85.48 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 85.11 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 84.2 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 83.72 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 82.94 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 82.13 | |
| 3mjh_B | 34 | Early endosome antigen 1; protein-zinc finger comp | 81.57 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 81.25 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 80.21 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=269.68 Aligned_cols=269 Identities=18% Similarity=0.175 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCC-------CCCCChhHHHHHHHHHHhcccCch-hhhhhhc
Q 012677 182 SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPG-------RADTDPGLLEDLITTILNLSIHDE-NKRLVAE 253 (458)
Q Consensus 182 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~ 253 (458)
+.+..|++.|.+++.+ +++|..|.+ .|+++.|+.+|... ....++.++..|+++|.||+.+++ ++..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445799999999986 899999999 99999999999521 011246789999999999998876 6777766
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--CcchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhcc-ccc
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL--DSNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCI-LLE 329 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~-~~~ 329 (458)
.+|++|.|+.+|++++.++++.|+++|.||+.. ++++..|++.|+|++|+.+| +++++.+++.|+.+|+||+. .++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 666799999999999999999999999999975 46899999999999999975 56788999999999999999 557
Q ss_pred chhHHH-hhCcHHHHHHHhccC--C----cHHHHHHHHHHhcC----CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 330 NKRRAV-HAGAVRVILRKIMEN--S----LVDELLAILAMLSS----HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 330 ~~~~i~-~~g~v~~Lv~ll~~~--~----~~~~a~~~L~~La~----~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
++..++ ..|+++.|+++|.++ . +++.|+++|.+|+. +++++..+++.|+++.|+++|+++ +..++++|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHH
Confidence 888888 689999999999865 2 68899999999995 899999999999999999999965 59999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++|+||+.+++.. +..+.+.|++++|++|+.++++.+++.|+++|++|+...+.
T Consensus 284 ~~aL~nLa~~~~~~-~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 284 CGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHTSSCHHH-HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999876554 35556699999999999999999999999999999987554
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=269.25 Aligned_cols=279 Identities=17% Similarity=0.188 Sum_probs=240.5
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
.++.+|+.|. ++++.|..|+..|++++.+++.++..+.+ .|+||.|+.+|+++ ++.++..|+++|.||+.+ ++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence 5788999995 67889999999999999888888988998 99999999999975 889999999999999987 77
Q ss_pred hhhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh--------cC--------
Q 012677 247 NKRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE--------EG-------- 309 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~-------- 309 (458)
++..+++.| ++|.|+.+|+ +++.++++.|+++|.||+.+++++..+++ |+|++|+.+|. ++
T Consensus 78 ~k~~i~~~G-~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 78 NKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHTT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHcC-CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence 999999885 9999999999 88999999999999999999889999999 99999999993 22
Q ss_pred ChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhcc--------CCcHHHHHHHHHHhcCCH-------------
Q 012677 310 HPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIME--------NSLVDELLAILAMLSSHQ------------- 367 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~--------~~~~~~a~~~L~~La~~~------------- 367 (458)
++.++..|+++|+||+.+++++..+++. |+++.|+.+|.+ ....+.++.+|.+|+...
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 3556679999999999998889999997 999999999985 257889999999997421
Q ss_pred --------------------------------------HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 368 --------------------------------------DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 368 --------------------------------------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+.+.+++.|+++.|+.+|.++.++.+++.|+++|.||+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 122334566789999999998777999999999999999876
Q ss_pred chh---H-HHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 410 RTR---T-REIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 410 ~~~---~-~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
... . +.++.+.|+++.|++|+.++++++++.|+++|++|+...+.
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~ 364 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH
Confidence 432 1 34555689999999999999999999999999999986543
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=267.91 Aligned_cols=265 Identities=18% Similarity=0.183 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCC-----C--CCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCC
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP-----G--RADTDPGLLEDLITTILNLSIHDE-NKRLVAENPL 256 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~--~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~ 256 (458)
.+|++.|.+++. ++++|..|.+ .|++++|+.+|.. + ....++.++..|+++|.||+.+++ ++..+...+|
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 389999999977 4899999999 9999999999942 0 001246789999999999998876 5666655666
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--CcchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHHHhcc-cccchh
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSAL--DSNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIFSLCI-LLENKR 332 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~-~~~~~~ 332 (458)
++|.|+.+|++++.++++.|+++|.||+.. ++++..|++.|+|++||.+| +++++.+++.|+.+|+||+. .++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 799999999999999999999999999984 46889999999999999975 55788999999999999999 668888
Q ss_pred HHH-hhCcHHHHHHHhccC--C----cHHHHHHHHHHhc----CCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 333 RAV-HAGAVRVILRKIMEN--S----LVDELLAILAMLS----SHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 333 ~i~-~~g~v~~Lv~ll~~~--~----~~~~a~~~L~~La----~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
.++ ..|+++.|+++|.++ . +++.|+++|.+|+ .+++++..+++.|+++.|+.+|+++ +..++++|+++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~a 402 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGT 402 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHH
Confidence 888 689999999999865 2 6889999999998 4899999999999999999999965 48999999999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
|+||+.++++.. ..+.+.|++++|++|+.++++.+++.|+++|++|+...+
T Consensus 403 L~nLa~~~~~~~-~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 403 LWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHSSCHHHH-HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHcCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999998766543 555568999999999999999999999999999997653
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=266.38 Aligned_cols=278 Identities=19% Similarity=0.242 Sum_probs=237.2
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--c
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--D 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--~ 245 (458)
.++.||+.|. ++.+.|..|+..|.+++..++.++..|.+ .|+||.|+.+|.++ +..+++.|+++|.||+.+ +
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHP----KKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGGCS----SHHHHHHHHHHHHHHTSSSCH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHCCC----CHHHHHHHHHHHHHHHccCCH
Confidence 6889999995 56788999999999999988999999999 99999999999985 899999999999999985 7
Q ss_pred hhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh-----------------
Q 012677 246 ENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE----------------- 307 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----------------- 307 (458)
+++..+++.| ++|.|+.+|++ ++.++++.|+++|.||+.+++++..|++ |+|++|+.++.
T Consensus 124 ~nk~~I~~~G-aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 124 DNKIAIKNCD-GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHcC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 7999999985 99999999998 5789999999999999999999999996 57999999872
Q ss_pred -cCChHHHHHHHHHHHHhccccc-chhHHHhh-CcHHHHHHHhcc------C--CcHHHHHHHHHHhcCCHH--------
Q 012677 308 -EGHPLAMKDVASAIFSLCILLE-NKRRAVHA-GAVRVILRKIME------N--SLVDELLAILAMLSSHQD-------- 368 (458)
Q Consensus 308 -~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~-g~v~~Lv~ll~~------~--~~~~~a~~~L~~La~~~~-------- 368 (458)
..++.++.+|+++|+||+...+ +|..+++. |+++.|+.+|.+ . ..++.|+++|.||+..-.
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 1256899999999999999875 58888885 778899999974 1 478999999999997521
Q ss_pred ------------------HHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc---hhHHHHHHhhhhhHHHH
Q 012677 369 ------------------AIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR---TRTREIMEEENANGTLS 427 (458)
Q Consensus 369 ------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~~~~~~g~~~~L~ 427 (458)
+.+.+.+.++|+.|+.+|+.+.++.+++.|+++|.|||.+.. ...+.++.+.++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 111223345678899999876679999999999999998653 22344666688999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 428 RLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 428 ~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
+|+.++++.+++.|+++|++|+....
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999999997654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=261.89 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=242.4
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCc-----------------------------hhh---hhhhhccCCh
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMP-----------------------------LFR---ALFGESTDAI 212 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~~g~i 212 (458)
+.+.++.||+.|+ ++...+..|+..|.+++..++ .++ ..+.+ .|++
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-aGaV 497 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-EGIT 497 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-TTHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-CcCH
Confidence 3468999999995 567889999999999998543 122 56778 8999
Q ss_pred HHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH
Q 012677 213 PLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI 292 (458)
Q Consensus 213 ~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 292 (458)
|.|+.+|+++ ++.+++.|+++|.|++.+++++..+++.| ++|.|+.+|.+++...++.|+++|.+|+.+.+....
T Consensus 498 p~LV~LL~s~----s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G-aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 498 TALCALAKTE----SHNSQELIARVLNAVCGLKELRGKVVQEG-GVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HHHHHHHTCC----CHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 9999999985 89999999999999999988999999985 999999999999999999999999999876544333
Q ss_pred hh---ccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 293 IG---KLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 293 i~---~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
+. ..|+|++|+.+|.++ +...+..|+++|.||+..+ +++..++++|+++.|+.+|.++ .++..|+++|+||+.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 32 257999999999866 4445578999999999975 6788899999999999999876 689999999999999
Q ss_pred CHHHHHHHHh-cCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHH
Q 012677 366 HQDAIEEIGE-LGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGI 444 (458)
Q Consensus 366 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~ 444 (458)
+++.+..+++ .|+++.|+.++... +..++..|+++|++|+.+++...+.++...|+++.|+.|+.+++..+++.|+++
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999986 78999999999964 599999999999999997665555666548999999999999999999999999
Q ss_pred HHHHHhhH
Q 012677 445 LERLNKAA 452 (458)
Q Consensus 445 L~~l~~~~ 452 (458)
|.|+....
T Consensus 732 L~NL~~~s 739 (810)
T 3now_A 732 ILNMINAG 739 (810)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99998643
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=249.57 Aligned_cols=282 Identities=20% Similarity=0.210 Sum_probs=235.1
Q ss_pred hhhhhhhhHHhhcCC-------------cHHHHHHHHHHHHHHhhCchhhhhhhhccCCh----------HHHhhccCCC
Q 012677 166 SRSHLNSLLEKMSSS-------------LSDQKEAAKELRLLTKRMPLFRALFGESTDAI----------PLLLSPLSPG 222 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~~-------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i----------~~Lv~lL~~~ 222 (458)
+.+.++.||+.|..+ .+.+.+|+++|.+++..++.......+ .|++ +.+++++.+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRRE-IRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHH-HHHHHHHHHhhhhhHHHHHHHHhh
Confidence 446789999999531 478899999999999998888777777 6777 6677777765
Q ss_pred CCCCC----------hhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 012677 223 RADTD----------PGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-----------GTIETRRNAAAALF 281 (458)
Q Consensus 223 ~~~~~----------~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~ 281 (458)
....+ ...+..|+++|.|++.++++|..+++.| +++.|+.+|.. .+..++..|+++|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 31111 1223499999999999999999999985 99999999952 24678999999999
Q ss_pred HhhccCc-chhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccc--ccchhHHHhhCcHHHHHHHhc-cC--CcHH
Q 012677 282 SLSALDS-NKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL--LENKRRAVHAGAVRVILRKIM-EN--SLVD 354 (458)
Q Consensus 282 ~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~Lv~ll~-~~--~~~~ 354 (458)
||+.+++ ++..+.. .|+||+|+.+|++++++++..|+++|.||+.. ++++..+++.|++++|+++|. ++ .+++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 9998776 5666654 67799999999999999999999999999985 468899999999999999864 33 5788
Q ss_pred HHHHHHHHhcC-CHHHHHHHH-hcCCHHHHHHHHhhcCCh---hHHhHHHHHHHHHhc---cCchhHHHHHHhhhhhHHH
Q 012677 355 ELLAILAMLSS-HQDAIEEIG-ELGAIPCLLRIIRESTCE---RNKENCAAILYNICF---TDRTRTREIMEEENANGTL 426 (458)
Q Consensus 355 ~a~~~L~~La~-~~~~~~~i~-~~g~i~~Lv~ll~~~~~~---~~~~~a~~~L~~L~~---~~~~~~~~~~~~~g~~~~L 426 (458)
.++.+|++|+. +++++..|+ ..|+++.|+++|....+. .+++.|+++|.||+. ..++. +..+.+.|+++.|
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~G~i~~L 384 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQTL 384 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH-HHHHHHcccHHHH
Confidence 99999999999 889999998 799999999999965422 489999999999997 45443 4666679999999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 427 SRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 427 ~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+.++.+++..+++.|+++|++|+.
T Consensus 385 v~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 385 LQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCChHHHHHHHHHHHHHHc
Confidence 999999999999999999999994
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=248.67 Aligned_cols=284 Identities=18% Similarity=0.178 Sum_probs=238.1
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+.++.||+.|+ +++..+..|+..|.+++.+++.++..|.+ .|+|+.|+.+|... .+.++++.|+++|.||+.+
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~-~G~i~~Lv~lL~~~---~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR-QNGIREAVSLLRRT---GNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHHHTTC---CCHHHHHHHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHhhC---CCHHHHHHHHHHHHHHhcC
Confidence 3468999999996 56788999999999999988999999999 99999999999832 3889999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHh--------cC--------CHHHHHHHHHHHHHhhccCcchhHhhcc-CchHHHHHHhh
Q 012677 245 DENKRLVAENPLAIPLLIDSVR--------TG--------TIETRRNAAAALFSLSALDSNKLIIGKL-GAMTPLIDLLE 307 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~ 307 (458)
++++..+++ | ++|.|+.+|. ++ +.++...|+++|.||+.+++++..+.+. |+|++|+.+|.
T Consensus 118 ~~~~~~i~~-g-~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 118 DELKEELIA-D-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp SSTHHHHHH-H-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHhHHHHHh-c-cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 888988888 4 9999999993 22 3566679999999999988889999997 99999998886
Q ss_pred cC------------------------------------------------------------------------------
Q 012677 308 EG------------------------------------------------------------------------------ 309 (458)
Q Consensus 308 ~~------------------------------------------------------------------------------ 309 (458)
++
T Consensus 196 ~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
T 1xm9_A 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275 (457)
T ss_dssp HHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred hhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence 41
Q ss_pred ---------------------ChHHHHHHHHHHHHhcccccc------hhHHHhhCcHHHHHHHhccC--CcHHHHHHHH
Q 012677 310 ---------------------HPLAMKDVASAIFSLCILLEN------KRRAVHAGAVRVILRKIMEN--SLVDELLAIL 360 (458)
Q Consensus 310 ---------------------~~~~~~~a~~aL~~L~~~~~~------~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L 360 (458)
++.+++.|+++|.||+..... +..+.+.|++|.|+++|.++ .++..|+++|
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL 355 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHH
Confidence 234566788999999875532 22234589999999999987 6889999999
Q ss_pred HHhcCCHHHHHHHHhcCCHHHHHHHHhhcCC-----hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-C
Q 012677 361 AMLSSHQDAIEEIGELGAIPCLLRIIRESTC-----ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-T 434 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~ 434 (458)
.+|+.+++++..|. .|+++.|+++|..++. +++...++++|.+|..+++.. ...+.+.|+++.|+.|+.++ +
T Consensus 356 ~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~-~~~i~~~g~l~~L~~L~~~~~~ 433 (457)
T 1xm9_A 356 SNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL-AKQYFSSSMLNNIINLCRSSAS 433 (457)
T ss_dssp HHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHH-HHHHCCHHHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHHcCCCc
Confidence 99999988887665 5789999999996532 368889999999999877654 45566789999999999999 9
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhc
Q 012677 435 SRAKRKANGILERLNKAALIVHT 457 (458)
Q Consensus 435 ~~~~~~A~~~L~~l~~~~~~~~~ 457 (458)
++++++|.++|.++..+.+.+.+
T Consensus 434 ~~i~~~A~~~L~~~~~~~~l~~~ 456 (457)
T 1xm9_A 434 PKAAEAARLLLSDMWSSKELQGV 456 (457)
T ss_dssp HHHHHHHHHHHHTTSSSTTCSSC
T ss_pred HHHHHHHHHHHHHHHcchhhhcc
Confidence 99999999999999877766543
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=239.60 Aligned_cols=242 Identities=18% Similarity=0.195 Sum_probs=211.6
Q ss_pred hhhhhhhhHHhhcC------------CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHH
Q 012677 166 SRSHLNSLLEKMSS------------SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLED 233 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~------------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 233 (458)
+.+.++.|+..|.. ++..|..|+..|.+++..++.++..+....|+||.|+.+|.++ +.++++.
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~----~~~v~~~ 146 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE----SEDLQQV 146 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS----CHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC----CHHHHHH
Confidence 34678888888831 2567899999999999988888888865246699999999875 8899999
Q ss_pred HHHHHHhcccC--chhhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhc-cCcchhHhh-ccCchHHHHHHhhc
Q 012677 234 LITTILNLSIH--DENKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSA-LDSNKLIIG-KLGAMTPLIDLLEE 308 (458)
Q Consensus 234 a~~~L~~ls~~--~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~ 308 (458)
|+++|.||+.+ +++|..+++.| ++|.|+.+| ++++.++++.|+++|.||+. .++++..|+ ..|+|+.|+.+|.+
T Consensus 147 A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~ 225 (354)
T 3nmw_A 147 IASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225 (354)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc
Confidence 99999999985 46888888874 999999975 66789999999999999998 667888888 69999999999987
Q ss_pred CCh----HHHHHHHHHHHHhcc----cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcC
Q 012677 309 GHP----LAMKDVASAIFSLCI----LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELG 377 (458)
Q Consensus 309 ~~~----~~~~~a~~aL~~L~~----~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g 377 (458)
+++ ++++.|+++|+||+. .++++..+++.|+++.|+++|.++ .+++.|+++|.+|+. +++++..+++.|
T Consensus 226 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 305 (354)
T 3nmw_A 226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305 (354)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 754 589999999999996 677898999999999999999987 578999999999995 899999999999
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRT 413 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~ 413 (458)
+|+.|+++|++. ++.+++.|+++|.||+.+.+.++
T Consensus 306 ~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 306 AVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999965 59999999999999999887654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=247.45 Aligned_cols=278 Identities=14% Similarity=0.135 Sum_probs=242.5
Q ss_pred hhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.||+.|. +++..|.+|+++|.+++..++.++..+++ .|+||.|+.+|+++ +.++++.|+++|.||+.+
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~-~GaIp~Lv~lL~s~----~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP----HAHISEQAVWALGNIAGD 173 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC
Confidence 468999999995 34678999999999999999999999999 99999999999985 899999999999999987
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcchhHhh-ccCchHHHHHHhhcCChHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSNKLIIG-KLGAMTPLIDLLEEGHPLAMKDV 317 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a 317 (458)
.+ .+..+... |+++.|+.+|..++ ...+..++++|.+++.+......+. ..|+++.|+.+|.+++++++..|
T Consensus 174 ~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 174 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 65 56677776 59999999998653 4678899999999998876655444 37899999999999999999999
Q ss_pred HHHHHHhcccccchh-HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChh
Q 012677 318 ASAIFSLCILLENKR-RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCER 393 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~ 393 (458)
+++|.+|+...+++. .+++.|+++.|+++|.++ .++..++.+|.+|+. ++..+..+++.|+++.|+.+|.++ ++.
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~ 331 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTN 331 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHH
Confidence 999999998776554 467889999999999877 578899999999987 778889999999999999999965 499
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++..|+++|.||+.+++... ..+.+.|+++.|+.++.+++..+++.|+++|.+++...
T Consensus 332 v~~~A~~aL~nl~a~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCcHHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 99999999999999887654 55556899999999999999999999999999998643
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=256.86 Aligned_cols=275 Identities=16% Similarity=0.149 Sum_probs=234.5
Q ss_pred hhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS-S--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.++.+++.|+ + +.+++..|++.|..|+.+ +..+..++...|+++.|+.+|++. +..++..|+++|.||+.+.
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~----d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGG----NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTT----CGGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCC----ChHHHHHHHHHHHHHcCCc
Confidence 4566777774 3 678999999999999985 666666664379999999999874 8899999999999999854
Q ss_pred h------------------------------hh---hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhH
Q 012677 246 E------------------------------NK---RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI 292 (458)
Q Consensus 246 ~------------------------------~~---~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 292 (458)
+ ++ ..+++. |++|.|+.+|+++++.+++.|+++|.||+.+++++..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCGLKELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 12 566776 5999999999999999999999999999998889999
Q ss_pred hhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHH---HhhCcHHHHHHHhccC-C-c-HHHHHHHHHHhcCC
Q 012677 293 IGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRA---VHAGAVRVILRKIMEN-S-L-VDELLAILAMLSSH 366 (458)
Q Consensus 293 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i---~~~g~v~~Lv~ll~~~-~-~-~~~a~~~L~~La~~ 366 (458)
+++.|+|++|+.+|.++++..++.|+++|.+|+.+.+....+ ...|++++|+++|.++ . . +..|+.+|.||+..
T Consensus 532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999765543322 1247999999999865 3 2 45799999999995
Q ss_pred -HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 367 -QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 367 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
++++..++++|+++.|+.+|.+. ++.+++.|+++|+||+.+++ ....++...|.+++|+.|+.+.+..+++.|+++|
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 78999999999999999999965 59999999999999999765 3445554478999999999999999999999999
Q ss_pred HHHHhh
Q 012677 446 ERLNKA 451 (458)
Q Consensus 446 ~~l~~~ 451 (458)
++|+..
T Consensus 690 anLt~~ 695 (810)
T 3now_A 690 AIITSV 695 (810)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 999974
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=244.34 Aligned_cols=279 Identities=14% Similarity=0.134 Sum_probs=243.8
Q ss_pred hhhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc
Q 012677 166 SRSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI 243 (458)
Q Consensus 166 ~~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~ 243 (458)
+.+.++.||+.|. +++..|.+|++.|.+++..++..+..+.+ .|+||.|+.+|.++ +..+++.|+++|.||+.
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~s~----~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP----HAHISEQAVWALGNIAG 191 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhc
Confidence 3468999999995 34778999999999999998889999999 99999999999985 89999999999999998
Q ss_pred Cc-hhhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcchhHhh-ccCchHHHHHHhhcCChHHHHH
Q 012677 244 HD-ENKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSNKLIIG-KLGAMTPLIDLLEEGHPLAMKD 316 (458)
Q Consensus 244 ~~-~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~ 316 (458)
+. +++..+... |+++.|+.+|..++ ......++++|.+++.+......+. ..|++|.|+.+|.+++++++..
T Consensus 192 ~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~ 270 (529)
T 3tpo_A 192 AGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 270 (529)
T ss_dssp TCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred cCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHH
Confidence 75 467777777 49999999997653 5678899999999998876654444 4789999999999999999999
Q ss_pred HHHHHHHhcccccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCCh
Q 012677 317 VASAIFSLCILLENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCE 392 (458)
Q Consensus 317 a~~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~ 392 (458)
|+++|.+|+...+++ ..+++.|+++.|+.+|.++ .++..++.+|.+|+. ++..+..+++.|+++.|+.+|.++ ++
T Consensus 271 a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~ 349 (529)
T 3tpo_A 271 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT 349 (529)
T ss_dssp HHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SH
T ss_pred HHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CH
Confidence 999999999877654 4567889999999999877 578899999999987 778899999999999999999965 49
Q ss_pred hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 393 RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 393 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.++..|+++|.||+.+++... ..+.+.|+++.|+.++.+++..++..|+++|.+++...
T Consensus 350 ~i~~~a~~aL~nl~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 350 NIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccHHHH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999887654 55556899999999999999999999999999998653
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-28 Score=246.19 Aligned_cols=282 Identities=19% Similarity=0.178 Sum_probs=230.0
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhh-CchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKR-MPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++|+.||+.|. ++...|..|+.+|.+++.. ++.++..|.+ .|+|+.|+.+|+++ .+.++++.|+.+|.||+.+
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~-~GaIp~LV~LL~s~---~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN-CDGVPALVRLLRKA---RDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH-TTHHHHHHHHHHHC---CSHHHHHHHHHHHHHHTTS
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH-cCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCC
Confidence 468999999995 5688999999999999985 6899999999 99999999999863 3678999999999999999
Q ss_pred chhhhhhhcCCCCHHHHHHHHh------------------cCCHHHHHHHHHHHHHhhccCcc-hhHhhc-cCchHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVR------------------TGTIETRRNAAAALFSLSALDSN-KLIIGK-LGAMTPLID 304 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~-~g~i~~Lv~ 304 (458)
++++..|+. + ++|.|+.+|. ..+.+++++|+++|.||+.++++ +..|++ .|+|+.||.
T Consensus 165 ~~~k~~I~~-~-alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~ 242 (584)
T 3l6x_A 165 DSIKMEIVD-H-ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242 (584)
T ss_dssp GGGHHHHHH-H-THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHH
T ss_pred chhhHHHHh-c-cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHH
Confidence 999999996 4 6999999872 12579999999999999987754 777777 566667777
Q ss_pred Hhhc--------------------------------------------------------------------------CC
Q 012677 305 LLEE--------------------------------------------------------------------------GH 310 (458)
Q Consensus 305 lL~~--------------------------------------------------------------------------~~ 310 (458)
+|++ .+
T Consensus 243 ~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~ 322 (584)
T 3l6x_A 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKT 322 (584)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCC
Confidence 6542 13
Q ss_pred hHHHHHHHHHHHHhcccc-----cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHH
Q 012677 311 PLAMKDVASAIFSLCILL-----ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLL 383 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~-----~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv 383 (458)
+.++++|+++|.||+... .++..+.+.|+++.|++||.++ .+++.++++|.||+.++.++..| ..|+++.||
T Consensus 323 ~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV 401 (584)
T 3l6x_A 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLV 401 (584)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHH
Confidence 445556666666665543 1223344579999999999877 68899999999999988888766 778999999
Q ss_pred HHHhhcC-------ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC--CHHHHHHHHHHHHHHHhhHhh
Q 012677 384 RIIREST-------CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG--TSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 384 ~ll~~~~-------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.+|.++. +..+...|+++|.||+..++... ..+.+.|+++.|+.|+.++ ++.+++.|+++|.+|..+.+.
T Consensus 402 ~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~-~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA-KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp HTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 9998652 36788999999999998877654 5555699999999999886 889999999999999987766
Q ss_pred hh
Q 012677 455 VH 456 (458)
Q Consensus 455 ~~ 456 (458)
+.
T Consensus 481 r~ 482 (584)
T 3l6x_A 481 RK 482 (584)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=242.13 Aligned_cols=287 Identities=16% Similarity=0.159 Sum_probs=248.2
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC-CChhHHHHHHHHHHhccc
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-TDPGLLEDLITTILNLSI 243 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~a~~~L~~ls~ 243 (458)
+.++++.|++.|. ++...+..|+++|.+++.+++.+|..+.+ .|+++.|+.+|...... .....+..++++|.+++.
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 3468999999985 66889999999999999999999999999 99999999999865211 123567899999999998
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+......+....+++|.|+.+|.+++.+++..|+++|.+|+...++ ...+...|+++.|+.+|.+++..++..|+.+|.
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 8776555544446999999999999999999999999999987755 556778999999999999999999999999999
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
||+...+ .+..+++.|+++.|+.+|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+.+|.++ +..++..|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHH
Confidence 9987654 667789999999999999977 678999999999988 788889999999999999999975 49999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++|.|++.+........+.+.|++++|+.|+.+.++.+...+..+|.++.+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 99999999865544445555699999999999999999999999999999876643
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=239.77 Aligned_cols=287 Identities=16% Similarity=0.161 Sum_probs=247.7
Q ss_pred hhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCC-CChhHHHHHHHHHHhccc
Q 012677 166 SRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRAD-TDPGLLEDLITTILNLSI 243 (458)
Q Consensus 166 ~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~~~a~~~L~~ls~ 243 (458)
+.++++.|++.|+ ++..++..|+++|.+++.+++.+|..+.+ .|+++.|+.+|...... .....+..++++|.|++.
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 3468999999995 66889999999999999999999999999 99999999999875211 123567889999999998
Q ss_pred CchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 244 HDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 244 ~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+......+....+++|.|+.+|.+++.+++..|+++|.+|+...++ ...+.+.|+++.|+.+|.+++..++..++.+|.
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 8766555554446999999999999999999999999999987755 556677999999999999999999999999999
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
||+...+ .+..+++.|+++.|+.+|.++ .+++.|+++|.+|+. +++.+..+.+.|+++.|+.++.++ +..++..|
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 378 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEA 378 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHH
Confidence 9987665 566789999999999999877 688999999999988 788899999999999999999965 49999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+++|.|++.+........+.+.|++++|+.|+.+.++.+...+..+|.++.+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 434 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 99999999876544445556689999999999999999999999999999876653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=213.46 Aligned_cols=239 Identities=18% Similarity=0.267 Sum_probs=215.6
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-C
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSAL-D 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~ 287 (458)
|+++.|+.+|.+. +.+++..|+++|.+++.+.+ ++..+.+. |+++.|+.+|++++.+++..|+++|.+|+.. +
T Consensus 2 ~~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 2 NDVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp CHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred CcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 6789999999985 78999999999999998776 88888887 4999999999999999999999999999987 6
Q ss_pred cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 288 SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
+++..+.+.|+++.|+.+|+++++.++..|+++|.+|+. .++++..+++.|+++.|+++|.++ .++..++.+|.+|+
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999994 567888899999999999999977 58899999999999
Q ss_pred C-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHH
Q 012677 365 S-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 365 ~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
. ++..+..+.+.|+++.|+.++.++ ++.++..|+++|.+|+.+++... ..+.+.|+++.|+.++.++++.+++.|.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 234 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAI-KAIVDAGGVEVLQKLLTSTDSEVQKEAQR 234 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 8 677788999999999999999965 59999999999999998766544 45556899999999999999999999999
Q ss_pred HHHHHHhhHhhh
Q 012677 444 ILERLNKAALIV 455 (458)
Q Consensus 444 ~L~~l~~~~~~~ 455 (458)
+|.+|+...+..
T Consensus 235 ~L~~l~~~~~~~ 246 (252)
T 4hxt_A 235 ALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHTCBCC
T ss_pred HHHHHHcCCCcc
Confidence 999999876654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=230.34 Aligned_cols=278 Identities=16% Similarity=0.183 Sum_probs=245.5
Q ss_pred hhhhhhhHHhhc-CC-cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMS-SS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.|++.|. ++ +..|..|+..|.+++..++.++..+.+ .|+++.|+.+|.+. +..+++.|+++|.+++.+
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLGSS----SDDVREQAVWALGNVAGD 190 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-CCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhCC
Confidence 357899999996 34 788999999999999988999999999 89999999999975 889999999999999977
Q ss_pred ch-hhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 245 DE-NKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
.+ ++..+... |+++.|+.+| .+.+..++..++++|.+|+............|+++.|+.+|.++++.++..|+++|.
T Consensus 191 ~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 269 (528)
T 4b8j_A 191 SPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALS 269 (528)
T ss_dssp CHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 54 57777776 5999999999 667899999999999999988666666666899999999999999999999999999
Q ss_pred Hhcccccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+|+...+.+ ..+++.|+++.|+.+|.++ .++..|+.+|.+|+. ++.....+++.|+++.|+.+|.++.++.++..|
T Consensus 270 ~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A 349 (528)
T 4b8j_A 270 YLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEA 349 (528)
T ss_dssp HHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHH
Confidence 999877655 4577889999999999977 588999999999998 778888999999999999999966359999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+++|.||+.+.+.....+ ...|+++.|+.++.++++.++..|+++|.+++..
T Consensus 350 ~~~L~nl~~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 350 CWTISNITAGNKDQIQAV-INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHTSCHHHHHHH-HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH-HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999998766544344 4579999999999999999999999999999976
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=227.82 Aligned_cols=277 Identities=18% Similarity=0.194 Sum_probs=240.0
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH- 244 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~- 244 (458)
..++.+++.|. +++..|..|+..|..++.... .....+.+ .|+++.|+.+|.+. .++.++..|+++|.+++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~-~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHH-TTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCC
Confidence 46889999995 668889999999999876554 56677777 89999999999875 2389999999999999987
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHh-hcCChHHHHHHHHHHH
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLL-EEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~ 322 (458)
++++..++.. |++|.|+.+|.+++..++..|+++|.+|+.+. .++..+.+.|++++|+.+| .+.++.++..|+++|.
T Consensus 150 ~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 150 SENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5577778877 59999999999999999999999999999765 4588888899999999999 5668999999999999
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
+|+...+.....+..|+++.|+++|.++ .++..++++|.+|+.. +.....+++.|+++.|+.+|.++ ++.++..|+
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~ 307 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPAL 307 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHH
Confidence 9999876666667789999999999876 5889999999999985 55567888999999999999965 499999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHHhh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLNKA 451 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~~~ 451 (458)
++|.+|+.+.+... ..+.+.|+++.|+.++.++ ++.++..|+++|.+|+..
T Consensus 308 ~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 308 RTVGNIVTGDDAQT-QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHTTSCHHHH-HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHH-HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 99999999776544 4455689999999999998 999999999999999864
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=207.30 Aligned_cols=236 Identities=19% Similarity=0.264 Sum_probs=214.1
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
.++.|++.|. ++++.|..|+..|.+++..++.++..+.+ .|+++.|+.+|++. +..++..|+++|.+++.+ ++
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLTST----DSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCChH
Confidence 5788999995 56788999999999999988889999999 89999999999985 789999999999999998 66
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhh-ccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLS-ALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+.+. |+++.|+.+|++++.+++..|+++|.+|+ .+++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+
T Consensus 78 ~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 78888887 49999999999999999999999999999 45677888999999999999999999999999999999999
Q ss_pred cccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
...+ .+..+++.|+++.|+++|.++ .++..++.+|.+|+. +++.+..+.+.|+++.|++++.++ ++.+++.|+++
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHH
Confidence 8665 456788999999999999977 688999999999998 788899999999999999999965 59999999999
Q ss_pred HHHHhccCch
Q 012677 402 LYNICFTDRT 411 (458)
Q Consensus 402 L~~L~~~~~~ 411 (458)
|.+|+...+.
T Consensus 236 L~~l~~~~~~ 245 (252)
T 4hxt_A 236 LENIKSGGWL 245 (252)
T ss_dssp HHHHHHTCBC
T ss_pred HHHHHcCCCc
Confidence 9999987654
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-26 Score=210.31 Aligned_cols=236 Identities=18% Similarity=0.257 Sum_probs=210.2
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhc-ccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-c
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNL-SIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-L 286 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~ 286 (458)
....+.++.+|.+. +.+++..|+++|.++ +.+++++..+++. |++|.|+.+|++++.+++..|+++|.+|+. +
T Consensus 11 ~~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 11 GSELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG 85 (252)
T ss_dssp TCSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 45688999999885 889999999999764 4456678888887 499999999999999999999999999997 5
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+...+++ ..+++.|+++.|+++|.++ .++..++++|.+|
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999988 7789999999999999877 5789999999999
Q ss_pred cC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHH
Q 012677 364 SS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKAN 442 (458)
Q Consensus 364 a~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~ 442 (458)
+. +++.+..+.+.|+++.|+++|.++ ++.++..|+++|.+|+..++... ..+.+.|+++.|+.++.++++.+++.|+
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 98 678888899999999999999965 59999999999999998776554 4455689999999999999999999999
Q ss_pred HHHHHHHhh
Q 012677 443 GILERLNKA 451 (458)
Q Consensus 443 ~~L~~l~~~ 451 (458)
++|.+|+.+
T Consensus 244 ~~L~~l~~~ 252 (252)
T 4db8_A 244 EALEKLQSH 252 (252)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhcC
Confidence 999998753
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=209.86 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=208.1
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
.++.+++.| +++++.|..|+..|.++...++.++..+.+ .|+++.|+.+|++. +..++..|+++|.+++.+ ++
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSP----NEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence 577888888 467889999999997766656778888888 89999999999985 789999999999999984 56
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+.+. |++|.|+.+|++++..++..|+++|.+|+.+++++ ..+.+.|+++.|+.+|+++++.++..|+++|.+|+
T Consensus 88 ~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 88 QIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 78888887 59999999999999999999999999999998887 88889999999999999999999999999999999
Q ss_pred ccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
... +++..+++.|+++.|+++|.++ .++..|+.+|.+|+. +++.+..+.+.|+++.|++++.+. ++.+++.|+++
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~ 245 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEA 245 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHH
Confidence 865 4666788899999999999877 578999999999996 788999999999999999999965 59999999999
Q ss_pred HHHHhc
Q 012677 402 LYNICF 407 (458)
Q Consensus 402 L~~L~~ 407 (458)
|.+|+.
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 999985
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=222.51 Aligned_cols=277 Identities=16% Similarity=0.133 Sum_probs=244.2
Q ss_pred hhhhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.|++.|.+ ++..|..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..+++.|+++|.+++.+
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence 3578999999963 5788999999999999988888888888 89999999999874 889999999999999987
Q ss_pred c-hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 245 D-ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
. .++..+... |+++.|+.+|.+++..++..|+++|.+|+... +........|+++.|+.+|.++++.++..|+++|.
T Consensus 204 ~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 204 STDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 282 (530)
T ss_dssp CHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CccchHHHHHc-CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5 467777776 59999999999999999999999999999876 55556666899999999999999999999999999
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+|+...+ ....+++.|+++.|+.+|.++ .++..|+.+|.+|+. ++.....+.+.|+++.|+.+|.++ +..++..|
T Consensus 283 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A 361 (530)
T 1wa5_B 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEA 361 (530)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHH
Confidence 9997654 566688889999999999877 578899999999997 677888889999999999999976 59999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+++|.+|+.+.+.....++ +.|+++.|+.++.++++.++..|+++|.+++..
T Consensus 362 ~~aL~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999987765544444 589999999999999999999999999999875
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=217.63 Aligned_cols=279 Identities=15% Similarity=0.150 Sum_probs=243.1
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD- 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~- 245 (458)
+.++.|++.|. ++...+..|+..|.+++..++.++..+.. .|+++.|+.+|.+. +..++..|+++|.+|+.+.
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN----KPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC----CHHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccC----CHHHHHHHHHHHHHHhCCCC
Confidence 57888999885 67889999999999999988889999988 89999999999874 8899999999999999876
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+........ +++|.|+.+|.+++..++..|+++|.+|+... +....+.+.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 248 ~~~~~~~~~-~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 248 PQPDWSVVS-QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SCCCHHHHG-GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHH-hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 444444454 59999999999999999999999999999765 4467777889999999999999999999999999999
Q ss_pred ccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 325 CILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 325 ~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
+...+ ....+++.|+++.|+.+|.++ .++..|+++|.+|+. +++....+++.|+++.|+.+|.++ +..++..|++
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~ 405 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACW 405 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHH
Confidence 97654 555678889999999999987 578999999999997 778888899999999999999965 4999999999
Q ss_pred HHHHHhccCc---hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 401 ILYNICFTDR---TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 401 ~L~~L~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
+|.+|+.... .....++ +.|+++.|+.++.+.++.++..|.++|.++....+.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999998643 3333444 589999999999999999999999999999987654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=211.40 Aligned_cols=279 Identities=15% Similarity=0.116 Sum_probs=241.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD- 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~- 245 (458)
+.++.|++.|. +++..|..|+..|.+++..++.++..+.+ .|+++.|+.+|.+. .+..++..|+++|.+++.+.
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCC
Confidence 47888999985 56888999999999999988889999988 89999999999852 37899999999999999765
Q ss_pred h-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 E-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+ .+..+. . +++|.|+.++.+++..++..++++|.+|+... ++...+...|+++.|+.+|.++++.++..|+++|.+
T Consensus 183 ~~~~~~~~-~-~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 183 PPPEFAKV-S-PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SCCCGGGT-G-GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHH-H-HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 333333 3 59999999999999999999999999999865 456777789999999999999999999999999999
Q ss_pred hcccccc-hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLEN-KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
|+...+. ...+++.|+++.|+++|.++ .++..|+++|.+|+. +++....+++.|+++.|+.+|.++ ++.++..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHH
Confidence 9987664 44578889999999999877 578999999999997 788888899999999999999976 499999999
Q ss_pred HHHHHHhcc-CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 400 AILYNICFT-DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 400 ~~L~~L~~~-~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
++|.+|+.+ .+.....++ +.|+++.|+.++.++++.+++.|.++|.++....+.
T Consensus 340 ~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 999999986 444443444 579999999999999999999999999999987653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=210.24 Aligned_cols=275 Identities=17% Similarity=0.177 Sum_probs=237.7
Q ss_pred hhhhhhHHhhc-C-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS-S-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.|++.|. + ++..|..|+..|.+++..++.....+.+ .|+++.|+.+|++. ++.+++.|+++|.+++.+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSE----FEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccCC
Confidence 47888999885 4 5788999999999999877777777887 89999999999975 8899999999999999876
Q ss_pred h-hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccC-c-chhHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 246 E-NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALD-S-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
+ .+..+... |+++.|+.+|.+ .+..++..|+++|.+|+... . ....+. .|+++.|+.++.++++.++..++++|
T Consensus 139 ~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L 216 (450)
T 2jdq_A 139 TMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWAL 216 (450)
T ss_dssp HHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4 66677776 599999999996 68999999999999999765 2 233333 88999999999999999999999999
Q ss_pred HHhcccc-cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 322 FSLCILL-ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 322 ~~L~~~~-~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
.+|+... +++..+++.|+++.|+++|.++ .++..|+.+|.+|+. .+..++.+.+.|+++.|+.+|.++ ++.++..
T Consensus 217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~ 295 (450)
T 2jdq_A 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKE 295 (450)
T ss_dssp HHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHH
T ss_pred HHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHH
Confidence 9999865 4666678889999999999876 578999999999998 566777789999999999999965 5999999
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
|+++|.+|+.+.+.....++ +.|+++.|+.++.++++.++..|+++|.+++..
T Consensus 296 a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 296 ACWTISNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99999999987765544444 479999999999999999999999999999864
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=199.97 Aligned_cols=194 Identities=19% Similarity=0.264 Sum_probs=170.1
Q ss_pred CChHHHhhccCCCCCCCCh--hHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-
Q 012677 210 DAIPLLLSPLSPGRADTDP--GLLEDLITTILNLSIH-DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA- 285 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~--~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~- 285 (458)
-.++.|+.+|+++ +. .++..|+..|.+++.+ ++++..+.+.| ++|.||.+|++++.++++.|+++|.||+.
