Citrus Sinensis ID: 012679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MDAGSMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEcccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEccccccEEEccccccEEEccccccccEEEEEEEccccEEEEEEccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEEcccccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccEccccccccccEEEEEcccccHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccEEcccccccEEEccccccccEEEEEEEccccEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEccccEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccccccccEEEEEcccccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEcccccccEEEEEcccccc
Coil and Loop (DISEMBL)
mdagsmkaesrcplqEQFLQRKNSKenldrfipnrsamdfdyaHYMVtegrkdkennqamsvcspsKEAYRKQLAEVFNMNRTRIlafknkpptpvelipemhsssasasSSVQQaklnkprrhipqssertldapdlvddYYLNLLDWGSSNVLAIALGSTVYlwdasdgttselvtvddengpvtsvnwapdgrhiaIGLNNCQVQLWDSTANRQLrtlrgghrsrvgslawnnhilttggmdgliinndvrVRDHIVETyrghnqevcglkwsasgqqlasggndnllHIWDRSMASSNSVTQWLHRLEEHTSAVKAiawcpfqsnllatgggggdrCIKFWNThtgaclnsvdTGSQVCALLWNKNERELlsshgftqnqltlwkypsMVKMAELSGHTSRVLFmaqspdgctvaSAAADETLRFwnvfgapqvisksapkpnrepfaqlnrir
Flexible Loop (DISEMBL)
mdagsmkaesrcplqeqflqrknskenldrfipnrsamdfDYAHYMVTegrkdkennqAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQaklnkprrhipqssertldapdLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSElvtvddengpVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTlrgghrsrvgslawNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGApqvisksapkpnrepfaqlnrir
Low Complexity Region (SEG)
MDAGSMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHsssasasssVQQAKLNKPRRHIPQSSERTLDAPdlvddyylnlldWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR
Disordered region (IsUnstruct)
************************************AMDFDYAHYMV**************************LAEVFNMNRTRILAF************************************************DLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN***********CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV********************
Disordered Region (DISOPRED)
*******************************IPNRSAMDFDY*************************************************************************************SSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF******************AQLN*I*
Disordered Region (DISEMBL)
***********CPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPE***************************SERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR
Disordered Region (DISPRO)
******************************FIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVE**PEMHSSS*SASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAGSMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q54MZ3	499	Anaphase-promoting comple	yes	no	0.868	0.797	0.510	1e-115
Q12834	499	Cell division cycle prote	yes	no	0.873	0.801	0.459	1e-104
Q5H7C0	499	Cell division cycle prote	yes	no	0.873	0.801	0.457	1e-104
Q62623	499	Cell division cycle prote	yes	no	0.873	0.801	0.452	1e-103
Q9JJ66	499	Cell division cycle prote	yes	no	0.873	0.801	0.450	1e-103
Q8L3Z8	483	Protein FIZZY-RELATED 2 O	no	no	0.873	0.828	0.436	2e-93
Q8LPL5	481	Protein FIZZY-RELATED 3 O	no	no	0.646	0.615	0.539	2e-92
Q8VZS9	475	Protein FIZZY-RELATED 1 O	no	no	0.877	0.846	0.444	1e-91
Q54KM3	754	Anaphase-promoting comple	no	no	0.681	0.413	0.472	4e-89
Q9UM11	496	Fizzy-related protein hom	no	no	0.868	0.802	0.422	2e-88

>sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1

 Score =  417 bits (1072), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/429 (51%), Positives = 285/429 (66%), Gaps = 31/429 (7%)

Query: 29  DRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEA--------------YRKQL 74
           DRFIPN+  M+ D  H+ +T+   +   N   +  S S                 Y+  L
Sbjct: 48  DRFIPNK--MNIDIGHFNLTKENSNPNPNAINNNSSTSTSTTATSSTTNNIESTLYKDTL 105

Query: 75  A-EVFNMN----RTRILAFKNKPP-----TPVELIPEMHSSSASASSSVQQAKLNKPRRH 124
           A ++F  N     ++IL+FK+K P     +    +  ++S +   S+   Q+ L K  R 
Sbjct: 106 ANQLFESNSGDLESKILSFKSKAPVGNVSSSTNSLRVLYSQNQVGSTPTDQS-LKKQFRQ 164

Query: 125 IPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG 184
           IPQ  ER LDAPD+VDDYYLNLLDW S NV+AI LG TVYLW+A+      L  V+ ++ 
Sbjct: 165 IPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVYLWNATTSEIQRLFQVEQQDD 224

Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGM 244
            +TS+ W  DG ++A+G N+C +QLWD    +++R LRG H  RVG+LAWN++IL++G  
Sbjct: 225 YITSLQWTKDGNYLAVGTNSCTIQLWDVAHTKKVRELRG-HAGRVGALAWNDYILSSGSS 283

Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
           D  I N+DVRV++H V T  GH+QEVCGLKWS  G QLASGGNDN+++IWD  + S N  
Sbjct: 284 DTNIFNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQLASGGNDNIINIWD--INSENFE 341

Query: 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364
           T   H  E+HT+AV+A+AWCPFQ NLLATGGG  DR I+FWNT TG CLN+VDT SQVC+
Sbjct: 342 TP-AHTFEQHTAAVRALAWCPFQPNLLATGGGAADRTIRFWNTITGVCLNTVDTMSQVCS 400

Query: 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424
           + W+   REL+SSHG++QNQL +WKYPSMVK AEL+GHTSR L  A SPDG TV SA+AD
Sbjct: 401 IQWSTTYRELVSSHGYSQNQLCVWKYPSMVKCAELTGHTSRALHTAISPDGETVVSASAD 460

Query: 425 ETLRFWNVF 433
           ETLRFW VF
Sbjct: 461 ETLRFWRVF 469

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
Dictyostelium discoideum (taxid: 44689)

>sp|Q12834|CDC20_HUMAN Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/422 (45%), Positives = 276/422 (65%), Gaps = 22/422 (5%)

Query: 19  LQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA--- 75
           +Q   SK   DR+IP+RSA   + A +++++     EN+Q     +P+K+ ++K  A   
Sbjct: 67  VQTTPSKPGGDRYIPHRSAAQMEVASFLLSK-ENQPENSQ-----TPTKKEHQKAWALNL 120

Query: 76  EVFNMNRTRILAFKNKPPTPVE----LIPEMHSSSASASSSVQQAKLNKPRRHIPQSSER 131
             F++   +IL    KP    E     +  ++S  A+  SS       K  R+IP   +R
Sbjct: 121 NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSS------RKTCRYIPSLPDR 174

Query: 132 TLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNW 191
            LDAP++ +DYYLNL+DW S NVLA+AL ++VYLW AS G   +L+ ++     ++SV W
Sbjct: 175 ILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 234

Query: 192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINN 251
             +G ++A+G ++ +VQLWD    ++LR +   H +RVGSL+WN++IL++G   G I ++
Sbjct: 235 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHH 293

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
           DVRV +H V T  GH+QEVCGL+W+  G+ LASGGNDNL+++W  +      V   L   
Sbjct: 294 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTF 351

Query: 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371
            +H  AVKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + 
Sbjct: 352 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 411

Query: 372 RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           +EL+S HGF QNQL +WKYP+M K+AEL GHTSRVL +  SPDG TVASAAADETLR W 
Sbjct: 412 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 471

Query: 432 VF 433
            F
Sbjct: 472 CF 473

Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5H7C0|CDC20_PIG Cell division cycle protein 20 homolog OS=Sus scrofa GN=CDC20 PE=2 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/422 (45%), Positives = 274/422 (64%), Gaps = 22/422 (5%)

Query: 19  LQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA--- 75
           +Q   SK   DR+IP+RSA   + A +++++       NQ  +  +P+K+ ++K  A   
Sbjct: 67  MQTTPSKPGGDRYIPHRSASQMEVASFLLSK------ENQPDNSQTPTKKEHQKAWALNL 120

Query: 76  EVFNMNRTRILAFKNKPPTPVE----LIPEMHSSSASASSSVQQAKLNKPRRHIPQSSER 131
             F++   +IL    KP    E     +  ++S  A+  SS       K  R+IP   +R
Sbjct: 121 NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSS------RKTCRYIPSLPDR 174

Query: 132 TLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNW 191
            LDAP++ +DYYLNL+DW S NVLA+AL ++VYLW AS G   +L+ ++     V+SV W
Sbjct: 175 ILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGDYVSSVAW 234

Query: 192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINN 251
             +G ++A+G ++ +VQLWD    ++LR +   H +RVGSL WN++IL++G   G I ++
Sbjct: 235 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLCWNSYILSSGSRSGHIHHH 293

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
           DVRV +H V T  GH+QEVCGL+W+  G+ LASGGNDNL+++W  +      V   L   
Sbjct: 294 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTF 351

Query: 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371
            +H  AVKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + 
Sbjct: 352 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY 411

Query: 372 RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           +EL+S HGF QNQL +WKYP+M K+AEL GHT+RVL +  SPDG TVASAAADETLR W 
Sbjct: 412 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471

Query: 432 VF 433
            F
Sbjct: 472 CF 473

Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation.

Sus scrofa (taxid: 9823)

>sp|Q62623|CDC20_RAT Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/422 (45%), Positives = 272/422 (64%), Gaps = 22/422 (5%)

Query: 19  LQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAE-- 76
           +Q   SK   DR+IP RSA   + A +++++       NQ     +P+K+ ++K  A   
Sbjct: 67  VQTTPSKPGGDRYIPQRSASQMEVASFLLSK------ENQPEDGGTPTKKEHQKAWARNL 120

Query: 77  -VFNMNRTRILAFKNKPPTPVE----LIPEMHSSSASASSSVQQAKLNKPRRHIPQSSER 131
             F++   +IL    KP    E     +  ++S  A+  SS       K  R+IP   +R
Sbjct: 121 NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSS------RKACRYIPSLPDR 174

Query: 132 TLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNW 191
            LDAP++ +DYYLNL+DW S NVLA+AL ++VYLW+A  G   +L+ ++     ++SV W
Sbjct: 175 ILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAW 234

Query: 192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINN 251
             +G ++A+G +N +VQLWD    ++LR +   H +RV SL+WN++IL++G   G I ++
Sbjct: 235 IKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTS-HSARVSSLSWNSYILSSGSRSGHIHHH 293

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
           DVRV +H V T  GH+QEVCGL+W+  G+ LASGGNDN++++W      S  V   L   
Sbjct: 294 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVP--LQTF 351

Query: 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371
            +H  AVKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + 
Sbjct: 352 TQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHY 411

Query: 372 RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           +EL+S HGF QNQL +WKYP+M K+AEL GHT+RVL +  SPDG TVASAAADETLR W 
Sbjct: 412 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWR 471

Query: 432 VF 433
            F
Sbjct: 472 CF 473

Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation (By similarity). Interacts with NEK2.

Rattus norvegicus (taxid: 10116)

>sp|Q9JJ66|CDC20_MOUSE Cell division cycle protein 20 homolog OS=Mus musculus GN=Cdc20 PE=1 SV=2

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/422 (45%), Positives = 271/422 (64%), Gaps = 22/422 (5%)

Query: 19  LQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA--- 75
           +Q   SK   DRFIP RSA   + A +++++       NQ     +P+K+ ++K  +   
Sbjct: 67  VQTTPSKPGGDRFIPQRSASQMEVASFLLSK------ENQPEDRGTPTKKEHQKAWSLNL 120

Query: 76  EVFNMNRTRILAFKNKPPTPVE----LIPEMHSSSASASSSVQQAKLNKPRRHIPQSSER 131
             F++   +IL    KP    E     +  ++S  A+  SS       K  R+IP   +R
Sbjct: 121 NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSS------RKTCRYIPSLPDR 174

Query: 132 TLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNW 191
            LDAP++ +DYYLNL+DW S NVLA+AL ++VYLW+A  G   +L+ ++     ++SV W
Sbjct: 175 ILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAW 234

Query: 192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINN 251
             +G ++A+G +N +VQLWD    ++LR +   H +RV SL+WN++IL++G   G I ++
Sbjct: 235 IKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTS-HSARVSSLSWNSYILSSGSRSGHIHHH 293

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
           DVRV +H V T  GH+QEVCGL+W+  G+ LASGGNDN++++W      S      L   
Sbjct: 294 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAP--LQTF 351

Query: 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE 371
            +H  AVKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + 
Sbjct: 352 TQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHY 411

Query: 372 RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           +EL+S HGF QNQL +WKYP+M K+AEL GHT+RVL +  SPDG TVASAAADETLR W 
Sbjct: 412 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLWR 471

Query: 432 VF 433
            F
Sbjct: 472 CF 473

Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation.

Mus musculus (taxid: 10090)

>sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1

 Score =  343 bits (879), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 180/412 (43%), Positives = 257/412 (62%), Gaps = 12/412 (2%)

Query: 29  DRFIPNRSAMDF---DYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRI 85
           DRFIP+RS  +F   D +     +G++D   + A  + +        +  ++   + +R 
Sbjct: 62  DRFIPSRSGSNFALFDLSPSPSKDGKEDGAGSYATLLRAAMFGPETPEKRDITGFSSSRN 121

Query: 86  LAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLN 145
           + F+ K  T   L           S  V  +   K  R +P+S  + LDAP L DD+YLN
Sbjct: 122 I-FRFKTETHRSLNSFSPFGVDDDSPGVSHSGPVKAPRKVPRSPYKVLDAPALQDDFYLN 180

Query: 146 LLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC 205
           L+DW + NVLA+ LG+ VYLW+A     ++L  +  E+  V SV WA  G H+A+G +  
Sbjct: 181 LVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGAEDS-VCSVGWALRGTHLAVGTSTG 239

Query: 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG 265
           +VQ+WD++  ++ RT+ G HR RVG+LAW + +L++G  D  I+  D+R ++  V    G
Sbjct: 240 KVQIWDASRCKRTRTMEG-HRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHVSKLAG 298

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
           H  EVCGLKWS   ++LASGGNDN L +W++        TQ + +  EHT+AVKAIAW P
Sbjct: 299 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS------TQPVLKYSEHTAAVKAIAWSP 352

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
               LLA+GGG  DRCI+FWNT T   L+S+DT SQVC L W+KN  EL+S+HG++QNQ+
Sbjct: 353 HVHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQI 412

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437
            +WKYP+M K+A L+GHT RVL++A SPDG T+ + A DETLRFWNVF +P+
Sbjct: 413 IVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPK 464

Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1

 Score =  340 bits (871), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/304 (53%), Positives = 218/304 (71%), Gaps = 8/304 (2%)

Query: 130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSV 189
            + LDAP L DD+YLN++DW S NVLA+ LG+ VYLW AS+   ++L  +   N  V SV
Sbjct: 163 HKVLDAPSLQDDFYLNVVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLG-PNDSVCSV 221