T Consensus 8 ~~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 8 MTLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4689999999985 55 8889999999999964 56888898885 89999999999999999999999999998
Q ss_pred cCcchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc----------------
Q 012677 286 LDSNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM---------------- 348 (458)
Q Consensus 286 ~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~---------------- 348 (458)
+++|+..|++.|+||+|+.+|++ ++.+++++|+.+|+||+..++++..+++. ++++|++++.
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 46899999999999999999985 68999999999999999999999999874 7999998763
Q ss_pred --cCCcHHHHHHHHHHhcC-CHHHHHHHHhc-CCHHHHHHHHhhc-----CChhHHhHHHHHHHHHhccC
Q 012677 349 --ENSLVDELLAILAMLSS-HQDAIEEIGEL-GAIPCLLRIIRES-----TCERNKENCAAILYNICFTD 409 (458)
Q Consensus 349 --~~~~~~~a~~~L~~La~-~~~~~~~i~~~-g~i~~Lv~ll~~~-----~~~~~~~~a~~~L~~L~~~~ 409 (458)
+..+++.|..+|+||+. ++++|+.+.+. |+|+.||.+++.+ .+.+.+++|+.+|+||+.+-
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 11467889999999998 78999999986 5689999999853 24789999999999999753
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=222.78 Aligned_cols=276 Identities=19% Similarity=0.175 Sum_probs=241.6
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.+.++.|++.|+ +++..|..|+..|.+++.. +.++..+....|+++.|+.+|.++ .+.+++..|+.+|.+|+.++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCc
Confidence 357889999995 6688999999999999985 456666665258999999999753 37899999999999999998
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+.+. |++|.|+.+|++++..++..|+++|.+|+.++ ..+..+.+.|+++.|+.+|.+++.+++..++.+|.++
T Consensus 92 ~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 EGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999997 59999999999999999999999999999875 5577788899999999999999999999999999999
Q ss_pred ccc-ccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 325 CIL-LENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 325 ~~~-~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
+.. ++++..+++.|+++.|+++|.++ ..+..++.+|.+|+.+++++..+++.|+++.|+.++.++ +..++..+++
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~ 249 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLW 249 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHH
Confidence 985 56888899999999999999876 356678999999999999999999999999999999965 5999999999
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+|.+|+...+.. .. ..|+++.|+.++.+.++.++..|+++|.+|+...
T Consensus 250 ~L~~l~~~~~~~--~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHTTCTTC--SC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCChhh--HH--HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 999999876532 11 2478999999999999999999999999998754
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=225.38 Aligned_cols=275 Identities=19% Similarity=0.175 Sum_probs=242.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
+.++.|+..|. +++.+|..|+..|.+++... .++..+....|+++.|+.+|.++ .+.+++..|+.+|.+|+.+.+
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChh
Confidence 57889999995 67889999999999999865 46666665258999999999864 378999999999999999999
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+.+. |+++.|+.+|++++..++..|+++|.+|+..+ ..+..+.+.|+|+.|+.+|++++++++..++.+|.+|+
T Consensus 90 ~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTT-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHc-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 99999987 59999999999999999999999999999875 45777888999999999999999999999999999999
Q ss_pred c-cccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 I-LLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~-~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
. .++++..+++.|+++.|+++|.++ ..+..++.+|.+|+.+++++..+++.|+++.|+.++.+. +..+++.++++
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~ 247 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWT 247 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHH
Confidence 6 667899999999999999999876 356789999999999999999999999999999999965 59999999999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
|.+|+...+.. .. ..++++.|+.++.+.++.+++.|+++|.+|+...
T Consensus 248 L~nL~~~~~~~--~~--~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 248 LRNLSDAATKQ--EG--MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHGGGCTTC--CS--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcchhh--hh--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999876432 11 2478999999999999999999999999998754
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=212.48 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=239.4
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-c
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-D 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~ 245 (458)
+.++.|++.+. +++..+..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..++..++.+|.+++.+ +
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~----~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhCCH
Confidence 57889999995 56788999999999999988888888888 89999999999874 788899999999999975 5
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+... |+++.|+.+|+++ +...+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++.++..++++|.+|
T Consensus 176 ~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 176 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 678888887 5899999999887 45677788999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRES-TCERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~ 400 (458)
+....... ...|+++.|+++|.++ .++..++++|.+|+. +++++..+.+.|+++.|+++|.+. +++.+++.|++
T Consensus 255 ~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 255 SDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 98764332 2358999999999876 688999999999998 578999999999999999999863 33799999999
Q ss_pred HHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCC-HHHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRTR--TREIMEEENANGTLSRLAENGT-SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~ 453 (458)
+|.||+.+.+.. .+..+...|+++.|+.++.+++ +.++..|+++|++++....
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 999999875432 2344556889999999999876 5899999999999986543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=214.45 Aligned_cols=278 Identities=15% Similarity=0.111 Sum_probs=239.1
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhccc-Cc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSI-HD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~-~~ 245 (458)
+.++.|++.|. ++...+..|+..|.+++..++..+..+.+ .|+++.|+.+|++. +..++..++.+|.+++. ++
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcC----CHHHHHHHHHHHHHHHhcCc
Confidence 57889999995 56788999999999999988888888888 89999999999975 67888888899999996 56
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+... |+++.|+.+|++++ ...+..++.+|.+|+...+++..+.+.|+++.|+.++.+++..++..++++|.+|
T Consensus 173 ~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 173 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 688888887 49999999999874 6788999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcC-ChhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIREST-CERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~ 400 (458)
+...... ....|+++.|+++|.++ .++..++++|.+|+. +++++..+.+.|+++.|+.+|.+.. .+.+++.|++
T Consensus 252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 9765432 22348999999999876 678999999999998 5789999999999999999998643 2799999999
Q ss_pred HHHHHhccCch--hHHHHHHhhhhhHHHHHHhhhCC-HHHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRT--RTREIMEEENANGTLSRLAENGT-SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~--~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~ 453 (458)
+|.+|+...+. ..+..+...|+++.|++++.+.+ +.+++.|+++|++|+....
T Consensus 330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 99999986442 22343455889999999998875 6899999999999986543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=194.67 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=166.8
Q ss_pred CCHHHHHHHHhcCCH--HHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccch
Q 012677 256 LAIPLLIDSVRTGTI--ETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENK 331 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~--~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~ 331 (458)
-.+|.||.+|++++. +++..|+++|.+|+.. ++++..|.+.|+||+||.+|++++++++..|+++|.||+. +++|+
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999987 8999999999999964 5689999999999999999999999999999999999998 46799
Q ss_pred hHHHhhCcHHHHHHHhcc-C--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHh---hc------------CChh
Q 012677 332 RRAVHAGAVRVILRKIME-N--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIR---ES------------TCER 393 (458)
Q Consensus 332 ~~i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~---~~------------~~~~ 393 (458)
..++++|+||+|+++|.+ + .+++.++.+|++|+..+++|..|++. +++.|++++. .+ .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999974 3 68999999999999999999999875 6999998663 11 2468
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC------CHHHHHHHHHHHHHHHh
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG------TSRAKRKANGILERLNK 450 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~------~~~~~~~A~~~L~~l~~ 450 (458)
++++|.++|+||+..+++..+.+....|.++.|+.+++.+ ++..++.|+.+|+||+-
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999999876443334444568899999998753 56899999999999983
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=184.12 Aligned_cols=194 Identities=18% Similarity=0.285 Sum_probs=174.4
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc-cccchh
Q 012677 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSA-LDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI-LLENKR 332 (458)
Q Consensus 255 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~ 332 (458)
+++.+.|+.+|++++.+++..|+++|.+|+. +++++..+.+.|+|+.|+.+|+++++.++..|+++|.+|+. .++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3588999999999999999999999999995 45668889999999999999999999999999999999996 456788
Q ss_pred HHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC
Q 012677 333 RAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD 409 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~ 409 (458)
.+++.|+++.|+.+|.++ .++..|+++|.+|+. +++.+..+.+.|+++.|+++|.++ +..++..|+++|.+|+..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence 899999999999999987 578999999999997 778888999999999999999965 5999999999999999986
Q ss_pred chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 410 RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 410 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+... ..+.+.|+++.|+.++.++++.++++|.++|.+|+.
T Consensus 170 ~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 6543 555568999999999999999999999999999975
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=218.51 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=221.7
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..++.+++.|. ++.+.+..++..|+.. .+..+. .|+++.|+.+|.+. +..+++.|+.+|.+|+.+..
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~~~----d~~vr~~A~~~L~~L~~~~~ 182 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLNDE----DQVVVNKAAVMVHQLSKKEA 182 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHTSHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhCCCh
Confidence 35788999996 4566677677666543 223443 59999999999864 88999999999999999988
Q ss_pred hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+....|+++.|+.+|+++ +.+++..|+.+|.+|+..++++..+++.|+|+.|+.+|+++++.++..|+++|.+|+
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 8888887656999999999876 899999999999999999889999999999999999999999999999999999999
Q ss_pred cccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
...+ .+..+++.|+++.|+++|.++ .++..++.+|.+|+. +++++..+.+.|+++.|+.+|+++.....++.++.+
T Consensus 263 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~a 342 (780)
T 2z6g_A 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342 (780)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9865 555667899999999999876 467788899999997 799999999999999999999977667778899999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
|.+|+.....+ ..+...|+++.|+.++.++++.+++.|+++|.+|+...
T Consensus 343 L~~Ls~~~~~~--~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 343 LKVLSVCSSNK--PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHHHTSTTHH--HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhcChHHH--HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 99999866543 44445889999999998888888888999988888644
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=181.50 Aligned_cols=193 Identities=16% Similarity=0.233 Sum_probs=173.1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-c
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-L 286 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~ 286 (458)
.|..+.|+.+|++. +..++..|+++|.+++.+ ++++..+.+. |++|.|+.+|++++.+++..|+++|.+|+. +
T Consensus 11 ~~~~~~l~~LL~s~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 11 GSELPQMVQQLNSP----DQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp --CHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 58899999999875 899999999999999955 5577788887 599999999999999999999999999996 4
Q ss_pred CcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 287 DSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 287 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
++++..+.+.|+++.|+.+|+++++.++..|+++|.+|+...+ .+..+++.|+++.|+++|.++ .++..|+.+|.+|
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999997654 566788999999999999977 5889999999999
Q ss_pred cCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhc
Q 012677 364 SSH-QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICF 407 (458)
Q Consensus 364 a~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~ 407 (458)
+.. ++.+..+.+.|+++.|++++.+. ++.+++.|+++|.+|+.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 995 89999999999999999999964 59999999999999986
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=211.24 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=238.1
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-c
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-D 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~ 245 (458)
+.++.|++.|. ++...+..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..++..++.+|.+++.. +
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~----~~~v~~~a~~aL~~La~~~~ 308 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 308 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhcCCh
Confidence 57888999995 56788999999999999988888999988 89999999999874 778899999999999864 5
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGT-IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+++..+... |+++.|+.+|+.++ ...+..++.+|.+|+....++..+++.|+++.|+.++.+++..++..|+++|.+|
T Consensus 309 e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 309 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHTT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 678888887 58999999999875 5567789999999999889999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCC-hhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTC-ERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~ 400 (458)
+...... ....++++.|+++|.++ .++..|+.+|.+|+. .++++..+++.|+++.|+++|.+..+ +.+++.|++
T Consensus 388 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 388 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 9766432 22358999999999876 678999999999998 57899999999999999999986432 489999999
Q ss_pred HHHHHhccCchh--HHHHHHhhhhhHHHHHHhhhCCH-HHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRTR--TREIMEEENANGTLSRLAENGTS-RAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~-~~~~~A~~~L~~l~~~~~ 453 (458)
+|.+|+...+.. .+..+...|+++.|++++.+++. .+++.|+++|.+|+....
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 521 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 521 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH
Confidence 999999765432 23345568899999999988764 899999999999996544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=208.04 Aligned_cols=281 Identities=15% Similarity=0.117 Sum_probs=226.3
Q ss_pred hhhhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCch--------------------------------------hhhhh
Q 012677 166 SRSHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPL--------------------------------------FRALF 205 (458)
Q Consensus 166 ~~~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~~~~i 205 (458)
+...++.|++.+. .+......++..|.+++...+. ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 3456888888885 3445556666677776653221 56677
Q ss_pred hhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 012677 206 GESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIE---TRRNAAAALFS 282 (458)
Q Consensus 206 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~---~~~~a~~~L~~ 282 (458)
.+ .|+|+.|+.++++. ++.+++.|+++|.||+.+.++|..+++.| +++.|+.+|.+++.. .+..|+.+|.+
T Consensus 454 ~e-aGvIp~Lv~Ll~S~----s~~~re~A~~aL~nLS~d~~~R~~lvqqG-al~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 454 LR-TELISFLKREMHNL----SPNCKQQVVRIIYNITRSKNFIPQLAQQG-AVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp TT-TTHHHHHHHHGGGS----CHHHHHHHHHHHHHHHTSGGGHHHHHHTT-HHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HH-CcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 88 99999999999875 88999999999999999999999999985 899999999988654 89999999999
Q ss_pred hhccCcchhHhhc---cCchHHHHHHhhc--CCh------------HHHHHHHHHHHHhccccc-----chhHHHhh-Cc
Q 012677 283 LSALDSNKLIIGK---LGAMTPLIDLLEE--GHP------------LAMKDVASAIFSLCILLE-----NKRRAVHA-GA 339 (458)
Q Consensus 283 Ls~~~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~a~~aL~~L~~~~~-----~~~~i~~~-g~ 339 (458)
|....+....+.. .|+|++|+.+|.. +.. -.+..|+.||.||+..++ .+..+++. |+
T Consensus 528 Llis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 9976655544422 4999999999983 111 126799999999999873 37778985 99
Q ss_pred HHHHHHHhccC--CcHHHHHHHHHHhcCCHHHH-HHHHhcC------CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 340 VRVILRKIMEN--SLVDELLAILAMLSSHQDAI-EEIGELG------AIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 340 v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~-~~i~~~g------~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
++.|..+|.++ .++..|+.+++||+.++++. +.+...+ .++.||.++.. ++..++.+|.++|++++...+
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCh
Confidence 99999999877 58899999999999999875 3553322 38899999985 469999999999999987777
Q ss_pred hhHHHHHHhhhhhHHHHHHhhh--CCHHHHHHHHHHHHHHHhhHh
Q 012677 411 TRTREIMEEENANGTLSRLAEN--GTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 411 ~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~ 453 (458)
..++.++...++++.++.++.. .++.++.+++.++.||..+.+
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 6667778766899999999998 899999999999999997543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=202.81 Aligned_cols=276 Identities=12% Similarity=0.135 Sum_probs=223.5
Q ss_pred hhhhhHHhhcC-CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-
Q 012677 169 HLNSLLEKMSS-SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE- 246 (458)
Q Consensus 169 ~l~~Lv~~l~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~- 246 (458)
..+.+++.|.. +.+.+..|++.|..++. ++..|+.+++..|.+..|+.+++.. .+..+...++.+|.||+...+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~---~d~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQ---KMTHCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTT---CCTTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhcCCCcc
Confidence 56667777764 45668999999999998 5888888887678899999999862 377899999999999976322
Q ss_pred --------------------------------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 247 --------------------------------------NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 247 --------------------------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
++..+.+. |++|.|+.++++++..+++.|+++|.||+.+.+
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNLSPNCKQQVVRIIYNITRSKN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 34556666 599999999999999999999999999999999
Q ss_pred chhHhhccCchHHHHHHhhcCChH---HHHHHHHHHHHhcccccchhHHH--h-hCcHHHHHHHhcc-CC----------
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPL---AMKDVASAIFSLCILLENKRRAV--H-AGAVRVILRKIME-NS---------- 351 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~~L~~~~~~~~~i~--~-~g~v~~Lv~ll~~-~~---------- 351 (458)
+|..+++.|++++|+.+|.+++.. ++..|+.+|.+|....+....+- . .|++++|+++|.. +.
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 999999999999999999987544 89999999999986555333321 1 3999999999983 22
Q ss_pred ----c-HHHHHHHHHHhcCCH-----HHHHHHHhc-CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH---
Q 012677 352 ----L-VDELLAILAMLSSHQ-----DAIEEIGEL-GAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM--- 417 (458)
Q Consensus 352 ----~-~~~a~~~L~~La~~~-----~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--- 417 (458)
+ +..|+.+|.|||..+ +.|..|+++ |+++.|+.+|.+. +..++.+|+++++||+.........+.
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~ 648 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLE 648 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence 1 568999999999964 568889885 9999999999964 589999999999999986653211232
Q ss_pred --HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 418 --EEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 418 --~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
...+.++.|+.|+.+++..+++.|+++|.+++.
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 112358899999999999999999999999963
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=176.53 Aligned_cols=221 Identities=16% Similarity=0.146 Sum_probs=182.0
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLID-SVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLID 304 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~ 304 (458)
+.+.+..|+..|.+++.+.++...+...| ++|.|+. +|++++.+++..|+++|.+++.++ ..+..+++.|++++|+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 44678899999999999888999898875 8999999 999999999999999999999876 45788889999999999
Q ss_pred HhhcC-ChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCH
Q 012677 305 LLEEG-HPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAI 379 (458)
Q Consensus 305 lL~~~-~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i 379 (458)
+|+++ +..++..|+++|.+|+.+.. ....+++.|+++.|+.+|.++ .++..|+++|.+|+. +++.+..+++.|++
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 99975 88999999999999998654 566788899999999999977 678999999999988 68899999999999
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHH---HHHhh-hC-CHHHHHHHHHHHHHHHh
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTL---SRLAE-NG-TSRAKRKANGILERLNK 450 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L---~~ll~-~~-~~~~~~~A~~~L~~l~~ 450 (458)
+.|+.+|.+. +..+++.|+.+|.+|+...+... ...... .....| .+-++ .. +..+.++|..+|.++..
T Consensus 212 ~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~-~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGV-RECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHH-HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHH-HHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999965 59999999999999999854322 111111 111222 12223 22 46788999999988763
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-20 Score=172.66 Aligned_cols=182 Identities=18% Similarity=0.166 Sum_probs=163.2
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHH
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRK 346 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~l 346 (458)
+.+.+..|+..|.+++.+.+|+..+...|++++|+. +|+++++.++..|+++|.+++.+++ .+..+++.|++++|+++
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 456789999999999998889999999999999999 9999999999999999999998664 67779999999999999
Q ss_pred hccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhh
Q 012677 347 IMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENA 422 (458)
Q Consensus 347 l~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~ 422 (458)
|.++ .+++.|+++|.+|+. ++...+.+.+.|+++.|+.+|+++ +..++..|+++|.+|+.+++... ..+.+.|+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~-~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHK-GTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGH-HHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHH-HHHHHcCC
Confidence 9853 578999999999997 688888999999999999999965 59999999999999999876554 44556899
Q ss_pred hHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 423 NGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 423 ~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++.|+.|+.+.++.+++.|..+|.+|....
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998763
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=146.58 Aligned_cols=77 Identities=36% Similarity=0.532 Sum_probs=70.9
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
.....++++|.||||+++|+|||+++|||+||+.||.+||.. +.+||+|+.+++...+.||..++..|+.|+.+++.
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 445568999999999999999999999999999999999984 67999999999999999999999999999988763
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=144.56 Aligned_cols=79 Identities=33% Similarity=0.477 Sum_probs=72.3
Q ss_pred CCcCCCCCCccccccccccccCCccCCCc-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANG-QTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cg-h~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
+.....++++|.||||+++|+|||+++|| |+||+.||.+||.. +.+||+|+.++....+.||..++..|+.|+.+++.
T Consensus 13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 44456689999999999999999999999 99999999999985 67899999999999999999999999999999875
Q ss_pred C
Q 012677 149 E 149 (458)
Q Consensus 149 ~ 149 (458)
.
T Consensus 92 ~ 92 (98)
T 1wgm_A 92 Q 92 (98)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=143.52 Aligned_cols=77 Identities=36% Similarity=0.566 Sum_probs=70.4
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHG 147 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~ 147 (458)
+.....++++|.||||+++|+|||+++|||+||+.||.+||.. +.+||+|+.++....+.||..++++|+.|+.+++
T Consensus 5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 3445568999999999999999999999999999999999985 6789999999998899999999999999998764
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-20 Score=138.57 Aligned_cols=75 Identities=48% Similarity=1.054 Sum_probs=70.0
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
.+++++.||||+++|.+|++++|||+||+.||.+|+..+..+||.|+.++....+.+|..++++|++|..+++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 478899999999999999999999999999999999876789999999999889999999999999999998753
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=154.91 Aligned_cols=75 Identities=32% Similarity=0.470 Sum_probs=69.7
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
.+|++|.||||+++|.|||+++|||+||+.||.+||..++.+||+|+.+++...+.||..++.+|+.|+.++|+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 378999999999999999999999999999999999865457999999999889999999999999999998864
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-18 Score=132.82 Aligned_cols=73 Identities=27% Similarity=0.476 Sum_probs=64.6
Q ss_pred CCCccccccccccccCCccCC-CcccccHHHHHHHHhcC-----CCCCCC--CCcc-CCCCCCcccHHHHHHHHHHHHHh
Q 012677 76 LPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG-----NRTCPQ--TRQV-LSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~-----~~~CP~--c~~~-l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
.+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||+ |+.. +....+.||..++.+|+.|..++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 467899999999999999996 99999999999999753 358999 7666 88889999999999999999876
Q ss_pred CC
Q 012677 147 GI 148 (458)
Q Consensus 147 ~~ 148 (458)
+.
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-18 Score=159.03 Aligned_cols=76 Identities=32% Similarity=0.458 Sum_probs=70.0
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
..+++.|.||||+++|.|||+++|||+||+.||.+|+..+..+||+|+.+++...+.||..++.+|++|+.++++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 3478899999999999999999999999999999999876667999999999889999999999999999988753
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-17 Score=126.68 Aligned_cols=77 Identities=34% Similarity=0.544 Sum_probs=67.6
Q ss_pred CCCCCCccccccccccccCCccCC-CcccccHHHHHHHHhc-CCCCCCCCCccC-CCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 73 LLGLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDE-GNRTCPQTRQVL-SHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 73 ~~~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~-~~~~CP~c~~~l-~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
...+++++.||||+++|.+|++++ |||+||+.||.+|+.. +...||.||.++ ....+.+|..++.+++.|...++..
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 345788999999999999999999 9999999999999964 346899999997 4667899999999999999877643
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-16 Score=156.21 Aligned_cols=279 Identities=17% Similarity=0.188 Sum_probs=223.7
Q ss_pred hhhhhhHHhhcCC--cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMSSS--LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
++|+.|+..+++. .+.|+.|+..|+.+++. ++..++. ++++.|+..|+.. ..|.++...++.+|.++-..+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d--~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTD--RSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCC
Confidence 5899999999633 78999999999999864 5666666 8899999999874 258899999999998864332
Q ss_pred h------------------hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhc-cCchHHHHH
Q 012677 246 E------------------NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGK-LGAMTPLID 304 (458)
Q Consensus 246 ~------------------~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~-~g~i~~Lv~ 304 (458)
+ +...+....+.++.|+.+|++.+..+|.+++..|..|+.+.. +++.|.. .++|+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 2 223555556789999999999999999999999999987664 4777775 799999999
Q ss_pred HhhcCChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhccC------CcHHHHHHHHHHhcC-CHHHHHHHHhc
Q 012677 305 LLEEGHPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIMEN------SLVDELLAILAMLSS-HQDAIEEIGEL 376 (458)
Q Consensus 305 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~~~a~~~L~~La~-~~~~~~~i~~~ 376 (458)
+|++....+|..++.+|.+|+.++.+.++++.. |+++.|+.++.++ .+...|+.+|.+|.. ++.++..|.+.
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 999999999999999999999999988887774 9999999999854 367889999999999 78899999999
Q ss_pred CCHHHHHHHHhhcCCh-----hHHhH---HHHHHHHHhccCc------hhHHHHHHhhhhhHHHHHHhhhC--CHHHHHH
Q 012677 377 GAIPCLLRIIRESTCE-----RNKEN---CAAILYNICFTDR------TRTREIMEEENANGTLSRLAENG--TSRAKRK 440 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~-----~~~~~---a~~~L~~L~~~~~------~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~ 440 (458)
|+++.|..++...... ..-.+ ++.++..|+..+. .++ ..+.+.|+++.|++++.+. ...++..
T Consensus 254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ-~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQ-KAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHH-HHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 9999999999743211 12233 6677777776532 234 3455689999999998764 6678989
Q ss_pred HHHHHHHHHhhHhh
Q 012677 441 ANGILERLNKAALI 454 (458)
Q Consensus 441 A~~~L~~l~~~~~~ 454 (458)
|..++..+.+..+.
T Consensus 333 Al~tla~~irgN~~ 346 (651)
T 3grl_A 333 TINTVSEVIRGCQV 346 (651)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHH
Confidence 98888887765443
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-16 Score=128.08 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=63.6
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~~~ 145 (458)
.+.+++.||||+++|.+|++++|||+||+.||.+|+..+...||.||.++.. ..+.+|..++.+++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 3567789999999999999999999999999999998666689999999987 6789999999999988643
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-15 Score=128.04 Aligned_cols=69 Identities=23% Similarity=0.499 Sum_probs=63.0
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC-CCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT-VLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~-~~~~n~~l~~~i~~~~~ 144 (458)
+++++.||||++.|.+|++++|||+||+.||.+|+..+...||+||.++... .+.+|..++.+++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 5667899999999999999999999999999999987666899999999877 78999999999998863
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=135.23 Aligned_cols=76 Identities=26% Similarity=0.403 Sum_probs=66.6
Q ss_pred CCcCCCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCC--CCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQ--TRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~--c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
+........+++||||+++|+|||+. .|||+||+.||.+||..+ ...||+ |++.+....+.||..++.+++.|..+
T Consensus 172 DI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 172 DLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred cceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 44445567899999999999999985 999999999999999753 458999 99999999999999999999998753
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-15 Score=117.05 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=64.0
Q ss_pred CCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHh
Q 012677 75 GLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEH 146 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~ 146 (458)
.+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.||..+....+.+|..++.+++.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 345678999999999999988 89999999999999985 568999999999888999999999999997654
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-16 Score=118.15 Aligned_cols=65 Identities=28% Similarity=0.450 Sum_probs=56.3
Q ss_pred CCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcC------CCCCCCCCccCCCCCCcccHHHHH
Q 012677 73 LLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG------NRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 73 ~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~------~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
...+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.||..+....+.+|..+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34577889999999999999999999999999999999852 568999999998888888876543
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-15 Score=105.66 Aligned_cols=59 Identities=12% Similarity=0.361 Sum_probs=51.4
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.....+.+++.||||++.+.+|+.++|||+||+.||.+|+..+...||.||.++....+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 44456788999999999999999999999999999999997556789999999876543
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-15 Score=117.93 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=61.1
Q ss_pred CCCCccccccccccccCCcc-CCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVV-LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~-l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
.+.+++.||||++.+.+|+. ++|||+||+.||.+|+......||.||.++....+.++..+..+++.+-.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 35577899999999999999 89999999999999998755689999999998888888888777766543
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-15 Score=120.27 Aligned_cols=72 Identities=21% Similarity=0.475 Sum_probs=64.1
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQW 142 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~ 142 (458)
.+...+.+++.||||++.+.+|++++|||+||+.||.+|+......||.||.++....+.++..+++.|.++
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp CBSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hhccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 356678899999999999999999999999999999999986556899999999988888999888877754
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-15 Score=121.87 Aligned_cols=70 Identities=26% Similarity=0.439 Sum_probs=61.5
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC-------CCCcccHHHHHHHHHHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-------TVLIPNHLVREMISQWC 143 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-------~~~~~n~~l~~~i~~~~ 143 (458)
....+++.||||++.+.+|++++|||+||+.||.+|+..+...||.||..+.. .....|..+..++++|.
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 34567899999999999999999999999999999998767799999999864 45678899999998886
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=105.64 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=52.5
Q ss_pred CcCCCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
.....+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||+||..+...++.++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3445578899999999999999997 99999999999999985 5689999999987766544
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-15 Score=114.39 Aligned_cols=67 Identities=28% Similarity=0.452 Sum_probs=57.3
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcC-----CCCCCCCCccCCCCCCcccHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG-----NRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~-----~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
.....+.+.+.||||++.+.+|++++|||+||+.||.+|+... ...||.||..+....+.+|..++.
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 3445577889999999999999999999999999999999862 568999999999888888866543
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-15 Score=154.04 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCCcChhHHHHHHHHHHhhc---cc-cccC-------CCCcCCC-CCCCCcCCCCCCcccccccccccc
Q 012677 23 LQRLVKAILDEDDYGGLQVTNEALRVLSCLK---DL-KLKK-------PHSFKGG-AAGDDHLLGLPYEFRCPISGEIMT 90 (458)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~-~~~~-------~~~~~~~-~~~~~~~~~~~~~~~C~ic~~~~~ 90 (458)
.+.|+++++.|+++|.++.|++|..++.+.. .. .+.+ ....+.. .+.+....++|++|.|||.+++|+
T Consensus 823 ~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~ 902 (968)
T 3m62_A 823 QSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMK 902 (968)
T ss_dssp CHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCS
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHh
Confidence 4689999999999999999999999995431 11 1100 0000000 000223467899999999999999
Q ss_pred CCccCCCc-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 91 DPVVLANG-QTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 91 ~p~~l~cg-h~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
|||++|.| ++|+|.+|.+|+.. +.+||++|.+++...+.||+.+++.|++||.+++.
T Consensus 903 DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 903 DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 99999998 69999999999986 66899999999999999999999999999988753
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=106.27 Aligned_cols=62 Identities=32% Similarity=0.464 Sum_probs=50.5
Q ss_pred CcCCCCCCccccccccccccCCccCC-CcccccHHHHHHHHhcC-CCCCCCCCccCCCC-CCccc
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHT-VLIPN 132 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~-~~~~n 132 (458)
.....+++++.||||++.|.+|++++ |||+||+.||.+|+... ...||+||.++... .+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 33455788999999999999999999 99999999999999853 36899999986543 33344
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-14 Score=105.33 Aligned_cols=60 Identities=25% Similarity=0.495 Sum_probs=51.5
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCCCccCCCCCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c~~~l~~~~~ 129 (458)
......+.+.+.||||++.+.+|++++|||+||+.||.+|+.. +...||+||.++....+
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3445567889999999999999999999999999999999973 45689999999876654
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=107.25 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
+...+.+.||||++.+.+|++++|||+||+.||.+|+.. ...||+||.++. ..+.+|..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 345678899999999999999999999999999999985 668999999997 56667765533
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-14 Score=116.69 Aligned_cols=68 Identities=18% Similarity=0.439 Sum_probs=60.1
Q ss_pred CCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCC----CCcccHHHHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT----VLIPNHLVREMISQWC 143 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~----~~~~n~~l~~~i~~~~ 143 (458)
.+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..++.+++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456789999999999999998 99999999999999985 47899999998865 6778999999988764
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-15 Score=113.72 Aligned_cols=67 Identities=28% Similarity=0.554 Sum_probs=57.3
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc-----CCCCCCCCCccCCCCCCcccHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE-----GNRTCPQTRQVLSHTVLIPNHLVRE 137 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~-----~~~~CP~c~~~l~~~~~~~n~~l~~ 137 (458)
.....+.+.+.||||++.+.+|+.++|||+||+.|+..|+.. +...||.||..+....+.+|..++.
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 344567788999999999999999999999999999999975 3568999999999888888866543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-12 Score=130.17 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=214.8
Q ss_pred hhhhhhHHhhc---CCcHHHHHHHHHHHHHHhhCch-----------------hhhhhhhccCChHHHhhccCCCCCCCC
Q 012677 168 SHLNSLLEKMS---SSLSDQKEAAKELRLLTKRMPL-----------------FRALFGESTDAIPLLLSPLSPGRADTD 227 (458)
Q Consensus 168 ~~l~~Lv~~l~---~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 227 (458)
.+++.|+..|. .|.+....++..|.++...++. +.+.+.+..+.|+.|+.+|.+. +
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~----d 135 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF----D 135 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC----C
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc----c
Confidence 47889999995 4566677788888776654332 2233433378899999999874 8
Q ss_pred hhHHHHHHHHHHhcccCch--hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHH
Q 012677 228 PGLLEDLITTILNLSIHDE--NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLID 304 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~ 304 (458)
-.++..++..|..|+.+.+ ++..+....++++.|+.+|+.....+|..++.+|.+|+.++.+...++. .|+++.|+.
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 8999999999999987654 5788888878999999999999999999999999999998888666666 899999999
Q ss_pred HhhcCC----hHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC-C-------cHHH---HHHHHHHhcCC--
Q 012677 305 LLEEGH----PLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN-S-------LVDE---LLAILAMLSSH-- 366 (458)
Q Consensus 305 lL~~~~----~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~-~-------~~~~---a~~~L~~La~~-- 366 (458)
++.... ..+...++.+|.||...+. |+..+.+.|+++.|..+|..+ + .... ++.++.-|...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998743 3678899999999998765 888888999999999999744 1 1122 56666666552
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCchhHHHHHHhh----hhhHHHHH----Hhhh
Q 012677 367 -----QDAIEEIGELGAIPCLLRIIRES-TCERNKENCAAILYNICFTDRTRTREIMEEE----NANGTLSR----LAEN 432 (458)
Q Consensus 367 -----~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~----g~~~~L~~----ll~~ 432 (458)
+.++..+.+.|+++.|++++..+ -+..++..|+.++..+..+++..+..+.... ...+.++. ++.+
T Consensus 296 ~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 35789999999999999999853 2578999999999999999886654544321 01233433 3433
Q ss_pred -CCHHHHHHHHHHHHHHHhhH
Q 012677 433 -GTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 433 -~~~~~~~~A~~~L~~l~~~~ 452 (458)
....+|-.|+..++.+....
T Consensus 376 ~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHHHhCC
Confidence 35678888888888776444
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=117.05 Aligned_cols=67 Identities=24% Similarity=0.347 Sum_probs=61.1
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKE 145 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~ 145 (458)
+.+++.||||++++.+|+++ +|||+||+.||..|+. ..||.||.++....+.+|..++.+++.|...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 45678899999999999999 9999999999999997 5799999999888899999999999988654
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=123.99 Aligned_cols=71 Identities=27% Similarity=0.452 Sum_probs=61.7
Q ss_pred CCCCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCC-CCCcccHHHHHHHHHHHH
Q 012677 74 LGLPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH-TVLIPNHLVREMISQWCK 144 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~-~~~~~n~~l~~~i~~~~~ 144 (458)
..+.+.+.||||++.+.+|+.+ +|||+||+.||.+|+..+...||.||.++.. ..+.+|..++.+|..|..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 3456788999999999999998 9999999999999999767789999999854 568899999999998854
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-14 Score=99.69 Aligned_cols=51 Identities=29% Similarity=0.534 Sum_probs=44.7
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQT 120 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c 120 (458)
......+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||+|
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3455667889999999999999999999999999999999984 45689998
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-14 Score=119.22 Aligned_cols=64 Identities=22% Similarity=0.491 Sum_probs=51.6
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
.+++.||||++.|.+|++++|||+||..||.+|+.. ..+||+||.++... .++..+...++.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 356789999999999999999999999999999985 56899999998654 23555555555543
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-14 Score=114.46 Aligned_cols=67 Identities=18% Similarity=0.430 Sum_probs=56.3
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
.+.+.||||++.+.+|++++|||+||+.||.+|+... ...||.||.++....+.+|..+..+++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 3456799999999999999999999999999999853 258999999999888888766666666554
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-14 Score=120.43 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=58.6
Q ss_pred CCcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC---------CCCcccHHHHHHHH
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH---------TVLIPNHLVREMIS 140 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~---------~~~~~n~~l~~~i~ 140 (458)
+.+...+.+++.||||++++.+|++++|||+||+.||.+|+..+...||.||.++.. ..+.++..+++.|.
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence 344467889999999999999999999999999999999998766689999997532 23557777766665
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-14 Score=100.69 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=48.0
Q ss_pred Cccccccccc-cccCCc----cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 78 YEFRCPISGE-IMTDPV----VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~----~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
+++.||||++ .+.+|+ +++|||+||+.||.+|+..+...||.||.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4678999999 999994 679999999999999988666789999999988777654
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-14 Score=99.04 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=48.6
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccH
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNH 133 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~ 133 (458)
.|.||||+++|.|||++ +|||+||+.||.+|+.. +.+||++++++...++.|++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 47899999999999999 89999999999999986 45799999999988888775
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-13 Score=120.30 Aligned_cols=71 Identities=21% Similarity=0.485 Sum_probs=63.5
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHH
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQ 141 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~ 141 (458)
.+...+++.+.||||+++|.+|++++|||+||+.||.+|+..+..+||.||.++....+.++..+...|.+
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp EESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred hhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 45667899999999999999999999999999999999998656689999999998888899888877764
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=94.54 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=43.3
Q ss_pred CcCCCCCCccccccccccccCCccCCCcccccHHHHHHHHhc--CCCCCCCC
Q 012677 71 DHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDE--GNRTCPQT 120 (458)
Q Consensus 71 ~~~~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~--~~~~CP~c 120 (458)
.....+.+.+.||||++.+.+|+.++|||+||+.||.+|+.. ....||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 334556788999999999999999999999999999999764 46789997
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-13 Score=102.69 Aligned_cols=56 Identities=30% Similarity=0.550 Sum_probs=48.8
Q ss_pred cCCCCCCccccccccccccC----CccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCC
Q 012677 72 HLLGLPYEFRCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHT 127 (458)
Q Consensus 72 ~~~~~~~~~~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~ 127 (458)
....+.+.+.||||++.+.+ |+.++|||+||+.||.+|+... ...||+||..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 34557788999999999999 9999999999999999999864 46899999988764
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=112.28 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=55.3
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI-PNHLVREMIS 140 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~-~n~~l~~~i~ 140 (458)
.+.+++.||||++.+.+|+.++|||+||+.||.+|+......||.||.++....+. ++..+..++.
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN 85 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHH
Confidence 35568899999999999999999999999999999987567899999999877654 4555555554
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-13 Score=98.79 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
..+.+.|+||++.+.+|+.++|||.||+.||.+|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence 4567899999999999999999999999999999985 46899999998654
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-13 Score=100.34 Aligned_cols=56 Identities=25% Similarity=0.461 Sum_probs=49.0
Q ss_pred CCCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 76 LPYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
..+++.||||++.+.+| +.++|||+||..||.+|+.. ..+||+||.++....+.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 45678899999999998 78899999999999999986 4689999999988777654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.4e-11 Score=105.59 Aligned_cols=190 Identities=19% Similarity=0.194 Sum_probs=154.0
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.+.++.|+.+|.+. +..++..|+..|..+.. . ..++.|+.+|.+++..+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~----------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDEDAWVRRAAADALGQIG---- 78 (211)
T ss_dssp GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCSCHHHHHHHHHHHHHHC----
T ss_pred HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC----------c-cHHHHHHHHHcCCCHHHHHHHHHHHHhhC----
Confidence 57899999999874 89999999999987643 1 37899999999999999999999998874
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~ 366 (458)
..++++.|+.+|.++++.++..|+.+|..+.. .++++.|+.++.++ .++..++.+|..+..
T Consensus 79 ------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 79 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 34679999999999999999999999998843 36889999999877 578889999998843
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
..+++.|+.++.+. ++.++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|.
T Consensus 142 ---------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp ---------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34789999999865 59999999999999843 235678888999999999999999999
Q ss_pred HHHhhHhhhh
Q 012677 447 RLNKAALIVH 456 (458)
Q Consensus 447 ~l~~~~~~~~ 456 (458)
.+.......+
T Consensus 200 ~~~~~~~~~~ 209 (211)
T 3ltm_A 200 THKSFNHHHH 209 (211)
T ss_dssp C---------
T ss_pred hcCCCCCCCC
Confidence 9987665544
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=96.37 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=46.3
Q ss_pred CCCCccccccccccc--cCCccCC--CcccccHHHHHHHHhcCCCCCCCCCccCCCCCC
Q 012677 75 GLPYEFRCPISGEIM--TDPVVLA--NGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVL 129 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~--~~p~~l~--cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~ 129 (458)
.+.+++.||||++.+ .|+++++ |||+||+.|+.+++..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467889999999988 4667766 999999999999997667799999999876543
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.9e-13 Score=95.90 Aligned_cols=52 Identities=27% Similarity=0.511 Sum_probs=45.6
Q ss_pred CCCCCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 74 LGLPYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....+.+.|+||++.+.+| +.++|||.||..||.+|+.. ..+||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3467788999999999988 78899999999999999986 5689999998764
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=97.10 Aligned_cols=58 Identities=24% Similarity=0.475 Sum_probs=48.0
Q ss_pred CCCCCccccccccccccCCc---cCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 74 LGLPYEFRCPISGEIMTDPV---VLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~---~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
....+.+.|+||++.+.+|. .++|||.||+.||.+|+.. ..+||+||..+....+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 34567789999999998773 4699999999999999985 5689999999987766544
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-13 Score=96.00 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=46.7
Q ss_pred CccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 78 YEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
+++.||||++.+.+| +.++|||.||..||.+|+.. ..+||.||.++....+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 457899999999987 77899999999999999986 6689999999987766543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-10 Score=107.00 Aligned_cols=194 Identities=9% Similarity=0.000 Sum_probs=132.0
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+++.|++.|. +++.+|..|+..|..+.. .+.++.|+.+|.+. +..++..|+.+|..+.....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTT
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccc
Confidence 46788888885 567888889888877642 35788899998874 78899999999988764322
Q ss_pred hhhhhhcCCCCHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLI-DSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
... ..++.|. .+++.++..+|..++.+|.++...+.. ....+++.|+.+|.++++.++..|+.+|.++.
T Consensus 87 ~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 100 1333343 245667889999999999988643211 12345778888888888888888888887764
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
. .++++.|+.++.++ .++..++.+|..+.... ..+++.|+.++.+. ++.++..|+.+|.
T Consensus 157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 3 24778888888766 46777777777764211 12456677777654 3777777777777
Q ss_pred HHh
Q 012677 404 NIC 406 (458)
Q Consensus 404 ~L~ 406 (458)
.+.
T Consensus 218 ~~~ 220 (280)
T 1oyz_A 218 YRK 220 (280)
T ss_dssp HTT
T ss_pred HhC
Confidence 664
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-10 Score=101.51 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=149.9
Q ss_pred hhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 167 RSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 167 ~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
...++.|++.|. .+..+|..|+..|..+.. .++++.|+.+|.+. +..++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~~-- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE----DAWVRRAAADALGQIGD-- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS----CHHHHHHHHHHHHHHCC--
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCC----CHHHHHHHHHHHHhhCC--
Confidence 357888999995 567888899888876532 46789999999874 88999999999988752
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
...++.|+.+|.+++..+|..|+.+|..+.. .++++.|+.+|+++++.++..|+.+|.++.
T Consensus 80 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 2378999999999999999999999998742 457999999999999999999999999984
Q ss_pred ccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 326 ILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 326 ~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
. ...++.|+.++.++ .++..++.+|..+.. ..+++.|..++.+. ++.++..|..+|.
T Consensus 141 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLE 199 (211)
T ss_dssp C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 2 35789999999877 578889999998843 23578889999865 4999999999999
Q ss_pred HHhccCch
Q 012677 404 NICFTDRT 411 (458)
Q Consensus 404 ~L~~~~~~ 411 (458)
.+......
T Consensus 200 ~~~~~~~~ 207 (211)
T 3ltm_A 200 THKSFNHH 207 (211)
T ss_dssp C-------
T ss_pred hcCCCCCC
Confidence 98876543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-10 Score=99.46 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=153.5
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.+..+.++.+|.+. +..++..|+.+|..+.. . ..++.|+.+|.+++..+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~----------~-~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDEDAWVRRAAADALGQIG---- 73 (201)
T ss_dssp HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----
T ss_pred CcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC----------h-hHHHHHHHHHcCCCHHHHHHHHHHHHhhC----
Confidence 46788999999885 89999999999987653 1 37899999999999999999999998763
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~ 366 (458)
..++++.|+.+|.++++.++..|+.+|..+.. ..+++.|+.+|.++ .++..++.+|..+..
T Consensus 74 ------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 74 ------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 24679999999999999999999999998743 35889999999877 478889999988743
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
.++++.|+.++.+. ++.++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|.
T Consensus 137 ---------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp ---------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45789999999865 59999999999999832 235678888899999999999999998
Q ss_pred HHH
Q 012677 447 RLN 449 (458)
Q Consensus 447 ~l~ 449 (458)
.+.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 765
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=90.60 Aligned_cols=53 Identities=21% Similarity=0.417 Sum_probs=45.0
Q ss_pred CCCCCccccccccccccCCccC---CCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
....++..|+||++.+.++..+ +|||.||..||.+|+.. ..+||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 3456778999999999888665 99999999999999986 45899999998653
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-12 Score=87.41 Aligned_cols=47 Identities=32% Similarity=0.496 Sum_probs=41.1
Q ss_pred CccccccccccccC----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 78 YEFRCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 78 ~~~~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
++..|+||++.+.+ ++.++|||.||..||.+|+... .+||+||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45679999999976 7778999999999999999864 78999998874
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-12 Score=88.72 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.+++.|+||++.+.+|++++|||+||+.||.+| ...||+||..+..+
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467889999999999999999999999999773 45799999998754
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-12 Score=87.05 Aligned_cols=49 Identities=24% Similarity=0.578 Sum_probs=42.1
Q ss_pred CCCccccccccccccC---CccCC-CcccccHHHHHHHHhcCCCCCCCCCccCC
Q 012677 76 LPYEFRCPISGEIMTD---PVVLA-NGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---p~~l~-cgh~fc~~ci~~~~~~~~~~CP~c~~~l~ 125 (458)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. ..+||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3456789999999987 77787 9999999999999985 668999998764
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.9e-12 Score=96.28 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=43.4
Q ss_pred CCCccccccccccccC---CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTD---PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~---p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..++..|+||++.+.+ ++.++|||.||..||.+|+.. +.+||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 3466789999999887 778899999999999999985 5689999998864
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.4e-12 Score=90.90 Aligned_cols=48 Identities=31% Similarity=0.560 Sum_probs=42.2
Q ss_pred CccccccccccccCC-ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDP-VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p-~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
++..||||++.+.+| +.++|||.||..|+.+|+.. ..+||.||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 456799999999997 67899999999999999985 5689999998864
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=89.24 Aligned_cols=51 Identities=27% Similarity=0.505 Sum_probs=42.8
Q ss_pred CCCcccccccccccc---CCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMT---DPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~---~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
..+...|+||++.+. +++.++|||.||..||.+|+.. ..+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 456678999999884 4577899999999999999986 45799999998653
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-12 Score=92.77 Aligned_cols=52 Identities=29% Similarity=0.561 Sum_probs=45.8
Q ss_pred CCCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 74 LGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 74 ~~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
....+.+.|+||++.+.+ +.++|||.||..||.+|+. ...+||.||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 346678899999999999 8899999999999999998 467899999998754
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.3e-10 Score=97.90 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=149.6
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.....+++.|. .+..+|..|+..|..+.. .+.++.|+.+|.+. +..++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~----~~~vr~~a~~~L~~~~~--- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDE----DAWVRRAAADALGQIGD--- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC---
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCC----CHHHHHHHHHHHHhhCC---
Confidence 46788999995 668889999998876542 36789999999864 88999999999987642
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
. ..++.|+.+|.++++.+|..|+.+|..+.. ..+++.|+.+|.++++.++..|+.+|..+..
T Consensus 75 -------~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 -------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred -------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 1 378999999999999999999999998732 4589999999999999999999999998842
Q ss_pred cccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 327 LLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
.+.++.|+.++.++ .++..++.+|..+.. ..+++.|..++.+. ++.++..|..+|..
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 46889999999877 578889999998832 23578889999865 49999999999987
Q ss_pred Hhc
Q 012677 405 ICF 407 (458)
Q Consensus 405 L~~ 407 (458)
|..
T Consensus 196 l~~ 198 (201)
T 3ltj_A 196 HKS 198 (201)
T ss_dssp CC-
T ss_pred HHh
Confidence 643
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-11 Score=91.41 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=43.3
Q ss_pred CCCccccccccccccCC---ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDP---VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p---~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..+...|+||++.+.++ +.++|||.||..||.+|+.. +.+||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34567899999999887 66899999999999999986 5689999998864
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-09 Score=99.98 Aligned_cols=196 Identities=9% Similarity=0.008 Sum_probs=150.1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
.+.++.|+..|.+. +..++..|+.+|.++.. .+.++.|+.+|.+++..+|..|+.+|..+.....
T Consensus 22 ~~~i~~L~~~L~~~----~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 22 KLNDDELFRLLDDH----NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp TSCHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HhhHHHHHHHHHcC----CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 57899999999874 88999999999988762 1378889999999999999999999998864322
Q ss_pred chhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 289 NKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
... ..++.|.. +++++++.++..++.+|.++...... ....+++.|+.++.++ .++..++.+|.++..
T Consensus 87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 13344442 45667899999999999998643321 1235789999999887 577888888887743
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
.++++.|+.++.+. +..++..|+++|..+.... ..+++.|..++.+.++.++..|+.+|
T Consensus 158 ----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN----------SDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -----------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC----------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc----------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 35899999999965 4899999999999985332 23567788888888888999999988
Q ss_pred HHHH
Q 012677 446 ERLN 449 (458)
Q Consensus 446 ~~l~ 449 (458)
..+.
T Consensus 217 ~~~~ 220 (280)
T 1oyz_A 217 SYRK 220 (280)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8775
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-11 Score=96.62 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=40.8
Q ss_pred ccccccccccccCCc------------------cCCCcccccHHHHHHHHh----cCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPV------------------VLANGQTFDRPCIQRWLD----EGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~------------------~l~cgh~fc~~ci~~~~~----~~~~~CP~c~~~l~~ 126 (458)
+..||||++.|.+|+ .++|||.||..||.+|+. ....+||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 457999999998875 679999999999999995 235689999998864
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-11 Score=101.16 Aligned_cols=54 Identities=26% Similarity=0.509 Sum_probs=46.8
Q ss_pred CCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 77 PYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
.+++.||||++.+.+| +.++|||+||..||.+|+.. ..+||+||+.+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccc
Confidence 4678899999999999 88999999999999999985 558999999988665433
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-10 Score=118.61 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=152.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhcccc--cchhH
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILL--ENKRR 333 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~ 333 (458)
+.| +++.|++++...|..|+++|.+|+.+...+..+...|+|..++. +|.+.+.+++..|+++|.||+.+. +.+..
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 556 77889999999999999999999987778888888888887654 788889999999999999999764 56777
Q ss_pred HHhhCcHHHHHHHhccC-----------------------CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhc
Q 012677 334 AVHAGAVRVILRKIMEN-----------------------SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRES 389 (458)
Q Consensus 334 i~~~g~v~~Lv~ll~~~-----------------------~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~ 389 (458)
+++.|++++|..++... ++.+.++.+|++||. +.+....+...|+++.|+..|.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 99999999999998531 133567889999987 777888888999999999998643
Q ss_pred --CChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh--hhCCHHHHHHHHHHHHHHHhh
Q 012677 390 --TCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA--ENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 390 --~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll--~~~~~~~~~~A~~~L~~l~~~ 451 (458)
...+++..|+.+|++|+..+..-... +.+.+....+..++ ..++...+..++++|+|+...
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~-i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQA-ITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHH-HHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 23689999999999999988765434 44455444333332 344555678899999998643
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-09 Score=112.73 Aligned_cols=273 Identities=14% Similarity=0.066 Sum_probs=190.2
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhh---hccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFG---ESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.|++.+. ++...+..|+..|..++...+..-..-. .....++.|+..+++. +..++..|+.+|.++...
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS----SPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS----SHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhc
Confidence 5777888885 4567888899999988876443311100 0024567777777753 889999999999988755
Q ss_pred chhhh-hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 245 DENKR-LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 245 ~~~~~-~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
..... .... .+++.|+.++..++.++|..++.+|..|+......-.-.-.+.++.++.++.+.++.++..|+..+..
T Consensus 205 ~~~~~~~~~~--~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHID--SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 33211 1111 37788888888999999999999999998754321110113578888888888899999999999999
Q ss_pred hcccccchhHHH--hhCcHHHHHHHh-----------cc-----------C--CcHHHHHHHHHHhcCCHHHHHHHHhcC
Q 012677 324 LCILLENKRRAV--HAGAVRVILRKI-----------ME-----------N--SLVDELLAILAMLSSHQDAIEEIGELG 377 (458)
Q Consensus 324 L~~~~~~~~~i~--~~g~v~~Lv~ll-----------~~-----------~--~~~~~a~~~L~~La~~~~~~~~i~~~g 377 (458)
++.....+..+- -...++.|+..| .+ . .++..+..+|..|+.... ..+.. .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~ 359 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-H 359 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-H
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-H
Confidence 987654332221 125677777777 22 1 346778888888876321 11211 2
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.++.+..++.+. +..+++.|+.+|.+|+.+........+ ...++.|+.++.+.++.++..|+++|.+++....
T Consensus 360 l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 360 ILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467777777754 599999999999999987754332222 4678899999999999999999999999997543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.8e-10 Score=120.82 Aligned_cols=271 Identities=10% Similarity=0.040 Sum_probs=186.6
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.++.+++.+. .+..+|..|+..|..+....+....... .+.++.|+.++.+. +..++..|+.+|..++.....
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~----~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDE----EPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHhCHH
Confidence 5666666664 4578899999999877654332211111 25677888877764 889999999999999875442
Q ss_pred h-hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHh-----------hc-----
Q 012677 248 K-RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLL-----------EE----- 308 (458)
Q Consensus 248 ~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL-----------~~----- 308 (458)
. ..... ++++.++.++++.+..++..|+.++..++.....+..+.. ...++.|+..+ .+
T Consensus 249 ~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 249 RLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 2 11222 3778888888888999999999999999875433332222 24566666666 22
Q ss_pred ------CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHH
Q 012677 309 ------GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIP 380 (458)
Q Consensus 309 ------~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~ 380 (458)
.+..++..|+.+|..|+..... .++ ..+++.+.+++.++ ..++.|+.+|..++......-.-.-.+.++
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 1234688899999988864431 122 24677788888776 578889999999998433211112235688
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTR-TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.|+.++.+. ++.++..|+++|.+++...... ..... ...++.|++.+.+.++.++..|+++|.++++...
T Consensus 404 ~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 404 HLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 899999865 5999999999999998743211 11112 3567888888888899999999999999997654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.9e-10 Score=117.97 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=148.1
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHH-HHHHHhcCCHHHHHHHHHHHHHhhccC-
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPL-LIDSVRTGTIETRRNAAAALFSLSALD- 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~-Lv~lL~~~~~~~~~~a~~~L~~Ls~~~- 287 (458)
+.|.++++.|+++ ++..+..|+.+|.||+.++..+..+...+ ++.. |..+|..++.++|..|+++|.||+...
T Consensus 34 ~~i~Pll~~L~S~----~~~~r~~A~~al~~l~~~~~~~~l~~~~~-~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSP----DAKSRTTAAGAIANIVQDAKCRKLLLREQ-VVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSS----CCSHHHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHcC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3466677888875 88999999999999999888889888886 5554 556788899999999999999999764
Q ss_pred -cchhHhhccCchHHHHHHhhcCC---------------------hHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHH
Q 012677 288 -SNKLIIGKLGAMTPLIDLLEEGH---------------------PLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVIL 344 (458)
Q Consensus 288 -~~~~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv 344 (458)
+.+..+.+.|++++|..+|+... ..+..+++.+|++|+...+ ....+...|+++.|+
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 55788999999999999985310 1234567889999997655 455677889999999
Q ss_pred HHhccC-----CcHHHHHHHHHHhcC-CHHHHHHHHhcCCH---HHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 345 RKIMEN-----SLVDELLAILAMLSS-HQDAIEEIGELGAI---PCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 345 ~ll~~~-----~~~~~a~~~L~~La~-~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
.+|.+. +++..++.+|+.|+. +++..+.+.+.|.. ..+..+.. + +...+..++++|.|+.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHh
Confidence 998543 478889999999999 67788888887753 23333333 3 3566788999999985
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-11 Score=89.00 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=41.2
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+.+++.|+||++.+.+|+.+||||. ||..|+.+| ..||+||.++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3456789999999999999999999 999999988 579999998864
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-10 Score=86.61 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=40.3
Q ss_pred CccccccccccccC--------------CccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 78 YEFRCPISGEIMTD--------------PVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 78 ~~~~C~ic~~~~~~--------------p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
++..|+||++.+.+ ++.+ +|||.||..||.+|+.. +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 45679999999876 4455 59999999999999986 56899999987643
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-10 Score=109.96 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=44.5
Q ss_pred ccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
...|+||++.+.+|+.++|||.||..|+..|+.....+||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4789999999999999999999999999999985567899999998754
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-10 Score=84.03 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=40.3
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
+.+.+.|+||++.+.+|+.+||||. ||..|+.. ...||+||.++...
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 3456789999999999999999999 99999964 35799999998653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-08 Score=102.78 Aligned_cols=255 Identities=13% Similarity=0.121 Sum_probs=182.4
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..+++.++ .+...|+.+...+..++..+++.. .-++..|.+-|.+. ++.++..|+.+|.++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~------~l~~n~l~kdL~~~----n~~ir~~AL~~L~~i~~~--- 116 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA------IMAVNSFVKDCEDP----NPLIRALAVRTMGCIRVD--- 116 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH------HTTHHHHGGGSSSS----SHHHHHHHHHHHHTCCSG---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH------HHHHHHHHHHcCCC----CHHHHHHHHHHHHcCChH---
Confidence 4556777774 567778888888888877544432 13466777777764 899999999999988622
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
.+.. .+++.+..+|.+.++.+|..|+.+|..+..... ..+.+.+.++.|..+|.+.++.++..|+.+|..++..
T Consensus 117 --~~~~--~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 117 --KITE--YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp --GGHH--HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred --HHHH--HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 2222 256778999999999999999999999987432 2333367899999999999999999999999999886
Q ss_pred ccch-hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 328 LENK-RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 328 ~~~~-~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
.... ......+.+..|+..+.+. ..+...+.+|..++. .++.... .++.+..++++. +..+...|++++.
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l~~~-~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHA-NSAVVLSAVKVLM 264 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCSCSS-TTHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 6532 1112235677777777655 356778888888876 3333322 356777777754 5899999999999
Q ss_pred HHhcc---CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 404 NICFT---DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 404 ~L~~~---~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.+... ++...+.++ ....+.|+.++. .++.++..|...|..+...
T Consensus 265 ~l~~~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 265 KFLELLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HSCCSCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 98752 333333333 345577776654 7788999999998888764
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-10 Score=78.91 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=42.7
Q ss_pred CCccccccccccccCCccC--CCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 77 PYEFRCPISGEIMTDPVVL--ANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l--~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.++..|+||++...+++.+ ||||. ||..|+.+|+.. ...||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 3556799999999999987 99999 899999999985 5689999998853
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.6e-10 Score=86.71 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=40.2
Q ss_pred CccccccccccccCC------------------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDP------------------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p------------------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
++..|+||++.|.++ +.++|||.||..||.+|+.. +.+||+||..+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 345799999998876 23689999999999999985 6789999998653
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-10 Score=94.69 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=48.4
Q ss_pred CCCccccccccccccCC-------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCccc
Q 012677 76 LPYEFRCPISGEIMTDP-------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPN 132 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p-------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n 132 (458)
..+...|+||++.+.+| +.++|||.||..||.+|+.. ..+||+||..+....+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 35678899999999887 77899999999999999986 5689999999987776554
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.4e-08 Score=95.76 Aligned_cols=274 Identities=9% Similarity=0.077 Sum_probs=184.8
Q ss_pred hhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhC-chhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-S--SLSDQKEAAKELRLLTKRM-PLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.|++.+. + +...+..|+..|..++.+. +..-..... ..++.++..|.+. ..+..++..|+.++.++...
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 5777888885 4 6778889999999998754 222222222 4677788888763 11578999999999886532
Q ss_pred ch-hh-hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE-NK-RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~-~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
-. +- ...... .+++.|...+.+++.+++..++.+|..++...... ......+.++.++..+++.++.++..|+..+
T Consensus 205 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 205 TKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp THHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 11 10 011111 14666666777789999999999999998654221 1111116788888888888999999999999
Q ss_pred HHhccccc------------------chhHHHh---hCcHHHHHHHhccC---------CcHHHHHHHHHHhcCCHHHHH
Q 012677 322 FSLCILLE------------------NKRRAVH---AGAVRVILRKIMEN---------SLVDELLAILAMLSSHQDAIE 371 (458)
Q Consensus 322 ~~L~~~~~------------------~~~~i~~---~g~v~~Lv~ll~~~---------~~~~~a~~~L~~La~~~~~~~ 371 (458)
..++.... ....+++ ..++|.|++.|.+. .++..|+.+|..|+..-. +
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~ 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H
Confidence 98876531 1111222 34677777777431 467788888888876211 1
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.+. ...++.+...+.+. +..+++.|+.+|..++.+.. ......+ ...++.|+.++.+.++.++..|+++|.+++.
T Consensus 362 ~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 362 DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222 23456666777754 58999999999999998653 2111222 4678899999999999999999999999997
Q ss_pred hHh
Q 012677 451 AAL 453 (458)
Q Consensus 451 ~~~ 453 (458)
.-.
T Consensus 438 ~~~ 440 (462)
T 1ibr_B 438 LLP 440 (462)
T ss_dssp HGG
T ss_pred hcc
Confidence 654
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-10 Score=78.52 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=42.1
Q ss_pred CccccccccccccCCccC--CCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTDPVVL--ANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l--~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
....|+||++...|++++ ||||. ||..|+.+|+.. ...||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 456799999999999887 99998 999999999975 4689999998853
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-10 Score=86.12 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=47.4
Q ss_pred CccccccccccccCCccC---CCcccccHHHHHHHHhc----C---CCCCCC--CCcc--CCCCCCcccHHHHHHHHHHH
Q 012677 78 YEFRCPISGEIMTDPVVL---ANGQTFDRPCIQRWLDE----G---NRTCPQ--TRQV--LSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l---~cgh~fc~~ci~~~~~~----~---~~~CP~--c~~~--l~~~~~~~n~~l~~~i~~~~ 143 (458)
+.+.||||++.+.+|+.+ +|||.||+.|+.+|+.. + ...||. |+.. ++...+. +.....++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence 467899999999998764 79999999999999863 2 248999 9988 5543321 222245555555
Q ss_pred H
Q 012677 144 K 144 (458)
Q Consensus 144 ~ 144 (458)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=97.55 Aligned_cols=262 Identities=11% Similarity=0.059 Sum_probs=180.1
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
++.|...+. .+..+|..|...|..++...+.. .+.. ..++.+..+..+. +...+..|+.+|..++..-..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~--~l~~~l~~l~~~~----~~~~R~~a~~~l~~~~~~~~~- 159 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEA--HFVPLVKRLAGGD----WFTSRTSACGLFSVCYPRVSS- 159 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHH--THHHHHHHHHTCS----SHHHHHHHGGGHHHHTTTSCH-
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHH--HHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHhcCH-
Confidence 333433333 45788999999999998765432 1222 3455565665543 678888898888888755432
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
.... .++|.+..++..++..+|..|+.+|..++..-... ......++.|..+++++++.++..|+.+|..++..-
T Consensus 160 -~~~~--~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 160 -AVKA--ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp -HHHH--HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred -HHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 1222 37788888889999999999999999998653322 223567888999998889999999999999987643
Q ss_pred cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHh
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNIC 406 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~ 406 (458)
+.. .....++|.+.+++.++ .++..++.+|..++..-.. .......++.++.++.+. ++.++..|+.+|..++
T Consensus 235 ~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 235 PQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFC 309 (588)
T ss_dssp CHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred CHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHH
Confidence 321 23345788888888877 4688899999988762111 112334688999999865 4899999999999998
Q ss_pred ccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 407 FTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 407 ~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
..-+...+........++.+..++.+.++.++..++++|..++.
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 76543211101113456677777777777788777777776654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=97.14 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=175.5
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.++.+.+.+. .++.+|..|+.++..+...+++. +.+ .+.++.|..+|.+. ++.++..|+.+|..++.+.+.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~-~~~~~~l~~lL~d~----d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VED-QGFLDSLRDLIADS----NPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHH-HHHHHHHHHTTSCS----CHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccc-ccHHHHHHHHhCCC----ChhHHHHHHHHHHHHHhhCCC
Confidence 3445666664 56889999999999998865542 223 47789999999874 899999999999999877643
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+.-..+.++.|+..+...++-.+...+.+|..+...++.. ....++.+..+|++.++.++..|++++.++...
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 2111111124566777777778888887778777776433211 134677888888888999999999999998742
Q ss_pred ---ccchhHHHhhCcHHHHHHHhccC-CcHHHHHHHHHHhcC-C------------------HHHHHHHH-------hcC
Q 012677 328 ---LENKRRAVHAGAVRVILRKIMEN-SLVDELLAILAMLSS-H------------------QDAIEEIG-------ELG 377 (458)
Q Consensus 328 ---~~~~~~i~~~g~v~~Lv~ll~~~-~~~~~a~~~L~~La~-~------------------~~~~~~i~-------~~g 377 (458)
++.....+-..+.++|+.++.++ .++..++.+|..++. + ...|...+ ...
T Consensus 270 ~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 270 LPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp CCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChh
Confidence 22222222344567777766533 566677777776653 1 11122221 122
Q ss_pred C----HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 378 A----IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 378 ~----i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
. ++.|.+++.+. +...+..+++++..++...+... ...++.|+.++....+.+...+...+..+-+..+
T Consensus 350 nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 350 NIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp THHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 2 34444555544 58999999999999998765322 3467888888887777777777777777755433
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.3e-09 Score=75.27 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=40.2
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..+...|+||++...+++.+||||. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4457789999999999999999999 99999983 3579999998865
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-09 Score=81.33 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=40.0
Q ss_pred CCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~~ 127 (458)
.++..|+||++.+.+|+.+||||. ||..|+..|. .||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 345679999999999999999999 9999998763 799999998653
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-06 Score=89.89 Aligned_cols=220 Identities=10% Similarity=0.047 Sum_probs=120.8
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..++..+. ++...|..|+..|..++..-...+ .. ...++.|...+ + .+.+++..++..|..+...-..
T Consensus 11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~~--~~l~~~L~~~~-d----~~~~vr~~~~~~L~~~~~~~~~ 81 (588)
T 1b3u_A 11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TR--SELLPFLTDTI-Y----DEDEVLLALAEQLGTFTTLVGG 81 (588)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HH--HTHHHHHHHTC-C----CCHHHHHHHHHHHTTCSGGGTS
T ss_pred cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--HH--HHHHHHHHHhc-C----CcHHHHHHHHHHHHHHHhccCc
Confidence 4777888884 567888889888887765321111 11 23556666554 2 3678888888888877653211
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
..... ..++.|..++.+++..+|..|+.+|.+++...... . ...-.++.+..+..+++...|..|+.+|..++..
T Consensus 82 -~~~~~--~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 82 -PEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp -GGGGG--GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred -HHHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-H-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 11222 36777777777788899999999999887643221 1 1112344444444445556666666666665543
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
-... .....++.+..++.++ .++..++.+|..++..-... ......++.|..++.+. +..++..|+.+|..+
T Consensus 157 ~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 157 VSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNI 230 (588)
T ss_dssp SCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHH
T ss_pred cCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence 2211 1223455555555544 35555666666554311110 11123344555555432 255555555555555
Q ss_pred hcc
Q 012677 406 CFT 408 (458)
Q Consensus 406 ~~~ 408 (458)
+..
T Consensus 231 ~~~ 233 (588)
T 1b3u_A 231 AQL 233 (588)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=75.75 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=41.9
Q ss_pred CCccccccccccc--cCCccCCCc-----ccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 012677 77 PYEFRCPISGEIM--TDPVVLANG-----QTFDRPCIQRWLDEG-NRTCPQTRQVLSHT 127 (458)
Q Consensus 77 ~~~~~C~ic~~~~--~~p~~l~cg-----h~fc~~ci~~~~~~~-~~~CP~c~~~l~~~ 127 (458)
.++..|+||++.+ .+++++||+ |.||..||.+|+... ..+||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4556899999876 468888996 999999999999864 35899999998653
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-09 Score=84.29 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=0.4
Q ss_pred ccccccccccccCCc-----------------c-CCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPV-----------------V-LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~-----------------~-l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+..|+||++.|.+|. . ++|||.||..||.+|+.. +.+||.||.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 357999999987742 2 489999999999999986 6689999998643
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-06 Score=92.03 Aligned_cols=250 Identities=14% Similarity=0.071 Sum_probs=141.6
Q ss_pred hhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhh
Q 012677 172 SLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRL 250 (458)
Q Consensus 172 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 250 (458)
..++.+ +.+.+.++-+.-.+..++..+++... -++..|.+-|.+. ++.++..|+.+|.++... .
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~----n~~vr~lAL~~L~~i~~~-----~ 138 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHS----TQFVQGLALCTLGCMGSS-----E 138 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCS----SSHHHHHHHHHHHHHCCH-----H
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCC----CHhHHHHHHHHHHhcCCH-----H
Confidence 344444 34455565555566666654433211 1244555556553 777778888888777631 2
Q ss_pred hhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc
Q 012677 251 VAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN 330 (458)
Q Consensus 251 i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~ 330 (458)
+.. .+++.+..+|.+.++.+|..|+.++.++...... +. .+.++.|..+|.+.++.++..|+.+|..++..+..
T Consensus 139 ~~~--~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 139 MCR--DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp HHH--HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 333 2667777778888888888888888877654321 11 25666777777777778888888888887765432
Q ss_pred hhHHHhhCcHHHHHHHhcc-----------------CCcHHHHHHHHHHhcC-CHHHHHHH-------------------
Q 012677 331 KRRAVHAGAVRVILRKIME-----------------NSLVDELLAILAMLSS-HQDAIEEI------------------- 373 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~-----------------~~~~~~a~~~L~~La~-~~~~~~~i------------------- 373 (458)
..... ...++.|+++|.+ +..+...+.+|..++. +++....+
T Consensus 213 ~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 213 MLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 11111 2455555555442 1234445555555554 22211110
Q ss_pred ----------H--------hcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCH
Q 012677 374 ----------G--------ELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTS 435 (458)
Q Consensus 374 ----------~--------~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 435 (458)
. ...++..|..++.++ ++.++..|+.+|..++...+. ++ ......++..+.+.+.
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~----~~--~~~~~~i~~~l~d~d~ 364 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHN----AV--QRHRSTIVDCLKDLDV 364 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHH----HH--GGGHHHHHHGGGSSCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHH----HH--HHHHHHHHHHccCCCh
Confidence 0 012456777777754 478888888888888765432 12 1233445555555566
Q ss_pred HHHHHHHHHHHHHHh
Q 012677 436 RAKRKANGILERLNK 450 (458)
Q Consensus 436 ~~~~~A~~~L~~l~~ 450 (458)
.++.+|..+|..++.
T Consensus 365 ~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 365 SIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666654
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=98.59 E-value=6.4e-09 Score=99.43 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCccCCCccc-ccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 76 LPYEFRCPISGEIMTDPVVLANGQT-FDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l~cgh~-fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
+.+++.|+||++.+.+|+.+||||. ||+.|+..| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567899999999999999999999 999999987 479999998864
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.7e-07 Score=96.49 Aligned_cols=261 Identities=11% Similarity=0.088 Sum_probs=173.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh---hhhhhcC
Q 012677 179 SSLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN---KRLVAEN 254 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~---~~~i~~~ 254 (458)
.+...|..|+..+..++.... ..-..... ..++.|+..+.+. ++.++..++++|..++..-.. ......
T Consensus 381 ~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~- 453 (861)
T 2bpt_A 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQ----SLQVKETTAWCIGRIADSVAESIDPQQHLP- 453 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-
T ss_pred CChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-
Confidence 456788889999998886532 22122222 4678888888764 789999999999988754221 112222
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc--chhHhhc--cCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccc
Q 012677 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS--NKLIIGK--LGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 255 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~ 328 (458)
.++|.|+..++.. ..++..|+++|.+++..-. ....+.. ...++.|+.++.+. ++.++..++.+|..+....
T Consensus 454 -~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 454 -GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp -HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 2678888888775 8999999999999876421 0111211 45678888888754 3789999999999998755
Q ss_pred cchhHHHhhCcHHHHHHHhccC-----------------CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcC
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN-----------------SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIREST 390 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~-----------------~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~ 390 (458)
.....-.-...++.+++.+.+. .++..++.+|..++. .+..-.... ...++.++.++....
T Consensus 532 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~ 610 (861)
T 2bpt_A 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKD 610 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCC
Confidence 4332212224677777766521 345667888887765 222101111 134677778887543
Q ss_pred Ch-hHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 391 CE-RNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 391 ~~-~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
. .+++.++.++..++...+......+ ...++.|...+.+.++.++..|..++..+++..
T Consensus 611 -~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 611 -SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp -GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 4 8999999999999876554443444 347788888887777889999999998887654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=104.99 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=184.3
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..+++.+ +.|...|..|...|.+........-..-.. ...++.|++.|.+. +..++..|+.+|.+++..-.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~~il~~Ll~~L~d~----~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDK----NGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCC
Confidence 3577788887 567889999998888765432110000011 24577788888753 88999999999999886533
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch------hHhhccCchHHHHHHhh-cCChHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK------LIIGKLGAMTPLIDLLE-EGHPLAMKDVAS 319 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~ 319 (458)
. .... .+++.|+..|.+++..+|..|+.+|..++..-... ..-.-...+|.|+..+. ++++.++..|+.
T Consensus 81 ~--~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~ 156 (1230)
T 1u6g_C 81 E--YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALD 156 (1230)
T ss_dssp H--HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred H--HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 2 1222 26777888888888899999999999887543221 01112457899999998 478899999999
Q ss_pred HHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 320 AIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
+|..++........-.-...++.|+..|.++ .++..|+.+|..++...... + -...++.|+..|.+..+...+..
T Consensus 157 ~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~ 233 (1230)
T 1u6g_C 157 IMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRT 233 (1230)
T ss_dssp HHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHH
Confidence 9999985322111111245677777777766 57888999999998732211 1 22358888888886544567788
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++.++..++...+......+ ...++.+...+.+.++.+++.|..++..+++..
T Consensus 234 a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 234 YIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 89999988876543322211 356778888888778889999999999888754
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-05 Score=83.02 Aligned_cols=248 Identities=10% Similarity=0.060 Sum_probs=171.3
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
++.+.+.+. .++.+|..|+.++..+...+++.. + +.++.|..+|.+. |+.++..|+.+|..++.+.+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~--~~~~~l~~lL~D~----d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----E--MFLPATKNLLNEK----NHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----G--GGGGGTTTSTTCC----CHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----H--HHHHHHHHHhCCC----CHhHHHHHHHHHHHHHHhChHH
Confidence 455555553 668899999999999998766432 2 5677778888764 8999999999999998765432
Q ss_pred hhhhcCCCCHHHHHHHHhc---------------CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhc-----
Q 012677 249 RLVAENPLAIPLLIDSVRT---------------GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEE----- 308 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----- 308 (458)
..... ..+|.++.+|.. .++-.+...+.+|..+...+... ....++.|..++..
T Consensus 214 ~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 214 LAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSK 287 (618)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSS
T ss_pred HHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhcccccc
Confidence 22223 378888887763 36778888899999988755321 12345566666532
Q ss_pred -CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHH
Q 012677 309 -GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 309 -~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~l 385 (458)
.+..+...|+.++.++...+. +. ..+++.|..++.++ .++..++.+|..++... ..++. .....++.+
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~ 358 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDC 358 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHG
T ss_pred chHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHH
Confidence 245788888999888754321 11 24678888888755 78888999998887631 12222 235677777
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
+.+. +..++..|+.+|..|+.... ...+ +.-|...+.+.++..++.+...|..++..
T Consensus 359 l~d~-d~~Ir~~alelL~~l~~~~n--v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 359 LKDL-DVSIKRRAMELSFALVNGNN--IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp GGSS-CHHHHHHHHHHHHHHCCSSS--THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred ccCC-ChhHHHHHHHHHHHHccccc--HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 7754 48999999999999987542 2222 34555666667788888888888888764
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=94.96 Aligned_cols=268 Identities=12% Similarity=0.061 Sum_probs=171.1
Q ss_pred hHHhhc-CCcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh---
Q 012677 173 LLEKMS-SSLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN--- 247 (458)
Q Consensus 173 Lv~~l~-~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~--- 247 (458)
+...+. .+...|..|+..+..++.... ........ ..++.|+..|.+. +..++..|+++|.+++..-..
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~----~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDP----SVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhCchhcc
Confidence 333443 457788899999998887543 22222233 5788899998864 789999999999998865332
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc------------chhHhhc--cCchHHHHHHhhcC---C
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS------------NKLIIGK--LGAMTPLIDLLEEG---H 310 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~------------~~~~i~~--~g~i~~Lv~lL~~~---~ 310 (458)
...... .+++.|+..|.++ ..++..++++|.+++..-. ....+.. ...++.|+.++... +
T Consensus 445 ~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~ 521 (876)
T 1qgr_A 445 NDVYLA--PLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ 521 (876)
T ss_dssp STTTHH--HHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS
T ss_pred cHHHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcch
Confidence 112222 2677788888774 8899999999999985421 0111211 35677777877654 3
Q ss_pred hHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc----------C-------CcHHHHHHHHHHhcCC-H-HHHH
Q 012677 311 PLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME----------N-------SLVDELLAILAMLSSH-Q-DAIE 371 (458)
Q Consensus 311 ~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~----------~-------~~~~~a~~~L~~La~~-~-~~~~ 371 (458)
..++..+..+|..++........-.-...++.+++.+.. . .++..++.+|..++.. + ..-.
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 567888888888887644322221223466666665542 1 2345677888888762 2 1111
Q ss_pred HHHhcCCHHHHHHHHhhcCC-hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHHHHH
Q 012677 372 EIGELGAIPCLLRIIRESTC-ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILERLN 449 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~~l~ 449 (458)
.+. ...++.|+.++.+..+ ..+++.++.++..++...+......+ ...++.|...+... ++.++..|.+++..+.
T Consensus 602 ~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 602 QIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp TTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 111 2356777788875421 37899999999999875433332333 23667888888776 7889999999999988
Q ss_pred hhH
Q 012677 450 KAA 452 (458)
Q Consensus 450 ~~~ 452 (458)
+..
T Consensus 679 ~~~ 681 (876)
T 1qgr_A 679 RAL 681 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-06 Score=89.09 Aligned_cols=274 Identities=9% Similarity=0.073 Sum_probs=180.7
Q ss_pred hhhhhHHhhc-C--CcHHHHHHHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-S--SLSDQKEAAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~--~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.+++.+. + +...|..++..+..++.... ..-.... ...++.+...+.+. +.+..++..|+.+|.++...
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~--~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHH
Confidence 5667777774 4 66788889999998887532 1111111 24566677777653 11578899999999887643
Q ss_pred ch-h-hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHH
Q 012677 245 DE-N-KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAI 321 (458)
Q Consensus 245 ~~-~-~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 321 (458)
-. + ....... .+++.+...+...+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+
T Consensus 205 ~~~~~~~~~~~~-~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 205 TKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHhHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 11 1 1111111 25676777777788999999999999988643221 1122236788888888778889999999999
Q ss_pred HHhcccccc----------------h--hHHH---hhCcHHHHHHHhcc-------C--CcHHHHHHHHHHhcCCHHHHH
Q 012677 322 FSLCILLEN----------------K--RRAV---HAGAVRVILRKIME-------N--SLVDELLAILAMLSSHQDAIE 371 (458)
Q Consensus 322 ~~L~~~~~~----------------~--~~i~---~~g~v~~Lv~ll~~-------~--~~~~~a~~~L~~La~~~~~~~ 371 (458)
..++..... + .... -...++.+++.|.. . .++..++.+|..|+..-. .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~ 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--G
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--H
Confidence 888754210 0 0011 13467778888742 1 467778888888866321 1
Q ss_pred HHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
.++ ...++.+...+.+. +..+++.|+.+|..++.+.. ......+ ...++.|+..+.+.++.++..|+++|.+++.
T Consensus 362 ~~~-~~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 362 DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp GGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 111 12355555666644 58999999999999998664 3232333 4578888998988899999999999999997
Q ss_pred hHh
Q 012677 451 AAL 453 (458)
Q Consensus 451 ~~~ 453 (458)
..+
T Consensus 438 ~~~ 440 (876)
T 1qgr_A 438 LLP 440 (876)
T ss_dssp HCG
T ss_pred hCc
Confidence 643
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=90.72 Aligned_cols=271 Identities=13% Similarity=0.094 Sum_probs=175.0
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.++.++..+. .++.+|..++..|..++..-... ..... ...++.|+..+.+ ++.++..|+.+|.+++..-
T Consensus 412 il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~-----~~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 412 ALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD-----HPKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc-----ChHHHHHHHHHHHHHHHhc
Confidence 4455555554 45677888888888887642211 01111 2457777877764 4788999999998887542
Q ss_pred h-----hhhhhhcCCCCHHHHHHHHhcCC--HHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC---------
Q 012677 246 E-----NKRLVAENPLAIPLLIDSVRTGT--IETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--------- 309 (458)
Q Consensus 246 ~-----~~~~i~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------- 309 (458)
. .-..... .+++.|+.++.+.+ ..+|..++.+|..+.........-.-...++.++..+...
T Consensus 485 ~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 485 AEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp SSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred ccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 1 1112222 26777888887543 6889999999999986543321111124567777766531
Q ss_pred ------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCH--HHHHHHHhcCC
Q 012677 310 ------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQ--DAIEEIGELGA 378 (458)
Q Consensus 310 ------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~--~~~~~i~~~g~ 378 (458)
...++..++.+|.+++..-.....-.-...++.++.++.+. .+++.++.++..++..- +....+ ...
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i 640 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETF 640 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHH
Confidence 34567788899988876443211111235777788888755 46888888888887622 122222 125
Q ss_pred HHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCC--HHHHHHHHHHHHHHHhhHh
Q 012677 379 IPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGT--SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 379 i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~--~~~~~~A~~~L~~l~~~~~ 453 (458)
++.|+..+.+ .+..++..++.++..++...+......+ ...++.+...+.+.+ +.++..+..++..+..+..
T Consensus 641 ~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 641 SPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 7888888864 4588999999999999876654443333 456777777777654 7799999999998887643
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=86.30 Aligned_cols=265 Identities=9% Similarity=-0.001 Sum_probs=172.8
Q ss_pred hhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-hh-
Q 012677 172 SLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-NK- 248 (458)
Q Consensus 172 ~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~~- 248 (458)
.++..+ +.+...|..|-..|..+...+ . .+.+..|+.++.+. +.+..++..|+..|.|+..... ..