Query: 190 NWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLII 249
            W  +G +I+IG ++ QVQ+WD T  +++RT+ GGH++R G LAWN+ IL++G  D  I+
Sbjct: 222 QWTREGSYISIGTSHGQVQVWDGTQCKRVRTM-GGHQTRTGVLAWNSRILSSGSRDRNIL 280

Query: 250 NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH 309
            +D+RV+   V    GH  EVCGLKWS   ++LASGGNDN L +W+      N   Q + 
Sbjct: 281 QHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWN------NHSQQPIL 334

Query: 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
           +L EHT+AVKAI W P QS+LLA+GGG  DRCI+FWNT  G  LNS+DTGSQVC L W+K
Sbjct: 335 KLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSK 394

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
           N  E++S+HG++QNQ+ LWKYPSM K+A L+GH+ RVL++A SPDG T+ + A DETLRF
Sbjct: 395 NVNEIVSTHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRF 454

Query: 430 WNVF 433
           WNVF
Sbjct: 455 WNVF 458

Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana GN=FZR1 PE=1 SV=1

 Score =  337 bits (864), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 188/423 (44%), Positives = 263/423 (62%), Gaps = 21/423 (4%)

Query: 29  DRFIPNRSAMDFD-YAHYMVTEGRKDKENNQAMSVCSPSKEAY----RKQLAEVFN--MN 81
           DRFIP+RS  +F  +     +  +KD + + A S  S  K A       + ++V N    
Sbjct: 53  DRFIPSRSGSNFALFDLASSSPNKKDGKEDGAGSYASLLKTALFGPVTPEKSDVVNGFSP 112

Query: 82  RTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDD 141
              I  FK +    + L P   S   S    V  + +  PR+ I +S  + LDAP L DD
Sbjct: 113 SGNIFRFKTETQRSLNLYPPFDSDVVSG---VSPSPVKSPRK-ILRSPYKVLDAPALQDD 168

Query: 142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAI 200
           +YLNL+DW + NVLA+ LG+ VYLW+A     ++L  +  DE   V SV WA  G H+AI
Sbjct: 169 FYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGVDET--VCSVGWALRGTHLAI 226

Query: 201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIV 260
           G ++  VQ+WD    + +RT+ G HR RVG+LAW++ +L++G  D  I+  D+R ++  V
Sbjct: 227 GTSSGTVQIWDVLRCKNIRTMEG-HRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHV 285

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
              +GH  E+CGLKWS+  ++LASGGNDN L +W++        TQ + R  EH +AVKA
Sbjct: 286 SKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQHS------TQPVLRFCEHAAAVKA 339

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           IAW P    LLA+GGG  DRCI+FWNT T   LN VDT SQVC L+W+KN  EL+S+HG+
Sbjct: 340 IAWSPHHFGLLASGGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGY 399

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440
           +QNQ+ +WKYP+M K+A L+GH+ RVL++A SPDG T+ + A DETLRFWNVF +P+  S
Sbjct: 400 SQNQIIVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQS 459

Query: 441 KSA 443
           + +
Sbjct: 460 RES 462

Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C).

Arabidopsis thaliana (taxid: 3702)

>sp|Q54KM3|CDH1_DICDI Anaphase-promoting complex subunit cdh1 OS=Dictyostelium discoideum GN=cdh1 PE=3 SV=1

 Score =  328 bits (842), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 161/341 (47%), Positives = 223/341 (65%), Gaps = 29/341 (8%)

Query: 120 KPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTV 179
           KP+R I ++  + LDAP + DD+YLNL+DW S N+LA+ L ++VYLW+A+    S+L  +
Sbjct: 392 KPQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAVGLDTSVYLWNATTSQVSKLCEM 451

Query: 180 DDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHI 238
           +    PV+SV W    G H+AIG  +  V +WD    +++R L+G H +RV +LAWNNHI
Sbjct: 452 E-SGQPVSSVGWIQRGGIHLAIGGTDGVVSIWDVNKKKKIRELQG-HNTRVNALAWNNHI 509

Query: 239 LTTGGMDGLIINNDVR-VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
           L++GG D +I+++DVR   ++      GH  E+CGLKWS  GQQLASGGNDNLL++WD S
Sbjct: 510 LSSGGKDKVILHHDVRDCSNNYTNRLVGHRHEICGLKWSPDGQQLASGGNDNLLNVWDHS 569

Query: 298 MASSNSVT-------------------------QWLHRLEEHTSAVKAIAWCPFQSNLLA 332
           M                                + L++ + H +AVKAIAW P Q  LLA
Sbjct: 570 MTQQPQQQHQPPPPPPSSNTSSISQQQQQQNTSKPLYQFKFHYAAVKAIAWSPHQRGLLA 629

Query: 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392
           +GGG  D+CI+FWNT TG  + S+DTGSQVC L W+KN  EL+S+HG++QNQ+T+W YP+
Sbjct: 630 SGGGTHDKCIRFWNTTTGQSIQSIDTGSQVCNLAWSKNINELVSTHGYSQNQITVWNYPT 689

Query: 393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
           M  +  L+GHT RVL++A SPDG TV + A D +LRFWN+F
Sbjct: 690 MTPVTTLTGHTMRVLYLAVSPDGQTVCTGAGDNSLRFWNLF 730

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UM11|FZR_HUMAN Fizzy-related protein homolog OS=Homo sapiens GN=FZR1 PE=1 SV=2

 Score =  327 bits (837), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/435 (42%), Positives = 254/435 (58%), Gaps = 37/435 (8%)

Query: 29  DRFIPNRSAMDFDYAHYMVTEGRKD-KENNQAMSVCSPSKE---AYRKQL------AEVF 78
           DRFIP+R+  ++    + + E  K   +N +A    S + +   AY   L      A + 
Sbjct: 46  DRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDGLAYSALLKNELLGAGIE 105

Query: 79  NMNRTRILAFKNKPPTPVELIPEMHSSSASASS---------------SVQQAKL----N 119
            +   +    + +P TP +     +S S   SS               S +  KL     
Sbjct: 106 KVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPDDGNDVSPYSLSPVSNKSQKLLRSPR 165

Query: 120 KPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTV 179
           KP R I +   + LDAP+L DD+YLNL+DW S NVL++ LG+ VYLW A     + L  +
Sbjct: 166 KPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDL 225

Query: 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL 239
             E   VTSV W+  G  +A+G +   VQ+WD+ A ++L  L G H +RVG+LAWN   L
Sbjct: 226 SVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEG-HTARVGALAWNAEQL 284

Query: 240 TTGGMDGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298
           ++G  D +I+  D+R      E   +GH QEVCGLKWS   Q LASGGNDN L +W+ S 
Sbjct: 285 SSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSS 344

Query: 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358
            S       + +  EH +AVKAIAW P Q  LLA+GGG  DRCI+FWNT TG  L  +DT
Sbjct: 345 LSP------VQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDT 398

Query: 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
           GSQVC L W+K+  EL+S+HG++QNQ+ +WKYPS+ ++A+L+GH+ RVL++A SPDG  +
Sbjct: 399 GSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAI 458

Query: 419 ASAAADETLRFWNVF 433
            + A DETLRFWNVF
Sbjct: 459 VTGAGDETLRFWNVF 473

Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
255557949	447	cell division cycle, putative [Ricinus c	0.975	1.0	0.842	0.0
449463781	453	PREDICTED: anaphase-promoting complex su	0.978	0.988	0.835	0.0
225463838	450	PREDICTED: anaphase-promoting complex su	0.973	0.991	0.829	0.0
356497369	455	PREDICTED: anaphase-promoting complex su	0.980	0.986	0.808	0.0
283837097	453	cell division control 20 [Solanum lycope	0.971	0.982	0.822	0.0
356540365	541	PREDICTED: anaphase-promoting complex su	0.980	0.829	0.803	0.0
224123602	455	predicted protein [Populus trichocarpa]	0.980	0.986	0.818	0.0
224144606	455	predicted protein [Populus trichocarpa]	0.980	0.986	0.816	0.0
297798612	456	CDC20.1 [Arabidopsis lyrata subsp. lyrat	0.984	0.989	0.794	0.0
15234128	457	cell division cycle 20, cofactor of APC	0.984	0.986	0.790	0.0

>gi|255557949|ref|XP_002520003.1| cell division cycle, putative [Ricinus communis] gi|223540767|gb|EEF42327.1| cell division cycle, putative [Ricinus communis]

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/458 (84%), Positives = 413/458 (90%), Gaps = 11/458 (2%)

Query: 1   MDAGSMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAM 60
           MDAG  KA+SR PLQEQFLQRKNSKENLDRFIPNRSAMD DYAHYM+TEG+K +EN    
Sbjct: 1   MDAG--KAQSRFPLQEQFLQRKNSKENLDRFIPNRSAMDLDYAHYMLTEGKKGQENTL-- 56

Query: 61  SVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNK 120
            V SPS++AYRKQLAE  NMNRTRILAFKNKPP PVELIP+ H SS        QAK  K
Sbjct: 57  -VSSPSRDAYRKQLAETLNMNRTRILAFKNKPPVPVELIPQEHLSSTHL-----QAKPTK 110

Query: 121 PRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVD 180
            +RHIPQ+SERTLDAPDLVDD+YLNLLDWGSSNVLAIALG+T+YLWDAS+G+TSELVTVD
Sbjct: 111 SQRHIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIALGNTIYLWDASNGSTSELVTVD 170

Query: 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT 240
           DE GPVTSVNWAPDGRHIAIGLNN +VQLWDS ANRQLRTLRGGHRSRVG+LAWNNHILT
Sbjct: 171 DEIGPVTSVNWAPDGRHIAIGLNNSEVQLWDSAANRQLRTLRGGHRSRVGALAWNNHILT 230

Query: 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300
           TGGMDG IINNDVR+R HIVETYRGH QEVCGLKWSASGQQLASGGNDNL+HIWDRS+AS
Sbjct: 231 TGGMDGQIINNDVRIRSHIVETYRGHQQEVCGLKWSASGQQLASGGNDNLVHIWDRSVAS 290

Query: 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS 360
           SNS  QWLHRLEEHTSAVKA+AWCPFQ NLLATGGGGGDR IKFWNTHTGACLNSVDTGS
Sbjct: 291 SNSAIQWLHRLEEHTSAVKALAWCPFQGNLLATGGGGGDRTIKFWNTHTGACLNSVDTGS 350

Query: 361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420
           QVC+LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVL+M QSPDGCTVA+
Sbjct: 351 QVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMTQSPDGCTVAT 410

Query: 421 AAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           AA DETLRFWNVFG PQV +K+APK N EPF+ L RIR
Sbjct: 411 AAGDETLRFWNVFGVPQV-AKAAPKANSEPFSHLTRIR 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463781|ref|XP_004149610.1| PREDICTED: anaphase-promoting complex subunit cdc20-like [Cucumis sativus] gi|449527067|ref|XP_004170534.1| PREDICTED: anaphase-promoting complex subunit cdc20-like [Cucumis sativus]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/463 (83%), Positives = 413/463 (89%), Gaps = 15/463 (3%)

Query: 1   MDAGSMKA----ESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKEN 56
           MDAGS+       SRCPLQEQ LQRK S+ENLDRFIPNRSAMDFDYAHYMVTEGRK KEN
Sbjct: 1   MDAGSLSTSNANHSRCPLQEQHLQRKQSRENLDRFIPNRSAMDFDYAHYMVTEGRKGKEN 60

Query: 57  NQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQA 116
               S  SPS+EAY+K+LAE FNMNRTRILAFKNKPP PVELIP+   SS S    V   
Sbjct: 61  P---SFSSPSREAYQKRLAETFNMNRTRILAFKNKPPAPVELIPKEFFSSVSHDKPV--- 114

Query: 117 KLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSEL 176
              K RRHIPQ+SE+TLDAPDLVDDYYLNLLDWGSSNVLAIALG+TVYLW+A+DG+TSEL
Sbjct: 115 ---KARRHIPQTSEKTLDAPDLVDDYYLNLLDWGSSNVLAIALGNTVYLWNATDGSTSEL 171

Query: 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN 236
           VTVDDE GPVTSV+WAPDGRHIAIGLNN +VQLWDSTANRQLRTL+GGHR RVGSLAWNN
Sbjct: 172 VTVDDEVGPVTSVSWAPDGRHIAIGLNNSEVQLWDSTANRQLRTLKGGHRMRVGSLAWNN 231

Query: 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296
           HILTTGGMDG I+NNDVR+RDHIVETYRGH+QEVCGLKWS SGQQLASGGNDN+LHIWDR
Sbjct: 232 HILTTGGMDGKILNNDVRIRDHIVETYRGHDQEVCGLKWSLSGQQLASGGNDNVLHIWDR 291

Query: 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
           SMASSNS TQWLHRLE+HTSAVKA+AWCPFQ NLLATGGG GDR IKFWNTHTGACLNSV
Sbjct: 292 SMASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLATGGGAGDRTIKFWNTHTGACLNSV 351

Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
           DTGSQVCALLWNKNERELLSSHGF+QNQLTLWKYPSMVKM EL+GHTSRVLFMAQSPDGC
Sbjct: 352 DTGSQVCALLWNKNERELLSSHGFSQNQLTLWKYPSMVKMGELTGHTSRVLFMAQSPDGC 411

Query: 417 TVASAAADETLRFWNVFGAPQVISKSAPKPN-REPFAQLNRIR 458
           TVASAAADETLRFWNVFG P+V +K APK +  EPFA LNRIR
Sbjct: 412 TVASAAADETLRFWNVFGTPEV-AKPAPKSSVTEPFAHLNRIR 453

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463838|ref|XP_002264396.1| PREDICTED: anaphase-promoting complex subunit cdc20 [Vitis vinifera] gi|147796362|emb|CAN70390.1| hypothetical protein VITISV_013663 [Vitis vinifera] gi|296088759|emb|CBI38209.3| unnamed protein product [Vitis vinifera]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/462 (82%), Positives = 411/462 (88%), Gaps = 16/462 (3%)

Query: 1   MDAGSM----KAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKEN 56
           MDAGS+    K +S+CP Q     R+  +ENLDRFIPNRSAMDFDYAHYM+TEGRK KEN
Sbjct: 1   MDAGSLTSSNKYQSKCPDQ-----RRTVRENLDRFIPNRSAMDFDYAHYMLTEGRKGKEN 55

Query: 57  NQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQA 116
             A    SPSKEAYRKQ+AE  N+NRTRILAFKNKPPTPVELIP+   S+    S  QQ+
Sbjct: 56  PAA---SSPSKEAYRKQMAETLNINRTRILAFKNKPPTPVELIPQEFYSA----SIPQQS 108

Query: 117 KLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSEL 176
           K +KPRRHIPQ+SERTLDAPDLVDDYYLNLLDWGSSNVLAIALG TVYLWDASDG+TSEL
Sbjct: 109 KASKPRRHIPQTSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGGTVYLWDASDGSTSEL 168

Query: 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN 236
           VT++DE GPVTSV+WAPDGRHIAIGLNN  VQLWDSTANR LRTL+GGH SRVGSLAWNN
Sbjct: 169 VTLEDETGPVTSVSWAPDGRHIAIGLNNSDVQLWDSTANRLLRTLKGGHASRVGSLAWNN 228

Query: 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296
           H+LTTGGMDG IINNDVRVR HIVETYRGH QEVCGLKWSASGQQLASGGNDNLLHIWDR
Sbjct: 229 HVLTTGGMDGKIINNDVRVRSHIVETYRGHRQEVCGLKWSASGQQLASGGNDNLLHIWDR 288

Query: 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
           S ASSNS TQWLHR+E+HT+AVKA+AWCPFQ NLLA+GGGGGDRCIKFWNTHTGACLNSV
Sbjct: 289 SSASSNSPTQWLHRMEDHTAAVKALAWCPFQGNLLASGGGGGDRCIKFWNTHTGACLNSV 348

Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
           DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVLFMAQSPDGC
Sbjct: 349 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLFMAQSPDGC 408

Query: 417 TVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           TVASAA DETLRFWNVFG P+V +K APK + EPFA LNRIR
Sbjct: 409 TVASAAGDETLRFWNVFGTPEVAAKPAPKAHPEPFAHLNRIR 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497369|ref|XP_003517533.1| PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/464 (80%), Positives = 411/464 (88%), Gaps = 15/464 (3%)

Query: 1   MDAGSM------KAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDK 54
           MDAGS+      K  SR PLQEQF+QRK+SKENLDRFIPNRSAMDFDYAHYM+TEG K K
Sbjct: 1   MDAGSLSSSGTLKTRSRYPLQEQFIQRKSSKENLDRFIPNRSAMDFDYAHYMLTEGNKGK 60

Query: 55  ENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQ 114
           EN     VCSPS+EAYRKQLAE  NMNRTRILAFKNKPP PV+LIP         S+   
Sbjct: 61  ENPD---VCSPSREAYRKQLAESLNMNRTRILAFKNKPPAPVDLIPH------EMSTHTH 111

Query: 115 QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTS 174
             K  KP+R IPQ+SE+TLDAPDLVDDYYLNLLDWGS+NVLAIALGSTVYLWDA++G+TS
Sbjct: 112 DNKPAKPKRFIPQTSEKTLDAPDLVDDYYLNLLDWGSANVLAIALGSTVYLWDATNGSTS 171

Query: 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW 234
           ELVTVDDE+GPVTS++WAPDGRHIA+GLNN +VQLWD+T+NRQLRTLRGGHR RVGSLAW
Sbjct: 172 ELVTVDDEDGPVTSLSWAPDGRHIAVGLNNSEVQLWDTTSNRQLRTLRGGHRQRVGSLAW 231

Query: 235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
           NNHILTTGGMDG I+NNDVR+R H+VETY GH QEVCGLKWSASG QLASGGNDNLL+IW
Sbjct: 232 NNHILTTGGMDGRIVNNDVRIRSHVVETYSGHEQEVCGLKWSASGSQLASGGNDNLLYIW 291

Query: 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354
           DR+ ASSNS TQWLHRLE+HTSAVKA+AWCPFQ NLLA+GGG GDRCIKFWNTHTGACLN
Sbjct: 292 DRATASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGSGDRCIKFWNTHTGACLN 351

Query: 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
           S+DTGSQVC+LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVLFMAQSPD
Sbjct: 352 SIDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLFMAQSPD 411

Query: 415 GCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           GCTVASAAADETLRFWNVFGAP+  SK+APK   EPF+ +NRIR
Sbjct: 412 GCTVASAAADETLRFWNVFGAPEAASKAAPKARAEPFSNVNRIR 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283837097|emb|CBH19893.1| cell division control 20 [Solanum lycopersicum var. cerasiforme]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/461 (82%), Positives = 413/461 (89%), Gaps = 16/461 (3%)

Query: 1   MDAGSM-----KAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKE 55
           MDAGS      K +SRCPLQEQ LQRKNS++NLDRFIPNRSAMDFDYAHYM+TEGRK KE
Sbjct: 1   MDAGSHSASSNKKQSRCPLQEQLLQRKNSRDNLDRFIPNRSAMDFDYAHYMLTEGRKGKE 60

Query: 56  NNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQ 115
           N    +V SPS+EAYRKQLAE FNMNR+RILAFKNKPPTPVE IP       +  +SVQQ
Sbjct: 61  N---PAVSSPSREAYRKQLAETFNMNRSRILAFKNKPPTPVEAIP-------NEIASVQQ 110

Query: 116 AKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSE 175
            K  KPRR+IPQ+SERTLDAPD++DDYYLNLLDWGSSNVL+IALG TVYLWDASDG TSE
Sbjct: 111 NKTAKPRRYIPQTSERTLDAPDIMDDYYLNLLDWGSSNVLSIALGGTVYLWDASDGATSE 170

Query: 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN 235
           LVTVD+ENGPVTSV WAPDGRHIA+GLNN +VQLWDSTANR LRTL+GGHRSRVG+L WN
Sbjct: 171 LVTVDEENGPVTSVKWAPDGRHIAVGLNNSEVQLWDSTANRLLRTLKGGHRSRVGALDWN 230

Query: 236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
           NHILTTGGMDG IINNDVR+R+ IV+TY+GH+QEVCGLKWSASGQQLASGGNDNLLHIWD
Sbjct: 231 NHILTTGGMDGQIINNDVRIRNPIVDTYQGHHQEVCGLKWSASGQQLASGGNDNLLHIWD 290

Query: 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355
           RS ASSNS TQWLHRLE+HT+AVKA+AWCPFQ NLLA+GGGG DRCIKFWNTHTGACLNS
Sbjct: 291 RSTASSNSTTQWLHRLEDHTAAVKALAWCPFQGNLLASGGGGSDRCIKFWNTHTGACLNS 350

Query: 356 VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415
           +DTGSQVC+LLWNKNERELLSSHGFTQNQLTLWKYPSMVK+AEL+GHTSRVLFMAQSPDG
Sbjct: 351 IDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKVAELTGHTSRVLFMAQSPDG 410

Query: 416 CTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNR 456
           CTVASAA DETLRFWNVFG P+  +K APK N EPFA LNR
Sbjct: 411 CTVASAAGDETLRFWNVFGTPEA-AKPAPKANPEPFAHLNR 450

Source: Solanum lycopersicum var. cerasiforme

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540365|ref|XP_003538660.1| PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/464 (80%), Positives = 410/464 (88%), Gaps = 15/464 (3%)

Query: 1   MDAGSM------KAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDK 54
           MDAGS+      K  SR PLQEQF+QRK+SKENLDRFIPNRSAMDFDYAHYM+TEG K K
Sbjct: 87  MDAGSLSSSGTLKTRSRYPLQEQFIQRKSSKENLDRFIPNRSAMDFDYAHYMLTEGNKGK 146

Query: 55  ENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQ 114
           EN     VCSPS+EAYRKQLAE  NMNRTRILAFKNKPP P++LIP         S+   
Sbjct: 147 ENPD---VCSPSREAYRKQLAESLNMNRTRILAFKNKPPAPLDLIPH------EMSTYTH 197

Query: 115 QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTS 174
             K  KP+R IPQSSE+TLDAPD+VDDYYLNLLDWGS+NVLAIALGSTVYLWDA +G+TS
Sbjct: 198 DNKPAKPKRFIPQSSEKTLDAPDIVDDYYLNLLDWGSANVLAIALGSTVYLWDARNGSTS 257

Query: 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW 234
           ELVTVDDE+GPVTSV+WAPDGRHIA+GLNN +VQLWD+++NRQLRTLRGGHR RVGSLAW
Sbjct: 258 ELVTVDDEDGPVTSVSWAPDGRHIAVGLNNSEVQLWDTSSNRQLRTLRGGHRQRVGSLAW 317

Query: 235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
           NNHILT+GGMDG I+NNDVR+R H+VETY GH QEVCGLKWSASG QLASGGNDNLL+IW
Sbjct: 318 NNHILTSGGMDGRIVNNDVRIRSHVVETYSGHEQEVCGLKWSASGSQLASGGNDNLLYIW 377

Query: 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354
           DR+ ASSNS TQWLHRLE+HTSAVKA+AWCPFQ NLLA+GGG GDRCIKFWNTHTGACLN
Sbjct: 378 DRATASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGSGDRCIKFWNTHTGACLN 437

Query: 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
           S+DTGSQVC+LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVLFMAQSPD
Sbjct: 438 SIDTGSQVCSLLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPD 497

Query: 415 GCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           GCTVASAAADETLRFWNVFGAP+  SK+APK   EPF+ +NRIR
Sbjct: 498 GCTVASAAADETLRFWNVFGAPEAASKAAPKARAEPFSNVNRIR 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123602|ref|XP_002319120.1| predicted protein [Populus trichocarpa] gi|222857496|gb|EEE95043.1| predicted protein [Populus trichocarpa]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/464 (81%), Positives = 414/464 (89%), Gaps = 15/464 (3%)

Query: 1   MDAGS------MKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDK 54
           MDAGS      +KA+SR PLQ+QFL R NSKENLDRFIPNRSAMD DYAH+M+TEGRK K
Sbjct: 1   MDAGSINSSSSLKAQSRFPLQQQFLPRMNSKENLDRFIPNRSAMDMDYAHFMLTEGRKGK 60

Query: 55  ENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQ 114
           EN    +V SPS+EAYRKQLAE  NMNRTRILAFKNKPP PVEL+P+ HS          
Sbjct: 61  ENP---TVNSPSREAYRKQLAESLNMNRTRILAFKNKPPAPVELMPQDHSHHH------H 111

Query: 115 QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTS 174
           Q K  KPRRHIPQ+SERTLDAPDLVDD+YLNLLDWGSSNVLAIALGSTVYLWDASDG+TS
Sbjct: 112 QPKTAKPRRHIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIALGSTVYLWDASDGSTS 171

Query: 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW 234
           ELVTVDDE+GP+TSVNWAPDGRHIAIGLNN  +QLWDS +NRQLRTL+GGHRSRVGSLAW
Sbjct: 172 ELVTVDDEDGPITSVNWAPDGRHIAIGLNNSHIQLWDSASNRQLRTLKGGHRSRVGSLAW 231

Query: 235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
           NNHILTTGGMDG IINNDVR+R HIVETYRGH QEVCGLKWSASGQQLASGGNDNL+HIW
Sbjct: 232 NNHILTTGGMDGQIINNDVRIRSHIVETYRGHTQEVCGLKWSASGQQLASGGNDNLIHIW 291

Query: 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354
           DRS A SNS TQWLHRLE+HTSAVKA+AWCPFQ NLLA+GGGGGD+ IKFWNTHTGACLN
Sbjct: 292 DRSTALSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGGGDKSIKFWNTHTGACLN 351

Query: 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
           S+DTGSQVC+LLWNKNERELLSSHGFTQNQLT+WKYPSMVKMAEL+GHTSRVL+MAQSPD
Sbjct: 352 SIDTGSQVCSLLWNKNERELLSSHGFTQNQLTVWKYPSMVKMAELTGHTSRVLYMAQSPD 411

Query: 415 GCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           GCTVA+AA DETLRFWNVFG P+V +K+APK N EPF+ LNR+R
Sbjct: 412 GCTVATAAGDETLRFWNVFGVPEVAAKAAPKANPEPFSHLNRLR 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144606|ref|XP_002325348.1| predicted protein [Populus trichocarpa] gi|222862223|gb|EEE99729.1| predicted protein [Populus trichocarpa]

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/464 (81%), Positives = 413/464 (89%), Gaps = 15/464 (3%)

Query: 1   MDAGSM------KAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDK 54
           MDAGSM      KA+SR PLQ+QFL R NSKENLDRFIPNRSAMD DYA +M+TEGRK K
Sbjct: 1   MDAGSMNTSSSLKAQSRFPLQQQFLPRTNSKENLDRFIPNRSAMDMDYARFMLTEGRKGK 60

Query: 55  ENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQ 114
           EN    +V SPS+EAYRKQLA+  NMNRTRILAFKNKPP PVEL+P+ HS          
Sbjct: 61  ENP---TVNSPSREAYRKQLADSLNMNRTRILAFKNKPPAPVELMPQDHSHHH------H 111

Query: 115 QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTS 174
           Q K  KPRRHIPQ+SERTLDAPDLVDD+YLNLLDWGSSNVLAIALGSTVYLWDASDG+TS
Sbjct: 112 QPKTAKPRRHIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIALGSTVYLWDASDGSTS 171

Query: 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW 234
           ELVTVDDE+GPVTSVNWAPDGRHIAIGLNN  +QLWDS +NRQLRTL+GGHRSRVGS+AW
Sbjct: 172 ELVTVDDEDGPVTSVNWAPDGRHIAIGLNNSHIQLWDSASNRQLRTLKGGHRSRVGSMAW 231

Query: 235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
           NNHILTTGGMDG IINNDVR+R HIVETYRGH QEVCGLKWSASGQQLASGGNDNL+HIW
Sbjct: 232 NNHILTTGGMDGQIINNDVRIRSHIVETYRGHTQEVCGLKWSASGQQLASGGNDNLIHIW 291

Query: 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354
           DRS A SNS TQWLHRLE+HTSAVKA+AWCPFQ NLLA+GGGGGD+ IKFWNTHTGACLN
Sbjct: 292 DRSTALSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGGGDKSIKFWNTHTGACLN 351

Query: 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
           S+DTGSQVC+LLWNKNERELLSSHGFTQNQLT+WKYPSMVKMAEL+GHTSRVL+MAQSPD
Sbjct: 352 SIDTGSQVCSLLWNKNERELLSSHGFTQNQLTVWKYPSMVKMAELTGHTSRVLYMAQSPD 411

Query: 415 GCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           GCTVA+AA DETLRFWNVFG P++ +K+APK N EPF+ LNRIR
Sbjct: 412 GCTVATAAGDETLRFWNVFGVPEIAAKAAPKANPEPFSHLNRIR 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798612|ref|XP_002867190.1| CDC20.1 [Arabidopsis lyrata subsp. lyrata] gi|297313026|gb|EFH43449.1| CDC20.1 [Arabidopsis lyrata subsp. lyrata]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/463 (79%), Positives = 408/463 (88%), Gaps = 12/463 (2%)

Query: 1   MDAG-----SMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKE 55
           MDAG       K+++RCPLQE FL RK SKENLDRFIPNRSAMDFDYAH+ +TEGRK   
Sbjct: 1   MDAGMNTSSHYKSQARCPLQEHFLPRKTSKENLDRFIPNRSAMDFDYAHFALTEGRKG-- 58

Query: 56  NNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQ 115
           N+Q  +V SPSKEAYRKQLAE  N+N TRILAF+NKP  PVEL+P  HS+S       QQ
Sbjct: 59  NDQTAAVSSPSKEAYRKQLAETMNLNHTRILAFRNKPQAPVELLPSNHSASLH-----QQ 113