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~-~~~~~~L~~il~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--------L-PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------h-HHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhccccchHHH
Confidence 444443 677888999998888766521 1 35566677777653 2367888999999998864321 00
Q ss_pred -------hhhhc--CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHH
Q 012677 249 -------RLVAE--NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDV 317 (458)
Q Consensus 249 -------~~i~~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a 317 (458)
..+-. ...+...|+..|.+.+..+ ..++.+|..++..+.... .-.+.++.|+..+.++ ++.++..|
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 00000 0113345777787777777 888889999887542110 1167899999999988 89999999
Q ss_pred HHHHHHhccccc-chhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCC-HHHHH-HHHhcCCHHHHHHHHhhcC
Q 012677 318 ASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSSH-QDAIE-EIGELGAIPCLLRIIREST 390 (458)
Q Consensus 318 ~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~-~~~~~-~i~~~g~i~~Lv~ll~~~~ 390 (458)
+.+|..++..-. ....-.-..+++.++.+|.++ .++..|+.++.++... .++-. .....-.++.|.+.+.+ .
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 229 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-P 229 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-C
Confidence 999999986431 111111135788888888765 3678899999887652 22110 00111135555566654 4
Q ss_pred ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 391 CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 391 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+..++..++.+|..++...+......+. ...++.+...+.+.++.++..|...+..+++..
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 5899999999999999766543222221 155666777777788899999999999888753
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.5e-07 Score=65.23 Aligned_cols=48 Identities=17% Similarity=0.466 Sum_probs=38.6
Q ss_pred ccccccccccccCCccC-CCcccccHHHHHHHHhcC-CCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEG-NRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~ 126 (458)
...|+||.+++..-..- .|+|.|+..||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35699999988744333 699999999999999853 2689999998764
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.4e-06 Score=74.08 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=135.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcc-CcchhHhhccCchHHHHHHhh-cCChHHHHHHHHHHHHhcccccchhHHHh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSAL-DSNKLIIGKLGAMTPLIDLLE-EGHPLAMKDVASAIFSLCILLENKRRAVH 336 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~i~~ 336 (458)
+.+...+.+.+...|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4477888899999999999999998765 2211100 1345777888884 88999999999999999964322222222
Q ss_pred hCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccC-ch-h
Q 012677 337 AGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTD-RT-R 412 (458)
Q Consensus 337 ~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~-~~-~ 412 (458)
...++.|+..+.+. .++..+..+|..++..... . ..++.|...+.+. ++.++..++..|..+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCc
Confidence 45889999999887 5788899999998774321 1 1367778888854 5999999999999965443 22 1
Q ss_pred HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 413 TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 413 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
....+ ...++.|..++.+..+.+|..|..+|..+...-.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 12233 3578899999999999999999999999886654
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-05 Score=67.99 Aligned_cols=220 Identities=12% Similarity=0.053 Sum_probs=159.3
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 287 (458)
+.+..|..+|.+. |..++.+++.+|..+-+. ..-+....+. +++.++.++++.|..+...|..+|..|-.+.
T Consensus 33 ~~l~~L~~LL~dk----D~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 33 RALFLILELAGED----DETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 5677888898764 899999999999999877 3355566664 8999999999999999999999999987654
Q ss_pred cc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhc
Q 012677 288 SN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLS 364 (458)
Q Consensus 288 ~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La 364 (458)
+- ..... -.+..|..++.++++-.+.+|+..|..|.-.... .+++..+.+++.+. .++..++.+|.+++
T Consensus 107 pL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 107 PMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp CBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred CCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 32 22222 2477888999999999999999999999322222 24778888999766 46777899999998
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHh-hhCCHHHHHHHH
Q 012677 365 SHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLA-ENGTSRAKRKAN 442 (458)
Q Consensus 365 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~A~ 442 (458)
...+....+ .+.+.-+-.+|++. ++.+++.|+.+|..+.+.+= ++. +-.-.+....+-.+. ..|.|..+.+|.
T Consensus 179 ~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi~~~~--~~~~~~~~~~v~~l~~~~~~~~~~~ka~ 253 (265)
T 3b2a_A 179 NSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFPLLENV--KIELLKISRIVDGLVYREGAPIIRLKAK 253 (265)
T ss_dssp GGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCCCSCC--HHHHHHHHHHHHHGGGCSSCHHHHHHHH
T ss_pred cccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcccHhH--HHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 732211111 12344456778854 69999999999999998753 211 111133444455566 678999999998
Q ss_pred HHHHHH
Q 012677 443 GILERL 448 (458)
Q Consensus 443 ~~L~~l 448 (458)
.+...+
T Consensus 254 ~v~~~l 259 (265)
T 3b2a_A 254 KVSDLI 259 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-06 Score=59.62 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=39.6
Q ss_pred CccccccccccccCCccCCCc--c---cccHHHHHHHHhc-CCCCCCCCCccCC
Q 012677 78 YEFRCPISGEIMTDPVVLANG--Q---TFDRPCIQRWLDE-GNRTCPQTRQVLS 125 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cg--h---~fc~~ci~~~~~~-~~~~CP~c~~~l~ 125 (458)
+...|.||++...+|.++||. + .||+.|+.+|+.. ++.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 455799999887888888864 3 8999999999974 5679999998875
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=73.55 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=128.3
Q ss_pred hHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccC-CCCCCCChhHHHHHHHHHHhcccCch-hhh
Q 012677 173 LLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLS-PGRADTDPGLLEDLITTILNLSIHDE-NKR 249 (458)
Q Consensus 173 Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~~a~~~L~~ls~~~~-~~~ 249 (458)
+.+.+ +.+...|..|+..|..+....+.... ......++.|...+. +. +..++..|+.+|..|+..-. .-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~----~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDS----NVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHhhhHH
Confidence 55566 46789999999999999886443211 110134566677773 53 88999999999999985422 112
Q ss_pred hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc-
Q 012677 250 LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL- 328 (458)
Q Consensus 250 ~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~- 328 (458)
..+. .++|.|+..+...+..+|..|..+|.++...... ...++.|...|++.++.++..++..|..+....
T Consensus 94 ~~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 94 NYAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 2333 2788899999999999999999999999764321 235788888999889999999999999965432
Q ss_pred cc--hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 329 EN--KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 329 ~~--~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
.. -...+ ...+|.|+.+|.+. .++..|..+|..++.
T Consensus 166 ~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 166 PTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 21 11222 36889999999876 688889888888865
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.6e-05 Score=67.15 Aligned_cols=197 Identities=15% Similarity=0.073 Sum_probs=145.2
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCch-hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPL-FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.+..|++.|. .|..++..++..|..+.++-+. .+..+.+ ..++.++.++++. |..+.-.|+.+|..|-.+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk~~----dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALSQE----NEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCCST----THHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHhcc----chhHHHHHHHHHHHHHcCC
Confidence 46777888885 5688999999999998887433 4444555 7899999999875 8899999999999887665
Q ss_pred h-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 246 E-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 246 ~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
+ ....+.. +..+|..++.+++.-.+..|+..|..+.-... ..+++..|.+++.+.+..++..++.+|.++
T Consensus 107 pL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 107 PMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp CBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5 3444444 45778999999999999999999999832221 234677888999888999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHh
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIR 387 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~ 387 (458)
+...++..- -.+++.-+-.+|.+. .+++.|+.+|..+.+.|-- .+.++.+.+++.
T Consensus 178 a~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~ 234 (265)
T 3b2a_A 178 LNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISR 234 (265)
T ss_dssp GGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHH
T ss_pred hcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHH
Confidence 986653332 123444455667665 5799999999999885321 344555555443
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=90.51 Aligned_cols=226 Identities=13% Similarity=0.084 Sum_probs=154.8
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..+++.+. .+...|..|+..|..++...+. ... ...++.|+..|.+. +..++..|+.+|..++..-.
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~--~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l~ 118 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQV--ETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGELP 118 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHH--HHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHH--HHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCC
Confidence 45677777775 5678899999999999865433 111 24567777777654 66788888888887764322
Q ss_pred h-------hhhhhcCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHH
Q 012677 247 N-------KRLVAENPLAIPLLIDSVR-TGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDV 317 (458)
Q Consensus 247 ~-------~~~i~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 317 (458)
. ...... .++|.|+..+. +++..++..|+.+|..++..... -.. .-...++.|+..|.++++.+|..|
T Consensus 119 ~~~~~~~~~~~~~~--~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a 195 (1230)
T 1u6g_C 119 PASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRT 195 (1230)
T ss_dssp -----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHH
T ss_pred CcccccchHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHH
Confidence 1 112222 37888999998 57899999999999998753211 101 114467778888888889999999
Q ss_pred HHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCC-HHHHHHHHh--cCCHHHHHHHHhhcCC
Q 012677 318 ASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSH-QDAIEEIGE--LGAIPCLLRIIRESTC 391 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~-~~~~~~i~~--~g~i~~Lv~ll~~~~~ 391 (458)
+.+|..++...+... -...++.|++.|.+. ..+..++.++..++.. +. .+.. ...++.++..+.+. +
T Consensus 196 ~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~-~ 268 (1230)
T 1u6g_C 196 IIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVD-D 268 (1230)
T ss_dssp HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSC-C
T ss_pred HHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCC-C
Confidence 999999987554321 234688888888644 4666677777777652 21 1211 34688888888854 5
Q ss_pred hhHHhHHHHHHHHHhccCchh
Q 012677 392 ERNKENCAAILYNICFTDRTR 412 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~ 412 (458)
+.+++.++.++..++...+..
T Consensus 269 ~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp TTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHChHH
Confidence 899999999999998865443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00024 Score=74.00 Aligned_cols=276 Identities=9% Similarity=0.022 Sum_probs=153.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhcc
Q 012677 131 PNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGEST 209 (458)
Q Consensus 131 ~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~ 209 (458)
+|+..|++.=-+....-...| ++ -.-.+..+.+.+. +++..|-.|+..|..+.. +. +.+
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~~---------e~---~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-- 145 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSNS---------EL---IRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-- 145 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCCH---------HH---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH--
T ss_pred CCHHHHHHHHHHHHHHccCCc---------HH---HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH--
Confidence 577788877666665432211 00 0123555666674 567788889999988753 33 222
Q ss_pred CChHHHhhcc--CCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC
Q 012677 210 DAIPLLLSPL--SPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD 287 (458)
Q Consensus 210 g~i~~Lv~lL--~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 287 (458)
..++.+..+| .+. ++.++..|+.++..+....+ .++..+++++.|..+|...++.++.+|+.+|..++..+
T Consensus 146 ~l~~~v~~~l~~~d~----~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 146 AFAGEIPKILVAGDT----MDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHTTHHHHHHHCSSS----CHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 4556677777 543 89999999999998886543 22232458999999999999999999999999998754
Q ss_pred cchhHhhccCchHHHHHHhh----cC-------------ChHHHHHHHHHHHHhccccc--chhHHHhhCcHHHHHHHhc
Q 012677 288 SNKLIIGKLGAMTPLIDLLE----EG-------------HPLAMKDVASAIFSLCILLE--NKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~----~~-------------~~~~~~~a~~aL~~L~~~~~--~~~~i~~~g~v~~Lv~ll~ 348 (458)
.. .. ...++.++..|. .+ ++-.+...+..|..++..++ .+..+.+ .++.++..+.
T Consensus 219 ~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 219 PE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred hH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 32 11 123444443332 21 45566777777776664322 1211211 2222222211
Q ss_pred c------------C-CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHH
Q 012677 349 E------------N-SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTRE 415 (458)
Q Consensus 349 ~------------~-~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 415 (458)
+ + .+.-.|+.++..+...++.... ++..|..+|.++ ++.++..|+..|..++...+.. .
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~--~ 364 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSH--E 364 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTH--H
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcH--H
Confidence 0 0 2344455555555444333222 244555555533 3566666666666666544311 1
Q ss_pred HHHhhhhhHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 012677 416 IMEEENANGTLSRLAE-NGTSRAKRKANGILERLN 449 (458)
Q Consensus 416 ~~~~~g~~~~L~~ll~-~~~~~~~~~A~~~L~~l~ 449 (458)
++. .....++..+. +.+..++.+|..+|..++
T Consensus 365 ~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 365 AVK--THIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 221 12334444444 455555555555555554
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-06 Score=71.39 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=84.8
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
...++.|+.+|.+. +..++..|+.+|..+.. . .++.|+.+|++++..+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~----~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE----NKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp ----------CCSS----CCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred cccHHHHHHHhcCC----CHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence 46678888888864 77788888777765431 1 36889999999999999999999987742
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHH
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAM 362 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~ 362 (458)
..+++.|+.+|+++++.++..|+++|.++. +..+++.|+.++.++ .++..|+.+|..
T Consensus 72 -------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346899999999999999999999999875 245788999999866 467777777654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00024 Score=66.49 Aligned_cols=182 Identities=8% Similarity=0.058 Sum_probs=133.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-hhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh-h
Q 012677 260 LLIDSVRTGTIETRRNAAAALFS-LSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH-A 337 (458)
Q Consensus 260 ~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~-~ 337 (458)
.++.-|.+++...+..+..-|.. ++.+.+....+++.+|+..|+.+...++...+..++.||.+|-.+...-..+++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 35566667777888888888887 565667788888888999999999999999999999999999998887766665 4
Q ss_pred CcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHh--------cC--CHHHHHHHHh--hcCChhHHhHHHHHH
Q 012677 338 GAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGE--------LG--AIPCLLRIIR--ESTCERNKENCAAIL 402 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~--------~g--~i~~Lv~ll~--~~~~~~~~~~a~~~L 402 (458)
..|..|..++.+. .+.+.|+.+|..++. ++.+...+.+ .| -...|+.+|+ ++.+..++.+|+..+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 7889999999865 577889999999987 4434333322 12 2779999997 234589999999888
Q ss_pred HHHhccCch-----hHHHHHHhhhhhHHHHHHhhhC--CHHHHHHH
Q 012677 403 YNICFTDRT-----RTREIMEEENANGTLSRLAENG--TSRAKRKA 441 (458)
Q Consensus 403 ~~L~~~~~~-----~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~A 441 (458)
-.+....++ .....+++.|.-..+...+.+. ++..+++-
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 777665442 2223345566666677766553 44555543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00018 Score=74.99 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=167.5
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
....++.++ .+.+.++-+.-.+..++..+++.... ++..+.+-|.++ ++.++..|+.+|.++...
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L------~iN~l~kDl~~~----n~~ir~lALr~L~~i~~~---- 141 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL------INNAIKNDLASR----NPTFMGLALHCIANVGSR---- 141 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH------HHHHHHHHHHSC----CHHHHHHHHHHHHHHCCH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH------HHHHHHHhcCCC----CHHHHHHHHHHhhccCCH----
Confidence 345666664 56777777777777777655433211 234555555554 889999999999998642
Q ss_pred hhhhcCCCCHHHHHHHH--hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcc
Q 012677 249 RLVAENPLAIPLLIDSV--RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~ 326 (458)
.+.+. +++.+.++| .+.++-+|..|+-++..+...++ ..+...+.++.|..+|.+.++.++..|+.+|..++.
T Consensus 142 -e~~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 142 -EMAEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -HHHHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 24442 677789999 78899999999999999987443 222235889999999998899999999999999987
Q ss_pred cccchhHHHhhCcHHHHHH----Hhcc---------------CCcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHH
Q 012677 327 LLENKRRAVHAGAVRVILR----KIME---------------NSLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 327 ~~~~~~~i~~~g~v~~Lv~----ll~~---------------~~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~l 385 (458)
..... + ...++.+++ ++.. +-.+...+.+|..++. +++.+..+.+ .+..++..
T Consensus 217 ~~~~~--~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~ 290 (621)
T 2vgl_A 217 KNPEE--F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNK 290 (621)
T ss_dssp HCHHH--H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHH
T ss_pred hChHH--H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHh
Confidence 54321 1 124444444 3321 1357778888888876 3566655543 23334433
Q ss_pred Hh---------hcC-ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 386 IR---------EST-CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 386 l~---------~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+. +.+ +..+.-.|+.++..+.. . . .++ ..++..|..++.+.++.++-.|...|..+....
T Consensus 291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~-~---~~~--~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-E-P---NLL--VRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-C-H---HHH--HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred hccCcccccccccchHHHHHHHHHHHHHhcCC-c-H---HHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 21 111 13677778888888752 1 1 222 245678888888788899999998888887543
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.93 E-value=7e-07 Score=73.39 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=86.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHH
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAV 335 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~ 335 (458)
..++.|+.+|++++..+|..|+.+|.++.. . .++.|+.+|+++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----------~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD----------E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS----------T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----------h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 366778888888888888888877765421 1 37999999999999999999999998753
Q ss_pred hhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 336 HAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 336 ~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
..+++.|+.+|.++ .++..++.+|..+.. ..+++.|+.++.+. +..++..|+.+|..
T Consensus 72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 34689999999876 578889999998852 23578899999854 58999999988864
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.7e-06 Score=62.68 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=38.8
Q ss_pred ccccccccccC-CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTD-PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~-p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|++|.-.+.. ...+||+|.||..|+..|.+++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58999876653 45679999999999999998778899999988754
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.6e-05 Score=68.79 Aligned_cols=185 Identities=9% Similarity=0.072 Sum_probs=128.1
Q ss_pred HHhh-cCCcHHHHHHHHHHHH-HHhhCchhhhhhhhccCChHHHhhcc-CCCCCCCChhHHHHHHHHHHhcccCch--hh
Q 012677 174 LEKM-SSSLSDQKEAAKELRL-LTKRMPLFRALFGESTDAIPLLLSPL-SPGRADTDPGLLEDLITTILNLSIHDE--NK 248 (458)
Q Consensus 174 v~~l-~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~a~~~L~~ls~~~~--~~ 248 (458)
-+.+ +++..+|.+|+..|.. +..+.+.......+....+..|...+ ++. +..++..|+.+|..++.+-. .-
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~----n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA----NIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHhcccccc
Confidence 3344 5678999999999999 87654432210111012355666666 443 78889999999999985322 11
Q ss_pred h-hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhh--ccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 249 R-LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIG--KLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 249 ~-~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
. ..... ++|.++..++.....++..+..+|..+...-+. .... -...++.|+..|++.++.++..++.+|..+.
T Consensus 98 ~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 98 SKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp CHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1 23332 788889999888899999999999988764311 1111 1236888889999999999999999999998
Q ss_pred ccccch-hH---HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 326 ILLENK-RR---AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 326 ~~~~~~-~~---i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
...... .. .+....+|.|.++|.+. .++..|..+|..++.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 654421 22 22357899999999887 588888888887754
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.7e-06 Score=79.10 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=38.2
Q ss_pred CccccccccccccC----Ccc----CCCcccccHHHHHHHHhcCC----------CCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMTD----PVV----LANGQTFDRPCIQRWLDEGN----------RTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~~----p~~----l~cgh~fc~~ci~~~~~~~~----------~~CP~c~~~l~~ 126 (458)
....|+||...+.+ |.. ..|||.||..|+.+||.... ..||.|+.+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34569999998876 422 36999999999999997421 379999998763
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0015 Score=55.27 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=147.8
Q ss_pred hhhhhhhhHHhhcCC-cHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 166 SRSHLNSLLEKMSSS-LSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+.+.+..++..|..| ..+|.+|+..|..+++..++....+ +..|+.+++.+ +..........+++.++.-
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl------~~kL~vm~~ks---EaIpltqeIa~a~G~la~i 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM------LKKLFSLLKKS---EAIPLTQEIAKAFGQMAKE 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH------HHHHHHHHHHC---CSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH------HHHHHHHHhhc---ccCchHHHHHHHHhHHHHh
Confidence 345788889988766 5789999999999998776655443 34566666553 3445544556677777754
Q ss_pred chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 245 DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 245 ~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
. ..++. +.+|.|..=+.-+++.++.+...+|..++...+. .+ .+++.-+..++.+++..-+..|+.. +
T Consensus 101 ~---Pe~v~--~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~--~~v~rdi~smltskd~~Dkl~aLnF---i 168 (253)
T 2db0_A 101 K---PELVK--SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LM--ASIVRDFMSMLSSKNREDKLTALNF---I 168 (253)
T ss_dssp C---HHHHH--HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HH--HHHHHHHHHHTSCSSHHHHHHHHHH---H
T ss_pred C---HHHHH--hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HH--HHHHHHHHHHhcCCChHHHHHHHHH---H
Confidence 3 34444 2788888778889999999999999999875432 11 3457778889988775555555544 4
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
+.-.+|...-+. -.+|.|..+|.++ -++..++.+|.+|+. ++..|..+.+ -++-+.+ .|+.++......
T Consensus 169 ~alGen~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D-~S~lv~~~V~eg 240 (253)
T 2db0_A 169 EAMGENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELND-TSSLVNKTVKEG 240 (253)
T ss_dssp HTCCTTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCC-SCHHHHHHHHHH
T ss_pred HHHhccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcC-cHHHHHHHHHHH
Confidence 444555555443 3788999999988 478889999999999 7877766532 2444443 457788777777
Q ss_pred HHHHhcc
Q 012677 402 LYNICFT 408 (458)
Q Consensus 402 L~~L~~~ 408 (458)
|..|..-
T Consensus 241 L~rl~l~ 247 (253)
T 2db0_A 241 ISRLLLL 247 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776643
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00022 Score=65.25 Aligned_cols=190 Identities=8% Similarity=0.089 Sum_probs=130.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-hhccC-cchhHhhc-cCchHHHHHHh-hcCChHHHHHHHHHHHHhccccc-chhH-H
Q 012677 261 LIDSVRTGTIETRRNAAAALFS-LSALD-SNKLIIGK-LGAMTPLIDLL-EEGHPLAMKDVASAIFSLCILLE-NKRR-A 334 (458)
Q Consensus 261 Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~-~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~-~~~~-i 334 (458)
+-..+.+.+..-|..|...|.. +.... +......+ ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5567788899999999999998 86431 11100122 34577888888 67789999999999999985332 2221 2
Q ss_pred HhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 335 VHAGAVRVILRKIMEN--SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 335 ~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.-.-++|.++..+.+. .+++.+..+|..++. ++.. ..-.=...++.|...|++. +..+++.++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 2234789999999886 466777777777755 2210 0000001366777888865 59999999999999987664
Q ss_pred hhHHHHHH-h-hhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 411 TRTREIME-E-ENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 411 ~~~~~~~~-~-~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
..-..+.. - ...++.|.+++.+.++.+|..|..+|..+++.-
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 21012211 1 367899999999999999999999999988654
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00043 Score=64.82 Aligned_cols=152 Identities=10% Similarity=0.038 Sum_probs=120.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHH-hcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhc-C
Q 012677 302 LIDLLEEGHPLAMKDVASAIFS-LCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGEL-G 377 (458)
Q Consensus 302 Lv~lL~~~~~~~~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~-g 377 (458)
++.-|.+++.+.+..++.-|.. +..+.+....++..+|+..|+....++ ..+..++.+|.+|..+.++-.-++++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3455556777788888888888 556777888899999999999999876 67888999999999999999888754 4
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhh---------hhHHHHHHhh---hCCHHHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEEN---------ANGTLSRLAE---NGTSRAKRKANGIL 445 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g---------~~~~L~~ll~---~~~~~~~~~A~~~L 445 (458)
.|..|..++.+ ....+...|+++|.+++..++....-+..+.. ....|+.+++ +++..++.+|..+|
T Consensus 203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 203 TIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 68888888885 55999999999999999988755433332222 2567888887 67889999999999
Q ss_pred HHHHhhHhh
Q 012677 446 ERLNKAALI 454 (458)
Q Consensus 446 ~~l~~~~~~ 454 (458)
..+-...+.
T Consensus 282 N~lL~~apd 290 (339)
T 3dad_A 282 NKTLAALPD 290 (339)
T ss_dssp HHHHHHCSS
T ss_pred HHHHhcCCC
Confidence 877766553
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00057 Score=67.20 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=150.6
Q ss_pred hhHHHHHHHHHHhcccCchhhhhhhcCCC-CHHHHHHHHhc---------------C--CHHHHHHHHHHHHHhhccCcc
Q 012677 228 PGLLEDLITTILNLSIHDENKRLVAENPL-AIPLLIDSVRT---------------G--TIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 228 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~-~i~~Lv~lL~~---------------~--~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
.+.+..++..|..|...++.|..+...+| .+|.++.+++. + ..+++-.++-++.-|+..++.
T Consensus 182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 45566788888888889999998887543 46767655441 1 256678888889999988877
Q ss_pred hhHhhccCch--HHHHHHhhcC-ChHHHHHHHHHHHHhccccc-c----hhH-HHhhCcHHHHHHHhccC-----CcHHH
Q 012677 290 KLIIGKLGAM--TPLIDLLEEG-HPLAMKDVASAIFSLCILLE-N----KRR-AVHAGAVRVILRKIMEN-----SLVDE 355 (458)
Q Consensus 290 ~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~-~----~~~-i~~~g~v~~Lv~ll~~~-----~~~~~ 355 (458)
.+.+...+.+ +.|+.+++.. ..++..-++.+|.||..... + ... ++..++ +++++.|... ++.+.
T Consensus 262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~ed 340 (480)
T 1ho8_A 262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQD 340 (480)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHH
Confidence 7777776643 6777778765 78899999999999987652 1 122 333445 5566666533 22221
Q ss_pred -------HHHHHHHhcCCHHH---------------HH-HHHhcC----------CHHHHHHHHhh---------cCChh
Q 012677 356 -------LLAILAMLSSHQDA---------------IE-EIGELG----------AIPCLLRIIRE---------STCER 393 (458)
Q Consensus 356 -------a~~~L~~La~~~~~---------------~~-~i~~~g----------~i~~Lv~ll~~---------~~~~~ 393 (458)
--.....+++.++. +. .+..++ .+..|+++|.. +.++.
T Consensus 341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~ 420 (480)
T 1ho8_A 341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI 420 (480)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence 22222233322222 22 332222 47889999974 23466
Q ss_pred HHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 394 NKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 394 ~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+..-|+.=|..++.+.|.. +.++++.|+-..+.+|+.+.++.++.+|..+++.+=.
T Consensus 421 ~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 421 IIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred eEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777888888889877643 5888889999999999999999999999999987654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0023 Score=68.44 Aligned_cols=198 Identities=15% Similarity=0.068 Sum_probs=134.1
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCcc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV-RTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
+++.|..+|... +....+.|+.+|+.+-.+..|. .++..|+..+ ...+..++..++..|.-+..
T Consensus 473 v~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~---- 537 (963)
T 4ady_A 473 VYEALKEVLYND----SATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINY---- 537 (963)
T ss_dssp HHHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC----
Confidence 466677777653 4455556666666542222221 1334455543 34577888888888876633
Q ss_pred hhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcC
Q 012677 290 KLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSS 365 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~ 365 (458)
++...++.++..|.. .++-+|..++.++.--.....|.. +|+.|+..+.+. .++..|+.+|..++.
T Consensus 538 ----g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 538 ----GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp ----TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred ----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 445578888888875 477777777777765544444443 456666666533 577778888887755
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGIL 445 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L 445 (458)
... ..++.++.+|.++.++.++..|..+|..++.+++.. .+++.|..++.+.++.+++.|..+|
T Consensus 608 g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 608 RDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp SSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHccCCCHHHHHHHHHHH
Confidence 321 357888887776667999999999999999877642 2566888888888889999999888
Q ss_pred HHHH
Q 012677 446 ERLN 449 (458)
Q Consensus 446 ~~l~ 449 (458)
..+.
T Consensus 672 G~Ig 675 (963)
T 4ady_A 672 SMIL 675 (963)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8775
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00099 Score=71.93 Aligned_cols=261 Identities=13% Similarity=0.121 Sum_probs=168.3
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
..+..+++.++ ++...+..|...+..+....... .... .+.+..|...+... . .. +.|+.++..++....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~k----~-~~-~~a~~~~~~~~~~~~ 84 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVP-EHFFGELAKGIKDK----K-TA-ANAMQAVAHIANQSN 84 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCC-HHHHHHHHHHHTSH----H-HH-HHHHHHHHHHTCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccc-hhHHHHHHHHHhcc----C-CH-HHHHHHHHHHHHhcC
Confidence 34566666665 34566777888888777643211 1222 35667777777652 1 22 888888888885543
Q ss_pred h---hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC-ChHHHHHHHHHHH
Q 012677 247 N---KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIF 322 (458)
Q Consensus 247 ~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~ 322 (458)
. ...+.- +.+|.++..+......++..|..++..+...- +...+ ..++|.|+..|.+. .-..+..|+.+|.
T Consensus 85 ~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~-~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 85 LSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAV-NPVAI--KALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp CCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-CGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC-CHHHH--HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 2 122222 26777788877778899999988888776432 11222 45789999988776 6899999999999
Q ss_pred HhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHH
Q 012677 323 SLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAA 400 (458)
Q Consensus 323 ~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~ 400 (458)
.|+..........=..+||.+-+.+.+- ++...|..++..+|..-+|+.. ...||.|++.+.++ +-...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~ 233 (986)
T 2iw3_A 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP---TEVPETVH 233 (986)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT---THHHHHHH
T ss_pred HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh---hhhHHHHH
Confidence 9987653222222247888888888776 6778788888888773333221 24589999999954 22444555
Q ss_pred HHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 401 ILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 401 ~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.|..-+.-.+-.... + +-.+|.|.+=+...+..++++++.++.|||+.
T Consensus 234 ~l~~~tfv~~v~~~~-l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 234 LLGATTFVAEVTPAT-L--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp HHTTCCCCSCCCHHH-H--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred HhhcCeeEeeecchh-H--HHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 555544433322111 1 22445555555556888999999999999985
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0011 Score=63.58 Aligned_cols=244 Identities=7% Similarity=0.008 Sum_probs=143.6
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
....++.+. .+.+.++-..-.+..++...+.. |. ++..|.+-++++ ++-++-.|+.+|.++...+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL----v~Nsl~kDl~~~----N~~iR~lALRtL~~I~~~~--- 135 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II----VTSSLTKDMTGK----EDSYRGPAVRALCQITDST--- 135 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG----GHHHHHHHHHSS----CHHHHHHHHHHHHHHCCTT---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH----HHHHHHhhcCCC----cHhHHHHHHHHHhcCCCHH---
Confidence 344566664 56777777777777777652221 11 245566666654 8899999999999987443
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
+++ .+.+.+.+.|.+.++.+|..|+-+...|.... .+.+ .+.++.+-.++.+.++.++.+|+.+|+.+...+
T Consensus 136 --m~~--~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 136 --MLQ--AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp --THH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --HHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 223 25666788888999999999999998886543 3333 258889999999999999999999999997654
Q ss_pred cchhHHHhhCcHHHHHHHhccCCc--HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHH
Q 012677 329 ENKRRAVHAGAVRVILRKIMENSL--VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNI 405 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L 405 (458)
. .++..|+..+..+.+ .-.-+.+|..+.. .++.- .-.....++.|..+|++. ++.+.-.|++++..|
T Consensus 208 ~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 208 R--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNK-HEMVVYEAASAIVNL 277 (355)
T ss_dssp H--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------CCCCCS-SHHHHHHHHHHHTC-
T ss_pred h--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhc
Confidence 1 144555665554322 2222333333333 11110 001123355566666654 588888999999887
Q ss_pred hccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 406 CFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
...+.. .+ ..++..|..++.+.++.+|--|...|..+...
T Consensus 278 ~~~~~~----~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 278 PGCSAK----EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ----------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred cCCCHH----HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 663321 12 23566777777777777777777666655543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.024 Score=61.27 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=173.1
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhCch--hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPL--FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
.+..+.+.+..--.. ..|+..+..++..... ..+.+.- +.++.+++...+. ...++..|-.++..+...-+
T Consensus 55 ~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk----~~~v~~aa~~~~~~~~~~~~ 127 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNK----DKEIQSVASETLISIVNAVN 127 (986)
T ss_dssp HHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCS----SHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCC----chHHHHHHHHHHHHHHHhCC
Confidence 444555555321111 6778888888854321 1122222 4567777766653 56777777666665543211
Q ss_pred hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
...+ . .++|.|+..|+++ ....+..|..+|..|+... ...+.. ...||.+-..+.+..++++..|..++..
T Consensus 128 -~~a~-~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~ 201 (986)
T 2iw3_A 128 -PVAI-K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTK 201 (986)
T ss_dssp -GGGH-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -HHHH-H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHH
Confidence 1111 2 2789999988766 6899999999999998754 344443 6678888888888899999999999999
Q ss_pred hcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCHHH-HHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHH
Q 012677 324 LCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDA-IEEIGELGAIPCLLRIIRESTCERNKENCAAIL 402 (458)
Q Consensus 324 L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 402 (458)
+|..-+|+.- ...+|.|++.+.+++-...++..|..-..-.+. ...+ +=.+|.|.+-|.. .+..++..++-++
T Consensus 202 ~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~-~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 202 ATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNE-RETGIKRKSAVII 275 (986)
T ss_dssp HGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhcc-CcchhheeeEEEE
Confidence 9987766542 357899999999886666666655544431111 1111 0025667777764 3588999999999
Q ss_pred HHHhcc--CchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHhhHh
Q 012677 403 YNICFT--DRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 403 ~~L~~~--~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.|||.- ++...+.++ ...+|.|-+.... ..|.+++.|..++..|.+...
T Consensus 276 ~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 999984 444444444 4556666665544 578999999999999877654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00071 Score=64.82 Aligned_cols=264 Identities=14% Similarity=0.081 Sum_probs=136.6
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhc
Q 012677 130 IPNHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGES 208 (458)
Q Consensus 130 ~~n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 208 (458)
.+|..+|+++=-|....... | + ..+ -+...+.+.+. +++-.|-.|+..|..+.. ++.- +
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~---~----e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~----~- 138 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-A---E----DVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STML----Q- 138 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-S---S----CGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH----H-
T ss_pred CCCHHHHHHHHHHHHHhCCC-H---H----HHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH----H-
Confidence 46888999887776654322 1 1 111 14556777774 567778888888888764 2221 1
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
...+.+-..|.+. ++.++..|+-+...|....+. +++ +++..+-+++.+.++-++.+|..+|..+...+.
T Consensus 139 -~l~~~lk~~L~d~----~pyVRk~A~l~~~kL~~~~pe---~v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 -AIERYMKQAIVDK----VPSVSSSALVSSLHLLKCSFD---VVK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp -HHHHHHHHHHTCS----SHHHHHHHHHHHHHHTTTCHH---HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHcCCC----CHHHHHHHHHHHHHHhccCHH---HHH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 3344555666654 899999999998888765543 333 388889999999999999999999999987541
Q ss_pred chhHhhccCchHHHHHHhhcC---ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHh
Q 012677 289 NKLIIGKLGAMTPLIDLLEEG---HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
.++..|+.-+..+ ++-.+..-++.+..+...++.. .....++.|...|++. .+.-.|+.++..+
T Consensus 209 --------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 209 --------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp --------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred --------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 1455666666553 4555555555555554433100 1233455555566654 5778888888887
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHH
Q 012677 364 SSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 364 a~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
...+.. .. ..++..|..++.++ ++.+|-.|+..|..+....++.. . .-..-+..++.+++..+...|..
T Consensus 278 ~~~~~~---~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v----~--~~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 278 PGCSAK---EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAV----T--ACNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp --------------CCCTHHHHHHSS-SSSSHHHHHHCC-----------------------------------------
T ss_pred cCCCHH---HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHH----H--HHHHHHHHHccCCcHhHHHHHHH
Confidence 552221 11 33466777778755 48999999999999998776432 1 12345667777888777777766
Q ss_pred HH
Q 012677 444 IL 445 (458)
Q Consensus 444 ~L 445 (458)
.|
T Consensus 347 tl 348 (355)
T 3tjz_B 347 TL 348 (355)
T ss_dssp --
T ss_pred Hh
Confidence 54
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.059 Score=53.02 Aligned_cols=233 Identities=16% Similarity=0.182 Sum_probs=140.7
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch---hhh-hhhcCCCCHHHHHHHHhcCCHHH-HHHHHHHHHHh
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE---NKR-LVAENPLAIPLLIDSVRTGTIET-RRNAAAALFSL 283 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~-~i~~~~~~i~~Lv~lL~~~~~~~-~~~a~~~L~~L 283 (458)
..++..++++|+.. .+.++....+..+..+...++ .+. .+.+.......+...+.+.+... ...+..++..+
T Consensus 76 ~~~~~~~l~lL~~~---~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll 152 (480)
T 1ho8_A 76 GKTLIPLIHLLSTS---DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLL 152 (480)
T ss_dssp STTHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhc---ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHH
Confidence 46678889988864 366777777777766655544 322 33343322222322222333343 44455444444
Q ss_pred hccCcchhHhhccCchHH------HHHHhhcC-ChHHHHHHHHHHHHhcccccchhHHHhhC--cHHHHHHHhc------
Q 012677 284 SALDSNKLIIGKLGAMTP------LIDLLEEG-HPLAMKDVASAIFSLCILLENKRRAVHAG--AVRVILRKIM------ 348 (458)
Q Consensus 284 s~~~~~~~~i~~~g~i~~------Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~i~~~g--~v~~Lv~ll~------ 348 (458)
+..... +...++. ++..|... +...+.-++.+|..|...++.|..+.+.+ .+++++.++.
T Consensus 153 ~~~~~~-----~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~ 227 (480)
T 1ho8_A 153 VQNGLH-----NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQ 227 (480)
T ss_dssp TSTTTC-----CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred hccCCc-----cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccc
Confidence 421111 1222333 33444442 34556678999999999999999988753 4777765443
Q ss_pred ---------cC----CcHHHHHHHHHHhcCCHHHHHHHHhcCCH--HHHHHHHhhcCChhHHhHHHHHHHHHhccCchh-
Q 012677 349 ---------EN----SLVDELLAILAMLSSHQDAIEEIGELGAI--PCLLRIIRESTCERNKENCAAILYNICFTDRTR- 412 (458)
Q Consensus 349 ---------~~----~~~~~a~~~L~~La~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~- 412 (458)
++ .++..++-+++-|+.+++..+.+...+.. +.|+.+++.+.-+++-+-++.+|.||....+..
T Consensus 228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~ 307 (480)
T 1ho8_A 228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH 307 (480)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred cccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence 11 24688999999999999988888887743 678888887666999999999999999876321
Q ss_pred ---HHHHHHhhhhhHHHHHHhhh--CCHHHHHHHHHHHHHHH
Q 012677 413 ---TREIMEEENANGTLSRLAEN--GTSRAKRKANGILERLN 449 (458)
Q Consensus 413 ---~~~~~~~~g~~~~L~~ll~~--~~~~~~~~A~~~L~~l~ 449 (458)
...++...++++.|..|... .++.+.+--..+...|.
T Consensus 308 ~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 349 (480)
T 1ho8_A 308 KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILE 349 (480)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHH
Confidence 12233223455555555444 35556554444444443
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.016 Score=51.94 Aligned_cols=205 Identities=14% Similarity=0.135 Sum_probs=137.0
Q ss_pred hhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhh-------ccCCCCC-CCChhHHHHHHHHHHh
Q 012677 169 HLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLS-------PLSPGRA-DTDPGLLEDLITTILN 240 (458)
Q Consensus 169 ~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~~-~~~~~~~~~a~~~L~~ 240 (458)
.+..+|..|. +++.|..|+..|..--...+..-..+=.+.|.+..|++ .++.+.- .....-..+|+..|..
T Consensus 4 ~i~qli~~L~-~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 4 KIYQWINELS-SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHHTS-STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 4555666664 45668888877766444444444445454677766633 2222100 0112345688888888
Q ss_pred cccCchhhhhhhcCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhhccCcc--hhHhhccCchHHHHHHhhcCChHH
Q 012677 241 LSIHDENKRLVAENPLAIPLLIDSVRTGT-----IETRRNAAAALFSLSALDSN--KLIIGKLGAMTPLIDLLEEGHPLA 313 (458)
Q Consensus 241 ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~ 313 (458)
++.|++.|..+..+. +.--|-.+|+..+ +-+|-.+.+++..|...++. -..+.+.+.||..++.++.|+.-.
T Consensus 83 vAshpetr~~Fl~a~-iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 83 VASHPETRSAFLAAH-IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHCTTTHHHHHHTT-GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHcCcchhhHHHHcc-chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 999999999999985 5555667777653 56899999999999987643 334556889999999999999999
Q ss_pred HHHHHHHHHHhcccccchhHHHh--------hCcHHHHHHHhc-cC--CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 314 MKDVASAIFSLCILLENKRRAVH--------AGAVRVILRKIM-EN--SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~--------~g~v~~Lv~ll~-~~--~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
+.-|.-.+..+-.++.+..-+.. ..++..+|.-+. ++ .+.+..+++-..|+.++..|+.+..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999998888777654333221 123444444333 23 3567788888888888888877743
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.74 E-value=0.055 Score=57.97 Aligned_cols=168 Identities=12% Similarity=0.037 Sum_probs=109.4
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCcc
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
++..|+..+.+. .+..+++.++..|+.+..+.+ ..++.+++.|.. .++-+|..++.++.--...
T Consensus 508 ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaG--- 572 (963)
T 4ady_A 508 AIHDMFTYSQET---QHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAG--- 572 (963)
T ss_dssp HHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---
Confidence 345555544332 255677777777766654433 366778887765 5677777776665432221
Q ss_pred hhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhcc-C--CcHHHHHHHHHHhcC
Q 012677 290 KLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIME-N--SLVDELLAILAMLSS 365 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~-~--~~~~~a~~~L~~La~ 365 (458)
.++..+|+.|+..+.+ .+..+|..|+.+|..+...++ ..++.++++|.+ + .++..+..+|..++.
T Consensus 573 ---TGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 573 ---TGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp ---SCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred ---CCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 1223467777776654 477899999999998866553 245666765643 3 578889999998865
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT 411 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~ 411 (458)
..... .++..|..++.+. +..++..|+-+|..+..+..+
T Consensus 642 Gn~~~------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 642 GKGLQ------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp SSCCH------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred CCCcH------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCcc
Confidence 32221 1356667777755 599999999999999887654
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0011 Score=59.80 Aligned_cols=49 Identities=16% Similarity=0.452 Sum_probs=39.4
Q ss_pred ccccccccccccCCccCC-CcccccHHHHHHHHhcC-CCCCCCCCccCCCC
Q 012677 79 EFRCPISGEIMTDPVVLA-NGQTFDRPCIQRWLDEG-NRTCPQTRQVLSHT 127 (458)
Q Consensus 79 ~~~C~ic~~~~~~p~~l~-cgh~fc~~ci~~~~~~~-~~~CP~c~~~l~~~ 127 (458)
-..|.||.++...-+.-+ |+|.||..|+..|++.. ...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 346999999888655443 99999999999999753 45899999987643
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.29 Score=41.58 Aligned_cols=215 Identities=12% Similarity=0.101 Sum_probs=137.6
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
..+..++.+|.+. -=.++.+|+..+.+++..-+. +.+. .+..|+.+++. .........+.++.-++...+
T Consensus 32 ~~l~~lI~~LDDD----lwtV~kNAl~vi~~i~~~~~e---l~ep--l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 32 SVLKKLIELLDDD----LWTVVKNAISIIMVIAKTRED---LYEP--MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCGG---GHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhccH----HHHHHHhHHHHHHHHHHHhHH---HHHH--HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 4566677777652 226899999999988865432 2221 34446666554 466666667777777765321
Q ss_pred chhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccCCc--HHHHHHHHHHhcCC
Q 012677 289 NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSL--VDELLAILAMLSSH 366 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~--~~~a~~~L~~La~~ 366 (458)
.++ .+.+|.|..-.+-|+++.+.+...+|..++...+.- -.+++.-+..++.+++- +-.++..+..|..
T Consensus 103 ---e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGe- 173 (253)
T 2db0_A 103 ---ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173 (253)
T ss_dssp ---HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-
T ss_pred ---HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-
Confidence 111 234666666666789999999999999987655422 23466778888887753 2234444444433
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 367 QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 367 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
+.-..+. -.+|.|..+|.+. ++-++..|+.+|.+|+..++. .+.++. .-++=+.+.|+.++.+....|.
T Consensus 174 --n~~~yv~-PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npk-lRkii~------~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 --NSFKYVN-PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDK-LRKVVI------KRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp --TTHHHHG-GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHH-HHHHHH------HHHHHCCCSCHHHHHHHHHHHH
T ss_pred --cCccccC-cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHH-HHHHHH------HHHHHhcCcHHHHHHHHHHHHH
Confidence 3223322 2479999999965 599999999999999998863 444432 2233345667788888888887
Q ss_pred HHHhhHh
Q 012677 447 RLNKAAL 453 (458)
Q Consensus 447 ~l~~~~~ 453 (458)
.+.-...
T Consensus 243 rl~l~e~ 249 (253)
T 2db0_A 243 RLLLLEG 249 (253)
T ss_dssp HHHHC--
T ss_pred HHHHHhc
Confidence 7764433
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.001 Score=51.54 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=28.6
Q ss_pred Cccccccccc-cccCCcc--CCCcccccHHHHHHHHh
Q 012677 78 YEFRCPISGE-IMTDPVV--LANGQTFDRPCIQRWLD 111 (458)
Q Consensus 78 ~~~~C~ic~~-~~~~p~~--l~cgh~fc~~ci~~~~~ 111 (458)
++..|+||.+ ++.+|+. +.|||+||+.|+..+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4578999996 4788988 89999999999998543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.083 Score=57.84 Aligned_cols=258 Identities=10% Similarity=0.051 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCC--CCCCChhHHHHHHHHHHhcccCchhhhhhhc----CC
Q 012677 182 SDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPG--RADTDPGLLEDLITTILNLSIHDENKRLVAE----NP 255 (458)
Q Consensus 182 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~~ 255 (458)
..|..|...|..++...+ ..+.. -.++.+...+... ....+-..++.|+.+++.++.+......-.. ..
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 345667777777776532 11211 1223333333310 0012456788999999988753211110000 00
Q ss_pred CCHHH----HHHHHhcC---CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 256 LAIPL----LIDSVRTG---TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 256 ~~i~~----Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
...+. ++..|.++ ++-+|..|+++|..++..- .... -..+++.++..|.+.++.++..|+.+|.+++...
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 13332 33345655 7899999999999998642 1111 2346788888888878999999999999998742
Q ss_pred c---------chhHHHh--hCcHHHHHHHhccC-------CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhh
Q 012677 329 E---------NKRRAVH--AGAVRVILRKIMEN-------SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRE 388 (458)
Q Consensus 329 ~---------~~~~i~~--~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~ 388 (458)
+ .+..+.. ...++.|+.++... ...+.++.+|..++.. ++... +.. ..++.|+..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHH
Confidence 2 1222322 35666677777653 1345566666665431 11111 111 134555555542
Q ss_pred ----cCChhHHhHHHHHHHHHhcc-CchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 389 ----STCERNKENCAAILYNICFT-DRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 389 ----~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.++......++.+|..++.. .++....+. ...++++..++..........+..++..+.+.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 33456666788888888775 333332332 45677788877765455566666666665543
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0099 Score=56.29 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=51.8
Q ss_pred CCccccccccccccCCccC-CCccc--ccHHHHHHHHhc-CCCCCCCCCccCCCCCCcccHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVL-ANGQT--FDRPCIQRWLDE-GNRTCPQTRQVLSHTVLIPNHLVREMIS 140 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l-~cgh~--fc~~ci~~~~~~-~~~~CP~c~~~l~~~~~~~n~~l~~~i~ 140 (458)
.-.+.||+....|..|+.- .|.|. |+...+...... +.-.||+|.+.+....+..+..+..++.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 3467899999999999975 69997 777777666543 3458999999999999999988877764
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.018 Score=57.44 Aligned_cols=243 Identities=10% Similarity=0.023 Sum_probs=150.2
Q ss_pred hhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchh--hhhhhhccCChHHHhhcc-----CCCCCC-CChhHHHHHHHHHHh
Q 012677 170 LNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLF--RALFGESTDAIPLLLSPL-----SPGRAD-TDPGLLEDLITTILN 240 (458)
Q Consensus 170 l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~~g~i~~Lv~lL-----~~~~~~-~~~~~~~~a~~~L~~ 240 (458)
...|+..| ++..+.|.-|+..|+.+.+..... +..... ....-.|+.+| .+..++ --..+++.++.+|+.
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 34444444 567899999999999888764321 111111 12233333333 111111 125889999999988
Q ss_pred cccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHH
Q 012677 241 LSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVAS 319 (458)
Q Consensus 241 ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~ 319 (458)
+ .+-+.. . .++..++..+..+.-+++..+.-.|.++ ...+.+ .++++.++..|.+.+.+++..|+.
T Consensus 255 L-~hLp~e-----~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----N-DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----H-HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 654433 2 2555566556777899999999999998 222222 667888888999999999999999
Q ss_pred HHHHhcccccchhHHHhhCcHHHHHHHhcc--C--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHH
Q 012677 320 AIFSLCILLENKRRAVHAGAVRVILRKIME--N--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNK 395 (458)
Q Consensus 320 aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~--~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 395 (458)
+|.-++ .++... .++..+-+.|.+ + ......+.+|..|+..+.. .......||.|--+++++- .+++
T Consensus 322 tLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtI-TSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPV-PEVR 392 (800)
T ss_dssp HHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSS-HHHH
T ss_pred Hhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCc-HHHH
Confidence 999998 221111 223333333432 2 3466677788888775521 1112356888888888764 9999
Q ss_pred hHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 396 ENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 396 ~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
..++.+|..+. . . .++. -...+++-..++.+++.+..+-+
T Consensus 393 ~AVL~TL~tfL--~-~---~~LR-----LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--E-E---SIDF-----LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--C-H---HHHH-----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--h-h---hHHH-----HHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999998877 1 1 1111 12344555667777777766653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.16 Score=46.72 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=112.2
Q ss_pred hHHhh-cCCcHHHHHHHHHHHHHHhhCchhh--h-hhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch--
Q 012677 173 LLEKM-SSSLSDQKEAAKELRLLTKRMPLFR--A-LFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-- 246 (458)
Q Consensus 173 Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~--~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-- 246 (458)
+-+.| +.+...|.+|+..|..+....+... . .+.......+.+-..+.+. +..++..++.+|..++..-.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds----N~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS----NVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS----SHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHhhhh
Confidence 44555 5678999999999987765433211 1 1111012234444566554 88999999998887764311
Q ss_pred ---hhhhhhcCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 247 ---NKRLVAENPLAIPLLID-SVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 247 ---~~~~i~~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+.......+.++|.|+. .|.++...++..+..++..+......... +++.++..+.+.++.++..++..|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111236777775 46777888999999888877654322222 3566667778889999999999998
Q ss_pred Hhcccccch---hHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 323 SLCILLENK---RRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 323 ~L~~~~~~~---~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
.+...-... ....-..+++.+..++.+. .++..|..++..|-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 875432111 1111123555667777766 688888888887755
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.2 Score=46.65 Aligned_cols=180 Identities=9% Similarity=0.049 Sum_probs=101.6
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHH-HHHh----cCCHHHHHHHHHHHHHhhcc
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLI-DSVR----TGTIETRRNAAAALFSLSAL 286 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv-~lL~----~~~~~~~~~a~~~L~~Ls~~ 286 (458)
+..|..+++. ..+.+--++-.++-+..++.....+....+. ..++ .++. .+++..+..+++++.|+-.+
T Consensus 105 l~~l~kil~W-----P~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~-~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~ 178 (304)
T 3ebb_A 105 LQILWKAINC-----PEDIVFPALDILRLSIKHPSVNENFCNEKEG-AQFSSHLINLLNPKGKPANQLLALRTFCNCFVG 178 (304)
T ss_dssp HHHHHHHHTS-----CTTTCHHHHHHHHHHTTSHHHHHHHHSTTTH-HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHcC-----CHHhHHHHHHHHHHHHcCccHHHHhhccccc-hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC
Confidence 4555555532 3455556666666666666555455443322 2233 2222 23566788999999999888
Q ss_pred CcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccc-hhHHHhhCcHHHHHHHhccC---CcHHHHHHHH
Q 012677 287 DSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN-KRRAVHAGAVRVILRKIMEN---SLVDELLAIL 360 (458)
Q Consensus 287 ~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L 360 (458)
...+..+.. ..+++.+...+.+.+..++..++.+++|++...-. +..-...-++..+..++... +...+++.+|
T Consensus 179 ~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 179 QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 887777664 33555555555556888999999999999874321 11001112444444555432 6778899999
Q ss_pred HHhcCCHHHHHHHHhcCCHHHHHH-HHhhcCChhHHhH
Q 012677 361 AMLSSHQDAIEEIGELGAIPCLLR-IIRESTCERNKEN 397 (458)
Q Consensus 361 ~~La~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~ 397 (458)
.+|...+.....+.+.=.+...++ +...+...++.+.
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 999874333333333322333333 3332233444443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.17 Score=46.03 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=107.6
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccC-ChHHHhhccCCCCCCCChhHHHHHHHHHHhccc---Cchhhhhhhc
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTD-AIPLLLSPLSPGRADTDPGLLEDLITTILNLSI---HDENKRLVAE 253 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~---~~~~~~~i~~ 253 (458)
+.|...+..|+..|......++.. .+.. .+ .+..+.--+.+ .+..+...++..|..+.. ....+-.-.+
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~--~~~~-lDll~kw~~lr~~d----~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRS--LLSN-SDLLLKWCTLRFFE----TNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHH--HHHT-HHHHHHHHHHHTTS----CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHH--HHHH-HHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 556777888888888766544322 2222 11 12222212223 377888888887776532 1111111111
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchh
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKR 332 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 332 (458)
.+-++|.|+.-+..+...+|+.+-.+|..+... .. ...++.++.-+.+.+..++..++..|..+-......
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 223789999988888889999988888777532 22 335677888888889999999999988885433211
Q ss_pred HHHhhCcH---HHHHHHhccC--CcHHHHHHHHHHh
Q 012677 333 RAVHAGAV---RVILRKIMEN--SLVDELLAILAML 363 (458)
Q Consensus 333 ~i~~~g~v---~~Lv~ll~~~--~~~~~a~~~L~~L 363 (458)
...++ +.+..++.+. .++..|+.++..+
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23477 9999999877 5788887777655
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=94.86 E-value=0.046 Score=51.61 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=52.6
Q ss_pred CCCccccccccccccCCccC-CCccc--ccHHHHHHHHhc-CCCCCCCCCccCCCCCCcccHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQT--FDRPCIQRWLDE-GNRTCPQTRQVLSHTVLIPNHLVREMIS 140 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~--fc~~ci~~~~~~-~~~~CP~c~~~l~~~~~~~n~~l~~~i~ 140 (458)
..-.+.||+....|..|+.- .|.|. |+...+.+.... +.-.||+|++.+....+..+..+..++.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 34467899999999999875 69997 887777766643 3458999999999999999988877775
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.51 Score=42.26 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC-------CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHH
Q 012677 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN-------SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLR 384 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~-------~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ 384 (458)
..+|+..|..++.+++-|..++++...-.|..+|... -++-.++++++.|.+ +++.-..+.+.+.||..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 3677788889999999999999999888888888643 357779999999987 6778888899999999999
Q ss_pred HHhhcCChhHHhHHHHHHHHHhccCchh------HHHHHHhhhhhH-HHHHHhhhCCHHHHHHHHHHHHHHHhhHhhh
Q 012677 385 IIRESTCERNKENCAAILYNICFTDRTR------TREIMEEENANG-TLSRLAENGTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 385 ll~~~~~~~~~~~a~~~L~~L~~~~~~~------~~~~~~~~g~~~-~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
.|..++ +-.|..|.-++..|-..+.+- ..++..-...+. .+..+....+++.-++..+.--.|+..+..+
T Consensus 153 ime~Gs-elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 153 IMESGS-ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHSC-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHhhcc-HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 999764 899999999998886654421 001111011222 2223445678888888888777777666553
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.92 Score=49.51 Aligned_cols=213 Identities=11% Similarity=0.072 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCC-CCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHH
Q 012677 184 QKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSP-GRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLI 262 (458)
Q Consensus 184 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv 262 (458)
+..+...+..+....+..-..... ..++..+..+.. +....+..+...++..+..++..+..+..+... ..++.++
T Consensus 263 k~~~~~~l~~l~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~-~~l~~li 339 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYEDVFGPMIN--EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNE-SAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCc-hHHHHHH
Confidence 455666676666544432111121 345555555532 111235678888888888877655443333211 1333333
Q ss_pred -----HHHhc---------C--------------CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhh------c
Q 012677 263 -----DSVRT---------G--------------TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLE------E 308 (458)
Q Consensus 263 -----~lL~~---------~--------------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------~ 308 (458)
..+.- . ....|..|..+|..|+..-. ..+.. -.++.+-..+. +
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~~~~~~ 416 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQYMSDPS 416 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHHHC---
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHhccCcc
Confidence 22210 0 12356677777877776432 22211 13344444454 3
Q ss_pred CChHHHHHHHHHHHHhcccccchhHHHhh-----CcHHHH----HHHhccC-----CcHHHHHHHHHHhcCC--HHHHHH
Q 012677 309 GHPLAMKDVASAIFSLCILLENKRRAVHA-----GAVRVI----LRKIMEN-----SLVDELLAILAMLSSH--QDAIEE 372 (458)
Q Consensus 309 ~~~~~~~~a~~aL~~L~~~~~~~~~i~~~-----g~v~~L----v~ll~~~-----~~~~~a~~~L~~La~~--~~~~~~ 372 (458)
.+...++.|+.++..++.....+...+.. ...+.+ +..|.++ -++..++++|..++.. ++.-
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l-- 494 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-- 494 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--
Confidence 46678899999999997543211100000 222222 2233433 3688899999999873 3221
Q ss_pred HHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 373 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
...++.++..|.++ +..++.+|+.+|.+++..
T Consensus 495 ---~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 495 ---IELMPILATFLQTD-EYVVYTYAAITIEKILTI 526 (960)
T ss_dssp ---HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhc
Confidence 22467888888754 489999999999999874
|
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.072 Score=38.77 Aligned_cols=48 Identities=29% Similarity=0.490 Sum_probs=38.2
Q ss_pred cccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.-.|-||.+-.- +|.+. .|+...|+.|++-=.+.++..||.|+.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 357999998642 34333 5999999999998888899999999998863
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=1.1 Score=41.05 Aligned_cols=185 Identities=11% Similarity=0.138 Sum_probs=116.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCc---chhHhh-c-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc---
Q 012677 258 IPLLIDSVRTGTIETRRNAAAALFSLSALDS---NKLIIG-K-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--- 329 (458)
Q Consensus 258 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--- 329 (458)
+| |-.-|.+.+-..|..|...|..+..... ...... . ...++.+-..+.+.+..++..++.+|..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 45 6677888999999999998887654321 111111 1 2345556677888899999999999998865321
Q ss_pred -chhH--HHhhCcHHHHHHH-hccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 330 -NKRR--AVHAGAVRVILRK-IMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 330 -~~~~--i~~~g~v~~Lv~l-l~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
.+.. ..-...++.|+.- +.+. .++..+..+|..++........ .++.++..+.+ .++.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~-Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK-KLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 1111 2234577777764 6655 4667777777666431111011 12344445553 46999999999998
Q ss_pred HHhccCc-h--hHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 404 NICFTDR-T--RTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 404 ~L~~~~~-~--~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.+..... . .....+ ...++.+..++.+.++.+|..|..++..+.++
T Consensus 165 ~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8765321 1 111222 23566788888889999999999999877654
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.02 Score=39.50 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=40.0
Q ss_pred CCCCCCCCccCCCCCCc-cc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhh
Q 012677 114 NRTCPQTRQVLSHTVLI-PN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDAS 166 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~-~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~ 166 (458)
++.||.|...+..+.+. ++ +. -+..|++|..+++. +|.+.+++....+.|++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCCChhhcEECc
Confidence 46799999999877655 33 22 48999999998764 99999998877776654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.38 Score=44.81 Aligned_cols=131 Identities=6% Similarity=0.016 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHhcccccchhHHHhh--CcHHHHHHHhccC--CcHHHHHHHHHHhcCCH------HHHHHHHhcCCH
Q 012677 310 HPLAMKDVASAIFSLCILLENKRRAVHA--GAVRVILRKIMEN--SLVDELLAILAMLSSHQ------DAIEEIGELGAI 379 (458)
Q Consensus 310 ~~~~~~~a~~aL~~L~~~~~~~~~i~~~--g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~------~~~~~i~~~g~i 379 (458)
.+..+.-+++++.|+..+...+..+... .+++.+...+.+. .++..++.++.|++..- +.+.. .+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll 235 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CL 235 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HH
Confidence 5667888999999999999888877653 3444444444333 57778888999998721 11111 34
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHH
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILE 446 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~ 446 (458)
..+..++....+.+....++.+|.+|...+. ....+....|+...+-++... ...++.+.|..+|.
T Consensus 236 ~~l~~il~~~~d~EalyR~LvALGtL~~~~~-~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 236 SLISTILEVVQDLEATFRLLVALGTLISDDS-NAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhCCh-hHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4555666655568889999999999998754 455666656666555555554 35667777776664
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=93.77 E-value=0.027 Score=48.00 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=50.3
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+.+.|. +. -+..|..|...++..||.+..++....+.||. .++.+|+.|.
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~--~Lk~~Ie~~~ 170 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL--AMKEVIDAFI 170 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH--HHHHHHHHHH
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH--HHHHHHHHHH
Confidence 3589999999988765553 33 48999999988777899999988877888875 7888888873
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=93.45 E-value=1.9 Score=46.93 Aligned_cols=175 Identities=10% Similarity=0.018 Sum_probs=105.9
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh---hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHH
Q 012677 266 RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL---EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV 342 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~ 342 (458)
.+.+...++.++.++..++..-... ....++.++..+ .++++.++..++++|...+..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 3456778999999999987643211 123344555544 23478899999999999886422212222 368888
Q ss_pred HHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh--cCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCc-hhHHHHHH
Q 012677 343 ILRKIMENSLVDELLAILAMLSSHQDAIEEIGE--LGAIPCLLRIIRES-TCERNKENCAAILYNICFTDR-TRTREIME 418 (458)
Q Consensus 343 Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~ 418 (458)
|+..|.++.++..|+.+|.+++. +.+..+.. ...+..|..++... -+...+...+.++..++...+ +.....+
T Consensus 534 l~~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~- 610 (963)
T 2x19_B 534 VLHALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL- 610 (963)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred HHHHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 88888777899999999999984 22222221 11233444555532 246788899999999886543 3333333
Q ss_pred hhhhhHHHHHHhh----h-CCHHHHHHHHHHHHHHH
Q 012677 419 EENANGTLSRLAE----N-GTSRAKRKANGILERLN 449 (458)
Q Consensus 419 ~~g~~~~L~~ll~----~-~~~~~~~~A~~~L~~l~ 449 (458)
...++++...+. . .++..+......+..|+
T Consensus 611 -~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 611 -HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp -HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 234455544332 2 25556665555555554
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.37 Score=43.08 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--c-hhHHHhh--------
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--N-KRRAVHA-------- 337 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~-~~~i~~~-------- 337 (458)
...+..++.+|..+..+..+...+.. .++|..|+..|.+.++.++..++..|..+|..++ + ...+.++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 45677888889988777766666655 7889999999988899999999999998887654 4 4443322
Q ss_pred --CcHHHHHHHhccC---CcHHHHHHHHHHhcCCH---HH----HHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 338 --GAVRVILRKIMEN---SLVDELLAILAMLSSHQ---DA----IEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 338 --g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~---~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
.-+..+++.+.+. +.+..++..+-.|..++ +. |.++...| +..+++-|+...++.+..
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKV 217 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHCCCHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCCHHHHH
Confidence 3566677777644 34555666666665532 33 44445555 666667776544455443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=2 Score=40.11 Aligned_cols=193 Identities=8% Similarity=0.050 Sum_probs=139.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhc--cCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccccc
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGK--LGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILLEN 330 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~ 330 (458)
+.+..|+..|..=+.+.|..++.+..++-....+ +...++ ..- +.++..|-.| ++++...+-..|.....++..
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 4888888888888999999999998888765422 222211 111 2233333232 566777777888888888887
Q ss_pred hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcC---CHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 331 KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELG---AIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 331 ~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
...+...+.+-.+.+.+..+ ++...|..++..|-. +...-..++..+ ....+-.+|.+ ++--++..+++.|..
T Consensus 157 a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLge 235 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHH
Confidence 77788888888999999877 788889999988755 777666776665 35666677775 469999999999999
Q ss_pred HhccCchh--HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 405 ICFTDRTR--TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 405 L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
|-....+. +.+.+.+..-+..+..|+.+.+..++-.|-.+.+.+-.
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 98765432 33344445566778888999999999998888776553
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.061 Score=40.68 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=46.1
Q ss_pred CCCCCCCCccCCCCCCcc--cHH-HHHHHHHHHHHh-----CCCCCCCCCC---CCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIP--NHL-VREMISQWCKEH-----GIELPKPIKD---TDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~--n~~-l~~~i~~~~~~~-----~~~~p~~~~~---~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||+|...+..+...+ .+. -+..|.+|...+ ..+||.+... +....+.||. .++.+|+.|.
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~--~L~~~I~~~~ 80 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE--ALRRAIENHN 80 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH--HHHHHHHHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH--HHHHHHHHHH
Confidence 468999999998876543 333 488999999875 3678886654 5566677764 7888888883
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=4.7 Score=37.66 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=118.3
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHh-----hCcHHHHHHHhccCCcHHHHHHHHHHhcC
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVH-----AGAVRVILRKIMENSLVDELLAILAMLSS 365 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~-----~g~v~~Lv~ll~~~~~~~~a~~~L~~La~ 365 (458)
.+...+.+..|+..|..-+-+.++.+.....++..... ++...++ ..++..|+.--..+++.-.+=..|+....
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 45556888899999988899999999999888877553 2222222 24444444444455788888889999999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHHHHHhhhCCHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
++...+.++..+.+..+.++++.+ +-++..-|..++..|-.....-+...+... -+....-.|+.+++.-+++++..
T Consensus 153 ~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 999999999988899999999965 499999999999988776654444444421 34555677889999999999999
Q ss_pred HHHHHH
Q 012677 444 ILERLN 449 (458)
Q Consensus 444 ~L~~l~ 449 (458)
+|..|-
T Consensus 232 LLgelL 237 (341)
T 1upk_A 232 LLGELL 237 (341)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.03 E-value=5.2 Score=43.46 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh---h--cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHH
Q 012677 268 GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL---E--EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRV 342 (458)
Q Consensus 268 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~ 342 (458)
.+...++.++.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 456688999999998875432111 13344444433 2 2478899999999999886432211111 245666
Q ss_pred HHHHhccCCcHHHHHHHHHHhcCCHHHHHHHHh--cCCHHHHHHHHhhc-CChhHHhHHHHHHHHHhccCc-hhHHHHHH
Q 012677 343 ILRKIMENSLVDELLAILAMLSSHQDAIEEIGE--LGAIPCLLRIIRES-TCERNKENCAAILYNICFTDR-TRTREIME 418 (458)
Q Consensus 343 Lv~ll~~~~~~~~a~~~L~~La~~~~~~~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~ 418 (458)
|+..| ++.++..|+.+|.+++. +.+..+.. ...+..|..++... -+...+...+.++..++...+ ......+
T Consensus 551 l~~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~- 626 (971)
T 2x1g_F 551 LVRGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL- 626 (971)
T ss_dssp HHHHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-
T ss_pred HHHHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-
Confidence 77666 37899999999999994 33344422 23455556666642 247888999999999876432 2222222
Q ss_pred hhhhhHHHHHHh----hhC--CHHHHHHHHHHHHHHHhh
Q 012677 419 EENANGTLSRLA----ENG--TSRAKRKANGILERLNKA 451 (458)
Q Consensus 419 ~~g~~~~L~~ll----~~~--~~~~~~~A~~~L~~l~~~ 451 (458)
...++++...+ ... ++..+......|..|+..
T Consensus 627 -~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 627 -DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp -HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 22344444432 222 344556666666666544
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=91.91 E-value=1.6 Score=42.83 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=93.9
Q ss_pred hhhhhhhhHHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 166 SRSHLNSLLEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 166 ~~~~l~~Lv~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+....+.++..-+++..+++-|...|..+-+.-|.... .++..++++..+. |..++..|+..|-.+|++
T Consensus 27 ~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDe----d~~IR~qaik~Lp~~ck~- 95 (507)
T 3u0r_A 27 HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDE----DVSIRRQAIKELPQFATG- 95 (507)
T ss_dssp GHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCS----SHHHHHHHHHHGGGGCCT-
T ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcc----cHHHHHHHHHhhHHHhhh-
Confidence 44566777777778899999999999999998887753 5677899999874 899999999999999988
Q ss_pred hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 246 ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 246 ~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
++... +...|+++|...+..-....-.+|..|-..|.. |.+..|..-+..+++.+|+.++.-|.
T Consensus 96 ~~i~k------iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 96 ENLPR------VADILTQLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TCHHH------HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hhhhh------HHHHHHHHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 44333 455689999988877777676777666544321 22233333333345555655555543
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=91.80 E-value=0.98 Score=43.55 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=96.6
Q ss_pred hhhhhhcCCCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHH
Q 012677 247 NKRLVAENPLAIPLLIDSVRT-----------GTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAM 314 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 314 (458)
....|+ .+ |+..|+.+|.. .+...+..++.+|..|..+..+...+.. ..+|..|+..|.+..+.++
T Consensus 102 WV~~F~-~~-Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 102 WVQTFG-AE-GLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHH-HH-HHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHH-Hc-cHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 345555 43 67778888752 1346778888999998777666665555 8899999999999999999
Q ss_pred HHHHHHHHHhccccc--c-hhHHHh----------hCcHHHHHHHhccC---CcHHHHHHHHHHhcCC---HHH----HH
Q 012677 315 KDVASAIFSLCILLE--N-KRRAVH----------AGAVRVILRKIMEN---SLVDELLAILAMLSSH---QDA----IE 371 (458)
Q Consensus 315 ~~a~~aL~~L~~~~~--~-~~~i~~----------~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~---~~~----~~ 371 (458)
..++..|..+|..++ + ...+++ ..-+..++..|.++ +....++..+-.+... -+. |.
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 259 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 259 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999887654 3 444333 24577888888764 3455566666666553 233 44
Q ss_pred HHHhcCCHHHHHHHHhhcCChhH
Q 012677 372 EIGELGAIPCLLRIIRESTCERN 394 (458)
Q Consensus 372 ~i~~~g~i~~Lv~ll~~~~~~~~ 394 (458)
++...| +..++.-|+...++.+
T Consensus 260 ef~~~G-l~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 260 ELMRLG-LHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHTT-HHHHHHHHTTSCCHHH
T ss_pred HHHHCC-hHHHHHHHhcCCChhH
Confidence 445566 5555555765443443
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.098 Score=38.68 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+...+. +. -+..|..|... ..++|.+.+.+....+.||. .++.+|+.|.
T Consensus 14 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~--~L~~~i~~~~ 77 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVP--ELKEQIQAWM 77 (85)
T ss_dssp TTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECH--HHHHHHHHHH
T ss_pred heECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHH--HHHHHHHHHH
Confidence 5689999999988755443 32 48899999986 56899998888877777774 7888888873
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.91 E-value=1.1 Score=49.01 Aligned_cols=215 Identities=14% Similarity=0.068 Sum_probs=117.1
Q ss_pred CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCC-CCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 180 SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGR-ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 180 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
+...+..|+..+..++..-.... ...++.++.++..-. .+.++.++..++++|+.++..-........ .++
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHH
Confidence 34566677777777665432211 122333333321110 013678999999999988743211112222 256
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcC--ChHHHHHHHHHHHHhcccc--cchh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEG--HPLAMKDVASAIFSLCILL--ENKR 332 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~--~~~~ 332 (458)
+.|+..|. +.++..|+.++.+|+.. .+..+.. .+.+..|..++..+ +...+..+..++..++..- +...
T Consensus 549 ~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66777773 57899999999999853 2333432 45666677777764 5678888888888887532 2222
Q ss_pred HHHhhCcHHHHHHHhc----cC----CcHHHHHHHHHHhcC---CH-----HHH------HHH--HhcCCHHHHHHHHhh
Q 012677 333 RAVHAGAVRVILRKIM----EN----SLVDELLAILAMLSS---HQ-----DAI------EEI--GELGAIPCLLRIIRE 388 (458)
Q Consensus 333 ~i~~~g~v~~Lv~ll~----~~----~~~~~a~~~L~~La~---~~-----~~~------~~i--~~~g~i~~Lv~ll~~ 388 (458)
..+ ...++++++.+. .. +........|..|+. .- +.. ..+ .-...++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 222 234455554443 21 122333444433332 10 000 001 223467777777764
Q ss_pred c-CChhHHhHHHHHHHHHhcc
Q 012677 389 S-TCERNKENCAAILYNICFT 408 (458)
Q Consensus 389 ~-~~~~~~~~a~~~L~~L~~~ 408 (458)
. .+..+.+.+++++..++..
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 3 3578999999999997753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.51 Score=47.23 Aligned_cols=206 Identities=9% Similarity=-0.003 Sum_probs=128.6
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch---hhhhhhcCC-CCHHHHHHHHh---cC-------CHHHHHHHH
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE---NKRLVAENP-LAIPLLIDSVR---TG-------TIETRRNAA 277 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~---~~~~i~~~~-~~i~~Lv~lL~---~~-------~~~~~~~a~ 277 (458)
.+.|+.-|-+. .=+++..|+.+|+.+.+... .+. .... ...-.|+-+|. .+ -..+|+.++
T Consensus 176 cE~L~~DLFdp----~WEiRHGAALGLREILR~hG~GAGR~--~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 176 FEQISDNLLSY----EWYKRHGAFLAFAAMFSEIDNGGDIQ--IRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp THHHHHHTTCS----SHHHHHHHHHHHHHHHHHCC----CC--CCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred HHHHHHHhcCc----chhhhhHHHHHHHHHHHHhccCCcee--ccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 44455444443 34888888888887654322 111 1111 12233333331 11 268999999
Q ss_pred HHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHH
Q 012677 278 AALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDE 355 (458)
Q Consensus 278 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~ 355 (458)
.+|..+ .+-+.. ..++..|+..+..+.-+++..++-.|.++ .+-... =.++++.++..|.+. +++..
T Consensus 250 QtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAV 318 (800)
T 3oc3_A 250 YLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLL 318 (800)
T ss_dssp HHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHH
Confidence 999998 543332 34566666656677889999999999999 221111 246788888888876 78999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCHHHHHHHH----hhcCC-hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHh
Q 012677 356 LLAILAMLSSHQDAIEEIGELGAIPCLLRII----RESTC-ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLA 430 (458)
Q Consensus 356 a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll----~~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll 430 (458)
|+.+|.-++ ....++.|+..+ .+.++ .......+..|+.|+..+.... .....+|.|...+
T Consensus 319 AAetLiPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~----~dp~LVPRL~PFL 384 (800)
T 3oc3_A 319 SAELLCHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS----IPPERLKDIFPCF 384 (800)
T ss_dssp HHHHHTTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC----CCSGGGGGTGGGG
T ss_pred HHHHhhhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc----cChHHHHHHHhhh
Confidence 999999988 223455555444 33221 2223455678888888774211 1246788888888
Q ss_pred hhCCHHHHHHHHHHHHHH
Q 012677 431 ENGTSRAKRKANGILERL 448 (458)
Q Consensus 431 ~~~~~~~~~~A~~~L~~l 448 (458)
.+.-..+|..+..+|..+
T Consensus 385 RHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 385 TSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp TCSSHHHHHHHHHHTTTC
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 888888998888777554
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=90.53 E-value=0.086 Score=40.19 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCCCCCCccCCCCCCccc--HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN--HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n--~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
.+.||.|...+..+...+. +. -+..|..|... ..+||.+.+++....+.||. .++.+|+.|
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~--~Lk~~I~~~ 85 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNT--ELKEKIQRW 85 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECH--HHHHHHHHH
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcH--HHHHHHHHH
Confidence 5689999999988765553 33 48899999876 45799998888877777774 788888887
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=90.35 E-value=0.092 Score=40.17 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=48.1
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+...+. +. -+..|..|... ..+||.+.+++....+.||. .++.+|+.|.
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~--~Lk~~I~~~~ 92 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVP--ELKEQIQAWM 92 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECH--HHHHHHHHHH
T ss_pred hhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECH--HHHHHHHHHH
Confidence 5689999999988765543 22 48899999874 56899998888877787775 7888888883
|
| >2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=90.13 E-value=0.37 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=29.5
Q ss_pred CCccccccccccccCCccCCC----cccccHHHHHHHHhc
Q 012677 77 PYEFRCPISGEIMTDPVVLAN----GQTFDRPCIQRWLDE 112 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~c----gh~fc~~ci~~~~~~ 112 (458)
...+.|.+|.+-++|--.+.| +|.||-.|-+.+++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456789999999999765543 799999999988874
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.21 E-value=2.2 Score=37.90 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=87.9
Q ss_pred hhhhhhhhccCChHHHhhccCCC----CC---CCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHH
Q 012677 200 LFRALFGESTDAIPLLLSPLSPG----RA---DTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIET 272 (458)
Q Consensus 200 ~~~~~i~~~~g~i~~Lv~lL~~~----~~---~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~ 272 (458)
..-..+ . .+|+..|+..|... .. ..+...+...+.+|..+..+......+......+..|+..|.+++..+
T Consensus 35 ~Wv~~F-~-~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 35 SWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHH-H-HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred HHHHHH-H-HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 344445 4 47777777777431 11 124566778888998888888778888887778999999999999999
Q ss_pred HHHHHHHHHHhhccCc--c-hhHh----------hccCchHHHHHHhhc-CChHHHHHHHHHHHHhccccc
Q 012677 273 RRNAAAALFSLSALDS--N-KLII----------GKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 273 ~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~ 329 (458)
+..+..+|..++...+ + ...+ .+..-+..++..|++ .+.+.+..++..+-.+....+
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~ 183 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 183 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCC
Confidence 9999999998887654 3 3332 223456678887764 355666666666655555443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.20 E-value=1.8 Score=39.30 Aligned_cols=133 Identities=8% Similarity=0.057 Sum_probs=86.7
Q ss_pred cCCcHHHHHHHHHHHHHH----hhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhc
Q 012677 178 SSSLSDQKEAAKELRLLT----KRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAE 253 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~----~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~ 253 (458)
+++..+...++..|..+. ...+.....-+ .-.+|.|+.-+..+ ...+++.+-.+|..+..- ..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea--~~~lP~LveKlGd~----k~~vR~~~r~il~~l~~v-------~~ 164 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV--SAFVPYLLLKTGEA----KDNMRTSVRDIVNVLSDV-------VG 164 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHGGGCS----SHHHHHHHHHHHHHHHHH-------HC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH--HHHHHHHHHHhCCC----hHHHHHHHHHHHHHHHHH-------CC
Confidence 355666666666665543 22222222111 24678888888654 567777777776655421 11
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCch---HHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 254 NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAM---TPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 254 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
...+.+.++.-+++.|..+|+.++..+..+-... +.. ...++ +.+..++.+.+..+|..|+.++..+-..
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA-GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1125566777778889999999999888875432 111 24478 9999999999999999999998876543
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=89.20 E-value=1.9 Score=41.63 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc--c-hhHHHh---------
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE--N-KRRAVH--------- 336 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~-~~~i~~--------- 336 (458)
......++.+|..|..+..+...+.. .++|..|+..|.+.++.++..++..|..+|..++ + ...+++
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 46677788889888777666666555 7889999999988899999999999988887654 3 333322
Q ss_pred -hCcHHHHHHHhccC---CcHHHHHHHHHHhcCCH---HH----HHHHHhcCCHHHHHHHHhhcCChhHHh
Q 012677 337 -AGAVRVILRKIMEN---SLVDELLAILAMLSSHQ---DA----IEEIGELGAIPCLLRIIRESTCERNKE 396 (458)
Q Consensus 337 -~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~---~~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 396 (458)
..-+..||+.+.+. +....++..+-.|...+ +. |.++...| +..++.-|+...++.+..
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDMKV 221 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChhHHH
Confidence 24566788888754 35556666666665532 23 44555556 666666666544454443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=89.09 E-value=28 Score=37.58 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=121.9
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHH---hcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSV---RTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPL 302 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~L 302 (458)
+-..++.++.+++.++..-... .. ..++.++..+ ..+++.++..++++|..++..- ++...+ ..+++.|
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l 534 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLV 534 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCch----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHH
Confidence 5678888999999888653321 11 2555566554 2346789999999999887532 122222 4678888
Q ss_pred HHHhhcCChHHHHHHHHHHHHhcccccchhHHHh--hCcHHHHHHHhccC----CcHHHHHHHHHHhcC-C-HHHHHHHH
Q 012677 303 IDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH--AGAVRVILRKIMEN----SLVDELLAILAMLSS-H-QDAIEEIG 374 (458)
Q Consensus 303 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~-~~~~~~i~ 374 (458)
+..|.+ +.++..|+.+|.+++..-. ..+.. ...+..|..++..+ ..+..++.++..++. . ++.....+
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 888854 8899999999999985322 22221 24555556666643 355667777787765 2 34444443
Q ss_pred hcCCHHHHHHHHh----hcCChhHHh---HHHHHHHHHhccCc----------------------hhHHHHHHhhhhhHH
Q 012677 375 ELGAIPCLLRIIR----ESTCERNKE---NCAAILYNICFTDR----------------------TRTREIMEEENANGT 425 (458)
Q Consensus 375 ~~g~i~~Lv~ll~----~~~~~~~~~---~a~~~L~~L~~~~~----------------------~~~~~~~~~~g~~~~ 425 (458)
+. .++.+...+. ...+++.+. ..+.+|..+...-. .....+. ....+.
T Consensus 611 ~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 687 (963)
T 2x19_B 611 HS-LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVFQL 687 (963)
T ss_dssp HH-HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHHHH
T ss_pred HH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHHHH
Confidence 22 3455554443 222344444 33444444433211 0011121 335556
Q ss_pred HHHHhhh--CCHHHHHHHHHHHHHHHh
Q 012677 426 LSRLAEN--GTSRAKRKANGILERLNK 450 (458)
Q Consensus 426 L~~ll~~--~~~~~~~~A~~~L~~l~~ 450 (458)
+..++.. .+..+.+.++.+++.+..