Query: 116 AKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSE 175
            K  KPRR+IPQ+SERTLDAPD+VDD+YLNLLDWGS+NVLAIAL  TVYLWDAS G+TSE
Sbjct: 114 PKSVKPRRYIPQTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSE 173

Query: 176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN 235
           LVT+D+E GPVTS+NWAPDGRH+A+GLNN +VQLWDS +NRQLRTL+GGH+SRVGSLAWN
Sbjct: 174 LVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWN 233

Query: 236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
           NHILTTGGMDGLIINNDVR+R  IVETYRGH QEVCGLKWS SGQQLASGGNDN++HIWD
Sbjct: 234 NHILTTGGMDGLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWD 293

Query: 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355
           RS+ASSNS TQWLHRLEEHTSAVKA+AWCPFQ+NLLATGGGGGDR IKFWNTHTGACLNS
Sbjct: 294 RSVASSNSNTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNS 353

Query: 356 VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415
           VDTGSQVC+LLW+KNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVL+MAQSPDG
Sbjct: 354 VDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDG 413

Query: 416 CTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           CTVASAA DETLRFWNVFG P+   K+APK   EPF+ +NRIR
Sbjct: 414 CTVASAAGDETLRFWNVFGVPETAKKAAPKAVSEPFSHVNRIR 456

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234128|ref|NP_195053.1| cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana] gi|4490294|emb|CAB38785.1| WD-repeat protein-like protein [Arabidopsis thaliana] gi|7270275|emb|CAB80044.1| WD-repeat protein-like protein [Arabidopsis thaliana] gi|109946631|gb|ABG48494.1| At4g33270 [Arabidopsis thaliana] gi|332660800|gb|AEE86200.1| cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/464 (79%), Positives = 407/464 (87%), Gaps = 13/464 (2%)

Query: 1   MDAG------SMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDK 54
           MDAG        K ++RCPLQE FL RK SKENLDRFIPNRSAM+FDYAH+ +TEGRK K
Sbjct: 1   MDAGMNNTSSHYKTQARCPLQEHFLPRKPSKENLDRFIPNRSAMNFDYAHFALTEGRKGK 60

Query: 55  ENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQ 114
           +  Q  +V SPSKEAYRKQLAE  N+N TRILAF+NKP  PVEL+P  HS+S       Q
Sbjct: 61  D--QTAAVSSPSKEAYRKQLAETMNLNHTRILAFRNKPQAPVELLPSNHSASLH-----Q 113

Query: 115 QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTS 174
           Q K  KPRR+IPQ+SERTLDAPD+VDD+YLNLLDWGS+NVLAIAL  TVYLWDAS G+TS
Sbjct: 114 QPKSVKPRRYIPQTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTS 173

Query: 175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW 234
           ELVT+D+E GPVTS+NWAPDGRH+A+GLNN +VQLWDS +NRQLRTL+GGH+SRVGSLAW
Sbjct: 174 ELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAW 233

Query: 235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
           NNHILTTGGMDGLIINNDVR+R  IVETYRGH QEVCGLKWS SGQQLASGGNDN++HIW
Sbjct: 234 NNHILTTGGMDGLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIW 293

Query: 295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354
           DRS+ASSNS TQWLHRLEEHTSAVKA+AWCPFQ+NLLATGGGGGDR IKFWNTHTGACLN
Sbjct: 294 DRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLN 353

Query: 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
           SVDTGSQVC+LLW+KNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVL+MAQSPD
Sbjct: 354 SVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPD 413

Query: 415 GCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
           GCTVASAA DETLRFWNVFG P+   K+APK   EPF+ +NRIR
Sbjct: 414 GCTVASAAGDETLRFWNVFGVPETAKKAAPKAVSEPFSHVNRIR 457

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2119151	457	CDC20.1 "AT4G33270" [Arabidops	0.971	0.973	0.776	4.9e-195
TAIR|locus:2119141	447	CDC20.2 "AT4G33260" [Arabidops	0.975	1.0	0.772	8.1e-195
TAIR|locus:2148518	444	CDC20.4 "AT5G26900" [Arabidops	0.967	0.997	0.660	1.4e-160
TAIR|locus:2144372	466	CDC20.3 "AT5G27080" [Arabidops	0.949	0.933	0.659	9.9e-158
TAIR|locus:2143636	411	CDC20.5 "AT5G27570" [Arabidops	0.893	0.995	0.685	1.2e-154
TAIR|locus:505006640	428	AT5G27945 "AT5G27945" [Arabido	0.655	0.700	0.754	2.2e-128
DICTYBASE|DDB_G0285601	499	cdc20 "cdc20/fizzy domain-cont	0.871	0.799	0.483	2e-102
FB|FBgn0001086	526	fzy "fizzy" [Drosophila melano	0.893	0.777	0.455	9.4e-98
UNIPROTKB|Q5ZI36	507	CDC20 "Uncharacterized protein	0.945	0.854	0.434	1.1e-94
UNIPROTKB|Q12834	499	CDC20 "Cell division cycle pro	0.882	0.809	0.437	1.9e-92

TAIR|locus:2119151 CDC20.1 "AT4G33270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1889 (670.0 bits), Expect = 4.9e-195, P = 4.9e-195
 Identities = 351/452 (77%), Positives = 388/452 (85%)

Query:     7 KAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPS 66
             K ++RCPLQE FL RK SKENLDRFIPNRSAM+FDYAH+ +TEGRK K+   A+S  SPS
Sbjct:    13 KTQARCPLQEHFLPRKPSKENLDRFIPNRSAMNFDYAHFALTEGRKGKDQTAAVS--SPS 70

Query:    67 KEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPRRHIP 126
             KEAYRKQLAE  N+N TRILAF+NKP  PVEL+P  H          QQ K  KPRR+IP
Sbjct:    71 KEAYRKQLAETMNLNHTRILAFRNKPQAPVELLPSNHSASLH-----QQPKSVKPRRYIP 125

Query:   127 QSSERTLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPV 186
             Q+SERTLDAP            WGS+NVLAIAL  TVYLWDAS G+TSELVT+D+E GPV
Sbjct:   126 QTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPV 185

Query:   187 TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG 246
             TS+NWAPDGRH+A+GLNN +VQLWDS +NRQLRTL+GGH+SRVGSLAWNNHILTTGGMDG
Sbjct:   186 TSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNNHILTTGGMDG 245

Query:   247 LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306
             LIINNDVR+R  IVETYRGH QEVCGLKWS SGQQLASGGNDN++HIWDRS+ASSNS TQ
Sbjct:   246 LIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQ 305

Query:   307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL 366
             WLHRLEEHTSAVKA+AWCPFQ+NLLATGGGGGDR IKFWNTHTGACLNSVDTGSQVC+LL
Sbjct:   306 WLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLL 365

Query:   367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET 426
             W+KNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVL+MAQSPDGCTVASAA DET
Sbjct:   366 WSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDET 425

Query:   427 LRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
             LRFWNVFG P+   K+APK   EPF+ +NRIR
Sbjct:   426 LRFWNVFGVPETAKKAAPKAVSEPFSHVNRIR 457

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0033597 "mitotic checkpoint complex" evidence=IPI

TAIR|locus:2119141 CDC20.2 "AT4G33260" [Arabidopsis thaliana (taxid:3702)]

 Score = 1887 (669.3 bits), Expect = 8.1e-195, P = 8.1e-195
 Identities = 354/458 (77%), Positives = 391/458 (85%)

Query:     1 MDAGSMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAM 60
             MDAG     +RCPLQE FL RKNSKENLDRFIPNRSAM+FDYAH+ +TE RK K+  Q+ 
Sbjct:     1 MDAGL----NRCPLQEHFLPRKNSKENLDRFIPNRSAMNFDYAHFALTEERKGKD--QSA 54

Query:    61 SVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNK 120
             +V SPSKEAYRKQLAE  N+N TRILAF+NKP  PVEL+P  H          QQ K  K
Sbjct:    55 TVSSPSKEAYRKQLAETMNLNHTRILAFRNKPQAPVELLPSNHSASLH-----QQPKSVK 109

Query:   121 PRRHIPQSSERTLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVD 180
             PRR+IPQ+SERTLDAP            WGS+NVLAIAL  TVYLWDAS G+TSELVT+D
Sbjct:   110 PRRYIPQTSERTLDAPDIVDDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTID 169

Query:   181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT 240
             +E GPVTS+NWAPDGRH+A+GLNN +VQLWDS +NRQLRTL+GGH+SRVGSLAWNNHILT
Sbjct:   170 EEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLRTLKGGHQSRVGSLAWNNHILT 229

Query:   241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300
             TGGMDGLIINNDVR+R  IVETYRGH QEVCGLKWS SGQQLASGGNDN++HIWDRS+AS
Sbjct:   230 TGGMDGLIINNDVRIRSPIVETYRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVAS 289

Query:   301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS 360
             SNS TQWLHRLEEHTSAVKA+AWCPFQ+NLLATGGGGGDR IKFWNTHTGACLNSVDTGS
Sbjct:   290 SNSTTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGS 349

Query:   361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420
             QVC+LLW+KNERELLSSHGFTQNQLTLWKYPSMVKMAEL+GHTSRVL+MAQSPDGCTVAS
Sbjct:   350 QVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVAS 409

Query:   421 AAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR 458
             AA DETLRFWNVFG P+   K+APK   EPF+ +NRIR
Sbjct:   410 AAGDETLRFWNVFGVPETAKKAAPKAVAEPFSHVNRIR 447

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0033597 "mitotic checkpoint complex" evidence=IPI

TAIR|locus:2148518 CDC20.4 "AT5G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1564 (555.6 bits), Expect = 1.4e-160, P = 1.4e-160
 Identities = 303/459 (66%), Positives = 355/459 (77%)

Query:     1 MDAGSMKAESRCPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAM 60
             MD+G M+A   C + E FL RK SK+NLDRFIPNRSA DFD+A+Y +T+G   K N    
Sbjct:     1 MDSG-MRAT--CTVPEHFLPRKLSKQNLDRFIPNRSAKDFDFANYALTQG--SKRNLD-- 53

Query:    61 SVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNK 120
              V S S++AY  QLA V N NRTRILAF+NKP +   L+   H          Q  K  K
Sbjct:    54 EVTSASRKAYMTQLAVVMNQNRTRILAFRNKPKS---LLSTNHSDSPH-----QNPKPVK 105

Query:   121 PRRHIPQSSERTLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVD 180
             PRR+IPQ+SER LDAP            WGS+NVLAIALG TVYLWDAS G+TSELVT+D
Sbjct:   106 PRRYIPQNSERVLDAPGLRDDFSLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVTID 165

Query:   181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT 240
             ++ GPVTS+NW  DG  +A+GL+N +VQLWD  +NRQ+RTLRGGH SRVGSLAW+NHILT
Sbjct:   166 EDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSNRQVRTLRGGHESRVGSLAWDNHILT 225

Query:   241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300
             TGGMDG I+NNDVR+R  IVETY GH +EVCGLKWS SG + ASGGNDN++HIWDRS+AS
Sbjct:   226 TGGMDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLAS 285

Query:   301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS 360
             S    QWLHR EEHT+AV+A+AWCPFQ++LLATGGG GD  IKFWNTHTGACLNSV+TGS
Sbjct:   286 SKQTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGS 345

Query:   361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420
             QVC+LLW+++ERELLSSHGFTQNQLTLWKYPSM KMAEL+GHTSRVLFMAQSP+GCTVAS
Sbjct:   346 QVCSLLWSQSERELLSSHGFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVAS 405

Query:   421 AAADETLRFWNVFGAP-QVISKSAPKPNREPFAQLNRIR 458
             AA DE LR WNVFG P +   K+A K   E F+ +N +R
Sbjct:   406 AAGDENLRLWNVFGEPPKTTKKAASKKYPELFSHVNSLR 444

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2144372 CDC20.3 "AT5G27080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1537 (546.1 bits), Expect = 9.9e-158, P = 9.9e-158
 Identities = 296/449 (65%), Positives = 345/449 (76%)

Query:    12 CPLQEQFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYR 71
             C + + FL RK SK+NLDRFIPNRSAMDFD+A+Y +T+GRK   +     + S S++AY 
Sbjct:     6 CTVPDHFLPRKLSKQNLDRFIPNRSAMDFDFANYALTQGRKRNVDE----ITSASRKAYM 61

Query:    72 KQLAEVFNMNRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPRRHIPQSSER 131
              QLA V N NRTRILAF+NKP     L+   H          Q  K  KPRR+IPQ+SER
Sbjct:    62 TQLAVVMNQNRTRILAFRNKPKA---LLSSNHSDSPH-----QNPKSVKPRRYIPQNSER 113

Query:   132 TLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNW 191
              LDAP            WGS+NVLAIALG TVYLWDAS G+TSELVT+D++ GPVTS+NW
Sbjct:   114 VLDAPGLMDDFYLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVTIDEDKGPVTSINW 173

Query:   192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINN 251
               DG  +A+GL+N +VQLWD  +NRQ+RTL GGH SRVGSLAWNNHILTTGGMDG I+NN
Sbjct:   174 TQDGLDLAVGLDNSEVQLWDFVSNRQVRTLIGGHESRVGSLAWNNHILTTGGMDGKIVNN 233

Query:   252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-RSMASSNSVTQWLHR 310
             DVR+R  IV TY GH +EVCGLKWS SG++LASGGN N++HIWD RS+ASS    QWLHR
Sbjct:   234 DVRIRSSIVGTYLGHTEEVCGLKWSESGKKLASGGNYNVVHIWDHRSVASSKPTRQWLHR 293

Query:   311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKN 370
              EEHT+AV+A+AWCPFQ+ LLATGGG GD  IKFWNTHTGACLNSV+TGSQVC+LLW++ 
Sbjct:   294 FEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLLWSQR 353

Query:   371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
             ERELLSSHGFTQNQLTLWKYPSM KMAEL+GHTSRVLFMAQSP+GCTVASAA DE LR W
Sbjct:   354 ERELLSSHGFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLW 413

Query:   431 NVFGAPQVISKSAPKPNR-EPFAQLNRIR 458
             NVFG P   +K A   N  E F+ +N +R
Sbjct:   414 NVFGEPPKTTKKAASKNYLELFSHVNSLR 442

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2143636 CDC20.5 "AT5G27570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
 Identities = 290/423 (68%), Positives = 333/423 (78%)

Query:    38 MDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMNRTRILAFKNKPPTPVE 97
             MDFD+A+Y +T+GRK   +     V S S++AY  QLAE  N NRTRILAF+NKP     
Sbjct:     1 MDFDFANYALTQGRKRNVDE----VTSASRKAYMTQLAEAMNQNRTRILAFRNKPKA--- 53