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 6666543 467888888888887654
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=87.98 E-value=5.1 Score=38.48 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhCc-hhhhhhhhccCChHHHhhccCC----CC---CCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCH
Q 012677 187 AAKELRLLTKRMP-LFRALFGESTDAIPLLLSPLSP----GR---ADTDPGLLEDLITTILNLSIHDENKRLVAENPLAI 258 (458)
Q Consensus 187 a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~----~~---~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i 258 (458)
.+..|+...+.++ ..-..+. .+|+..|+++|.. +. ...+...+...+.+|..+..+......+......+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence 4555553333333 3444454 4678888888742 11 02355777888899999888888888888888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCc--c-hhHh----------hccCchHHHHHHhhcC-ChHHHHHHHHHHHHh
Q 012677 259 PLLIDSVRTGTIETRRNAAAALFSLSALDS--N-KLII----------GKLGAMTPLIDLLEEG-HPLAMKDVASAIFSL 324 (458)
Q Consensus 259 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L 324 (458)
..|+..|.+.++.++..+..+|..++...+ + ...+ ++..-+..++..|.++ +.+.+..++..+-.+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654 2 3222 2345678889988874 667777666666666
Q ss_pred ccccc---chhH----HHhhCcHHHHHHHhcc
Q 012677 325 CILLE---NKRR----AVHAGAVRVILRKIME 349 (458)
Q Consensus 325 ~~~~~---~~~~----i~~~g~v~~Lv~ll~~ 349 (458)
....+ .|.. +...|..+.+-. |+.
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 55443 2222 444566555554 554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=87.60 E-value=0.22 Score=45.76 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=49.5
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS 178 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~ 178 (458)
.+.||.|...+..+.+.|. ++ .+..|..|...++..||.+..++....+.||. .++.+|+.|.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~--~l~~~i~~~~ 272 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL--AMKEVIDAFI 272 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH--HHHHHHHHHH
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH--HHHHHHHHHH
Confidence 4589999999988765543 22 48889999988777799999888877777774 7888888884
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=86.97 E-value=0.31 Score=43.85 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=32.8
Q ss_pred CchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHH
Q 012677 198 MPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAA 277 (458)
Q Consensus 198 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~ 277 (458)
++..|..... .=....|..++.+. +..++..++..| . .+.|..+++.++..+|..++
T Consensus 63 ~~~VR~~AA~-~l~~~~l~~L~~D~----~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~aA 119 (244)
T 1lrv_A 63 FWERRAIAVR-YSPVEALTPLIRDS----DEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVA 119 (244)
T ss_dssp SHHHHHHHHT-TSCGGGGGGGTTCS----SHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHH
T ss_pred CHHHHHHHHH-hCCHHHHHHHccCc----CHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHHHH
Confidence 3445555554 22344455555553 777777776532 1 13355666677777777766
Q ss_pred HH
Q 012677 278 AA 279 (458)
Q Consensus 278 ~~ 279 (458)
..
T Consensus 120 ~~ 121 (244)
T 1lrv_A 120 DR 121 (244)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=86.10 E-value=3.6 Score=45.24 Aligned_cols=216 Identities=12% Similarity=0.047 Sum_probs=125.3
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC---
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH--- 244 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~--- 244 (458)
.+..+++.+ +++...|.+|-..|..+-.. .++...+..+|..+ .+..++--|+..|.+....
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----------p~~~~~l~~iL~~s---~~~~vr~~aa~~Lk~~i~~~W~ 82 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----------PDAWQKADQILQFS---TNPQSKFIALSILDKLITRKWK 82 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----------TTGGGGHHHHHHHC---SCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----------chHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHhhCc
Confidence 455555554 45666777888888766543 34555555666442 3778888999999886532
Q ss_pred ---chhhhhhhcCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHH
Q 012677 245 ---DENKRLVAENPLAIPLLIDSVRTG-----TIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMK 315 (458)
Q Consensus 245 ---~~~~~~i~~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~ 315 (458)
++.+..+... ++..+...-..+ +..++...+.++..++..+-. .. .+.++.|+.+++ .++..+.
T Consensus 83 ~l~~~~~~~ir~~--ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~ 155 (1049)
T 3m1i_C 83 LLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCE 155 (1049)
T ss_dssp GSCHHHHHHHHHH--HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHH
T ss_pred cCCHHHHHHHHHH--HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHH
Confidence 2233333221 333333221111 356788888888888765311 12 568899999886 5556677
Q ss_pred HHHHHHHHhccccc---------ch-----hHHHhh--CcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhc
Q 012677 316 DVASAIFSLCILLE---------NK-----RRAVHA--GAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGEL 376 (458)
Q Consensus 316 ~a~~aL~~L~~~~~---------~~-----~~i~~~--g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~ 376 (458)
.++.+|..|+..-. .+ ..+.+. .++..+.+++.+. .++..++.++......-+ -..+.+.
T Consensus 156 ~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~ 234 (1049)
T 3m1i_C 156 NNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYET 234 (1049)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSS
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhh
Confidence 78888887763211 11 112221 2334444455433 467778888877655222 1224445
Q ss_pred CCHHHHHHHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 377 GAIPCLLRIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 377 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
..++.+.+.+.. ++.++..|+.+|..+...
T Consensus 235 ~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 235 NILELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp SHHHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 556666633332 378889999999888865
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=85.94 E-value=0.34 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=44.7
Q ss_pred CCCCCCCCccCCCCCCccc-HH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN-HL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
...||.|...+..+...+- +. .+.-|.+|...+...||..........+.+|. .++.+|+.|
T Consensus 8 ~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~--~l~~~i~~~ 71 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY--VLKSLIALW 71 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT--TTHHHHHHH
T ss_pred cCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH--HHHHHHHHH
Confidence 4589999999877644442 22 37889999986677899887777666666653 677787776
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=85.81 E-value=16 Score=40.09 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhc-----CChHHHHHHHHHHHHhcccccchhHHHhhCcHH
Q 012677 268 GTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEE-----GHPLAMKDVASAIFSLCILLENKRRAVHAGAVR 341 (458)
Q Consensus 268 ~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 341 (458)
.+-..++.++++++.++..... ...-.-..+++.|+.++.. ....++..++++|...+..-....... ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 4688999999999999865432 2222224578889998864 233455567788887765432222221 13455
Q ss_pred HHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHh------cCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCc
Q 012677 342 VILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGE------LGAIPCLLRIIRE---STCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 342 ~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~------~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.|++.|.++ .++..|+.+|.+||. +.+..+.. ..-++.++..+.. .-+.........++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 555555443 589999999999986 34444442 1124444443321 1236667788888888887665
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=85.48 E-value=15 Score=40.00 Aligned_cols=210 Identities=8% Similarity=-0.018 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhcccCchh-hhhhhcC----CCCHHHHHHHHh-----cCCHHHHHHHHHHHHHhhccCcchhHhhccCc
Q 012677 229 GLLEDLITTILNLSIHDEN-KRLVAEN----PLAIPLLIDSVR-----TGTIETRRNAAAALFSLSALDSNKLIIGKLGA 298 (458)
Q Consensus 229 ~~~~~a~~~L~~ls~~~~~-~~~i~~~----~~~i~~Lv~lL~-----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~ 298 (458)
...|.++.+|..++..-.+ ...+... ...++.++.+++ .+.+.++..++.++...+..=.. ....
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~~~~ 532 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----ESAA 532 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----CCTT
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----Cchh
Confidence 5577788888777754322 1111011 123444455555 45789999999999887653221 2456
Q ss_pred hHHHHHHhhc------CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--------C-------------
Q 012677 299 MTPLIDLLEE------GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--------S------------- 351 (458)
Q Consensus 299 i~~Lv~lL~~------~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--------~------------- 351 (458)
+++++..+-+ +++.++..|+.++.+++..-... + .+.++.+++.+.+- .
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~--L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ--V--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT--C--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH--h--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 6776665544 46789999999999998754432 2 13444444443211 0
Q ss_pred ------c---HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHh----hcCC---hh-HHhHHHHHHHHHhccCchh-
Q 012677 352 ------L---VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIR----ESTC---ER-NKENCAAILYNICFTDRTR- 412 (458)
Q Consensus 352 ------~---~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~----~~~~---~~-~~~~a~~~L~~L~~~~~~~- 412 (458)
- .-.|++.|..... .++.+...++. .+++|+.-+. ...+ +. ...+.+.+|..++++.+..
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~-ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~ 687 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS-LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG 687 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCccc
Confidence 0 2234444444443 34555444433 3455544333 2111 11 1225677788888765321
Q ss_pred -----HHHHHHhhhhhHHHHHHhh--hCCHHHHHHHHHHHHHHHh
Q 012677 413 -----TREIMEEENANGTLSRLAE--NGTSRAKRKANGILERLNK 450 (458)
Q Consensus 413 -----~~~~~~~~g~~~~L~~ll~--~~~~~~~~~A~~~L~~l~~ 450 (458)
...+. ....+.+...+. ..+..+++.+..+++.+-.
T Consensus 688 ~~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 688 SEEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp -CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 11222 134555555555 3577899999998887653
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=85.11 E-value=6.4 Score=37.82 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=93.6
Q ss_pred cCchHHHHHHhhc----C-------ChHHHHHHHHHHHHhcccccchhHHHhh-CcHHHHHHHhccC--CcHHHHHHHHH
Q 012677 296 LGAMTPLIDLLEE----G-------HPLAMKDVASAIFSLCILLENKRRAVHA-GAVRVILRKIMEN--SLVDELLAILA 361 (458)
Q Consensus 296 ~g~i~~Lv~lL~~----~-------~~~~~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~Lv~ll~~~--~~~~~a~~~L~ 361 (458)
.+|+..|+.+|.. + +......++.+|..|.....+...++.. +++..|+..|.+. .++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566667766642 1 3456788899999998888777776664 7899999888766 45667888888
Q ss_pred HhcCCH--HH-HHHHHhc----------CCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch-----hHHHHHHhhhhh
Q 012677 362 MLSSHQ--DA-IEEIGEL----------GAIPCLLRIIRESTCERNKENCAAILYNICFTDRT-----RTREIMEEENAN 423 (458)
Q Consensus 362 ~La~~~--~~-~~~i~~~----------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-----~~~~~~~~~g~~ 423 (458)
.+|..+ ++ ...++++ .-...||+.+.++.+.+.+..++..+=.|....++ ..+.-....|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 888743 24 4443222 23556788777555567777777666666665553 122333346777
Q ss_pred HHHHHHhhhCCHHHHHH
Q 012677 424 GTLSRLAENGTSRAKRK 440 (458)
Q Consensus 424 ~~L~~ll~~~~~~~~~~ 440 (458)
+.+-++-...++....+
T Consensus 206 ~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhccCChhHHHH
Confidence 77766655566655443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=84.20 E-value=0.58 Score=42.08 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHH
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVAS 319 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 319 (458)
|......- ....|..+++.++..+|..++..| . .+.|..+++++++.++..++.
T Consensus 67 R~~AA~~l-~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 67 RAIAVRYS-PVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp HHHHHTTS-CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 44444432 334456667777888888877542 1 134555666667777766665
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=17 Score=34.11 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=83.9
Q ss_pred HHHhcccCch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhc-CChHH
Q 012677 237 TILNLSIHDE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEE-GHPLA 313 (458)
Q Consensus 237 ~L~~ls~~~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~ 313 (458)
-|.||-.|+. ...-+++.. ++..+.-++..++.++....+..|...|....-+ ... ...+|.++..+.. ++.++
T Consensus 265 DLL~LLmHdSnAIDGFVk~D-Gv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSD-GVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTT-HHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhcccccccceeecc-cceeEEEEeecCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhccCCCcce
Confidence 3456666655 456778875 8888888999999999999999998886543222 222 5578888888864 58899
Q ss_pred HHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhc
Q 012677 314 MKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 314 ~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~ 348 (458)
.....+.|+|...+.. .+...+..|+++.|-..+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999999988875 5666788899999998875
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=82.94 E-value=16 Score=40.03 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=130.6
Q ss_pred hhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC--
Q 012677 168 SHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-- 244 (458)
Q Consensus 168 ~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-- 244 (458)
..+..++..+ +++.+.|.+|-..|..+-+. .++...+..+|..+ .++.++--|+..|.+....
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----------p~aw~~~~~iL~~s---~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----------PDAWQKADQILQFS---TNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----------TTGGGGHHHHHHHC---CCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----------ccHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhhh
Confidence 4677788777 45555777788788766653 34455555555432 3678888898888876432
Q ss_pred ----chhhhhhhcCCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHH
Q 012677 245 ----DENKRLVAENPLAIPLLIDSVRTG-----TIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAM 314 (458)
Q Consensus 245 ----~~~~~~i~~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 314 (458)
++.+..+... ++..+...-..+ ..-++...+.+|..++..+-. .. .+.++-|+.+++.+ +...
T Consensus 82 ~~L~~e~~~~Ir~~--Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p----~~Wp~~l~dL~~~l~~~-~~~~ 154 (1023)
T 4hat_C 82 KLLPNDHRIGIRNF--VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSSSS-VNVC 154 (1023)
T ss_dssp GGSCHHHHHHHHHH--HHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHTTTC-HHHH
T ss_pred hcCCHHHHHHHHHH--HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh----hhchHHHHHHHHHhcCC-HHHH
Confidence 2233333332 444444432221 244556677777777765411 12 56788888888653 4456
Q ss_pred HHHHHHHHHhccc------c---cchhH-----HHh--hCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHh
Q 012677 315 KDVASAIFSLCIL------L---ENKRR-----AVH--AGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGE 375 (458)
Q Consensus 315 ~~a~~aL~~L~~~------~---~~~~~-----i~~--~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~ 375 (458)
...+..|..|+.. . ..|.. +.. ..+++.+.++|.+. .+...++.+|......-. -..+.+
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~ 233 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYE 233 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcc
Confidence 6677777766443 1 11111 111 13444444555433 466778888888777322 334567
Q ss_pred cCCHHHHH-HHHhhcCChhHHhHHHHHHHHHhcc
Q 012677 376 LGAIPCLL-RIIRESTCERNKENCAAILYNICFT 408 (458)
Q Consensus 376 ~g~i~~Lv-~ll~~~~~~~~~~~a~~~L~~L~~~ 408 (458)
.+.++.+. .++. ++..+..|+.+|..+...
T Consensus 234 ~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 234 TNILELLSTKFMT---SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp SSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHcC---CHHHHHHHHHHHHHHHcc
Confidence 78888888 8876 378999999999999873
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=82.13 E-value=16 Score=35.87 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred cCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHH
Q 012677 308 EGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRI 385 (458)
Q Consensus 308 ~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~l 385 (458)
.|+.+.+.-|+..|.....+-+... .-++..++.|..+. .++..|+..|-.+|.+ +.-..+ +..|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHH
Confidence 4567777777777777665444322 23667777888766 4677788888888887 444444 5677888
Q ss_pred HhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 386 IRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 386 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
|+.. +..-....-.+|..|...++. +.+..|..-+..+++.+++++...|.
T Consensus 109 Lqtd-d~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 109 LQTD-DSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred Hhcc-chHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 8843 355566666677777665542 23444555555567777777666553
|
| >3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.57 E-value=0.21 Score=29.55 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.2
Q ss_pred CccccccccccccCCcc
Q 012677 78 YEFRCPISGEIMTDPVV 94 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~ 94 (458)
+.|.||+|+..+..|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45899999988887643
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=81.25 E-value=39 Score=36.72 Aligned_cols=291 Identities=9% Similarity=-0.013 Sum_probs=150.2
Q ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhhc-C---CcHHHHHHHHHHHHHHhh-Cch----hh
Q 012677 132 NHLVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMS-S---SLSDQKEAAKELRLLTKR-MPL----FR 202 (458)
Q Consensus 132 n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l~-~---~~~~~~~a~~~L~~l~~~-~~~----~~ 202 (458)
+...++..++|+.+-... | ++.......|. + +...|.-|+..|.+..+. +++ .+
T Consensus 21 d~~~r~~A~~~L~~~q~s-p----------------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S----------------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T----------------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-h----------------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 566677777777653211 1 12333444442 1 467777788777765542 222 33
Q ss_pred hhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCH-HHHHHHHHHHH
Q 012677 203 ALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTI-ETRRNAAAALF 281 (458)
Q Consensus 203 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~ 281 (458)
..+.+ ..+..+... .. .....-++.+...+|..+....-.. .=.+.++-|+.++++++. ........+|.
T Consensus 84 ~~lr~--~ll~~l~~~-~~--~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 84 QMIRD--SVWSYIKEL-SF--LDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp HHHHH--HHHHHHHHC-CS--TTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHh-cC--CCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 33333 333333331 10 1235577888888887777553100 112467778888876543 34444455555
Q ss_pred Hhhcc--C-c--------c-----hhHhhcc---CchHHHHHHhhc----CChHHHHHHHHHHHHhcccccchhHHHhhC
Q 012677 282 SLSAL--D-S--------N-----KLIIGKL---GAMTPLIDLLEE----GHPLAMKDVASAIFSLCILLENKRRAVHAG 338 (458)
Q Consensus 282 ~Ls~~--~-~--------~-----~~~i~~~---g~i~~Lv~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g 338 (458)
.|+.. + . . +..+.+. .+++....+|.. .++.++..++.+|......-+ ...++..+
T Consensus 155 ~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ 233 (980)
T 3ibv_A 155 SIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEP 233 (980)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHH
T ss_pred HhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcch
Confidence 44321 0 0 0 2222221 113333444433 677888888888887766433 34566778
Q ss_pred cHHHHHHHhccCCcHHHHHHHHHHhcC---CHHHHHHHHhcCCHHHHHHHHhh-cCChhHHhHHHHHHHHHhc------c
Q 012677 339 AVRVILRKIMENSLVDELLAILAMLSS---HQDAIEEIGELGAIPCLLRIIRE-STCERNKENCAAILYNICF------T 408 (458)
Q Consensus 339 ~v~~Lv~ll~~~~~~~~a~~~L~~La~---~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~~L~~L~~------~ 408 (458)
.++.+.++|.+++++..|+.+|..+.. .++.+..++..=.+...+..+.. ..+.+..+.-++.+..++. .
T Consensus 234 ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~ 313 (980)
T 3ibv_A 234 CMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKS 313 (980)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999988888999998888865 56666666543111111211111 2234444333333322211 1
Q ss_pred Cc-----hhHHHHH-HhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 409 DR-----TRTREIM-EEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 409 ~~-----~~~~~~~-~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.+ +...+.. .-.+.++.+...+.+.++.+...+...+..+.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 314 DPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp SCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred CccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 11 0000011 11256677777777777766665555544443
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=80.21 E-value=28 Score=32.69 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHH
Q 012677 185 KEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDS 264 (458)
Q Consensus 185 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~l 264 (458)
..+...|..|.. ......-++. .++|..+...+... +.++.....+.|...+....-...-.+ ..+|.++..
T Consensus 261 tR~FDLL~LLmH-dSnAIDGFVk-~DGv~~I~TvinYp----N~~l~RaG~KLLLQVSDaksL~~t~L~--e~LPFi~~~ 332 (619)
T 3c2g_A 261 IRTFDLLGLLLH-DSDAIDGFVR-SDGVGAITTVVQYP----NNDLIRAGCKLLLQVSDAKALAKTPLE--NILPFLLRL 332 (619)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHH-TTHHHHHHHHTTSS----CHHHHHHHHHHHHHHTTCGGGGTSCCT--THHHHHHHH
T ss_pred HHHHHHHHHHhc-ccccccceee-cccceeEEEEeecC----CcHHHHhhhheeeeecchHHHhhcccc--ccchHHHHH
Confidence 345555555554 3344555677 78899999998875 889999999999888754433222222 378888887
Q ss_pred Hh-cCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhh
Q 012677 265 VR-TGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLE 307 (458)
Q Consensus 265 L~-~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~ 307 (458)
+. +++.++.-...+.|.|...+... ++..+..|+|+.|-+...
T Consensus 333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 76 46889999999999999887754 555667899999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 458 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 1e-25 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 3e-18 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 1e-13 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 4e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-07 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 2e-11 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 6e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-08 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-07 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 6e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 0.001 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 2e-06 | |
| d1jm7b_ | 97 | g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie | 3e-06 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 7e-06 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 8e-06 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 3e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 7e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 0.001 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-04 | |
| d1ur6b_ | 52 | g.44.1.1 (B:) Not-4 N-terminal RING finger domain | 6e-04 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 97.5 bits (242), Expect = 1e-25
Identities = 36/74 (48%), Positives = 57/74 (77%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
P FRCPIS E+M DPV+++ GQT++R IQ+WLD G++TCP++++ L H L PN+++
Sbjct: 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 136 REMISQWCKEHGIE 149
+ +I+ WC+ +GIE
Sbjct: 65 KSLIALWCESNGIE 78
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.8 bits (188), Expect = 3e-18
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 76 LPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
+P IS E+M +P + +G T+DR I+ L P TR L+ LIPN +
Sbjct: 4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63
Query: 136 REMISQWCKEHG 147
+E+I + E+G
Sbjct: 64 KEVIDAFISENG 75
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (157), Expect = 1e-13
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 70 DDHLLGLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLD--EGNRTCPQTRQVLSHT 127
+ + + CPI E++ +PV F + C+ + L+ +G CP + ++
Sbjct: 12 QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71
Query: 128 VLIPNHLVREMI-------SQWCKEHGIE 149
L + +++ + + G+E
Sbjct: 72 SLQESTRFSQLVEELLKIICAFQLDTGLE 100
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 4e-13
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 77 PYEFRCPISGEIMTDPVVLANGQ-TFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLV 135
EF PI +M DPVVL + + T DR I R ++T P R L+ + PN +
Sbjct: 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARH-LLSDQTDPFNRSPLTMDQIRPNTEL 78
Query: 136 REMISQWCKEH 146
+E I +W E
Sbjct: 79 KEKIQRWLAER 89
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.8 bits (166), Expect = 4e-13
Identities = 37/212 (17%), Positives = 83/212 (39%), Gaps = 9/212 (4%)
Query: 208 STDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRT 267
+T AIP L L+ D D ++ + LS + ++ + +P + ++ +++
Sbjct: 15 ATRAIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 268 -GTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCI 326
+ET R A L +LS L I K G + L+ +L + + + +L +
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 327 L-LENKRRAVHAGAVRVILRKIMENSL---VDELLAILAMLSSHQDAIEEIGELGAIPCL 382
K AG ++ ++ + + ++ + + +Q++ I G L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 383 LRIIRESTCERNKENCAAILYNICFTDRTRTR 414
+ I+R T E+ + +L + +
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 2e-09
Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 4/126 (3%)
Query: 241 LSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMT 300
L ++ + ++ VR E AL L+ N+++I L +
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRM--EEIVEGCTGALHILARDVHNRIVIRGLNTIP 463
Query: 301 PLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENS--LVDELLA 358
+ LL + A + L E GA + + + + A
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523
Query: 359 ILAMLS 364
+L +S
Sbjct: 524 VLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 5e-08
Identities = 19/193 (9%), Positives = 67/193 (34%), Gaps = 6/193 (3%)
Query: 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLE-EGHPLAM 314
AIP L + AA + LS +++ I+ ++ ++ ++
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 315 KDVASAIFSLCILLENKRRAVHAGAVRVILRKI---MENSLVDELLAILAMLSSHQDAIE 371
+ A + +L E +G + +++ + +++ L + + +L + A
Sbjct: 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137
Query: 372 EIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431
+ G + ++ ++ ++ + L + + ++ I+ ++ +
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITT-DCLQILAYGNQESKLIILASGGPQALVNIMRT 196
Query: 432 NGTSRAKRKANGI 444
+ + +
Sbjct: 197 YTYEKLLWTTSRV 209
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 22/151 (14%)
Query: 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKD 316
AIP L+ + +T+R + ++ ++ ++
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM-------------------EEIVEG 438
Query: 317 VASAIFSLCILLENKRRAVHAGAVRVILRKIMENS--LVDELLAILAMLSSHQDAIEEIG 374
A+ L + N+ + + ++ + + +L L+ ++A E I
Sbjct: 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 498
Query: 375 ELGAIPCLLRIIRESTCERNKENCAAILYNI 405
GA L ++ S E AA+L+ +
Sbjct: 499 AEGATAPLTELL-HSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (118), Expect = 3e-07
Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 8/148 (5%)
Query: 138 MISQWCKEHGIE-LPKPIKDTDEDVVTDASRSHLNSLLEKMSSSLSDQKEAAKELRLLTK 196
+ ++ I L + + +D S + + L +L
Sbjct: 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA- 447
Query: 197 RMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPL 256
R R + + IPL + L + + L+ E +
Sbjct: 448 RDVHNRIVIRGL-NTIPLFVQLLY----SPIENIQRVAAGVLCELAQDKEAAEAIEAEG- 501
Query: 257 AIPLLIDSVRTGTIETRRNAAAALFSLS 284
A L + + + AAA LF +S
Sbjct: 502 ATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (138), Expect = 2e-11
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 82 CPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
C I E D + G C+ W + + CP R + T I
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.5 bits (136), Expect = 6e-11
Identities = 17/53 (32%), Positives = 19/53 (35%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
C I I+ DPV + F R CI R L CP R T L
Sbjct: 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
Query: 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAM 314
L IP + + + + + A + D K + +LG + L+DLL +
Sbjct: 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 315 KDVASAIFSLCIL-LENKRRAVHAGAVRVILR---KIMENSLVDELLAILAMLSSHQDAI 370
+ A A+ +L NK +R + + + +L +L LSS +
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 371 EEIGELGAIPCLLRIIRESTCERNKENCAA 400
EE+ R+I + + + +
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMS 151
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 23/246 (9%)
Query: 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIE 271
IP + LS D I + DE+ + I L+D +R+
Sbjct: 4 IPKAVQYLS----SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQN 59
Query: 272 TRRNAAAALFSLSALDS-NKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLEN 330
++ AA AL +L + NKL + + + LL ++ + + +
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119
Query: 331 KRRAVHAGAVRVIL------------------RKIMENSLVDELLAILAMLSSHQDAIEE 372
+ + A A+ V+ R++++ + L LSS +
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 373 IGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN 432
+ + L ++ ++ + ++ +C R E L A N
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239
Query: 433 GTSRAK 438
+
Sbjct: 240 AYTEKS 245
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 7e-07
Identities = 23/191 (12%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 230 LLEDLITTILNLSIHDENKRLVAEN---PLAIPLLIDSVRTGTIETRRNAAAALFSLS-- 284
+ + + + + + + + L+ S + T+E A L +
Sbjct: 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317
Query: 285 -ALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVI 343
+ ++LI K + + LL+ G+ ++ AS + ++ R + V
Sbjct: 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377
Query: 344 --------LRKIMENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNK 395
E+ L + +++S ++ + ++ + R S +
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437
Query: 396 ENCAAILYNIC 406
E +L ++
Sbjct: 438 EAARLLLSDMW 448
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.3 bits (116), Expect = 6e-07
Identities = 43/287 (14%), Positives = 102/287 (35%), Gaps = 9/287 (3%)
Query: 136 REMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKMSSS-LSDQKEAAKELRLL 194
R I E + D+ + + L + ++++S + +Q A + R +
Sbjct: 45 RNFIPPTDGADSDEEDESSVSADQQFYSQLQQE-LPQMTQQLNSDDMQEQLSATVKFRQI 103
Query: 195 TKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAEN 254
R +P L+ R + L + + N++ + V +
Sbjct: 104 LSREHRPPIDVVIQAGVVPRLVEF---MRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 160
Query: 255 PLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLA 313
A+PL I + TG++E + A AL +++ + + + AM P++ L P
Sbjct: 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL 220
Query: 314 MKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQDAIEEI 373
++ + +LC + + L K++ + + L+ +S D +E
Sbjct: 221 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA 280
Query: 374 GELGAIPCLLRIIRE---STCERNKENCAAILYNICFTDRTRTREIM 417
+ + + + E + + NI + +T+ ++
Sbjct: 281 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 327
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/156 (14%), Positives = 59/156 (37%), Gaps = 11/156 (7%)
Query: 225 DTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLS 284
+ ++ TI N++ + + + IP L+ + +T++ A A+ + S
Sbjct: 341 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 400
Query: 285 ALDSNKLIIGKL----GAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAV 340
+ + I + G + PL DLLE ++ A+ ++ + E + +
Sbjct: 401 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE-ADKEARGLNI 459
Query: 341 RVILRKIMENSLVDELLAILAMLSSHQDAIEEIGEL 376
I + ++ + +++ ++I E
Sbjct: 460 NENADFIEKAGGME----KIFNCQQNEN--DKIYEK 489
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 2e-06
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 4/47 (8%)
Query: 79 EFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125
RC P +L T C++ CP +
Sbjct: 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 3e-06
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 76 LPYEFRCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHL 134
L RC I+ +PV L F C+ + G C L N
Sbjct: 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQ 75
Query: 135 VREMISQWCK 144
+ MI K
Sbjct: 76 LDSMIQLCSK 85
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (96), Expect = 7e-06
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 82 CPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131
C ISG++ PV+ F++ +++++ + P T + LS ++
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 52
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Score = 41.5 bits (97), Expect = 8e-06
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 81 RCPISGEIMTDPVVLAN-GQTFDRPCIQRWLDEGNRTCPQTRQVLS 125
RCPI E ++ + F CI RW+ + N TCP + +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 3e-05
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 5/52 (9%)
Query: 79 EFRCPISGEIMTDP-----VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLS 125
+ CP +V G T C+ G CP+ L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 238 ILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLI--IGK 295
+ N++ +++ N +P L+ + +T++ AA A+ + ++ + + I +
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355
Query: 296 LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDE 355
G + PL++LL ++ + AI ++ E L ++E
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE-------TEKLSIMIEEC---G 405
Query: 356 LLAILAMLSSHQDAIEEIGEL 376
L + L H++ E + +
Sbjct: 406 GLDKIEALQRHEN--ESVYKA 424
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 0.001
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 338 GAVRVILRKIMENSLVDELLAILA---MLSS-HQDAIEEIGELGAIPCLLRIIRESTCER 393
+V I++ I N+L +L A A +LS Q I+ I G IP + + ++ C
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72
Query: 394 NKENCAAILYNICFTDRTRTREIM 417
+ A L NI +T+ ++
Sbjct: 73 IQFESAWALTNIASGTSEQTKAVV 96
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 6/195 (3%)
Query: 259 PLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDV 317
P ++ + + R A L L N +L M L+ LE G
Sbjct: 20 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79
Query: 318 ASAIFSLC-ILLENKRRAVHAGAVRVILRKIMENS---LVDELLAILAMLSSHQDAIEEI 373
A I + + + + + GA+R +LR + ++ + + L ++ L Q+A
Sbjct: 80 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139
Query: 374 GELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG 433
+L + ++ K A +L N+ + + L L
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRTE 198
Query: 434 TSRAKRKANGILERL 448
S G L L
Sbjct: 199 HSPFHEHVLGALCSL 213
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 6e-04
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 82 CPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126
CP+ E + G R C R + N CP R+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.9 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.9 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.89 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.89 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.86 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.85 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.79 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.78 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.77 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.64 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.6 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.55 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.52 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 99.38 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 99.37 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 99.28 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 99.25 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 99.23 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.96 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.85 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.84 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.51 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.5 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.49 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.49 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.44 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.15 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 98.13 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.1 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.07 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.84 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.82 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.7 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.68 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.57 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.5 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.45 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.24 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.1 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.72 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.46 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.29 | |
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 94.2 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.89 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 93.77 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 92.77 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 92.03 | |
| d2cs3a1 | 80 | Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ | 92.02 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 91.55 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 88.3 | |
| d1wila_ | 89 | Hypothetical protein KIAA1045 {Human (Homo sapiens | 86.76 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 84.89 | |
| d1ibia2 | 31 | Cysteine-rich (intestinal) protein, CRP, CRIP {Jap | 82.41 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 81.72 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 81.21 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 81.04 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.3e-25 Score=224.06 Aligned_cols=274 Identities=18% Similarity=0.177 Sum_probs=239.4
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
++++.|++.|. ++...+..|+..+..++.. +..+..+....|+++.|+.+|... .+.++++.|+.+|.+++.+++
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~~~~ 92 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE 92 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhCCch
Confidence 57999999995 6688999999999999975 555555555368899999999764 378999999999999999999
Q ss_pred hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhc
Q 012677 247 NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLC 325 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~ 325 (458)
++..+++.| ++|.|+.+|++++.+++..|+++|.+|+.+.++ +..+.+.|+|+.|+.+|++++++++..++.+|.+++
T Consensus 93 ~~~~i~~~g-~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 171 (529)
T d1jdha_ 93 GLLAIFKSG-GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHCC-CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence 999999985 999999999999999999999999999987765 666778999999999999999999999999999999
Q ss_pred cccc-chhHHHhhCcHHHHHHHhccC---CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHH
Q 012677 326 ILLE-NKRRAVHAGAVRVILRKIMEN---SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAI 401 (458)
Q Consensus 326 ~~~~-~~~~i~~~g~v~~Lv~ll~~~---~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~ 401 (458)
..++ ++..+.+.|+++.|+.++..+ .++..++.++.+++.+++++..+++.|+++.|+.++.+. +.+++.+++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~ 250 (529)
T d1jdha_ 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWT 250 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhccc-chhhhhhhhhH
Confidence 7654 566678899999999999765 467889999999999999999999999999999999965 59999999999
Q ss_pred HHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 402 LYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 402 L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
|.+++....... ...|+++.|+.++.+++..++..|+++|++++..
T Consensus 251 l~~ls~~~~~~~----~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~ 296 (529)
T d1jdha_ 251 LRNLSDAATKQE----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHTTCTTCS----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHhccccccchh----hhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence 999987654321 1257899999999999999999999999999854
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=2.3e-22 Score=199.02 Aligned_cols=280 Identities=15% Similarity=0.164 Sum_probs=229.1
Q ss_pred hhhhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCch-hhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPL-FRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
+++++.+|+.+ +++++.+..|+..++++...... ....+.+ .|++|.|+++|++. .+.+++..|+++|.+++.+
T Consensus 12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~-~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~la~~ 87 (434)
T d1q1sc_ 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR-AGLIPKFVSFLGKT---DCSPIQFESAWALTNIASG 87 (434)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHH-TTCHHHHHHHTTCG---GGHHHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHH-CCCHHHHHHHHccC---CCHHHHHHHHHHHHHHhcC
Confidence 45799999999 57789999999999988653332 2456777 89999999999764 3678999999999999876
Q ss_pred ch-hhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCc------------------------
Q 012677 245 DE-NKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGA------------------------ 298 (458)
Q Consensus 245 ~~-~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~------------------------ 298 (458)
.+ .+..+... |++|.|+.+|.+++.++++.|+++|.|++.+++ .+..+.+.|+
T Consensus 88 ~~~~~~~i~~~-~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 166 (434)
T d1q1sc_ 88 TSEQTKAVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166 (434)
T ss_dssp CHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred ChhhhhHhhhc-cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHH
Confidence 54 67777776 599999999999999999999999999987543 2333333333
Q ss_pred -----------------------hHHHHHHhhcCChHHHHHHHHHHHHhcccccc-hhHHHhhCcHHHHHHHhccC--Cc
Q 012677 299 -----------------------MTPLIDLLEEGHPLAMKDVASAIFSLCILLEN-KRRAVHAGAVRVILRKIMEN--SL 352 (458)
Q Consensus 299 -----------------------i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~ 352 (458)
++.|+.++.+++++++..++++|.+|+..+.. ...+...|+++.|++++.++ .+
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~ 246 (434)
T d1q1sc_ 167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 246 (434)
T ss_dssp HHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhh
Confidence 44455555666788888999999999887654 44467789999999999877 57
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhh
Q 012677 353 VDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAE 431 (458)
Q Consensus 353 ~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~ 431 (458)
+..++.+|.+++. +++.+..+.+.|+++.|+.++.+. ++.++..|+++|.+|+...... ...+.+.|+++.++.++.
T Consensus 247 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~li~~l~ 324 (434)
T d1q1sc_ 247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ-IQQVVNHGLVPFLVGVLS 324 (434)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHHH
T ss_pred hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchh-HHHHhhhhhHHHHHHHHh
Confidence 8899999999988 677888999999999999999965 4899999999999999877654 355556899999999999
Q ss_pred hCCHHHHHHHHHHHHHHHhhHh
Q 012677 432 NGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 432 ~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
++++.++..|+++|.++..+..
T Consensus 325 ~~~~~v~~~a~~~l~nl~~~~~ 346 (434)
T d1q1sc_ 325 KADFKTQKEAAWAITNYTSGGT 346 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSC
T ss_pred ccChHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999987643
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=7e-22 Score=195.49 Aligned_cols=280 Identities=15% Similarity=0.156 Sum_probs=234.1
Q ss_pred hhhhhhHHhhc--CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS--SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
+.++.|++.|. .+++.|..|+..|.+++..++..+..+.+ .|+++.|+.+|.+. +..+++.|+++|.|++.+.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~-~~~i~~l~~~L~~~----~~~~~~~a~~~L~nl~~~~ 130 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP----HAHISEQAVWALGNIAGDG 130 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh-ccchhhhhhccccC----CHHHHHHHHHHHHHHhccc
Confidence 57889999995 34667889999999999888888888998 99999999999875 8899999999999998654
Q ss_pred h-hhhhhhcCC----------------------------------------------CCHHHHHHHHhcCCHHHHHHHHH
Q 012677 246 E-NKRLVAENP----------------------------------------------LAIPLLIDSVRTGTIETRRNAAA 278 (458)
Q Consensus 246 ~-~~~~i~~~~----------------------------------------------~~i~~Lv~lL~~~~~~~~~~a~~ 278 (458)
+ .+..+...+ ++++.|+.++.+++.+++..+++
T Consensus 131 ~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~ 210 (434)
T d1q1sc_ 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 210 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHh
Confidence 4 333333332 12334555666777888999999
Q ss_pred HHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHH
Q 012677 279 ALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVD 354 (458)
Q Consensus 279 ~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~ 354 (458)
+|.+|+..++. ...+...|+++.|+.++.+++..++..++.+|.+++...+ .+..+++.|+++.|+.++.++ .++.
T Consensus 211 ~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~ 290 (434)
T d1q1sc_ 211 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 290 (434)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred hhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhH
Confidence 99999877654 5556679999999999999999999999999999998665 566788999999999999877 5789
Q ss_pred HHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC
Q 012677 355 ELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG 433 (458)
Q Consensus 355 ~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 433 (458)
.++.+|.+|+. .++.+..+.+.|+++.++.++.+. +..++..|+++|.+++..........+.+.|+++.|+.++.+.
T Consensus 291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 369 (434)
T d1q1sc_ 291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 369 (434)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS
T ss_pred HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC
Confidence 99999999988 677888899999999999999965 4999999999999999876544344455689999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhHh
Q 012677 434 TSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 434 ~~~~~~~A~~~L~~l~~~~~ 453 (458)
++.+...+..+|.++.++.+
T Consensus 370 d~~~~~~~l~~l~~ll~~~~ 389 (434)
T d1q1sc_ 370 DTKIIQVILDAISNIFQAAE 389 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=5.4e-22 Score=200.89 Aligned_cols=278 Identities=16% Similarity=0.126 Sum_probs=240.5
Q ss_pred hhhhhhhHHhhcC--CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 167 RSHLNSLLEKMSS--SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 167 ~~~l~~Lv~~l~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.+.++.|++.+.. +...+..|+..|.+++..++.....+.+ .|+++.|+.+|.+. +.+++..|+++|.|++.+
T Consensus 118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~-~g~i~~l~~lL~s~----~~~i~~~a~~~L~nia~~ 192 (503)
T d1wa5b_ 118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD 192 (503)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHHhcCC----ChhHHHHHHHHHHHHhhh
Confidence 4578899999963 4668899999999999888888888888 89999999999875 889999999999999876
Q ss_pred c-hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 245 D-ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 245 ~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
. ..+..+...| +++.|+.++.+.+..++..++++|.+|+..... .......|+++.|+.++.+.+++++..++++|.
T Consensus 193 ~~~~r~~l~~~~-~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~ 271 (503)
T d1wa5b_ 193 STDYRDYVLQCN-AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 271 (503)
T ss_dssp CHHHHHHHHHTT-CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhc-ccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 5 5677777774 899999999999999999999999999987654 344445789999999999999999999999999
Q ss_pred Hhcccccc-hhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHH
Q 012677 323 SLCILLEN-KRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENC 398 (458)
Q Consensus 323 ~L~~~~~~-~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 398 (458)
+|+....+ ...+++.|+++.|+.++.++ .++..++.+|.+++. .+.....+.+.|+++.|..++.+. ++.++..+
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~ 350 (503)
T d1wa5b_ 272 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEA 350 (503)
T ss_dssp HHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred hhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHH
Confidence 99986654 56688899999999999877 578889999999998 566777788999999999999865 59999999
Q ss_pred HHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 399 AAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 399 ~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+++|.|++.+++... ..+.+.|+++.++.++.+++..++..|+++|.++....
T Consensus 351 ~~~l~nl~~~~~~~~-~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 403 (503)
T d1wa5b_ 351 CWTISNITAGNTEQI-QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 403 (503)
T ss_dssp HHHHHHHTTSCHHHH-HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccHHHH-HHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence 999999999887654 44446899999999999999999999999999998654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.5e-21 Score=197.54 Aligned_cols=279 Identities=15% Similarity=0.198 Sum_probs=235.2
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHh-hCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTK-RMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
..++.+++.+. .+...+..|+..++.+.. ........+.+ .|+++.|+.+|+.. .+..++..|+++|.|++.+.