Query:    98 LIPEMHXXXXXXXXXVQQAKLNKPRRHIPQSSERTLDAPXXXXXXXXXXXXWGSSNVLAI 157
             L+   H          QQ    KPRR+IPQ+SER LDAP            WGSSNVLAI
Sbjct:    54 LLSSNHSDPPH-----QQPISVKPRRYIPQNSERVLDAPGIADDFYLNLLDWGSSNVLAI 108

Query:   158 ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ 217
             ALG TVYLWDAS G+T +LVT+D+E GPVTS+NW  DG  +AIGL+N +VQLWD  +NRQ
Sbjct:   109 ALGDTVYLWDASSGSTYKLVTIDEEEGPVTSINWTQDGLDLAIGLDNSEVQLWDCVSNRQ 168

Query:   218 LRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA 277
             +RTLRGGH SRVGSLAWNNHILTTGGMDG I+NNDVR+R  IVETY GH +EVCGLKWS 
Sbjct:   169 VRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSE 228

Query:   278 SGQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336
             SG++LASGGNDN++HIWD RS+ASSN   QWLHR EEHT+AV+A+AWCPFQ++LLATGGG
Sbjct:   229 SGKKLASGGNDNVVHIWDHRSVASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGG 288

Query:   337 GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM 396
              GD  IKFWNTHTGACLNSV+TGSQVC+LLW+K+ERELLSSHGFTQNQLTLWKYPSMVKM
Sbjct:   289 VGDGKIKFWNTHTGACLNSVETGSQVCSLLWSKSERELLSSHGFTQNQLTLWKYPSMVKM 348

Query:   397 AELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP-QVISKSAPKPNREPFAQLN 455
             AEL+GHTSRVLFMAQSPDGCTVASAA DETLR WNVFG P +   K+A K   +PFA +N
Sbjct:   349 AELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTDPFAHVN 408

Query:   456 RIR 458
              IR
Sbjct:   409 HIR 411

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:505006640 AT5G27945 "AT5G27945" [Arabidopsis thaliana (taxid:3702)]

 Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
 Identities = 227/301 (75%), Positives = 260/301 (86%)

Query:   159 LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218
             LG TVYLWDAS   TS+LVT+DDENGPVTS+NW  DG  +A+GL+N +VQ+WD  +NR +
Sbjct:   128 LGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHV 187

Query:   219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278
             RTLRGGH SRVGSLAWNNHILTTGGMDG I+NNDVR+R  I+ TY GH +EVCGLKWS S
Sbjct:   188 RTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSES 247

Query:   279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG 338
             G++LASGGNDN++HIWDRS+ASSN   QWLHR EEHT+AV+A+AWCPFQ++LLATGGG G
Sbjct:   248 GKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVG 307

Query:   339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398
             D  I FWNTHTGACLNSV+TGSQVC+LLW+K+ERELLS+HGFTQNQLTLWKYPSMVKMAE
Sbjct:   308 DGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAE 367

Query:   399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP-QVISKSAPKPNREPFAQLNRI 457
             L+GHTSRVLFMAQSPDGCTVASAA DETLR WNVFG P +   K+A K   EPFA +N I
Sbjct:   368 LNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHI 427

Query:   458 R 458
             R
Sbjct:   428 R 428

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285601 cdc20 "cdc20/fizzy domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 979 (349.7 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 201/416 (48%), Positives = 266/416 (63%)

Query:    24 SKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMN-R 82
             +KEN +   PN +A++ + +    T       NN   ++    K+    QL E  + +  
Sbjct:    65 TKENSN---PNPNAINNNSSTSTSTTATSSTTNNIESTLY---KDTLANQLFESNSGDLE 118

Query:    83 TRILAFKNKPP-----TPVELIPEMHXXXXXXXXXVQQAKLNKPRRHIPQSSERTLDAPX 137
             ++IL+FK+K P     +    +  ++           Q+ L K  R IPQ  ER LDAP 
Sbjct:   119 SKILSFKSKAPVGNVSSSTNSLRVLYSQNQVGSTPTDQS-LKKQFRQIPQQPERILDAPD 177

Query:   138 XXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH 197
                        W S NV+AI LG TVYLW+A+      L  V+ ++  +TS+ W  DG +
Sbjct:   178 IVDDYYLNLLDWSSQNVIAIPLGQTVYLWNATTSEIQRLFQVEQQDDYITSLQWTKDGNY 237

Query:   198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD 257
             +A+G N+C +QLWD    +++R LRG H  RVG+LAWN++IL++G  D  I N+DVRV++
Sbjct:   238 LAVGTNSCTIQLWDVAHTKKVRELRG-HAGRVGALAWNDYILSSGSSDTNIFNHDVRVQN 296

Query:   258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
             H V T  GH+QEVCGLKWS  G QLASGGNDN+++IWD  + S N  T   H  E+HT+A
Sbjct:   297 HHVSTLSGHSQEVCGLKWSHDGGQLASGGNDNIINIWD--INSENFETP-AHTFEQHTAA 353

Query:   318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
             V+A+AWCPFQ NLLATGGG  DR I+FWNT TG CLN+VDT SQVC++ W+   REL+SS
Sbjct:   354 VRALAWCPFQPNLLATGGGAADRTIRFWNTITGVCLNTVDTMSQVCSIQWSTTYRELVSS 413

Query:   378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
             HG++QNQL +WKYPSMVK AEL+GHTSR L  A SPDG TV SA+ADETLRFW VF
Sbjct:   414 HGYSQNQLCVWKYPSMVKCAELTGHTSRALHTAISPDGETVVSASADETLRFWRVF 469

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

FB|FBgn0001086 fzy "fizzy" [Drosophila melanogaster (taxid:7227)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 196/430 (45%), Positives = 275/430 (63%)

Query:    29 DRFIPNRSAMDFDYAHYMVTE--GRK-DKENNQAMSV--------CSPSKEAYRKQLAEV 77
             DRFIPNR+A +F+ AH++V +  G K D+EN++A S          S  K   +K ++EV
Sbjct:    87 DRFIPNRAATNFELAHFLVNKDSGDKSDEENDKATSSNSNESNVQASAHKGDRQKLISEV 146

Query:    78 FNMNRT---RILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNKP-RRHIPQSSERTL 133
               +  +   RIL ++NK P      PE H         ++     K   R+IP +SER L
Sbjct:   147 AQVGDSKGGRILCYQNKAPAA----PETHNNPLKVVYSIKTPISTKSGSRYIPTTSERIL 202

Query:   134 DAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP 193
             DAP            W + N++A+ALGS VYLW+A  G   +L T  +E     S++W  
Sbjct:   203 DAPDFINDYYLNLMDWSADNIVAVALGSCVYLWNAQTGNIEQL-TEFEEGDYAGSLSWIQ 261

Query:   194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDV 253
             +G+ +AIG +   V+LWD +  ++LR +  GH +RVGSLAWN+ ++++G  DG I+++DV
Sbjct:   262 EGQILAIGNSTGAVELWDCSKVKRLRVM-DGHSARVGSLAWNSFLVSSGSRDGTIVHHDV 320

Query:   254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
             R R+H + T  GH QEVCGLKWS   + LASGGNDNL+++W  +     + T  LH+  +
Sbjct:   321 RAREHKLSTLSGHTQEVCGLKWSTDFKYLASGGNDNLVNVWSAASGGVGTATDPLHKFND 380

Query:   314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373
             H +AV+A+AWCP+Q + LA+GGG  DRCIKFWN + G  + SVD+ SQVC+LL++++ +E
Sbjct:   381 HQAAVRALAWCPWQPSTLASGGGTADRCIKFWNVNNGTLMKSVDSKSQVCSLLFSRHYKE 440

Query:   374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
             L+S+HGF  NQLT+WKYP+MVK A+L+GHTSRVL MA SPDG TV SA ADETLR WN F
Sbjct:   441 LISAHGFANNQLTIWKYPTMVKQADLTGHTSRVLQMAMSPDGSTVISAGADETLRLWNCF 500

Query:   434 GAPQVISKSA 443
                 + SK A
Sbjct:   501 APDPLASKKA 510

GO:0008054 "cyclin catabolic process" evidence=IMP;IDA

GO:0005813 "centrosome" evidence=IDA;TAS

GO:0005819 "spindle" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IMP

GO:0000776 "kinetochore" evidence=IDA;TAS

GO:0007096 "regulation of exit from mitosis" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030162 "regulation of proteolysis" evidence=TAS

GO:0007049 "cell cycle" evidence=IMP

GO:0009987 "cellular process" evidence=IMP

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS;IDA

GO:0005680 "anaphase-promoting complex" evidence=ISS;IDA

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007147 "female meiosis II" evidence=IMP

GO:0007144 "female meiosis I" evidence=IGI

GO:0051488 "activation of anaphase-promoting complex activity" evidence=ISS

GO:0007067 "mitosis" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5ZI36 CDC20 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 195/449 (43%), Positives = 268/449 (59%)

Query:     3 AGSMKAESRCPLQE-QFLQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMS 61
             +GS K  S+ P +    +Q   +K   DR+IPNRS M  + A++++T     KEN+ A +
Sbjct:    59 SGS-KTPSKTPGKSGSKVQSTPTKAGGDRYIPNRSTMQMEMANFLLT-----KENDPAEN 112

Query:    62 VCSPSKEAYRKQLA---EVFNMNRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKL 118
               SP+K+  +K  A     F++   +IL    KP    E     +            A  
Sbjct:   113 --SPTKKEQQKSWAMNLNGFDVEEAKILRLSGKPQNAPE--GYQNNLKVLYSQKTTPASS 168

Query:   119 NKPRRHIPQSSERTLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVT 178
              K  R+IP   +R LDAP            W S N LA+AL + VYLW+ S G   +L+ 
Sbjct:   169 RKHGRYIPSMPDRILDAPEIRNDYYLNLIDWSSQNFLAVALDNCVYLWNHSTGEIIQLLQ 228

Query:   179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHI 238
             +++ +  V+SV+W  +G ++A+G  N +VQLWD    ++LR++   H SRVGSL+WN++I
Sbjct:   229 IENPDDYVSSVSWIKEGNYLAVGTRNAEVQLWDVQQQKRLRSMTS-HSSRVGSLSWNSYI 287

Query:   239 LTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298
             L++G   G I ++DVRV +H V T  GH QEVCGLKWS  G+ LASGGNDNL++IW    
Sbjct:   288 LSSGSRTGHIHHHDVRVAEHHVATLTGHTQEVCGLKWSLDGRYLASGGNDNLVNIWPSVQ 347

Query:   299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358
               S   T  +    +H  AVKA+AWCP+QSN+LATGGG  DR I+ WN  +G CL++VD 
Sbjct:   348 GDSGDFTP-VQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGTCLSAVDA 406

Query:   359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
              SQVC++LW+   +E +S HGF QNQL +WKYP+M K+ EL GHT+RVL +  SPDG TV
Sbjct:   407 HSQVCSILWSTTYKEFISGHGFAQNQLVIWKYPTMAKVTELRGHTARVLNLTMSPDGVTV 466

Query:   419 ASAAADETLRFWNVFGAPQVISKSAPKPN 447
             ASAAADETLR W  F    +  K   K N
Sbjct:   467 ASAAADETLRLWRCFEMDPIKKKEKEKAN 495

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031915 "positive regulation of synaptic plasticity" evidence=IEA

GO:0040020 "regulation of meiosis" evidence=IEA

GO:0051488 "activation of anaphase-promoting complex activity" evidence=IEA

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

UNIPROTKB|Q12834 CDC20 "Cell division cycle protein 20 homolog" [Homo sapiens (taxid:9606)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 183/418 (43%), Positives = 258/418 (61%)

Query:    19 LQRKNSKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA--- 75
             +Q   SK   DR+IP+RSA   + A +++++     EN+Q     +P+K+ ++K  A   
Sbjct:    67 VQTTPSKPGGDRYIPHRSAAQMEVASFLLSK-ENQPENSQ-----TPTKKEHQKAWALNL 120

Query:    76 EVFNMNRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPRRHIPQSSERTLDA 135
               F++   +IL    KP    E     +                K  R+IP   +R LDA
Sbjct:   121 NGFDVEEAKILRLSGKPQNAPE--GYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDA 178

Query:   136 PXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG 195
             P            W S NVLA+AL ++VYLW AS G   +L+ ++     ++SV W  +G
Sbjct:   179 PEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG 238

Query:   196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRV 255
              ++A+G ++ +VQLWD    ++LR +   H +RVGSL+WN++IL++G   G I ++DVRV
Sbjct:   239 NYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRV 297

Query:   256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315
              +H V T  GH+QEVCGL+W+  G+ LASGGNDNL+++W  +      V   L    +H 
Sbjct:   298 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQ 355

Query:   316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL 375
              AVKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + +EL+
Sbjct:   356 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI 415

Query:   376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
             S HGF QNQL +WKYP+M K+AEL GHTSRVL +  SPDG TVASAAADETLR W  F
Sbjct:   416 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 473

GO:0051301 "cell division" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0040020 "regulation of meiosis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050773 "regulation of dendrite development" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0051488 "activation of anaphase-promoting complex activity" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0090129 "positive regulation of synapse maturation" evidence=ISS

GO:0031915 "positive regulation of synaptic plasticity" evidence=ISS

GO:0005819 "spindle" evidence=TAS

GO:0007049 "cell cycle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54MZ3	CDC20_DICDI	No assigned EC number	0.5104	0.8689	0.7975	yes	no
O94423	MFR1_SCHPO	No assigned EC number	0.4168	0.8668	0.9429	yes	no
Q9JJ66	CDC20_MOUSE	No assigned EC number	0.4502	0.8733	0.8016	yes	no
Q62623	CDC20_RAT	No assigned EC number	0.4526	0.8733	0.8016	yes	no
Q5H7C0	CDC20_PIG	No assigned EC number	0.4573	0.8733	0.8016	yes	no
Q12834	CDC20_HUMAN	No assigned EC number	0.4597	0.8733	0.8016	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-39
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  158 bits (399), Expect = 3e-43
 Identities = 85/298 (28%), Positives = 146/298 (48%), Gaps = 12/298 (4%)

Query: 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQ 208
           G       +L  T+ LWD   G    L T+     PV+S+ ++PDG  +     ++  ++
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 209 LWDSTANRQLRTLRGGHRSR-VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN 267
           LWD +  + LR+   GH    V S + +  +L +G  DG I   D+R    ++ T  GH+
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327
             V  + +S  G+ LASG +D  + +WD               L+ H   V ++++ P  
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWD----LETGKLLSSLTLKGHEGPVSSLSFSPDG 340

Query: 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387
           S L++  GG  D  I+ W+  TG  L +++  S V ++ ++ + R  + S G T   + L
Sbjct: 341 SLLVS--GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR--VVSSGSTDGTVRL 396

Query: 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK 445
           W   +   +  L GHTSRV  +  SPDG ++AS ++D T+R W++  + + +S S   
Sbjct: 397 WDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  143 bits (362), Expect = 2e-39
 Identities = 82/273 (30%), Positives = 130/273 (47%), Gaps = 18/273 (6%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
           T+ +WD   G     +      GPV  V  + DG ++A G ++  ++LWD      +RTL
Sbjct: 32  TIKVWDLETGELLRTLKG--HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89

Query: 222 RGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
            G H S V S+A+  +  IL++   D  I   DV     +  T RGH   V  + +S  G
Sbjct: 90  TG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDG 147

Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339
             +AS   D  + +WD     +      +  L  HT  V ++A+ P    LL+      D
Sbjct: 148 TFVASSSQDGTIKLWD---LRTGKC---VATLTGHTGEVNSVAFSPDGEKLLS---SSSD 198

Query: 340 RCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398
             IK W+  TG CL ++    + V ++ ++ +   LL+S G     + +W   +   +  
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLAS-GSEDGTIRVWDLRTGECVQT 256

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           LSGHT+ V  +A SPDG  +AS +AD T+R W+
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  128 bits (323), Expect = 7e-34
 Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 18/254 (7%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
            G VT V ++PDG+ +A G  +  +++WD      LRTL+G H   V  +A   +   L 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLA 67

Query: 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300
           +G  D  I   D+      V T  GH   V  + +S  G+ L+S   D  + +WD  + +
Sbjct: 68  SGSSDKTIRLWDLE-TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--VET 124

Query: 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG- 359
              +T     L  HT  V ++A+ P     +A      D  IK W+  TG C+ ++ TG 
Sbjct: 125 GKCLT----TLRGHTDWVNSVAFSPD-GTFVA--SSSQDGTIKLWDLRTGKCVATL-TGH 176

Query: 360 -SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
             +V ++ ++ +  +LLSS   +   + LW   +   +  L GH + V  +A SPDG  +
Sbjct: 177 TGEVNSVAFSPDGEKLLSS--SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 419 ASAAADETLRFWNV 432
           AS + D T+R W++
Sbjct: 235 ASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (286), Expect = 1e-28
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 16/218 (7%)

Query: 218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKW 275
            RTL+G H   V  +A++    +L TG  DG I   D+     ++ T +GH   V  +  
Sbjct: 2   RRTLKG-HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAA 59

Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
           SA G  LASG +D  + +WD            +  L  HTS V ++A+ P     + +  
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGEC------VRTLTGHTSYVSSVAFSP--DGRILSSS 111

Query: 336 GGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394
              D+ IK W+  TG CL ++      V ++ ++ +   + SS       + LW   +  
Sbjct: 112 SR-DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRTGK 168

Query: 395 KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
            +A L+GHT  V  +A SPDG  + S+++D T++ W++
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  115 bits (287), Expect = 7e-28
 Identities = 90/318 (28%), Positives = 149/318 (46%), Gaps = 25/318 (7%)

Query: 127 QSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGS-----TVYLWDASDGTTSELVTVDD 181
            + E+ + + + + D  ++ L   S +  +I L S     TV LWD        + T++ 
Sbjct: 95  DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD-LSTPGKLIRTLEG 153

Query: 182 ENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNH 237
            +  VTS+ ++PDG+ +A G   +  ++LWD    + L TL  GH   V SLA+      
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGL 212

Query: 238 ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
           ++ +G  DG I   D+     +  T  GH+  V    +S  G  LASG +D  + +WD  
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD-- 269

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LN 354
                S +  L  L  H+S+V ++A+ P    LLA+  G  D  ++ W+  TG     L 
Sbjct: 270 ---LRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLAS--GSSDGTVRLWDLETGKLLSSLT 323

Query: 355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
                  V +L ++ +   L+S        + LW   +   +  L GH S VL ++ SPD
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGS-DDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPD 381

Query: 415 GCTVASAAADETLRFWNV 432
           G  V+S + D T+R W++
Sbjct: 382 GRVVSSGSTDGTVRLWDL 399

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  111 bits (277), Expect = 2e-26
 Identities = 77/265 (29%), Positives = 129/265 (48%), Gaps = 19/265 (7%)

Query: 177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLRGGHRSRVGSLAWN 235
           + +      +TS+ ++PDG  +  G ++  ++LWD       +++L G H S V  LA +
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 236 NH-----ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN 289
           +      +L +  +DG +   D+     ++ T  GH++ V  L +S  G+ LASG + D 
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349
            + +WD            L  L  HT  V ++A+ P    L+A+  G  D  I+ W+  T
Sbjct: 179 TIKLWDLRTGKP------LSTLAGHTDPVSSLAFSPDGGLLIAS--GSSDGTIRLWDLST 230

Query: 350 GACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM-AELSGHTSRVL 407
           G  L S  +G S      ++ +   L S  G +   + LW   S   +   LSGH+S VL
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSPDGSLLAS--GSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 408 FMAQSPDGCTVASAAADETLRFWNV 432
            +A SPDG  +AS ++D T+R W++
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 8/221 (3%)

Query: 215 NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK 274
           ++ L+    G      SL       +   +  L+ ++ V + D      RGH   +  + 
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIA 72

Query: 275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334
           +S  G+ L SG +D  + +WD      N           H S+V  +A      N +   
Sbjct: 73  FSPDGELLLSGSSDGTIKLWD----LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128

Query: 335 GGGGDRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQNQLTLWKYPS 392
               D  +K W+  T   L     G    V +L ++ + + L S        + LW   +
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD-GTIKLWDLRT 187

Query: 393 MVKMAELSGHTSRVLFMAQSPDG-CTVASAAADETLRFWNV 432
              ++ L+GHT  V  +A SPDG   +AS ++D T+R W++
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 3e-15
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 16/228 (7%)

Query: 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI 200
           D  ++      S + + +   T+ LWD    + S L T+   +  V SV ++PDG+ +A 
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 201 GLNNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVR 256
           G ++  V+LWD    + L +L   GH   V SL+++   + +++ G  DG I   D+R  
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316
             +       N  V  + +S  G+ ++SG  D  + +WD S  S       L  L+ HTS
Sbjct: 362 KPLKTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL------LRNLDGHTS 413

Query: 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364
            V ++ + P     LA+G    D  I+ W+  T     S     +V A
Sbjct: 414 RVTSLDFSP-DGKSLASGSS--DNTIRLWDLKTSLKSVSFSPDGKVLA 458

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
           ++ T +GH   V  + +S  G  LASG +D  + +WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
           ++T +GH   V  + +S  G+ LASG +D  + +WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
              +  L GHT  V  +A SPDG  +AS + D T+R W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 27/209 (12%)

Query: 248 IINNDVRVRDHIVETYRGHNQEVCGLKW-SASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306
           II +   +   +VE       ++ G+ W S    Q+AS   + ++ +WD  +A S  VT+
Sbjct: 515 IIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD--VARSQLVTE 570

Query: 307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL 366
               ++EH   V +I +      LLA+G   G   +K W+ + G  + ++ T + +C + 
Sbjct: 571 ----MKEHEKRVWSIDYSSADPTLLASGSDDGS--VKLWSINQGVSIGTIKTKANICCVQ 624

Query: 367 WNKNERELLS----SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422
           +       L+     H      L   K P    +  + GH+  V ++ +  D  T+ S++
Sbjct: 625 FPSESGRSLAFGSADHKVYYYDLRNPKLP----LCTMIGHSKTVSYV-RFVDSSTLVSSS 679

Query: 423 ADETLRFWNVFGAPQVISKSAPKPNREPF 451
            D TL+ W+       +S S    N  P 
Sbjct: 680 TDNTLKLWD-------LSMSISGINETPL 701

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           S   +  L GHT  V  +A SPDG  +AS + D T++ W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346
           L  L+ HT  V ++A+ P   NLLA+  G  D  ++ W+
Sbjct: 4   LRTLKGHTGPVTSVAFSP-DGNLLAS--GSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN 346
           L  L+ HT  V ++A+ P     LA+  G  D  IK W+
Sbjct: 5   LKTLKGHTGPVTSVAFSP-DGKYLAS--GSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
             L T+    GPVTSV ++PDG  +A G ++  V++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
           +   L T+    GPVTSV ++PDG+++A G ++  ++LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.98
PTZ00421	493	coronin; Provisional	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
PTZ00421	493	coronin; Provisional	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG2096	420	consensus WD40 repeat protein [General function pr	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
KOG1334	559	consensus WD40 repeat protein [General function pr	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.6
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.53
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.53
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.49
PRK04792	448	tolB translocation protein TolB; Provisional	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.48
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.44
PRK00178	430	tolB translocation protein TolB; Provisional	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.39
KOG4547	541	consensus WD40 repeat-containing protein [General	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.32
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
KOG4227	609	consensus WD40 repeat protein [General function pr	99.31
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.25
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.22
KOG2315	566	consensus Predicted translation initiation factor	99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.16
KOG2314	698	consensus Translation initiation factor 3, subunit	99.13
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.08
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.07
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.06
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.06
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.99
PRK04043	419	tolB translocation protein TolB; Provisional	98.99
COG4946	668	Uncharacterized protein related to the periplasmic	98.98
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.98
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.97
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.93
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.77
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.76
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.75
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.71
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.69
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.67
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.66
PRK02888	635	nitrous-oxide reductase; Validated	98.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.63
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.62
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.61
KOG2695	425	consensus WD40 repeat protein [General function pr	98.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.6
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.58
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.54
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.52
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.51
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.48
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.45
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.44
KOG3621	726	consensus WD40 repeat-containing protein [General	98.4
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.4
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.4
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.36
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.35
PRK02888	635	nitrous-oxide reductase; Validated	98.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.27
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.23
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.23
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.1
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.1
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.03
COG3391	381	Uncharacterized conserved protein [Function unknow	98.03
COG3391	381	Uncharacterized conserved protein [Function unknow	97.95
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.91
KOG3621	726	consensus WD40 repeat-containing protein [General	97.87
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.83
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.79
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.77
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.77
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.74
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.73
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.48
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.46
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.42
PHA02713	557	hypothetical protein; Provisional	97.41
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.4
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.36
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.34
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.32
PHA02713	557	hypothetical protein; Provisional	97.29
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.28
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.27
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.25
KOG2395	644	consensus Protein involved in vacuole import and d	97.17
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.13
PRK13616	591	lipoprotein LpqB; Provisional	97.11
PRK13616	591	lipoprotein LpqB; Provisional	97.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.76
KOG2395	644	consensus Protein involved in vacuole import and d	96.75
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.73
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.7
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.7
KOG2444	238	consensus WD40 repeat protein [General function pr	96.69
PHA03098	534	kelch-like protein; Provisional	96.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.69
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.56
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.53
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.53
COG5276	370	Uncharacterized conserved protein [Function unknow	96.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.49
KOG2444	238	consensus WD40 repeat protein [General function pr	96.32
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.32
PRK10115	686	protease 2; Provisional	96.31
PHA03098	534	kelch-like protein; Provisional	96.25
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.21
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.83
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.67
PHA02790	480	Kelch-like protein; Provisional	95.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.54
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.51
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.29
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.26
KOG2247	615	consensus WD40 repeat-containing protein [General	95.23
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	95.22
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.15
PRK10115	686	protease 2; Provisional	95.11
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.07
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.95
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.89
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.88
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.85
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.8
PRK13684	334	Ycf48-like protein; Provisional	94.68
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.62
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.52
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.25
COG5167	776	VID27 Protein involved in vacuole import and degra	94.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.11
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.08
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.72
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	93.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.66
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	93.59
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.28
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.24
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.21
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.97
PLN02193	470	nitrile-specifier protein	92.89
COG5276	370	Uncharacterized conserved protein [Function unknow	92.85
KOG2247	615	consensus WD40 repeat-containing protein [General	92.83
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.7
PHA02790	480	Kelch-like protein; Provisional	92.62
PRK13684	334	Ycf48-like protein; Provisional	92.58
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.54
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.46
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.41
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.35
PLN02153	341	epithiospecifier protein	92.32
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.3
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.3
COG5167	776	VID27 Protein involved in vacuole import and degra	92.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.13
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.13
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.98
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.88
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.58
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.32
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.24
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.88
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.81
PLN02153	341	epithiospecifier protein	90.59
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.59
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.32
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.74
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	89.71
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.17
COG4590	733	ABC-type uncharacterized transport system, permeas	88.92
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	88.45
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.18
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.16
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.95
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.81
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.41
PLN02193	470	nitrile-specifier protein	87.37
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.11
COG4590	733	ABC-type uncharacterized transport system, permeas	87.11
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.53
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.08
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.66
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.15
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.96
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.82
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.7
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.66
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.58
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.16
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	83.99
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.26
PLN00033	398	photosystem II stability/assembly factor; Provisio	82.16
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	81.8
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	81.78
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	81.71
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.36

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-66  Score=495.09  Aligned_cols=422  Identities=52%  Similarity=0.888  Sum_probs=346.3

Q ss_pred             CCCCCCceeccCCCC-CCccccccceec---CCCCccccccccCCCccHHHHHHHHHHHhC-----------------CC
Q 012679           23 NSKENLDRFIPNRSA-MDFDYAHYMVTE---GRKDKENNQAMSVCSPSKEAYRKQLAEVFN-----------------MN   81 (458)
Q Consensus        23 ~~~~~~dr~ip~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~   81 (458)
                      ++....|||||.|.. .+++..++.+.+   .......+.    .....+.+...+...+.                 .+
T Consensus        41 ~~~~~~~rf~P~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~  116 (484)
T KOG0305|consen   41 PSSKVGDRFIPSRLSSEEFNRNFKYIGSFSRPNKRSALDT----GRESSSLAASLLRSELFKSNKITSEQSLRALPDEPN  116 (484)
T ss_pred             cccccCCccCCcccchhhcccccccccccccccccccccc----ccccchhhhhhhhhhhhccCccchhhhhhhccCCcc
Confidence            555667999999988 577776665443   111000000    00111122222222211                 22


Q ss_pred             CCceeeccCCCCCCCcCCCCcCCCcccCCcccc-ccccCCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcC
Q 012679           82 RTRILAFKNKPPTPVELIPEMHSSSASASSSVQ-QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALG  160 (458)
Q Consensus        82 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d  160 (458)
                      ..|||.|+..++.+...........+....+.. ...+++..|+++..|+++||||++.+|||+|.++|+..++++++++
T Consensus       117 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg  196 (484)
T KOG0305|consen  117 RDRILTYKSKAPRPRSRTQEPDSVYPSAESSIRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALG  196 (484)
T ss_pred             ccceeEecccCCCCccccccccccccccccccccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEec
Confidence            279999998877642222222211111111111 1235778899999999999999999999999999999999999999


Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT  240 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~  240 (458)
                      ..||+|+..++.+..++.+.  ...|+++.|+++|.+||+|..+|.|.|||..+.+.++.+...|..+|.+++|++..+.
T Consensus       197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~ls  274 (484)
T KOG0305|consen  197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLS  274 (484)
T ss_pred             ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEE
Confidence            99999999999988888775  7889999999999999999999999999999999999999879999999999999999