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~-~g~i~~Lv~~l~~~---~~~~iq~~a~~~L~ni~~~~ 151 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQ-AGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGT 151 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH-TTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH-CCChHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCC
Confidence 35777888874 567888999999987663 33334556777 89999999999864 36789999999999999876
Q ss_pred hhhh-hhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC-cchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHH
Q 012677 246 ENKR-LVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD-SNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFS 323 (458)
Q Consensus 246 ~~~~-~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 323 (458)
+... .+.. .|+++.++.+|.+++.+++..|+++|.||+... +++..+.+.|++++|+.++.+.+..++..++++|.+
T Consensus 152 ~~~~~~~~~-~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~n 230 (503)
T d1wa5b_ 152 SAQTKVVVD-ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 230 (503)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHH
Confidence 6444 4555 469999999999999999999999999998765 668889999999999999999999999999999999
Q ss_pred hcccccchhH-HHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHH
Q 012677 324 LCILLENKRR-AVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCA 399 (458)
Q Consensus 324 L~~~~~~~~~-i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~ 399 (458)
++........ ....|+++.|+.++.+. .+...++++|.+|+. .++....+.+.|+++.|+.++.++ +..++..|+
T Consensus 231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al 309 (503)
T d1wa5b_ 231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPAL 309 (503)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHH
T ss_pred HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC-chhhhhhHH
Confidence 9987654443 45578999999999876 578889999999997 677788899999999999999965 599999999
Q ss_pred HHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 400 AILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 400 ~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
.+|.+|+.+.... ...+...|+++.|..++.+.++.++..++++|.+++...+
T Consensus 310 ~~l~nl~~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~ 362 (503)
T d1wa5b_ 310 RAVGNIVTGNDLQ-TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 362 (503)
T ss_dssp HHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHH-HHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccH
Confidence 9999999877654 4556668999999999999999999999999999986543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.6e-21 Score=198.56 Aligned_cols=278 Identities=14% Similarity=0.103 Sum_probs=236.9
Q ss_pred hhhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch
Q 012677 168 SHLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE 246 (458)
Q Consensus 168 ~~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~ 246 (458)
+.++.|++.|+ ++++.+..|+..|.+++.+++..+..+.+ .|+|+.|+.+|+++ +..++..++.+|.+++..++
T Consensus 101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~ 175 (529)
T d1jdha_ 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT----NVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHcc----ChHHHHHHHHHHHHHhhhhh
Confidence 57899999995 66889999999999999999999999988 99999999999875 88999999999999997655
Q ss_pred -hhhhhhcCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHh
Q 012677 247 -NKRLVAENPLAIPLLIDSVRTG-TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSL 324 (458)
Q Consensus 247 -~~~~i~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 324 (458)
++..+... |+++.|+.++..+ ...++..+++++.+++.+++++..+.+.|+++.|+.++.+++.+++..++++|.++
T Consensus 176 ~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 176 ESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence 55566665 5899999999765 57899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhh-cCChhHHhHHHH
Q 012677 325 CILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRE-STCERNKENCAA 400 (458)
Q Consensus 325 ~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~a~~ 400 (458)
+..... .....|+++.|++++.++ .++..++.+|.+|+. +++++..+.+.|+++.|+.++.. +..+.+++.|++
T Consensus 255 s~~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~ 332 (529)
T d1jdha_ 255 SDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHH
Confidence 755443 234468999999999876 578889999999987 78899999999999999998863 345789999999
Q ss_pred HHHHHhccCch--hHHHHHHhhhhhHHHHHHhhhCC-HHHHHHHHHHHHHHHhhHh
Q 012677 401 ILYNICFTDRT--RTREIMEEENANGTLSRLAENGT-SRAKRKANGILERLNKAAL 453 (458)
Q Consensus 401 ~L~~L~~~~~~--~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~ 453 (458)
+|.+|+..... ..+..+...|+++.|+.++..++ ...+..+.++|++++....
T Consensus 333 aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~ 388 (529)
T d1jdha_ 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhh
Confidence 99999976542 23455566889999999997754 4678889999999986543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.5e-20 Score=184.67 Aligned_cols=279 Identities=14% Similarity=0.149 Sum_probs=219.6
Q ss_pred hhhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-ch
Q 012677 169 HLNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DE 246 (458)
Q Consensus 169 ~l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~ 246 (458)
+|+.||+.|+ ++++.|..|+..|.+++.+++.+|..+.+ .|+|+.|+.+|++. +++++..|+++|.+|+.+ ++
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~----~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCcHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCCHH
Confidence 5889999995 77999999999999999999999999999 99999999999875 899999999999999954 55
Q ss_pred hhhhhhcCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCc-------------------------------------
Q 012677 247 NKRLVAENPLAIPLLIDSVRT-GTIETRRNAAAALFSLSALDS------------------------------------- 288 (458)
Q Consensus 247 ~~~~i~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~------------------------------------- 288 (458)
++..+.+.| +++.|+.++.+ .+.+++..|+++|.+|+..+.
T Consensus 78 ~~~~i~~~g-~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 78 NKLETRRQN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHTT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHCC-ChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhccccc
Confidence 788888875 89999998865 577888888888888875432
Q ss_pred -------------------chhHhh-ccCchHHHHHHhh-----------------------------------------
Q 012677 289 -------------------NKLIIG-KLGAMTPLIDLLE----------------------------------------- 307 (458)
Q Consensus 289 -------------------~~~~i~-~~g~i~~Lv~lL~----------------------------------------- 307 (458)
++..+. ..|+++.|+.+++
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence 111111 2455666655442
Q ss_pred ---------------------------------------------------------c-CChHHHHHHHHHHHHhccccc
Q 012677 308 ---------------------------------------------------------E-GHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 308 ---------------------------------------------------------~-~~~~~~~~a~~aL~~L~~~~~ 329 (458)
. .++..+..+..++.+++....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence 1 123444556667777765443
Q ss_pred ------chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhc-----CChhHHh
Q 012677 330 ------NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRES-----TCERNKE 396 (458)
Q Consensus 330 ------~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~~~~ 396 (458)
.+..+.+.|+++.|++++.++ .++..++.+|.+|+.+++++..+.+ ++++.|+.+|... .+++++.
T Consensus 317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~ 395 (457)
T d1xm9a1 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHH
Confidence 233355679999999999877 6789999999999999999888765 6799999999742 2357899
Q ss_pred HHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh-CCHHHHHHHHHHHHHHHhhHhhh
Q 012677 397 NCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN-GTSRAKRKANGILERLNKAALIV 455 (458)
Q Consensus 397 ~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~ 455 (458)
.|+++|.+|+..+++.. ..+.+.|+++.|+.++.+ +++.+++.|+.+|.+|..+.+.+
T Consensus 396 ~a~~~L~~l~~~~~~~~-~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~ 454 (457)
T d1xm9a1 396 SACYTVRNLMASQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHTTCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHhcCCHHHH-HHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence 99999999998776554 455568999999999976 47889999999999998766544
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=1.5e-22 Score=150.01 Aligned_cols=75 Identities=48% Similarity=1.054 Sum_probs=70.7
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGIE 149 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~~ 149 (458)
+++++|.||||+++|+|||+++|||+||+.||.+|+..+...||.|+.+++...+.||..++++|++|+.+||++
T Consensus 4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e 78 (78)
T d1t1ha_ 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence 488999999999999999999999999999999999876778999999999999999999999999999999864
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=2.8e-22 Score=149.17 Aligned_cols=74 Identities=32% Similarity=0.489 Sum_probs=69.7
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
++|++|.||||+++|+|||+++|||+||+.||.+|+..+..+||.|+.+++...+.||..++++|++|+.+||.
T Consensus 3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~ 76 (80)
T d2c2la2 3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 76 (80)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence 47999999999999999999999999999999999987777899999999988999999999999999998874
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=9.1e-19 Score=161.90 Aligned_cols=189 Identities=18% Similarity=0.168 Sum_probs=165.6
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCc-chhHhhccCchHHHHH
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLI-DSVRTGTIETRRNAAAALFSLSALDS-NKLIIGKLGAMTPLID 304 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~ 304 (458)
+.+.+..|+.+|.+|+.+.+++..+...| +++.++ .++++++.+++..|+.+|.+++.+++ .+..+.+.|+|+.|+.
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~g-g~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcC-CHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 56888999999999999989999999986 677676 47888999999999999999998664 5777888999999999
Q ss_pred Hhhc-CChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcCCH
Q 012677 305 LLEE-GHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELGAI 379 (458)
Q Consensus 305 lL~~-~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g~i 379 (458)
+|.+ .++.++..++++|.+|+.+.+ ++..+...|+++.|+++|.++ .++..++.+|.+|+. +++.+..+.+.|++
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v 188 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence 9976 478899999999999998665 566788999999999999877 678889999999987 78999999999999
Q ss_pred HHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH
Q 012677 380 PCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM 417 (458)
Q Consensus 380 ~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 417 (458)
+.|+.+|.++ ++.+++.|+++|.+|+...+.....+.
T Consensus 189 ~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~~~~~~~ 225 (264)
T d1xqra1 189 QQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECR 225 (264)
T ss_dssp HHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999865 599999999999999988876544443
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.7e-19 Score=138.73 Aligned_cols=78 Identities=33% Similarity=0.476 Sum_probs=69.9
Q ss_pred CCcCCCCCCccccccccccccCCccCCCc-ccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHHHhCC
Q 012677 70 DDHLLGLPYEFRCPISGEIMTDPVVLANG-QTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCKEHGI 148 (458)
Q Consensus 70 ~~~~~~~~~~~~C~ic~~~~~~p~~l~cg-h~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~~~~~ 148 (458)
+....++|++|.||||+++|.|||+++|| |+||+.||.+|+.. +.+||+|++++....+.||..++..|++|+.++..
T Consensus 13 ~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~ 91 (98)
T d1wgma_ 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred HhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence 34455789999999999999999999866 58999999999985 56899999999999999999999999999998764
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2e-18 Score=159.53 Aligned_cols=185 Identities=18% Similarity=0.168 Sum_probs=163.4
Q ss_pred hcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhccccc-chhHHHhhCcHHHH
Q 012677 266 RTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLE-NKRRAVHAGAVRVI 343 (458)
Q Consensus 266 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L 343 (458)
...+.+.+..|+.+|.+|+.+.+++..+...|++++|+. ++++++++++..|+.+|.+++.+.+ .+..+++.|+++.|
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 445678899999999999988899999999999999986 7788899999999999999998665 66778899999999
Q ss_pred HHHhccC---CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHh
Q 012677 344 LRKIMEN---SLVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEE 419 (458)
Q Consensus 344 v~ll~~~---~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 419 (458)
++++.+. .++..++.+|.+|+. ++.++..+...|+++.|++++.+. +..++..++++|.+|+..++... ..+..
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~-~~~~~ 184 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHK-GTLCS 184 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 9999754 478899999999997 788999999999999999999965 59999999999999998877654 44555
Q ss_pred hhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 420 ENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 420 ~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.|+++.|+.++.++++.+++.|+++|.+|+...
T Consensus 185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999998654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.1e-16 Score=156.67 Aligned_cols=240 Identities=22% Similarity=0.241 Sum_probs=180.0
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cC
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSA-LD 287 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~-~~ 287 (458)
+.||.|+.+|+++ +++++..|+.+|.|++.+ ++++..+.+.| ++|.|+++|++++.+++..|+++|.+|+. ++
T Consensus 2 ~~ip~lv~~L~~~----~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 76 (457)
T d1xm9a1 2 LTIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLG-GICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp CCHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTT-HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHhCCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4689999999986 999999999999999965 56899999985 99999999999999999999999999995 45
Q ss_pred cchhHhhccCchHHHHHHhhc-CChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc--------------c---
Q 012677 288 SNKLIIGKLGAMTPLIDLLEE-GHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM--------------E--- 349 (458)
Q Consensus 288 ~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~--------------~--- 349 (458)
+++..+.+.|+|+.|+.++.+ .++.++..|+++|.+++.....+......|+.+.+..++. .
T Consensus 77 ~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhccccc
Confidence 678999999999999998865 4788999999999999887766655554433333222221 0
Q ss_pred CCcHHHHHHHHHHhcCCHHHHHHHHh-cCCHHHHH---------------------------------------------
Q 012677 350 NSLVDELLAILAMLSSHQDAIEEIGE-LGAIPCLL--------------------------------------------- 383 (458)
Q Consensus 350 ~~~~~~a~~~L~~La~~~~~~~~i~~-~g~i~~Lv--------------------------------------------- 383 (458)
..++..++.+|.+++.+++++..+.. .|+++.|+
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence 02455566666666666555554433 23344444
Q ss_pred -----------------------------------------------------HHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 384 -----------------------------------------------------RIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 384 -----------------------------------------------------~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
.++....++..++.+.+++.+++....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence 444333346667778888888876554
Q ss_pred hh----HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHhh
Q 012677 411 TR----TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAALI 454 (458)
Q Consensus 411 ~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~ 454 (458)
.. .+..+...|+++.|+.++.+.++.++..|+++|.+|+.....
T Consensus 317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~ 364 (457)
T d1xm9a1 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG
T ss_pred cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH
Confidence 21 234445578999999999999999999999999999876543
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=3e-17 Score=121.68 Aligned_cols=65 Identities=28% Similarity=0.386 Sum_probs=54.1
Q ss_pred CCCCccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc-ccHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI-PNHLVREMI 139 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~-~n~~l~~~i 139 (458)
++.+++.||||++.|.+|++++|||+||+.||.+|++.+...||.||.++...++. |...+...+
T Consensus 19 d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred hhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 34456789999999999999999999999999999987677899999999876654 555555544
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1e-16 Score=124.95 Aligned_cols=67 Identities=18% Similarity=0.430 Sum_probs=57.5
Q ss_pred CCccccccccccccCCccCCCcccccHHHHHHHHhcC--CCCCCCCCccCCCCCCcccHHHHHHHHHHH
Q 012677 77 PYEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEG--NRTCPQTRQVLSHTVLIPNHLVREMISQWC 143 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~--~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~ 143 (458)
.+.+.||||+++|.+|++++|||+||+.||.+|+... ...||.||.++....+.+|..++.+++++.
T Consensus 19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~ 87 (103)
T d1jm7a_ 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (103)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 3456799999999999999999999999999999753 358999999999888888887777777664
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=5.6e-16 Score=105.72 Aligned_cols=51 Identities=22% Similarity=0.485 Sum_probs=45.4
Q ss_pred cccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcc
Q 012677 80 FRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIP 131 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~ 131 (458)
+.||||++.|+|||.+ .|||+||+.||.+|+.+ +.+||+||++++..++.|
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLip 52 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 52 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEE
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhcee
Confidence 4699999999999988 59999999999999996 568999999998877654
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.9e-15 Score=116.21 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=58.6
Q ss_pred CCCccccccccccccCCccC-CCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCcccHHHHHHHHHHHH
Q 012677 76 LPYEFRCPISGEIMTDPVVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLIPNHLVREMISQWCK 144 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~~n~~l~~~i~~~~~ 144 (458)
+.+.+.||||.++|.+||++ +|||+||+.||.+|+.. .||.||.++....+.+|..++.+++.|..
T Consensus 19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 85 (97)
T d1jm7b_ 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (97)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence 45667899999999999986 79999999999999853 59999999998899999999999987753
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.8e-14 Score=105.63 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=44.6
Q ss_pred cccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCC
Q 012677 80 FRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTV 128 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~ 128 (458)
..||||++.+.+|++++|||.||+.||.+|+..+.++||+||..+....
T Consensus 24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 4699999999999999999999999999999866778999999997643
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.3e-14 Score=97.94 Aligned_cols=53 Identities=21% Similarity=0.421 Sum_probs=42.8
Q ss_pred Ccccccccccccc-CC----ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 78 YEFRCPISGEIMT-DP----VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 78 ~~~~C~ic~~~~~-~p----~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
++..||||++.+. +| ++++|||.||..||.+|+..+...||.||+++....++
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~ 59 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence 4678999998653 22 45689999999999999987677899999999876543
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.9e-14 Score=94.88 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred CccccccccccccCCccCCCcccccHHHHHHHHhcCCCCCCCCCccCCCCCCc
Q 012677 78 YEFRCPISGEIMTDPVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSHTVLI 130 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~~~~~ 130 (458)
+.+.|+||++.+.+|++++|||+||+.||.+| ..+||.||++++...-.
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~ 53 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCC
Confidence 44689999999999999999999999999754 45799999999765433
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=99.28 E-value=6.6e-13 Score=94.26 Aligned_cols=45 Identities=33% Similarity=0.626 Sum_probs=39.7
Q ss_pred ccccccccccCCcc-CCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTDPVV-LANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~p~~-l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.||||++.+.+|++ ++|||+||..||.+|++. +.+||.||.++..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~ 52 (68)
T d1chca_ 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHh
Confidence 49999999988765 699999999999999986 5689999998753
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.9e-12 Score=86.28 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=38.8
Q ss_pred ccccccccccC----CccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTD----PVVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~----p~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.||||++.|.+ ++.++|||.||+.||.+|+..+..+||+||+++..
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 59999998853 33458999999999999998766789999999864
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.23 E-value=2.3e-12 Score=86.79 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=39.7
Q ss_pred CCCccccccccccccCC---ccC-CCcccccHHHHHHHHhcCCCCCCCCCccC
Q 012677 76 LPYEFRCPISGEIMTDP---VVL-ANGQTFDRPCIQRWLDEGNRTCPQTRQVL 124 (458)
Q Consensus 76 ~~~~~~C~ic~~~~~~p---~~l-~cgh~fc~~ci~~~~~~~~~~CP~c~~~l 124 (458)
+.++..|+||++.+.+. +.+ +|||.||..||.+|++. +.+||+||.++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 34667799999999753 344 59999999999999985 66899999876
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=2e-10 Score=90.47 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=38.3
Q ss_pred ccccccccccccCC------------------ccCCCcccccHHHHHHHHhcC----CCCCCCCCccCCC
Q 012677 79 EFRCPISGEIMTDP------------------VVLANGQTFDRPCIQRWLDEG----NRTCPQTRQVLSH 126 (458)
Q Consensus 79 ~~~C~ic~~~~~~p------------------~~l~cgh~fc~~ci~~~~~~~----~~~CP~c~~~l~~ 126 (458)
+..|+||++.|.++ ..++|||.||..||..|+... +.+||+||..+..
T Consensus 25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 45699999988653 246899999999999999743 3589999987743
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.85 E-value=1.2e-09 Score=74.88 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=41.0
Q ss_pred CCccccccccccccCCccCCC-----cccccHHHHHHHHhc-CCCCCCCCCccCC
Q 012677 77 PYEFRCPISGEIMTDPVVLAN-----GQTFDRPCIQRWLDE-GNRTCPQTRQVLS 125 (458)
Q Consensus 77 ~~~~~C~ic~~~~~~p~~l~c-----gh~fc~~ci~~~~~~-~~~~CP~c~~~l~ 125 (458)
++...|+||++.+.++...+| +|.||..||.+|+.. ++.+||+||+++.
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~ 58 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence 456679999999988877765 599999999999964 5668999999875
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=7.5e-10 Score=82.43 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=36.7
Q ss_pred ccccccccccCC------------------ccCCCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 81 RCPISGEIMTDP------------------VVLANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 81 ~C~ic~~~~~~p------------------~~l~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
.|+||.+.+.++ +.++|||.||..||.+|+.. +.+||+||+++..
T Consensus 23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 85 (88)
T d3dplr1 23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 85 (88)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCcccc
Confidence 499998877652 23589999999999999986 6689999998753
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.1e-06 Score=86.24 Aligned_cols=219 Identities=12% Similarity=0.116 Sum_probs=150.0
Q ss_pred hHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchh
Q 012677 212 IPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKL 291 (458)
Q Consensus 212 i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 291 (458)
++.|..++.. .+..+++.|+.+|..+...... ..+.. .++|.+..+.++.....|..|+.++..+...-...
T Consensus 89 l~~l~~l~~~----~~~~Vr~~a~~~l~~i~~~~~~-~~~~~--~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~- 160 (588)
T d1b3ua_ 89 LPPLESLATV----EETVVRDKAVESLRAISHEHSP-SDLEA--HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA- 160 (588)
T ss_dssp HHHHHHHTTS----SCHHHHHHHHHHHHHHHTTSCH-HHHHH--THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-
T ss_pred HHHHHHHccC----CCHHHHHHHHHHHHHHHHhCCH-HHHHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH-
Confidence 4444455544 3678888888888877654332 22222 25665556666666777777777777765432211
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC--CH
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS--HQ 367 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~--~~ 367 (458)
+ ....++.+..++.+.++.+|..++.++..++..-... ......++.+..++.++ .++..++.+|..++. .+
T Consensus 161 -~-~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~ 236 (588)
T d1b3ua_ 161 -V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp -H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred -H-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH
Confidence 1 1224677888888899999999999999998754322 23456778888888877 467778888888865 33
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHH
Q 012677 368 DAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILER 447 (458)
Q Consensus 368 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~ 447 (458)
+.... ..++.+..++.+. +..++..++.+|..++..-... .. ....++.+..++.+.++.++..|...|..
T Consensus 237 ~~~~~----~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~~---~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l~~ 307 (588)
T d1b3ua_ 237 EDLEA----LVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE---IT-KTDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHHHH----HTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH---HH-HHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhhh---hh-hhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence 33222 2578888888754 5899999999999998654322 12 13568889999999999999999999988
Q ss_pred HHhh
Q 012677 448 LNKA 451 (458)
Q Consensus 448 l~~~ 451 (458)
++..
T Consensus 308 ~~~~ 311 (588)
T d1b3ua_ 308 FCEN 311 (588)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=6.8e-06 Score=82.45 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=174.6
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
|..|++.|. ++...|..|++.|..++..-..-+ .. ...+|.|.+.+.. +.+++..++..|.++...-. .
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~--~~--~~lip~l~~~~~~-----~~ev~~~~~~~l~~~~~~~~-~ 81 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TR--SELLPFLTDTIYD-----EDEVLLALAEQLGTFTTLVG-G 81 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HH--HTHHHHHHHTCCC-----CHHHHHHHHHHHTTCSGGGT-S
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHh--hH--HHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHHHcC-C
Confidence 667888885 668889999999988876321111 11 2568888888875 44677777777777654211 1
Q ss_pred hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccc
Q 012677 249 RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~ 328 (458)
...+. ..++.+..++...+..+|..|+.+|..+........ ...-.+|.+..+..+.....+..|+..+..+....
T Consensus 82 ~~~~~--~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~--~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~ 157 (588)
T d1b3ua_ 82 PEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV 157 (588)
T ss_dssp GGGGG--GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred hhHHH--HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Confidence 11222 267777788888899999999999999976543221 12223555555666656677888887777776543
Q ss_pred cchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC--HHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHH
Q 012677 329 ENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH--QDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYN 404 (458)
Q Consensus 329 ~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 404 (458)
... .....++.+.+++.+. .++..++.++..++.. .+. .....++.+..++.+. +..++..|+.+|..
T Consensus 158 ~~~---~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~ 229 (588)
T d1b3ua_ 158 SSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASDE-QDSVRLLAVEACVN 229 (588)
T ss_dssp CHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTCS-CHHHHTTHHHHHHH
T ss_pred hHH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHHHHhcCC-chhhHHHHHHHHHH
Confidence 321 1233577888888877 5788899999988763 222 2234467777877754 59999999999999
Q ss_pred HhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 405 ICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 405 L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
++...+.. ... ...++.+..++.+.+..++..++..|..+....
T Consensus 230 i~~~~~~~--~~~--~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~ 273 (588)
T d1b3ua_ 230 IAQLLPQE--DLE--ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHHHSCHH--HHH--HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred hhccCCHH--HHH--HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Confidence 98765432 111 336778888888888999999999998887543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=4.9e-06 Score=74.60 Aligned_cols=226 Identities=9% Similarity=-0.018 Sum_probs=143.3
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK 248 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~ 248 (458)
...|++.|. .++.+|..|+..|..+.. ..+++.|+.++++. ++.++..|+.+|..+.......
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~----~~~vr~~a~~aL~~l~~~~~~~ 84 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICKKCE 84 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhccccccc
Confidence 456778885 668899999998876532 35689999999875 8999999999999886543322
Q ss_pred hhhhcCCCCHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccc
Q 012677 249 RLVAENPLAIPLLI-DSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCIL 327 (458)
Q Consensus 249 ~~i~~~~~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 327 (458)
.. .++.+. .+++..+..++..++.+|.++...... .....++.+...+.+.++.++..++.++..+..
T Consensus 85 ~~------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~- 153 (276)
T d1oyza_ 85 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 153 (276)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred cc------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence 22 223333 456778999999999999988764422 123456777777777888888888877765432
Q ss_pred ccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC----------------CHHHHHHH-------HhcCCHHHH
Q 012677 328 LENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS----------------HQDAIEEI-------GELGAIPCL 382 (458)
Q Consensus 328 ~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~----------------~~~~~~~i-------~~~g~i~~L 382 (458)
...++.++.++.+. ..+..+..++..+.. +...+... ....+++.|
T Consensus 154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L 224 (276)
T d1oyza_ 154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL 224 (276)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHH
Confidence 22333344444332 112222222221111 11111111 123468888
Q ss_pred HHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhC-CHHHHHHHHHHHH
Q 012677 383 LRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENG-TSRAKRKANGILE 446 (458)
Q Consensus 383 v~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~A~~~L~ 446 (458)
++.+.+ +.++..++.+|..+.. ..+++.|..++... +..++..|...|.
T Consensus 225 ~~~l~d---~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 225 CDELKK---NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp HHHHTS---SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhCC---hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 888873 4678889999988742 23678888877664 6678888887764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=0.00012 Score=69.83 Aligned_cols=273 Identities=8% Similarity=0.080 Sum_probs=167.2
Q ss_pred hhhhhHHhhcC---CcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc
Q 012677 169 HLNSLLEKMSS---SLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD 245 (458)
Q Consensus 169 ~l~~Lv~~l~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~ 245 (458)
.++.+++.+.+ +...+..++..+..+..........-.. ...++.++..+.+. +.+..++..|+.++.++....
T Consensus 128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~il~~~~~~l~~~--~~~~~v~~~a~~~l~~~~~~~ 204 (458)
T d1ibrb_ 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEFT 204 (458)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHTTTT
T ss_pred hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhH-HHHHHHHHHHhccc--ccCHHHHHHHHHHHHHHHHhh
Confidence 56667776642 2445566777777766543332221111 24567777777653 235688999999998887554
Q ss_pred hhh--hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcch-hHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 246 ENK--RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNK-LIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 246 ~~~--~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
... ...... ...+.+..++.+++.+++..++.+|..+....... .........+.+...+.+.+.+++..|+..+.
T Consensus 205 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 283 (458)
T d1ibrb_ 205 KANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 283 (458)
T ss_dssp HHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHH-HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 321 111111 25566777788889999999999999987543221 11112223344555666778888898998888
Q ss_pred Hhcccccc-----------------h----hHHHhhCcHHHHHHHhccC---------CcHHHHHHHHHHhcC-CH-HHH
Q 012677 323 SLCILLEN-----------------K----RRAVHAGAVRVILRKIMEN---------SLVDELLAILAMLSS-HQ-DAI 370 (458)
Q Consensus 323 ~L~~~~~~-----------------~----~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~La~-~~-~~~ 370 (458)
.++..... . ....-...++.+.+.+.+. .++..+..++..++. .+ ..-
T Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 363 (458)
T d1ibrb_ 284 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV 363 (458)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhh
Confidence 77543210 0 0111123445555555421 356667777777765 22 111
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc-hhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR-TRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
. ..++.+...+.++ +...++.|+.+|..++.+.. ......+ ...++.|+..+.+.++.+|..|+++|..++
T Consensus 364 ~-----~l~~~i~~~l~s~-~~~~r~aal~~l~~i~~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~ 435 (458)
T d1ibrb_ 364 P-----HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 435 (458)
T ss_dssp H-----HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred h-----HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCHhHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1 1245555666644 58999999999999986542 2222222 457788999999999999999999999998
Q ss_pred hhHh
Q 012677 450 KAAL 453 (458)
Q Consensus 450 ~~~~ 453 (458)
...+
T Consensus 436 ~~~~ 439 (458)
T d1ibrb_ 436 ELLP 439 (458)
T ss_dssp HHGG
T ss_pred HHhh
Confidence 7654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.9e-05 Score=81.93 Aligned_cols=260 Identities=10% Similarity=0.020 Sum_probs=152.3
Q ss_pred CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc--hhhhhhhcCCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD--ENKRLVAENPL 256 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~ 256 (458)
++...|..|+..+..++............ ..++.|+..+++. ++.++..|+++|..++..- .....+.. .
T Consensus 407 ~~~~~reaa~~alg~i~eg~~~~~~~~l~--~li~~l~~~l~d~----~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~--~ 478 (888)
T d1qbkb_ 407 HEWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSDK----KALVRSITCWTLSRYAHWVVSQPPDTYLK--P 478 (888)
T ss_dssp SSHHHHHHHHHHHHHHTTTSHHHHTTTHH--HHHHHHHHHTTSS----CHHHHHHHHHHHHHTHHHHHSSCHHHHTT--T
T ss_pred chhHHHHHHHHHhhhhhhhHHHHhcccch--hhhHHHHHhccCC----CHHHHHHHHHHHHHHHHHhhhhhhhhhhh--h
Confidence 45678888888998887654333222222 4678888888764 8899999999999887532 12223333 3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccc---cch
Q 012677 257 AIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILL---ENK 331 (458)
Q Consensus 257 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~---~~~ 331 (458)
+++.++..+.+++..++..|+++|.++...... .+.. ...++.|+..+.......+..+..++..++..- -++
T Consensus 479 ~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~--~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~ 556 (888)
T d1qbkb_ 479 LMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 556 (888)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT--SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCS
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccc
Confidence 788899999999999999999999999753211 1111 335566666666655555555555555443211 011
Q ss_pred hHHHhhCcHHHHHHHhc------------------------cC-------------------------------------
Q 012677 332 RRAVHAGAVRVILRKIM------------------------EN------------------------------------- 350 (458)
Q Consensus 332 ~~i~~~g~v~~Lv~ll~------------------------~~------------------------------------- 350 (458)
...++ ..++.+++... ..
T Consensus 557 ~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 635 (888)
T d1qbkb_ 557 PEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPD 635 (888)
T ss_dssp HHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCC
T ss_pred hHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 11100 01111111110 00
Q ss_pred -CcHHHHHHHHHHhcC--CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHH
Q 012677 351 -SLVDELLAILAMLSS--HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLS 427 (458)
Q Consensus 351 -~~~~~a~~~L~~La~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~ 427 (458)
+....++.++..+.. .+.....+.....++.+...+++. +..+++.|..++..|+..........+ ...++.+.
T Consensus 636 ~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~ 712 (888)
T d1qbkb_ 636 KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILG 712 (888)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHH
Confidence 112223333333322 111111222233456666677654 589999999999999876654433333 23566666
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 428 RLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 428 ~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.-+.+....++..|++++..|+.+.
T Consensus 713 ~~L~~~~~~v~~~a~~~ig~ia~~~ 737 (888)
T d1qbkb_ 713 TNLNPEFISVCNNATWAIGEISIQM 737 (888)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 6666677789999999998887654
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=4.2e-07 Score=68.14 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=33.2
Q ss_pred ccccccccccc--C-CccCCCcccccHHHHHHHHhc----CC---CCCCCCCcc
Q 012677 80 FRCPISGEIMT--D-PVVLANGQTFDRPCIQRWLDE----GN---RTCPQTRQV 123 (458)
Q Consensus 80 ~~C~ic~~~~~--~-p~~l~cgh~fc~~ci~~~~~~----~~---~~CP~c~~~ 123 (458)
..||||++.+. + +..++|||.||+.|+..|++. +. ..||.|+.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~ 59 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence 45999998875 3 445589999999999999963 22 269987643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=9.6e-05 Score=65.71 Aligned_cols=204 Identities=9% Similarity=-0.002 Sum_probs=126.4
Q ss_pred cCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc
Q 012677 209 TDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDS 288 (458)
Q Consensus 209 ~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 288 (458)
......|+.+|.+. ++.++..|+..|..+.. ...++.|+.++++++..+|..|+.+|..+.....
T Consensus 18 ~~~~~~L~~~L~d~----~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~ 82 (276)
T d1oyza_ 18 KLNDDELFRLLDDH----NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 82 (276)
T ss_dssp TSCHHHHHHHTTCS----SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred cCCHHHHHHHhcCC----CHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 35577889999975 99999999999976642 1368999999999999999999999998865433
Q ss_pred chhHhhccCchHHHHH-HhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC
Q 012677 289 NKLIIGKLGAMTPLID-LLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS 365 (458)
Q Consensus 289 ~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~ 365 (458)
.... .++.|.. ++++.++.++..|+.+|.+++....... ...++.+...+.+. .++..++.++..+.
T Consensus 83 ~~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~- 152 (276)
T d1oyza_ 83 CEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIN- 152 (276)
T ss_dssp THHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred cccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcc-
Confidence 3222 2334444 5567799999999999999876544221 24566777777766 34555555544332
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHH---------------------HhhhhhH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIM---------------------EEENANG 424 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~---------------------~~~g~~~ 424 (458)
+...++.+..++... +..++..+..++..+..........++ ....+++
T Consensus 153 ---------~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 222 (276)
T d1oyza_ 153 ---------DKATIPLLINLLKDP-NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLS 222 (276)
T ss_dssp -----------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHH
T ss_pred ---------hHHHHHHHHHhcccc-cchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHH
Confidence 223445555555432 244444444444443332221100000 0123556
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHH
Q 012677 425 TLSRLAENGTSRAKRKANGILERLN 449 (458)
Q Consensus 425 ~L~~ll~~~~~~~~~~A~~~L~~l~ 449 (458)
.|+..+.+ +.++..|+.+|..+.
T Consensus 223 ~L~~~l~d--~~vr~~a~~aL~~ig 245 (276)
T d1oyza_ 223 VLCDELKK--NTVYDDIIEAAGELG 245 (276)
T ss_dssp HHHHHHTS--SSCCHHHHHHHHHHC
T ss_pred HHHHHhCC--hHHHHHHHHHHHHcC
Confidence 66666654 346777888887765
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=8.5e-06 Score=88.79 Aligned_cols=270 Identities=12% Similarity=0.067 Sum_probs=173.8
Q ss_pred hhhhhHHhh-cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchh
Q 012677 169 HLNSLLEKM-SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDEN 247 (458)
Q Consensus 169 ~l~~Lv~~l-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~ 247 (458)
.+..|++.+ +.|++.|..|+..|.............-.. ...++.|+.+|.+. +++++..|+.+|..+...-..
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~-~~i~~~ll~~L~D~----~~~Vq~~A~k~l~~l~~~~~~ 78 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDK----NGEVQNLAVKCLGPLVSKVKE 78 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhCcH
Confidence 566788888 467889988988777654322111111111 24678888988875 899999999999988765332
Q ss_pred hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccC----cchhH--hhccCchHHHHHHhhc-CChHHHHHHHHH
Q 012677 248 KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALD----SNKLI--IGKLGAMTPLIDLLEE-GHPLAMKDVASA 320 (458)
Q Consensus 248 ~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~----~~~~~--i~~~g~i~~Lv~lL~~-~~~~~~~~a~~a 320 (458)
..+. .+++.|+..+.+++...+..+..+|..+...- .+... ..-...++.|...+.. .+..++..|+.+
T Consensus 79 --~~~~--~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~ 154 (1207)
T d1u6gc_ 79 --YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 154 (1207)
T ss_dssp --HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred --hhHH--HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 1222 26667777777778888888888887764321 11111 1112233444444433 367888999999
Q ss_pred HHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHhhcCChhHHhH
Q 012677 321 IFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIRESTCERNKEN 397 (458)
Q Consensus 321 L~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 397 (458)
|..+......-..-....+++.|+..+.++ .++..|+.+|..|+.. ++. .-...++.++..+....+...+..
T Consensus 155 l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~ 230 (1207)
T d1u6gc_ 155 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRT 230 (1207)
T ss_dssp HHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHH
Confidence 988865443211111234667777777776 5788899999999873 221 112346777777765555677778
Q ss_pred HHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 398 CAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 398 a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
++.+|..|+...+......+ ...++.+.+.+.+.++.+++.+..++..+....+
T Consensus 231 ~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 284 (1207)
T d1u6gc_ 231 YIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 284 (1207)
T ss_dssp HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcchhhHHHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence 88888888876654322222 4567888888888888999999999988876543
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=0.00051 Score=65.18 Aligned_cols=223 Identities=11% Similarity=0.098 Sum_probs=154.0
Q ss_pred CChhHHHHHHHHHHhcccCchhhhhhhcC-CCCHHHHHHHHhcC-----------------CHHHHHHHHHHHHHhhccC
Q 012677 226 TDPGLLEDLITTILNLSIHDENKRLVAEN-PLAIPLLIDSVRTG-----------------TIETRRNAAAALFSLSALD 287 (458)
Q Consensus 226 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~~i~~Lv~lL~~~-----------------~~~~~~~a~~~L~~Ls~~~ 287 (458)
.+.+.+..++..|..+...++.|..+... +..++.|+++|+.. ..+++-.++-++.-|+.+.
T Consensus 177 ~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~ 256 (477)
T d1ho8a_ 177 EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP 256 (477)
T ss_dssp TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred cccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH
Confidence 37788888888898888888888877542 23566677777531 2467888888899999877
Q ss_pred cchhHhhcc--CchHHHHHHhhcC-ChHHHHHHHHHHHHhccccc--c----hhHHHhhCcHHHHHHHhccC-----CcH
Q 012677 288 SNKLIIGKL--GAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLE--N----KRRAVHAGAVRVILRKIMEN-----SLV 353 (458)
Q Consensus 288 ~~~~~i~~~--g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~--~----~~~i~~~g~v~~Lv~ll~~~-----~~~ 353 (458)
+....+.+. +.|+.|+.+++.. ..++..-++.+|.|+..... + ...++..++++. ++.|... ++.
T Consensus 257 ~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~ 335 (477)
T d1ho8a_ 257 VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELR 335 (477)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHH
Confidence 777777664 5699999999764 77888899999999987542 2 222455666655 5555433 222
Q ss_pred HH-------HHHHHHHhcCCHH---------------HH-HHHHhcC----------CHHHHHHHHhh---------cCC
Q 012677 354 DE-------LLAILAMLSSHQD---------------AI-EEIGELG----------AIPCLLRIIRE---------STC 391 (458)
Q Consensus 354 ~~-------a~~~L~~La~~~~---------------~~-~~i~~~g----------~i~~Lv~ll~~---------~~~ 391 (458)
+. --.-+..+++.++ ++ +.|..++ .+..|+++|.. +.+
T Consensus 336 edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D 415 (477)
T d1ho8a_ 336 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE 415 (477)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCC
Confidence 11 1111122332333 33 2343332 47889999962 223
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNK 450 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~ 450 (458)
+.+..-|+.=|..++.+.|.. +.+++..|+=..+.+|+.+.++.++.+|..+++.+=.
T Consensus 416 ~~~lAVAc~DiGefvr~~P~g-r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 416 KIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cceeehhhhhHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 566667777788899877754 6888889999999999999999999999999987654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=0.00061 Score=70.17 Aligned_cols=258 Identities=11% Similarity=-0.003 Sum_probs=161.3
Q ss_pred cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh--hh----h
Q 012677 178 SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK--RL----V 251 (458)
Q Consensus 178 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~--~~----i 251 (458)
+.|...|..|-..|..+...++ .+.+..|...+.+. ..+..++..|+-.|.|........ .. .
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~--~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~ 84 (861)
T d2bpta1 16 SPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDE--NTKLEGRILAALTLKNELVSKDSVKTQQFAQRW 84 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCT--TSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence 6789999999999988876532 35567777777653 235677888888888765432210 00 0
Q ss_pred ---hcC---CCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcC-ChHHHHHHHHHHHH
Q 012677 252 ---AEN---PLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEG-HPLAMKDVASAIFS 323 (458)
Q Consensus 252 ---~~~---~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ 323 (458)
... ..+...++..+.+++..+|..++.++..++..+-.. .+ ...++.|+..+.+. +...+..|+.+|..
T Consensus 85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~---~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~ 161 (861)
T d2bpta1 85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH---GAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG---TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCc---CchHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 000 012345677788889999999999999987643111 01 34678888888765 45677888999999
Q ss_pred hcccccchhH-HHh--hCcHHHHHHHhccC----CcHHHHHHHHHHhcC-CHHHHH-HHHhcCCHHHHHHHHhhcCChhH
Q 012677 324 LCILLENKRR-AVH--AGAVRVILRKIMEN----SLVDELLAILAMLSS-HQDAIE-EIGELGAIPCLLRIIRESTCERN 394 (458)
Q Consensus 324 L~~~~~~~~~-i~~--~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~ 394 (458)
++..-..... +.. ...+..+++.+.+. .++..++.++.++.. .+.+-. .......++.|...+.+. ++.+
T Consensus 162 i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 240 (861)
T d2bpta1 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEV 240 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC-CHHH
Confidence 8754432221 111 13444555555433 467788888888776 332211 111222456677777754 5999
Q ss_pred HhHHHHHHHHHhccCchhHHHHHHhhhhhHH-HHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 395 KENCAAILYNICFTDRTRTREIMEEENANGT-LSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 395 ~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~-L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+..++.+|..++...+......+. ..+.. +.....+.++.++..+...+..++...
T Consensus 241 ~~~~~~~l~~i~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~ 297 (861)
T d2bpta1 241 QAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 999999999998765544333332 12222 333345567889999988888777543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.57 E-value=7.7e-05 Score=57.03 Aligned_cols=88 Identities=24% Similarity=0.149 Sum_probs=73.8
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN 289 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 289 (458)
.+++.|+..|.+. +..++..|+.+|.++.. .+.++.|+.+|+++++.+|..|+.+|..+
T Consensus 22 ~~~~~L~~~l~d~----~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i------ 80 (111)
T d1te4a_ 22 EAFEPLLESLSNE----DWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI------ 80 (111)
T ss_dssp TTHHHHHHGGGCS----CHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHh------
Confidence 5688899999874 88999999999976542 13688899999999999999999999876
Q ss_pred hhHhhccCchHHHHHHhhcCChHHHHHHHHHHH
Q 012677 290 KLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIF 322 (458)
Q Consensus 290 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 322 (458)
+..++++.|..+++++++.++..|+.+|.