Q ss_pred             EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeE
Q 012679          241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA  320 (458)
Q Consensus       241 sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  320 (458)
                      +|+.+|.|.++|++..+..+..+.+|.++||+++|++|+++||+|++|+.+.|||......      +..+..|.++|++
T Consensus       275 sGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p------~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP------KFTFTEHTAAVKA  348 (484)
T ss_pred             EecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc------cEEEeccceeeeE
Confidence            9999999999999998887777889999999999999999999999999999999966555      7889999999999


Q ss_pred             EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679          321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      ++|||+...+||+|+|+.|++|++||+.+|+.+..+.++++|+++.|++..++|++++|+.++.|.||++++.+++..+.
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~  428 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL  428 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCCCCCccccccccC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNRIR  458 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ir  458 (458)
                      +|..+|.+++++|||..+++|+.|++++||++++..+....  .......+..+..||
T Consensus       429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~~--~~~~~s~~~~~~~iR  484 (484)
T KOG0305|consen  429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKSTK--KKENTSVLSLTSGIR  484 (484)
T ss_pred             CCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCcccc--ccccccccccccccC
Confidence            99999999999999999999999999999999987433322  123334444444444

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.4e-44  Score=316.87  Aligned_cols=286  Identities=24%  Similarity=0.413  Sum_probs=247.5

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+-++.|++  ..+++++.|.++++||+.+...  ++++++|...|.||+|+|||+.||+|+.||.|++||.++++++..
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~  194 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR  194 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc
Confidence            345567766  6799999999999999998876  889999999999999999999999999999999999999987765


Q ss_pred             ecCCCcccEEEEEeC-------CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          221 LRGGHRSRVGSLAWN-------NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~-------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      -..+|...|++|+|.       ..+|++++.||.|+|||+..+. ++..+.+|+.+|+|+.|--+ .+|++|+.|++|++
T Consensus       195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkv  272 (480)
T KOG0271|consen  195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKV  272 (480)
T ss_pred             cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCC-ceEEecCCCceEEE
Confidence            544599999999994       3689999999999999998665 47889999999999999644 48999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecC-----------C------------------------CCcEEEEeCCCC
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-----------F------------------------QSNLLATGGGGG  338 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-----------~------------------------~~~ll~s~~g~~  338 (458)
                      |+...+..      ...+++|...|+.++.+.           .                        +...+++|+  .
T Consensus       273 w~a~dG~~------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--D  344 (480)
T KOG0271|consen  273 WRALDGKL------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--D  344 (480)
T ss_pred             EEccchhH------HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--C
Confidence            99988776      788999999999998872           1                        223578876  9


Q ss_pred             CCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679          339 DRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       339 d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  416 (458)
                      |.++.+|+-...+ ++..+. +..-|+.+.|+||++++++++  -|..|++|+..+++.+.+|+||-..|..++|+.|.+
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS--FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS--FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee--cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence            9999999976543 555443 445699999999999999954  799999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCcccccC
Q 012679          417 TVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      +|++|+.|.+|++|++...+.....+
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl~~DLp  448 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKLKQDLP  448 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeeecccCC
Confidence            99999999999999998766554433

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.1e-44  Score=320.88  Aligned_cols=282  Identities=21%  Similarity=0.397  Sum_probs=254.7

Q ss_pred             CCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEE
Q 012679          135 APDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLW  210 (458)
Q Consensus       135 ~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iw  210 (458)
                      ...+.++..+..+.++.  +.+++++.+|.++||+..+...  ++++.+|...|.++.|+|.  +..+|+|+.||++++|
T Consensus       169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw  246 (459)
T KOG0272|consen  169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW  246 (459)
T ss_pred             hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence            44555666676677765  6799999999999999998855  8899999999999999996  6789999999999999


Q ss_pred             eCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679          211 DSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND  288 (458)
Q Consensus       211 d~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d  288 (458)
                      ++.+...+..+.+ |..+|..++|+  |++|++++.|.+-++||++++.. +....||...|.+++|++||.++++||.|
T Consensus       247 ~~~~e~~l~~l~g-H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  247 KLSQETPLQDLEG-HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             ccCCCcchhhhhc-chhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCcc
Confidence            9999999999998 99999999995  79999999999999999998875 45677999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEE
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLW  367 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~  367 (458)
                      ..-+|||++++..      +..+.+|..+|.+++|+|+ ++.+|+|+  .|++++|||++...++.++..+ .-|+.+.|
T Consensus       325 ~~~RvWDlRtgr~------im~L~gH~k~I~~V~fsPN-Gy~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  325 SLGRVWDLRTGRC------IMFLAGHIKEILSVAFSPN-GYHLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             chhheeecccCcE------EEEecccccceeeEeECCC-ceEEeecC--CCCcEEEeeecccccceecccccchhhheEe
Confidence            9999999999988      8999999999999999995 78888887  9999999999999998888655 56899999


Q ss_pred             cCC-CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          368 NKN-ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       368 s~~-~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      +|. |.+|++  +..|++++||...++.++.++.||.+.|.++++++|+++++|++.|.++++|.
T Consensus       396 ~p~~g~fL~T--asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  396 SPQEGYFLVT--ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCCeEEEE--cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            994 555555  33799999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-42  Score=305.38  Aligned_cols=279  Identities=25%  Similarity=0.492  Sum_probs=250.2

Q ss_pred             CccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEeC
Q 012679          140 DDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-----DGRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       140 ~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-----~g~~la~g~~dg~v~iwd~  212 (458)
                      .+-.+.+++|+|  ..+++++.||+|++||.++|+. .-..+.+|...|++++|.|     ..++||+++.||.|+|||+
T Consensus       156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~  234 (480)
T KOG0271|consen  156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT  234 (480)
T ss_pred             CccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence            345788999998  5689999999999999999875 3567899999999999976     6789999999999999999


Q ss_pred             CCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc-----------CCCC
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS-----------ASGQ  280 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s-----------pd~~  280 (458)
                      ..+.++..+.+ |..+|+|+.|. ..+|++|+.|++|++|+...+. +...+++|...|+.++.+           |.++
T Consensus       235 ~~~~~~~~lsg-HT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~  312 (480)
T KOG0271|consen  235 KLGTCVRTLSG-HTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR  312 (480)
T ss_pred             cCceEEEEecc-CccceEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhccccccccc
Confidence            99999999998 99999999997 5899999999999999998754 578899999999999877           2233


Q ss_pred             -------------------------EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          281 -------------------------QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       281 -------------------------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                                               .|++|+.|+++.+|+......     ++.++.+|..-|..+.|+|+ ..++|+++
T Consensus       313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSPd-~r~IASaS  386 (480)
T KOG0271|consen  313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-----PITRMTGHQALVNHVSFSPD-GRYIASAS  386 (480)
T ss_pred             cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----chhhhhchhhheeeEEECCC-ccEEEEee
Confidence                                     499999999999999765543     37788999999999999997 55667766


Q ss_pred             CCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679          336 GGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                        .|..|++||.++|+.+.++. +-..|..++|+.|.+.|++  |..|.++++|++++.+....+.||.+.|.++.|+||
T Consensus       387 --FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  387 --FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             --cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence              99999999999999999998 5578999999999999999  779999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEe
Q 012679          415 GCTVASAAADETLRFWN  431 (458)
Q Consensus       415 g~~l~s~s~Dg~i~iW~  431 (458)
                      |+.+++|+.|..+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            99999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.1e-41  Score=288.44  Aligned_cols=274  Identities=22%  Similarity=0.455  Sum_probs=248.5

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-----
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-----  215 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-----  215 (458)
                      .+.+++|++  .++++++.||.+.|||.-+........+  ....|..++|+|.|+++|+|+-|....||++.+.     
T Consensus        57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~  134 (343)
T KOG0286|consen   57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN  134 (343)
T ss_pred             ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence            366789986  6799999999999999888776444444  4788999999999999999999999999999865     


Q ss_pred             -eeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEE
Q 012679          216 -RQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLH  292 (458)
Q Consensus       216 -~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~  292 (458)
                       ...+.+.+ |.+.+.|+.| +...|++++.|.+..+||+++++. +..+.+|.+.|.++.++| +++.+++|+-|+..+
T Consensus       135 ~~v~r~l~g-HtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak  212 (343)
T KOG0286|consen  135 VRVSRELAG-HTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK  212 (343)
T ss_pred             ceeeeeecC-ccceeEEEEEcCCCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence             34455665 9999999999 788999999999999999998886 788999999999999999 999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNK  369 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~  369 (458)
                      +||++.+..      .+.|.+|...|.++.|.|+ +.-+++|+  .|++.++||++..+.+..+.+.   ..|++++|+.
T Consensus       213 lWD~R~~~c------~qtF~ghesDINsv~ffP~-G~afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  213 LWDVRSGQC------VQTFEGHESDINSVRFFPS-GDAFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             eeeccCcce------eEeecccccccceEEEccC-CCeeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence            999999987      8999999999999999996 56677766  9999999999999999888764   5699999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      .|++|++  |+.|..+.+||.-.++.+..+.||.++|.++..+|||..|+||+.|.+|+||.
T Consensus       284 SGRlLfa--gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  284 SGRLLFA--GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccEEEe--eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999  78999999999999999999999999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-38  Score=271.24  Aligned_cols=270  Identities=21%  Similarity=0.321  Sum_probs=234.9

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc
Q 012679          151 SSNVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS  227 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~  227 (458)
                      ++.++.++.|..+.+|++.....   ..+..+.+|...|..+..++||++.++++.||++++||+.+++..+.|.+ |..
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~  106 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTK  106 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe-cCC
Confidence            46788999999999999875332   23778899999999999999999999999999999999999999999988 999


Q ss_pred             cEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCC
Q 012679          228 RVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNS  303 (458)
Q Consensus       228 ~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~  303 (458)
                      .|.+++++  +..+++|++|.+|++|++.........-.++...|.|+.|+|+  ..+|++++.|++|++||+++.+.  
T Consensus       107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--  184 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--  184 (315)
T ss_pred             ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--
Confidence            99999994  6899999999999999997554322222234789999999997  78999999999999999999877  


Q ss_pred             cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                          .+.+.+|++.++.++++||| .+.++|+  .||.+.+||++.++.+..+.+...|.+++|+|+...|+++.   +.
T Consensus       185 ----~~~~~gh~~~v~t~~vSpDG-slcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at---~~  254 (315)
T KOG0279|consen  185 ----RTTFIGHSGYVNTVTVSPDG-SLCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT---AT  254 (315)
T ss_pred             ----hhccccccccEEEEEECCCC-CEEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc---CC
Confidence                77888999999999999974 5667766  99999999999999999999999999999999999988865   44


Q ss_pred             cEEEEeCCCceeeEEEe----CC-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          384 QLTLWKYPSMVKMAELS----GH-----TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~----~h-----~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      .|+|||+.+...+.++.    +.     .....+++|++||+.|+.|-.|+.|++|.+.
T Consensus       255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            59999999988877764    22     2346788999999999999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.6e-39  Score=289.69  Aligned_cols=252  Identities=25%  Similarity=0.435  Sum_probs=232.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC----CeEEEEeCCCcEEEEEccCC
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN----HILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~sg~~dg~i~vwd~~~~  256 (458)
                      +...+|..+.|+.|++.||+|+.+|.++||+..+...+.++.+ |...|.++.|++    ..+++|+.||++++|++...
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            5578999999999999999999999999999999999999998 999999999953    48999999999999999865


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      . ++..+.+|...|..++|+|+|++|++++.|.+-++||++++..      +....+|...|.+++|.|+ +.++++|| 
T Consensus       252 ~-~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E------lL~QEGHs~~v~~iaf~~D-GSL~~tGG-  322 (459)
T KOG0272|consen  252 T-PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE------LLLQEGHSKGVFSIAFQPD-GSLAATGG-  322 (459)
T ss_pred             c-chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh------hHhhcccccccceeEecCC-CceeeccC-
Confidence            4 5788999999999999999999999999999999999999887      7778899999999999997 56788877 


Q ss_pred             CCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-C
Q 012679          337 GGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-D  414 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-d  414 (458)
                       .|..-+|||+++|.++..+..+ .+|.++.|+|+|..+++  |+.|++++|||++....+.++.+|.+-|+.+.|+| .
T Consensus       323 -lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT--gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  323 -LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT--GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE  399 (459)
T ss_pred             -ccchhheeecccCcEEEEecccccceeeEeECCCceEEee--cCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence             9999999999999999998764 67999999999999999  77899999999999999999999999999999999 7


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679          415 GCTVASAAADETLRFWNVFGAPQVISKSAPK  445 (458)
Q Consensus       415 g~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~  445 (458)
                      |.+|+|++.|++++||.-.+..++.......
T Consensus       400 g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  400 GYFLVTASYDNTVKIWSTRTWSPLKSLAGHE  430 (459)
T ss_pred             CeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence            8999999999999999998888877766443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-36  Score=278.33  Aligned_cols=281  Identities=23%  Similarity=0.445  Sum_probs=252.5

Q ss_pred             CCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679          137 DLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       137 ~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~  214 (458)
                      +..+.-.+++++|+.  +.|+++..||.++||+...+.   +.++..|.++|.++.|+..|+||++++.||++.+||..+
T Consensus       231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            334445799999984  668888899999999976544   577888999999999999999999999999999999999


Q ss_pred             ceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          215 NRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       215 ~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      +...+.+.. |..+-..+.| +...+++.+.||.|+|+.+.... ++.++.+|.++|.++.|+|.|.+|++++.|++++|
T Consensus       308 g~~~q~f~~-~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  308 GTVKQQFEF-HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKI  385 (524)
T ss_pred             ceEEEeeee-ccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEe
Confidence            999998887 8888888999 67899999999999999998555 57888999999999999999999999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCC--------CcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEE
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--------SNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCA  364 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--------~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~  364 (458)
                      |.......      .+.+.+|...|..+.|+|.+        +..+++++  .|++|++||+..+.++.++ ++..+|.+
T Consensus       386 Ws~~~~~~------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  386 WSMGQSNS------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYS  457 (524)
T ss_pred             eecCCCcc------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEE
Confidence            99887766      78899999999999999865        34666666  8999999999999999999 77889999


Q ss_pred             EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++|+|+++++++  |..||.|.+|+.++++.++++.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus       458 vafS~~g~ylAs--Gs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  458 VAFSPNGRYLAS--GSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEecCCCcEEEe--cCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999  88999999999999999999875 4569999999999999999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=256.22  Aligned_cols=278  Identities=20%  Similarity=0.344  Sum_probs=235.7

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRV  229 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v  229 (458)
                      -.+++++.|.+|++|.+.+|.+  ..++....+.|..+...|+++.||+++.. .|++||+.+++  .+.++.+ |...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C--~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~-h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGIC--SRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEG-HTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeE--EEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEec-cCCce
Confidence            3478888999999999999998  66777667899999999999999998776 89999998876  5788887 99999