T Consensus 81 ----~~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 81 ----GGERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ----CSHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----CccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33567889999999999999999998874
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0022 Score=67.04 Aligned_cols=218 Identities=11% Similarity=0.033 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHhcccCc-hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHH
Q 012677 227 DPGLLEDLITTILNLSIHD-ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDL 305 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 305 (458)
+.+....++..+..+...- ..-..++.....++.+...++..+.+++..|..++..++..-...-.-.-...++.|+.-
T Consensus 635 ~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~ 714 (888)
T d1qbkb_ 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTN 714 (888)
T ss_dssp CTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566666666666665321 122233333347888889999999999999999999887643221111112357777777
Q ss_pred hhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcC-CHHHHHHHHhcCCHH
Q 012677 306 LEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSS-HQDAIEEIGELGAIP 380 (458)
Q Consensus 306 L~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~ 380 (458)
|+++...++.+|++++..|+..-.....-.=..+++.|+.++.++ .+.+.++.+|+.|+. +|+.-...+ ...++
T Consensus 715 L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l-~~~~~ 793 (888)
T d1qbkb_ 715 LNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML-QQFIR 793 (888)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG-GGTHH
T ss_pred hCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH-HHHHH
Confidence 777788999999999999986543221112236888999999876 367889999999977 665332222 23678
Q ss_pred HHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhh---CCHHHHHHHHHHHHHHHhh
Q 012677 381 CLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAEN---GTSRAKRKANGILERLNKA 451 (458)
Q Consensus 381 ~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~---~~~~~~~~A~~~L~~l~~~ 451 (458)
.++..|....+..-++.|..-++.+...++... + ..+..++..+.+ ..++++.....+|..+...
T Consensus 794 ~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~---~---~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 861 (888)
T d1qbkb_ 794 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV---I---QDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQ 861 (888)
T ss_dssp HHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGT---G---GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHH---H---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 888888865567778899999999888776432 1 223334444433 3677889899998877654
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.45 E-value=0.00014 Score=55.41 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=79.1
Q ss_pred ChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHh
Q 012677 227 DPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLL 306 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL 306 (458)
++.++..|+.+|..+. . ..++.|+..|.+++..+|..|+.+|.++. ..++++.|+.+|
T Consensus 5 ~~~VR~~A~~aL~~~~-----------~-~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l 62 (111)
T d1te4a_ 5 NKWVRRDVSTALSRMG-----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLL 62 (111)
T ss_dssp CCCSSSSCCSSTTSCS-----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-----------H-HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhh
Confidence 5666666666665432 1 26788999999999999999999987552 345789999999
Q ss_pred hcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC--CcHHHHHHHH
Q 012677 307 EEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN--SLVDELLAIL 360 (458)
Q Consensus 307 ~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L 360 (458)
++.++.++..|+.+|..+. ..++++.|..++.++ .++..|+.+|
T Consensus 63 ~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999998873 245788888999877 4677777665
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=0.0063 Score=57.53 Aligned_cols=231 Identities=13% Similarity=0.115 Sum_probs=145.0
Q ss_pred CChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhh----hhhhcCCC-CHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 012677 210 DAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENK----RLVAENPL-AIPLLIDSVRTGTIETRRNAAAALFSLS 284 (458)
Q Consensus 210 g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~----~~i~~~~~-~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 284 (458)
.++..++++|+.. ...++....+..+-.|-.+++.+ ..+.+... .-+.+..++.+++.-....+...+..++
T Consensus 74 ~~~~~~l~lL~~~---sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~ 150 (477)
T d1ho8a_ 74 KTLIPLIHLLSTS---DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 150 (477)
T ss_dssp TTHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc---CcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3577888888764 35566666666665554443322 12222211 1223444454445555666667777776
Q ss_pred ccCcchhHhhc--cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHh--hCcHHHHHHHhcc-----------
Q 012677 285 ALDSNKLIIGK--LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVH--AGAVRVILRKIME----------- 349 (458)
Q Consensus 285 ~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~--~g~v~~Lv~ll~~----------- 349 (458)
..........+ ......+-.+...++...+..|+..|..|...++.|..+.. ...+++|++.|..
T Consensus 151 ~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~ 230 (477)
T d1ho8a_ 151 QNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 230 (477)
T ss_dssp STTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred hccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhh
Confidence 65433222221 11222333343456777888888999999999999988754 4567777777752
Q ss_pred -----C---CcHHHHHHHHHHhcCCHHHHHHHHhcC--CHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchh----HHH
Q 012677 350 -----N---SLVDELLAILAMLSSHQDAIEEIGELG--AIPCLLRIIRESTCERNKENCAAILYNICFTDRTR----TRE 415 (458)
Q Consensus 350 -----~---~~~~~a~~~L~~La~~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~----~~~ 415 (458)
+ .++..++-+++-|+.+++....+.+.+ .|+.|+++++.+.-+++.+-++++|.|+....... ...
T Consensus 231 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~ 310 (477)
T d1ho8a_ 231 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 310 (477)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 1 347789999999999999999998764 49999999987766999999999999999764321 122
Q ss_pred HHHhhhhhHHHHHHhhhC--CHHHHHHHHH
Q 012677 416 IMEEENANGTLSRLAENG--TSRAKRKANG 443 (458)
Q Consensus 416 ~~~~~g~~~~L~~ll~~~--~~~~~~~A~~ 443 (458)
++...++.+.+..|.... ++++.+--..
T Consensus 311 ~~v~~~~l~~l~~L~~r~~~Dedl~edl~~ 340 (477)
T d1ho8a_ 311 LLLLGNALPTVQSLSERKYSDEELRQDISN 340 (477)
T ss_dssp HHHHHCHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCHHHHHHHHH
Confidence 333355565555554442 5555444333
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0012 Score=62.36 Aligned_cols=261 Identities=9% Similarity=-0.014 Sum_probs=154.5
Q ss_pred hhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC-chh-hhhhhc
Q 012677 176 KMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH-DEN-KRLVAE 253 (458)
Q Consensus 176 ~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~-~~~-~~~i~~ 253 (458)
.++.|.+.|.+|-..|..+...++ .+.+..|...+.+. ..+..++..|+-.|.|.-.. ... ......
T Consensus 9 ~~s~d~~~r~~A~~~L~~~~~~~~---------~~~~~~l~~il~~~--~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 9 TVSPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 336788999999999988876432 34566666666543 12456777777777765432 211 111000
Q ss_pred ---------CCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcC--ChHHHHHHHHHHH
Q 012677 254 ---------NPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEG--HPLAMKDVASAIF 322 (458)
Q Consensus 254 ---------~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~ 322 (458)
...+...++..+.+.+. .+..++.++..++..+.... .-.+.++.|+..+.++ +...+..++.++.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 154 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETY-RPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIG 154 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCS-SSCSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcH-HHHHHHHHHHHHHHHhCCcc--cCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 00133445566555543 33345555555544321110 1146788999988764 5567788888888
Q ss_pred Hhccccc-chhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCC-HHHH-HHHHhcCCHHHHHHHHhhcCChhHH
Q 012677 323 SLCILLE-NKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSSH-QDAI-EEIGELGAIPCLLRIIRESTCERNK 395 (458)
Q Consensus 323 ~L~~~~~-~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~ 395 (458)
.++.... ....-.-...++.+++.+.+. .++..++.++..+... ...- .........+.+..++.+ .+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 233 (458)
T d1ibrb_ 155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-PDTRVR 233 (458)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-SSHHHH
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcC-CCHHHH
Confidence 8875433 222222245677888888654 4678888888888773 2221 112222235556666664 458999
Q ss_pred hHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 396 ENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 396 ~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
..++.+|..++...+......+. ......+.....+..+.++..|...+..+++..
T Consensus 234 ~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~ 289 (458)
T d1ibrb_ 234 VAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 289 (458)
T ss_dssp HHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999998766543222111 223344455566778888899998888887654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.039 Score=56.29 Aligned_cols=270 Identities=10% Similarity=0.073 Sum_probs=160.7
Q ss_pred hhhhhHHhhc-CC--cHHHHHHHHHHHHHHhhCchhh-hhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccC
Q 012677 169 HLNSLLEKMS-SS--LSDQKEAAKELRLLTKRMPLFR-ALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIH 244 (458)
Q Consensus 169 ~l~~Lv~~l~-~~--~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~ 244 (458)
.++.|++.+. ++ ...+..++..|..++..-.... .... ...++.++..+.+. +.+..++..|+.++.++...
T Consensus 129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~--~~il~~i~~~l~~~--~~~~~v~~~a~~~l~~~~~~ 204 (876)
T d1qgra_ 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKE--EPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTT--CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHH--HHHHHHHHHHHcCc--CccHHHHHHHHHHHHHHHHH
Confidence 5777877773 22 4456678888888876432211 1111 24577777777653 23567888888888776543
Q ss_pred chh---hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-hhHhhccCchHHHHHHhhcCChHHHHHHHHH
Q 012677 245 DEN---KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-KLIIGKLGAMTPLIDLLEEGHPLAMKDVASA 320 (458)
Q Consensus 245 ~~~---~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 320 (458)
... ...+.. .+++.+...+.+++.+++..++..|..+...... -.........+.+...+.+...+++..+...
T Consensus 205 ~~~~~~~~~~~~--~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (876)
T d1qgra_ 205 TKANFDKESERH--FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp CHHHHTSHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hhhhhhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 321 111111 1455566777888999999999999998764322 1222223344555566667777888887777
Q ss_pred HHHhcccccc---------------------hhHHHhhCcHHHHHHHhccC---------CcHHHHHHHHHHhcCCHHHH
Q 012677 321 IFSLCILLEN---------------------KRRAVHAGAVRVILRKIMEN---------SLVDELLAILAMLSSHQDAI 370 (458)
Q Consensus 321 L~~L~~~~~~---------------------~~~i~~~g~v~~Lv~ll~~~---------~~~~~a~~~L~~La~~~~~~ 370 (458)
+..++..... -........++.+...+... .++..+..+|..++...
T Consensus 283 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~--- 359 (876)
T d1qgra_ 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--- 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh---
Confidence 6666542210 01111123444444444321 35566666666665421
Q ss_pred HHHHhcCCHHHHHHHHhh---cCChhHHhHHHHHHHHHhccCchh-HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHH
Q 012677 371 EEIGELGAIPCLLRIIRE---STCERNKENCAAILYNICFTDRTR-TREIMEEENANGTLSRLAENGTSRAKRKANGILE 446 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~ 446 (458)
....++.++.++.. +.+...++.++.++..+....... ....+ ...++.+...+.+.++.++..|.+++.
T Consensus 360 ----~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T d1qgra_ 360 ----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp ----GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ----hhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 11234444444431 345788888888888887654322 22222 346778888888899999999999999
Q ss_pred HHHhhHh
Q 012677 447 RLNKAAL 453 (458)
Q Consensus 447 ~l~~~~~ 453 (458)
.+++.-+
T Consensus 434 ~~~~~~~ 440 (876)
T d1qgra_ 434 RICELLP 440 (876)
T ss_dssp HHHHHCG
T ss_pred HHHHHcc
Confidence 9987643
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0035 Score=67.45 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=163.3
Q ss_pred hhhhHHhhc-CCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCch-h
Q 012677 170 LNSLLEKMS-SSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDE-N 247 (458)
Q Consensus 170 l~~Lv~~l~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~-~ 247 (458)
++.+.+.+. .+...+..++..+..+....+..-..... ..++.++..+... .....++..++..+..+..... .
T Consensus 433 ~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~--~~~~~~~~~al~~l~~l~~~~~~~ 508 (1207)
T d1u6gc_ 433 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDK--SSSSNLKIDALSCLYVILCNHSPQ 508 (1207)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCS--SSCHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHhccHH
Confidence 344445553 45677888888888877654432211111 2455666666543 1245677788888877664432 2
Q ss_pred -hhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-------cCchHHHHHHhhc--CChHHHHHH
Q 012677 248 -KRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-------LGAMTPLIDLLEE--GHPLAMKDV 317 (458)
Q Consensus 248 -~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~lL~~--~~~~~~~~a 317 (458)
-..... ...+.++..+......++..+..++..+...-........ ...++.++..+.. .+.+++..|
T Consensus 509 ~~~~~~~--~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~a 586 (1207)
T d1u6gc_ 509 VFHPHVQ--ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERA 586 (1207)
T ss_dssp GGHHHHT--TTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHH
T ss_pred HHHHHHH--hhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 222222 3788888888888888888888887776542111000000 1134444444543 367889999
Q ss_pred HHHHHHhcccccchhHHHhhCcHHHHHHHhccCCcHHHHHHHHHHhcCCH---HHHHHHHhcCCHHHHHHHHhhcCChhH
Q 012677 318 ASAIFSLCILLENKRRAVHAGAVRVILRKIMENSLVDELLAILAMLSSHQ---DAIEEIGELGAIPCLLRIIRESTCERN 394 (458)
Q Consensus 318 ~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~~~a~~~L~~La~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~ 394 (458)
+.++..+.........-.-...++.++..+.++..+..++.++..++... .....+ . ..++.|...+... +..+
T Consensus 587 l~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~-~~~~~l~~~l~~~-~~~~ 663 (1207)
T d1u6gc_ 587 ISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVL-G-EGVPILASFLRKN-QRAL 663 (1207)
T ss_dssp HHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHH-H-HHHHHHHHHTTSC-CHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHH-H-HHHHHHHHhcccc-hHHH
Confidence 99888876533221111123466777777777777788888888887632 122222 1 2367778888754 5899
Q ss_pred HhHHHHHHHHHhccCchh-HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhHh
Q 012677 395 KENCAAILYNICFTDRTR-TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAAL 453 (458)
Q Consensus 395 ~~~a~~~L~~L~~~~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~ 453 (458)
+..++.+|..+....... ....+ ...++.+..++.+.+..++..+..+|..+.+..+
T Consensus 664 r~~al~~L~~l~~~~~~~~~~~~~--~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~ 721 (1207)
T d1u6gc_ 664 KLGTLSALDILIKNYSDSLTAAMI--DAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 721 (1207)
T ss_dssp HHHHHHHHHHHHHHCCTTCCHHHH--HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHhccccchhHHH--hhHHHhhccccccccHHHHHHHHHHHHHHHhhcc
Confidence 999999999987654322 11222 2234444555666677888888888888876543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0025 Score=65.60 Aligned_cols=260 Identities=9% Similarity=-0.008 Sum_probs=159.0
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc-hhh-hh-
Q 012677 174 LEKMSSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD-ENK-RL- 250 (458)
Q Consensus 174 v~~l~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~-~~~-~~- 250 (458)
-..+++|.+.|..|-..|..+...++ .|.+..|++.+.+. +.+..++..|+-.|.|.-... ... ..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~~---------~~f~~~L~~i~~~~--~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 8 EKTVSPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhcCh---------hHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 33446788899999999988776432 35677777777553 235678888888888754321 110 00
Q ss_pred ---------hhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcC--ChHHHHHHH
Q 012677 251 ---------VAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEG--HPLAMKDVA 318 (458)
Q Consensus 251 ---------i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~~~~a~ 318 (458)
-... .+...++..+.+++ ..+..++.++..++..+-. ..+ .+.++.|++.+.++ +...+..++
T Consensus 77 ~~~~~~i~~~~k~-~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p---~~~Wpeli~~L~~~l~~~~~~~~~~~~~l 151 (876)
T d1qgra_ 77 QQRWLAIDANARR-EVKNYVLHTLGTET-YRPSSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKESTL 151 (876)
T ss_dssp HHHHHTSCHHHHH-HHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hcccccCCHHHHH-HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCC---ccccHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 0011 13345677777665 3455677788877754311 112 46899999988765 456788899
Q ss_pred HHHHHhcccccchh-HHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcC-CHHHHH-HHHhcCCHHHHHHHHhhcCC
Q 012677 319 SAIFSLCILLENKR-RAVHAGAVRVILRKIMEN----SLVDELLAILAMLSS-HQDAIE-EIGELGAIPCLLRIIRESTC 391 (458)
Q Consensus 319 ~aL~~L~~~~~~~~-~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~-~~~~~~-~i~~~g~i~~Lv~ll~~~~~ 391 (458)
.+|..++..-.... .-.-...++.+++.+.+. .++..++.++.+... ....-. .....-.++.+...+.+ .+
T Consensus 152 ~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~ 230 (876)
T d1qgra_ 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-PD 230 (876)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC-SS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC-CC
Confidence 99999875332111 111135778888888654 366778888777655 222110 11111124555666664 45
Q ss_pred hhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 392 ERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 392 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
++++..++.+|..+....+......+. ......+.....+..+.+...+...+..++..
T Consensus 231 ~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 289 (876)
T d1qgra_ 231 TRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 899999999999999876654333332 23344455556667778888888777777653
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.0064 Score=62.16 Aligned_cols=262 Identities=10% Similarity=0.093 Sum_probs=147.9
Q ss_pred CCcHHHHHHHHHHHHHHhhCchh-hhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCC
Q 012677 179 SSLSDQKEAAKELRLLTKRMPLF-RALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHDENKRLVAENPLA 257 (458)
Q Consensus 179 ~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~ 257 (458)
.+...+..++..+..+....... ...... ..++.++..+.+. ++.++..+++++..++..-. ..+... ..
T Consensus 381 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~--~~l~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~--~~~~~~-~~ 451 (861)
T d2bpta1 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQ----SLQVKETTAWCIGRIADSVA--ESIDPQ-QH 451 (861)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHG--GGSCTT-TT
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHH--HHHHHHHHHhcCc----chhhhhHHHHHHHHHHHHhc--hhhhhH-Hh
Confidence 34556667777777666543322 222222 4678888888764 78999999999988875422 111122 24
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHhhccC--cchhHhhc--cCchHHHHHHhhc--CChHHHHHHHHHHHHhcccc
Q 012677 258 IPLLIDSVR---TGTIETRRNAAAALFSLSALD--SNKLIIGK--LGAMTPLIDLLEE--GHPLAMKDVASAIFSLCILL 328 (458)
Q Consensus 258 i~~Lv~lL~---~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~--~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~ 328 (458)
++.++..+. ..+..++..+++++..+...- .....+.. ...+..|+..... .+..++..+..++..+....
T Consensus 452 ~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~ 531 (861)
T d2bpta1 452 LPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 444444332 346778888888887775421 11222211 2345555655543 35567888888888876544
Q ss_pred cchhHHHh----hCcHHHHHHHhccC--C-----------cHHHHHHHHHHhcC-CHHHHHHHHhcCCHHHHHHHHhhcC
Q 012677 329 ENKRRAVH----AGAVRVILRKIMEN--S-----------LVDELLAILAMLSS-HQDAIEEIGELGAIPCLLRIIREST 390 (458)
Q Consensus 329 ~~~~~i~~----~g~v~~Lv~ll~~~--~-----------~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~ll~~~~ 390 (458)
.....-.- ....+.|...+... . ++..+..++..+.. .+..-..+. ...+..++..+...+
T Consensus 532 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~ 610 (861)
T d2bpta1 532 TDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKD 610 (861)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcccCC
Confidence 32222111 12233333333221 0 11222222332221 111100000 113555666676555
Q ss_pred ChhHHhHHHHHHHHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 391 CERNKENCAAILYNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 391 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
+..+++.++.++..++...+......+ ...++.|...+.+.++.++..|..++..+++..
T Consensus 611 ~~~v~~~~l~~l~~l~~~~~~~~~~~l--~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~ 670 (861)
T d2bpta1 611 SAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp GGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHH--HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 677899999999999876555544444 357788888888888899999999998888754
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.46 E-value=0.0043 Score=53.58 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=15.6
Q ss_pred ChHHHhhccCCCCCCCChhHHHHHHHH
Q 012677 211 AIPLLLSPLSPGRADTDPGLLEDLITT 237 (458)
Q Consensus 211 ~i~~Lv~lL~~~~~~~~~~~~~~a~~~ 237 (458)
.+..|..+++.. ++.++..|+..
T Consensus 67 ~~~~L~~Ll~D~----d~~VR~~AA~~ 89 (233)
T d1lrva_ 67 PVEALTPLIRDS----DEVVRRAVAYR 89 (233)
T ss_dssp CGGGGGGGTTCS----SHHHHHHHHTT
T ss_pred CHHHHHHHhcCC----CHHHHHHHHHH
Confidence 356677777764 77887777643
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.85 Score=40.06 Aligned_cols=194 Identities=8% Similarity=0.040 Sum_probs=144.1
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcc-h----hHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhccccc
Q 012677 256 LAIPLLIDSVRTGTIETRRNAAAALFSLSALDSN-K----LIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE 329 (458)
Q Consensus 256 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~----~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~ 329 (458)
+.+..|+..|..=+.+.|..++.+..++-....+ + +.+.. ...+..|+.-- +++++...+-..|.....++.
T Consensus 69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e~ 146 (330)
T d1upka_ 69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP 146 (330)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhHH
Confidence 3788888888888999999999999998765422 2 22333 33333333332 266777778888888888888
Q ss_pred chhHHHhhCcHHHHHHHhccC--CcHHHHHHHHHHhcC-CHHHHHHHHhcC---CHHHHHHHHhhcCChhHHhHHHHHHH
Q 012677 330 NKRRAVHAGAVRVILRKIMEN--SLVDELLAILAMLSS-HQDAIEEIGELG---AIPCLLRIIRESTCERNKENCAAILY 403 (458)
Q Consensus 330 ~~~~i~~~g~v~~Lv~ll~~~--~~~~~a~~~L~~La~-~~~~~~~i~~~g---~i~~Lv~ll~~~~~~~~~~~a~~~L~ 403 (458)
-...+.....+..+.+.+..+ ++...|..++..|-. ++.....++..+ ....+-.+|.+ ++--++.+++..|.
T Consensus 147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s-~NYVtrRqSlKLLg 225 (330)
T d1upka_ 147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 888888888899999999877 788889999998755 887777777766 36666778874 56999999999999
Q ss_pred HHhccCchh--HHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhhH
Q 012677 404 NICFTDRTR--TREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKAA 452 (458)
Q Consensus 404 ~L~~~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~~ 452 (458)
.|-....+. +.+.+.+..-+..+..|+.+.+..++-.|=.+.+.+-..+
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp 276 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 276 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence 998765543 2233444556677888889999999988888877665443
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.29 E-value=0.0077 Score=51.93 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=30.7
Q ss_pred CHHHHHHHHhhcCChhHHhHHHHHH-----HHHhccCchhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHH
Q 012677 378 AIPCLLRIIRESTCERNKENCAAIL-----YNICFTDRTRTREIMEEENANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 378 ~i~~Lv~ll~~~~~~~~~~~a~~~L-----~~L~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
+.+.|..++++. ++.++..++..| ..+.......++..+.+. ..+.++..+.+.++.+++.|+.
T Consensus 163 ~~~~L~~l~~D~-d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 163 PEESLGLMTQDP-EPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp CGGGGGGSTTCS-SHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred CHHHHHHHccCC-CHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHHH
Confidence 344455555543 355555555432 223332222232222222 2344556667778888887753
|
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.20 E-value=0.036 Score=38.08 Aligned_cols=49 Identities=29% Similarity=0.461 Sum_probs=38.7
Q ss_pred Ccccccccccccc-----CCccC--CCcccccHHHHHHHHhcCCCCCCCCCccCCC
Q 012677 78 YEFRCPISGEIMT-----DPVVL--ANGQTFDRPCIQRWLDEGNRTCPQTRQVLSH 126 (458)
Q Consensus 78 ~~~~C~ic~~~~~-----~p~~l--~cgh~fc~~ci~~~~~~~~~~CP~c~~~l~~ 126 (458)
..-.|-||.+..- +|.+- .|+.-.|+.|++-=.+.++..||.|+.+...
T Consensus 15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence 3457999998653 34433 5899999999988888899999999988754
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=1 Score=39.47 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=122.8
Q ss_pred HhhccCchHHHHHHhhcCChHHHHHHHHHHHHhccccc-chhH----HHh-hCcHHHHHHHhccCCcHHHHHHHHHHhcC
Q 012677 292 IIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLE-NKRR----AVH-AGAVRVILRKIMENSLVDELLAILAMLSS 365 (458)
Q Consensus 292 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~----i~~-~g~v~~Lv~ll~~~~~~~~a~~~L~~La~ 365 (458)
.+...+.+..|+..|..-+-+.++.++.+..++-.... .+.. +.. ..++..|+..-.++++.-.+-..|.....
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik 143 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 143 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHh
Confidence 34556788889998888899999999999999977553 3322 332 25666666665666888889999999999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCchhHHHHHHhh--hhhHHHHHHhhhCCHHHHHHHHH
Q 012677 366 HQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRTRTREIMEEE--NANGTLSRLAENGTSRAKRKANG 443 (458)
Q Consensus 366 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~--g~~~~L~~ll~~~~~~~~~~A~~ 443 (458)
++...+.++....+..+.++++.+ +-++...|..++..|-..........+... -+....-.|+.+++.-+++++..
T Consensus 144 ~e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK 222 (330)
T d1upka_ 144 HEPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 222 (330)
T ss_dssp SHHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 999999999998899999999965 499999999999998887765455555432 35556677889999999999999
Q ss_pred HHHHHH
Q 012677 444 ILERLN 449 (458)
Q Consensus 444 ~L~~l~ 449 (458)
+|..+-
T Consensus 223 LLgelL 228 (330)
T d1upka_ 223 LLGELL 228 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.77 E-value=0.012 Score=41.07 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=48.6
Q ss_pred CCCCCCCCccCCCCCCccc-H-HHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN-H-LVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n-~-~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
.+.||.|...+..+...+. + ..+..|.+|...++..+|.+........+.||. .|+.+|+.|
T Consensus 8 ~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~--~L~~~I~~~ 71 (78)
T d1t1ha_ 8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY--VLKSLIALW 71 (78)
T ss_dssp SSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT--TTHHHHHHH
T ss_pred cCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchH--HHHHHHHHH
Confidence 4689999999987754443 3 248889999988888899888887777777764 888998887
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.018 Score=42.20 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=48.0
Q ss_pred CCCCCCCCccCCCCCCccc--H-HHHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIPN--H-LVREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~n--~-~l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
.+.||.|...+..+.+.++ + .-+..|.+|..+++ .+|.+.+++....+.||. .++..|+.|
T Consensus 22 ~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~-~~P~~~~~l~~~~L~pN~--~Lr~~I~~~ 85 (98)
T d1wgma_ 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNT--ELKEKIQRW 85 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTTTSEECH--HHHHHHHHH
T ss_pred HhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcC-CcccccccccchhhcchH--HHHHHHHHH
Confidence 4689999999998866553 3 34899999997644 689888888877788775 788888877
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.03 E-value=0.031 Score=39.09 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=47.7
Q ss_pred CCCCCCCCccCCCCCCcc-cHH-HHHHHHHHHHHhCCCCCCCCCCCCCcccchhhhhhhhhhHHhh
Q 012677 114 NRTCPQTRQVLSHTVLIP-NHL-VREMISQWCKEHGIELPKPIKDTDEDVVTDASRSHLNSLLEKM 177 (458)
Q Consensus 114 ~~~CP~c~~~l~~~~~~~-n~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Lv~~l 177 (458)
...||.|...+..+...+ .+. -+..|.+|..+++..+|.+...+....+.|| ..++.+|+.+
T Consensus 7 ~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN--~~L~~~I~~~ 70 (80)
T d2c2la2 7 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN--LAMKEVIDAF 70 (80)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC--HHHHHHHHHH
T ss_pred cccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccH--HHHHHHHHHH
Confidence 458999999998775544 333 4778889998888889988887777677776 4788888876
|
| >d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: Protein c14orf4 (KIAA1865) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.11 Score=34.12 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=28.7
Q ss_pred CccccccccccccCCccCCC----cccccHHHHHHHHhc
Q 012677 78 YEFRCPISGEIMTDPVVLAN----GQTFDRPCIQRWLDE 112 (458)
Q Consensus 78 ~~~~C~ic~~~~~~p~~l~c----gh~fc~~ci~~~~~~ 112 (458)
..+.|.+|.+-++|--.+.| +|.||-.|-..+++.
T Consensus 7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~ 45 (80)
T d2cs3a1 7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 45 (80)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHh
Confidence 34789999999999765543 799999999998874
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.55 E-value=2.2 Score=38.15 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=100.0
Q ss_pred hhhhhhhhccCChHHHhhccCC----C---CCCCChhHHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHhcCCHHH
Q 012677 200 LFRALFGESTDAIPLLLSPLSP----G---RADTDPGLLEDLITTILNLSIHDENKRLVAENPLAIPLLIDSVRTGTIET 272 (458)
Q Consensus 200 ~~~~~i~~~~g~i~~Lv~lL~~----~---~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~~i~~Lv~lL~~~~~~~ 272 (458)
..-..+ . .+|+..|+.+|.. + ....+...+...+.+|..+.........+.....++..|+..|.++...+
T Consensus 37 sWv~~F-~-~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~t 114 (343)
T d2bnxa1 37 SWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 114 (343)
T ss_dssp HHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred hHHHHH-H-hccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHH
Confidence 344445 4 4677777777631 1 11123556778889999998888888888888889999999999999999
Q ss_pred HHHHHHHHHHhhccCc---ch----------hHhhccCchHHHHHHhhcC-ChHHHHHHHHHHHHhcccccc-------h
Q 012677 273 RRNAAAALFSLSALDS---NK----------LIIGKLGAMTPLIDLLEEG-HPLAMKDVASAIFSLCILLEN-------K 331 (458)
Q Consensus 273 ~~~a~~~L~~Ls~~~~---~~----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~~~-------~ 331 (458)
+..|..+|..++...+ +. ....+.+-+.+++..|+++ +.+.+..++..+-.|....++ |
T Consensus 115 r~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR 194 (343)
T d2bnxa1 115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 194 (343)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 9999999999986431 11 1233456788899888775 566777677666666655442 2
Q ss_pred hHHHhhCcHHHHHHHhcc
Q 012677 332 RRAVHAGAVRVILRKIME 349 (458)
Q Consensus 332 ~~i~~~g~v~~Lv~ll~~ 349 (458)
..+..+|..+ +++-|+.
T Consensus 195 ~E~~~~Gl~~-il~~l~~ 211 (343)
T d2bnxa1 195 SELMRLGLHQ-VLQELRE 211 (343)
T ss_dssp HHHHHTTHHH-HHHHHTT
T ss_pred HHHHHCChHH-HHHHHHc
Confidence 2355556554 4555553
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=88.30 E-value=5 Score=35.47 Aligned_cols=156 Identities=11% Similarity=0.020 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHHHhccc----Cchhh-hhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhccCchHH
Q 012677 227 DPGLLEDLITTILNLSI----HDENK-RLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGKLGAMTP 301 (458)
Q Consensus 227 ~~~~~~~a~~~L~~ls~----~~~~~-~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~ 301 (458)
++.+...+.-+++++.. +.+.. ..++. .+...+...+..++.+-+..+..+|+|+-. .+.++.
T Consensus 140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~ 207 (336)
T d1lsha1 140 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQ--PLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKK 207 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCcHHHHH--HHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHH
Confidence 45555666666665542 11111 11111 122333344556677777777888888742 345777
Q ss_pred HHHHhhcC-------ChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhccC----CcHHHHHHHHHHhcCCHHHH
Q 012677 302 LIDLLEEG-------HPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIMEN----SLVDELLAILAMLSSHQDAI 370 (458)
Q Consensus 302 Lv~lL~~~-------~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~~~----~~~~~a~~~L~~La~~~~~~ 370 (458)
|..++... +..++..|+++|.+++...... +.+.+..++.+. +++-.|..+|.. ..|..
T Consensus 208 l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~~- 277 (336)
T d1lsha1 208 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPSV- 277 (336)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCCH-
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCCH-
Confidence 77777532 4678999999999987654321 234455555544 344445544433 22211
Q ss_pred HHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCc
Q 012677 371 EEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDR 410 (458)
Q Consensus 371 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~ 410 (458)
..+..+...+....+..+.......|.+++....
T Consensus 278 ------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~ 311 (336)
T d1lsha1 278 ------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 311 (336)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred ------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence 1256667777766678888888889999987554
|
| >d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: variant PHD-like domain domain: Hypothetical protein KIAA1045 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.32 Score=33.10 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=26.7
Q ss_pred CCCCccccccccccccCCccCC---CcccccHHHHHHH
Q 012677 75 GLPYEFRCPISGEIMTDPVVLA---NGQTFDRPCIQRW 109 (458)
Q Consensus 75 ~~~~~~~C~ic~~~~~~p~~l~---cgh~fc~~ci~~~ 109 (458)
.++.+-.|+|| +.+.--..+| |+..||..|+.+-
T Consensus 11 ~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~ 47 (89)
T d1wila_ 11 PVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence 36677889999 6666555555 7899999999986
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.89 E-value=1.3 Score=45.00 Aligned_cols=135 Identities=15% Similarity=0.075 Sum_probs=92.2
Q ss_pred hhhhHHhh--cCCcHHHHHHHHHHHHHHhhCchhhhhhhhccCChHHHhhccCCCCCCCChhHHHHHHHHHHhcccCc--
Q 012677 170 LNSLLEKM--SSSLSDQKEAAKELRLLTKRMPLFRALFGESTDAIPLLLSPLSPGRADTDPGLLEDLITTILNLSIHD-- 245 (458)
Q Consensus 170 l~~Lv~~l--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~a~~~L~~ls~~~-- 245 (458)
++.+.+.| +.+++.|+.|=..|..+... .|.+..|+..+.+. +.+..++..|+-.|.|.....
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-----------p~f~~~L~~i~~~~--~~~~~iR~~A~i~lKn~i~~~W~ 70 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQLETQ-----------DGFGLTLLHVIAST--NLPLSTRLAGALFFKNFIKRKWV 70 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-----------TTHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhcc
Confidence 33444444 34577888888888877653 57777888887654 224567777777777654211
Q ss_pred ----------hhhhhhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHH
Q 012677 246 ----------ENKRLVAENPLAIPLLIDSVRTGTIETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAM 314 (458)
Q Consensus 246 ----------~~~~~i~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 314 (458)
+.|.. +-..|+..|.+++..++...+.++..++..+-. .+ .+.++.|++.++++++..+
T Consensus 71 ~~~~~~~i~~e~k~~------Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p----~~Wp~ll~~l~~~l~s~~~~~~ 140 (959)
T d1wa5c_ 71 DENGNHLLPANNVEL------IKKEIVPLMISLPNNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTN 140 (959)
T ss_dssp CSSSCBSSCHHHHHH------HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHH
T ss_pred cccccCCCCHHHHHH------HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc----cccHHHHHHHHHHhCCCCHHHH
Confidence 11222 223466667778889999999999998875411 12 5679999999998888889
Q ss_pred HHHHHHHHHhccc
Q 012677 315 KDVASAIFSLCIL 327 (458)
Q Consensus 315 ~~a~~aL~~L~~~ 327 (458)
..++.+|..++..
T Consensus 141 ~~~L~~l~~i~k~ 153 (959)
T d1wa5c_ 141 KGVLTVAHSIFKR 153 (959)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
|
| >d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Glucocorticoid receptor-like (DNA-binding domain) superfamily: Glucocorticoid receptor-like (DNA-binding domain) family: LIM domain domain: Cysteine-rich (intestinal) protein, CRP, CRIP species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]
Probab=82.41 E-value=0.29 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.642 Sum_probs=22.3
Q ss_pred cccccccccccCCccC-CCcccccHHHHHH
Q 012677 80 FRCPISGEIMTDPVVL-ANGQTFDRPCIQR 108 (458)
Q Consensus 80 ~~C~ic~~~~~~p~~l-~cgh~fc~~ci~~ 108 (458)
|.|..|..-+..-.+. .=|..||+.|.-+
T Consensus 1 frca~cgk~lestt~adkdgeiyck~cyak 30 (31)
T d1ibia2 1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK 30 (31)
T ss_dssp EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred CccccccCccccceeeccCCcEEEeeeeec
Confidence 6799999887765444 4799999999753
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.72 E-value=16 Score=32.02 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhccCcchhHhhc-cCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchhHHHhhCcHHHHHHHhc
Q 012677 270 IETRRNAAAALFSLSALDSNKLIIGK-LGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKRRAVHAGAVRVILRKIM 348 (458)
Q Consensus 270 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~i~~~g~v~~Lv~ll~ 348 (458)
......++..|..|..+..+...+.+ .++|..|+..|.++.+.++..|...|..+|...++.. +
T Consensus 70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~------g--------- 134 (343)
T d2bnxa1 70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED------M--------- 134 (343)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTT------H---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCc------h---------
Confidence 45677788899998877777666655 8899999999999999999999999999986543111 1
Q ss_pred cCCcHHHHHHHHHHhcCCHHHHHHHHhcCCHHHHHHHHhhcCChhHHhHHHHHHHHHhccCch-----hHHHHHHhhhhh
Q 012677 349 ENSLVDELLAILAMLSSHQDAIEEIGELGAIPCLLRIIRESTCERNKENCAAILYNICFTDRT-----RTREIMEEENAN 423 (458)
Q Consensus 349 ~~~~~~~a~~~L~~La~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~L~~~~~~-----~~~~~~~~~g~~ 423 (458)
...++.++.+ .....+.+-...+++.++.+.+.+.+..++..+-.|....++ ..+.-+...|..
T Consensus 135 ----~~~vL~Al~~-------~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~ 203 (343)
T d2bnxa1 135 ----NERVLEAMTE-------RAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 203 (343)
T ss_dssp ----HHHHHHHHHH-------HHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred ----HHHHHHHHHH-------HHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChH
Confidence 1122222221 112233445677777777665567777777777777766553 122233347777
Q ss_pred HHHHHHhhhCCHHHHH
Q 012677 424 GTLSRLAENGTSRAKR 439 (458)
Q Consensus 424 ~~L~~ll~~~~~~~~~ 439 (458)
+.+-++-...++....
T Consensus 204 ~il~~l~~~~~~~L~~ 219 (343)
T d2bnxa1 204 QVLQELREIENEDMKV 219 (343)
T ss_dssp HHHHHHTTCCCHHHHH
T ss_pred HHHHHHHccCChHHHH
Confidence 7776665556665443
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.21 E-value=16 Score=36.41 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHHhhccCcchhHhhccCchHHHHHHhhcCChHHHHHHHHHHHHhcccccchh---------HHHh--h
Q 012677 269 TIETRRNAAAALFSLSALDSNKLIIGKLGAMTPLIDLLEEGHPLAMKDVASAIFSLCILLENKR---------RAVH--A 337 (458)
Q Consensus 269 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~---------~i~~--~ 337 (458)
..-++..+++++...+..... ... ...++.++..|.+.+..++..|+.+|..++....... .+.. .
T Consensus 471 ~~~lr~~~~~~i~~~~~~~~~-~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (959)
T d1wa5c_ 471 HIILRVDAIKYIYTFRNQLTK-AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (959)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH-HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred hHHHHHHHHHHHHHHHhhccH-HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence 467888889999888754321 111 3578899999998899999999999999986443211 1111 1
Q ss_pred CcHHHHHHHhccC--C-----cHHHHHHHHHHhcCC-HHHHHHHHhcCCHHHHHHHHh----hcCChhHHhHHHHHHHHH
Q 012677 338 GAVRVILRKIMEN--S-----LVDELLAILAMLSSH-QDAIEEIGELGAIPCLLRIIR----ESTCERNKENCAAILYNI 405 (458)
Q Consensus 338 g~v~~Lv~ll~~~--~-----~~~~a~~~L~~La~~-~~~~~~i~~~g~i~~Lv~ll~----~~~~~~~~~~a~~~L~~L 405 (458)
..+..|+..+... . ..+..+.+|..+... ++.-..+. ...++.|+.++. ++.+.........+|..+
T Consensus 548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l 626 (959)
T d1wa5c_ 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (959)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 3445555555433 1 123355555544321 11000000 012344444443 223355666666777777
Q ss_pred hccC-chhHHHHHHhhhhhHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 012677 406 CFTD-RTRTREIMEEENANGTLSRLAENGTSRAKRKANGILERLNKA 451 (458)
Q Consensus 406 ~~~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~A~~~L~~l~~~ 451 (458)
.... +.....+. ...++.+...+..........+..++..+.+.
T Consensus 627 ~~~~~~~~~~~l~--~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~ 671 (959)
T d1wa5c_ 627 LNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (959)
T ss_dssp HHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHhcCchhHHHHH--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence 6533 22332332 44567777777665555556666666655543
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.04 E-value=0.26 Score=31.37 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=34.8
Q ss_pred CCCCCCccCCCCCCcc--cHH-HHHHHHHHHHHhCCCCCCCCCCCCCcccc
Q 012677 116 TCPQTRQVLSHTVLIP--NHL-VREMISQWCKEHGIELPKPIKDTDEDVVT 163 (458)
Q Consensus 116 ~CP~c~~~l~~~~~~~--n~~-l~~~i~~~~~~~~~~~p~~~~~~~~~~~~ 163 (458)
.||.|...+..+...+ .+. -+..|.+|..+++ ++|.+.++++..++.
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~-~CP~c~~~l~~~dLi 51 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEEIV 51 (56)
T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGGCE
T ss_pred CCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc-CCCccCCcCCHHhce
Confidence 5999999998765443 233 4899999999876 689888777655543
|