Q ss_pred             EEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679          230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW  307 (458)
Q Consensus       230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  307 (458)
                      +++.|  +|+.+++|+.||+++|||++...  ......|..+|+++..+|+...|++|..+|.|++||+.......    
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~----  160 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH----  160 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc----
Confidence            99999  69999999999999999999844  34455678999999999999999999999999999998876521    


Q ss_pred             eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe------eEEEe-CCCCeEEEEEcCCCCeEEEEecC
Q 012679          308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC------LNSVD-TGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       308 ~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~------~~~~~-~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                       ..+......|.+++..|+|..+.+..   ..|..++|++-+..-      +..+. +...+..+.+||++++|++++  
T Consensus       161 -~liPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s--  234 (311)
T KOG0315|consen  161 -ELIPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS--  234 (311)
T ss_pred             -ccCCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec--
Confidence             12223457899999999988777754   789999999987543      33333 356689999999999999964  


Q ss_pred             CCCcEEEEeCCCc-eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679          381 TQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK  445 (458)
Q Consensus       381 ~d~~i~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~  445 (458)
                      .|.+++||+..+. +....+++|...+...+||.||+||+||+.|+++++|++..++++......+
T Consensus       235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            8999999999998 5566789999999999999999999999999999999999998776655433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.7e-36  Score=252.54  Aligned_cols=291  Identities=21%  Similarity=0.258  Sum_probs=247.9

Q ss_pred             CCCcccCCccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecC
Q 012679          103 HSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDD  181 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~  181 (458)
                      .+++|.-....|+....+..|.|+            ..|..+|.+...+ ...++++....|++||+.+++..++.++++
T Consensus        14 vsA~YDhTIRfWqa~tG~C~rTiq------------h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   14 VSAGYDHTIRFWQALTGICSRTIQ------------HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             EeccCcceeeeeehhcCeEEEEEe------------cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence            345566566666666655555553            3456788888877 678999999999999999999889999999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCee
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI  259 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~  259 (458)
                      |...|++|.|..+|+++++|+.||+++|||++...+.+.+.  |.++|+++..+  ...|++|..+|.|++||+....+.
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence            99999999999999999999999999999999988777777  88999999995  478999999999999999987655


Q ss_pred             EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      ...+......|.++...|||.+++.+.+.|.+++|++-.........++.+++.|.+.+..+.++|++.+ ||+++  .|
T Consensus       160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~s--sd  236 (311)
T KOG0315|consen  160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCS--SD  236 (311)
T ss_pred             cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeec--CC
Confidence            5555666788999999999999999999999999999988777778889999999999999999997554 55555  89


Q ss_pred             CeEEEEECCCC-CeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679          340 RCIKFWNTHTG-ACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS  412 (458)
Q Consensus       340 ~~i~lwd~~~~-~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  412 (458)
                      .+++||++.+. +....++.+ .-+...+||.++.||++  |..|+++++|++..++.+....+|-....|++..
T Consensus       237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT--assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT--ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe--cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            99999999988 333344433 45999999999999999  5689999999999999999999999888887764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=269.16  Aligned_cols=275  Identities=23%  Similarity=0.403  Sum_probs=246.1

Q ss_pred             cceeeccCCC--eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEE
Q 012679          144 LNLLDWGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~~~--~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~  220 (458)
                      +..+-+++..  +++++.|++|++||..+|++  ...+.+|.+.|.+|+|+..|++||+++.|-.+++||..+ .++++.
T Consensus       111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks  188 (406)
T KOG0295|consen  111 VTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS  188 (406)
T ss_pred             eeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH
Confidence            4444556654  34444699999999999998  788999999999999999999999999998899999987 556666


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +.+ |...|.++.|  .|++|+++++|.+|+.||+.++.+ +.++.+|...|..+..+.||.++|++++|.+|++|-..+
T Consensus       189 ~~g-h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t  266 (406)
T KOG0295|consen  189 LIG-HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT  266 (406)
T ss_pred             hcC-cccceeeEEEEecCCeeeecccccceeEEeccccee-EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc
Confidence            666 9999999999  689999999999999999998875 899999999999999999999999999999999999998


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCC--------------CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPF--------------QSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC  363 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~--------------~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~  363 (458)
                      ...      ...+..|.-+|.+++|.|.              +..++.+++  .|++|++||+.+|.++.++.. ..-|+
T Consensus       267 ~~~------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  267 KQC------KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             chh------hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceee
Confidence            876      6778899999999999874              224677665  999999999999999999865 56799


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      .++|+|.|+||+++.  +|+++++||+.+++++.++..|..-|++++|..+..+++||+-|.++++|..
T Consensus       339 ~~af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEcCCCeEEEEEe--cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999975  8999999999999999999999999999999999999999999999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-37  Score=279.27  Aligned_cols=290  Identities=23%  Similarity=0.432  Sum_probs=248.5

Q ss_pred             ceeeeCCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679          130 ERTLDAPDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV  207 (458)
Q Consensus       130 ~~~l~~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v  207 (458)
                      .+...+.--.....++.+.|.+  .+|++++..|.+.+|+..+-..  ...+..|..+|+++.|+++|.++++|..+|.|
T Consensus        85 tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i  162 (464)
T KOG0284|consen   85 TKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMI  162 (464)
T ss_pred             cceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence            3344443334445688899988  4799999999999999754333  23356899999999999999999999999999


Q ss_pred             EEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679          208 QLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       208 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                      ++|+..-. .++.+...|...|.+++|+  ...+++++.||+|+|||...... ...+.+|.-.|.+++|+|...++|+|
T Consensus       163 KyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasg  240 (464)
T KOG0284|consen  163 KYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASG  240 (464)
T ss_pred             Eecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEc
Confidence            99996644 3455555467999999995  68999999999999999986654 56779999999999999999999999


Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEE
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCA  364 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~  364 (458)
                      |.|+.|++||.+++.+      +.++..|...|.++.|+|++ ++|++++  .|..++++|+++.+.+.++. +...+++
T Consensus       241 skDnlVKlWDprSg~c------l~tlh~HKntVl~~~f~~n~-N~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSC------LATLHGHKNTVLAVKFNPNG-NWLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTS  311 (464)
T ss_pred             cCCceeEeecCCCcch------hhhhhhccceEEEEEEcCCC-CeeEEcc--CCceEEEEehhHhHHHHHhhcchhhhee
Confidence            9999999999999988      88999999999999999987 7777776  99999999999888888887 5678999


Q ss_pred             EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +.|+|-..-|+++ |+.||.|..|.+...+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus       312 ~~WhP~~~~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  312 LTWHPLNESLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eccccccccceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            9999999988887 558999999999977766665 4799999999999999999999999999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.2e-37  Score=269.98  Aligned_cols=278  Identities=20%  Similarity=0.434  Sum_probs=241.1

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+-|+.+..+.+++|..|++|+|||..+..+  +..+.+|++.|.|+.|.  .+.|++|+.|.+|+|||+++++++.++.
T Consensus       199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c--~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC--LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             ceEEEEecchhhhcccccCceEEeccccHHH--HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHh
Confidence            4567888889999999999999999988776  77889999999999995  5699999999999999999999999998


Q ss_pred             CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      . |...|..+.|++.++++++.|..|.+||+.....  +...+.||...|+.+.|  |.+++++++.|.+|++|++.+..
T Consensus       275 h-HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~e  351 (499)
T KOG0281|consen  275 H-HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCE  351 (499)
T ss_pred             h-hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEecccee
Confidence            7 9999999999999999999999999999987652  34567899999999998  46799999999999999999987


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-eEEEEEcCCCCeEEEEec
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHG  379 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~g  379 (458)
                      .      +.++.+|...|.|+.+   ...++++|+  .|.+|++||+..|.+++.++.+.. |.++.|  +.+.+++  |
T Consensus       352 f------vRtl~gHkRGIAClQY---r~rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS--G  416 (499)
T KOG0281|consen  352 F------VRTLNGHKRGIACLQY---RDRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--G  416 (499)
T ss_pred             e------ehhhhcccccceehhc---cCeEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee--c
Confidence            7      8899999999988876   457888876  999999999999999999877654 778877  4567777  7


Q ss_pred             CCCCcEEEEeCCCce---------eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          380 FTQNQLTLWKYPSMV---------KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       380 ~~d~~i~iwd~~~~~---------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      .-||.|+|||+..+.         ++.++..|+++|..+.|  |...+++++.|.+|.|||+.++.........
T Consensus       417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~~~~r  488 (499)
T KOG0281|consen  417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAAEETR  488 (499)
T ss_pred             cccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCccccccCC
Confidence            789999999997653         34456679999999999  6678999999999999999988776544433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=256.20  Aligned_cols=284  Identities=19%  Similarity=0.285  Sum_probs=235.3

Q ss_pred             ccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +.+...++.+.+-+++++.|..-+||+..+|..  ...+.+|.+.|+++.|+.||.+||+|..+|.|+||+..++.....
T Consensus        66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~  143 (399)
T KOG0296|consen   66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK  143 (399)
T ss_pred             ceEEEEeCCCCceEEecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence            333333333334577788899999999999986  889999999999999999999999999999999999999998888


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +.. .-..+.=+.|+  +.+|++|+.||.+.+|.+..+ ...+.+.+|..++++-.|.|+|+.++++..||+|++||+.+
T Consensus       144 ~~~-e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt  221 (399)
T KOG0296|consen  144 LDQ-EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT  221 (399)
T ss_pred             eec-ccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence            874 55667777786  589999999999999999875 34788999999999999999999999999999999999988


Q ss_pred             CCCCCcce-------------------------------------eeeeec--------ccccceeEEEecCCCCc--EE
Q 012679          299 ASSNSVTQ-------------------------------------WLHRLE--------EHTSAVKAIAWCPFQSN--LL  331 (458)
Q Consensus       299 ~~~~~~~~-------------------------------------~~~~~~--------~h~~~v~~l~~~p~~~~--ll  331 (458)
                      +.......                                     .+....        .+...+.++.+.|....  |+
T Consensus       222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~  301 (399)
T KOG0296|consen  222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA  301 (399)
T ss_pred             CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence            76421100                                     000001        22233344444444333  45


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      |+|  +.||+|.|||+...+......+...|+.+.|-+ ..+|++++  .+|.|+.||.++++.+.++.||...|.++++
T Consensus       302 A~G--~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c--~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l  376 (399)
T KOG0296|consen  302 ACG--SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC--ANGKVRQWDARTGQLKFTYTGHQMGILDFAL  376 (399)
T ss_pred             hcc--cccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec--cCceEEeeeccccceEEEEecCchheeEEEE
Confidence            554  499999999999999999999999999999999 88888854  8999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecC
Q 012679          412 SPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +|++++++|+|.|++.+||++.
T Consensus       377 s~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  377 SPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.3e-35  Score=265.69  Aligned_cols=284  Identities=23%  Similarity=0.433  Sum_probs=237.0

Q ss_pred             ccceeeccC--C-CeEEEEcCCEEEEEECCCC--CeeeEEEe------c----CCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679          143 YLNLLDWGS--S-NVLAIALGSTVYLWDASDG--TTSELVTV------D----DENGPVTSVNWAPDGRHIAIGLNNCQV  207 (458)
Q Consensus       143 ~~~~~~~~~--~-~~la~~~d~~v~iwd~~~~--~~~~~~~~------~----~h~~~V~~v~~s~~g~~la~g~~dg~v  207 (458)
                      .+.+.+|+|  . .+.+++.+...++|++...  .......+      .    .....|++++|+.+|..||+|+.||.+
T Consensus       180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~  259 (524)
T KOG0273|consen  180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA  259 (524)
T ss_pred             ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence            467889998  3 4666667889999998741  11110001      1    124579999999999999999999999


Q ss_pred             EEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679          208 QLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       208 ~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                      +||+. .|.++.++.. |.++|.+|.|+  |++|++++.||++.+||..++.. ...+.-|..+-..+.|- +...|+++
T Consensus       260 riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~-~~~~F~ts  335 (524)
T KOG0273|consen  260 RIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQ-SNDEFATS  335 (524)
T ss_pred             EEEec-Cchhhhhhhc-cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEe-cCceEeec
Confidence            99995 5677778877 99999999996  68999999999999999987764 66777788887788996 45578999


Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEE
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCA  364 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~  364 (458)
                      +.|+.|+|+.+....+      +.++.+|.+.|.++.|+|. ..||++++  .|+++++|+.....+...+..+ ..|..
T Consensus       336 ~td~~i~V~kv~~~~P------~~t~~GH~g~V~alk~n~t-g~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t  406 (524)
T KOG0273|consen  336 STDGCIHVCKVGEDRP------VKTFIGHHGEVNALKWNPT-GSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYT  406 (524)
T ss_pred             CCCceEEEEEecCCCc------ceeeecccCceEEEEECCC-CceEEEec--CCCeeEeeecCCCcchhhhhhhccceee
Confidence            9999999999987766      8889999999999999994 67888887  9999999999988888887654 47999


Q ss_pred             EEEcCCCC---------eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          365 LLWNKNER---------ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       365 ~~~s~~~~---------~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +.|+|.+.         .++++  ..|++|++||+..+.+++.|..|..+|.+++|+|+|+++|+|+.||.|.+|++..+
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sa--s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~  484 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASA--SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG  484 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEe--ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence            99998753         34443  37999999999999999999999999999999999999999999999999999887


Q ss_pred             Cccccc
Q 012679          436 PQVISK  441 (458)
Q Consensus       436 ~~~~~~  441 (458)
                      +..+..
T Consensus       485 ~l~~s~  490 (524)
T KOG0273|consen  485 KLVKSY  490 (524)
T ss_pred             heeEee
Confidence            766543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-34  Score=273.40  Aligned_cols=285  Identities=18%  Similarity=0.398  Sum_probs=242.5

Q ss_pred             ccccceeeccC-CCeEEEEcC--CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679          141 DYYLNLLDWGS-SNVLAIALG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       141 d~~~~~~~~~~-~~~la~~~d--~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      +..+..+.|+. +.-+|.+..  |.+-||++.+...  +...++|...+++++++|||+++|+|+.||.|+|||..++-+
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC  384 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC  384 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence            44566677764 444444444  5999999998776  778889999999999999999999999999999999999999


Q ss_pred             eEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-cccceEeEEEcCCCCEEEEEECCC-cEEE
Q 012679          218 LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDN-LLHI  293 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg-~i~i  293 (458)
                      +.++.. |.+.|+.+.|  .++.+++.+.||+|+.||+..... .+++.. ..-...|++..|.|.++.+|+.|. .|.+
T Consensus       385 ~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  385 FVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV  462 (893)
T ss_pred             EEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence            999998 9999999999  589999999999999999986654 444443 345678899999999999998876 6999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCC
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      |++.+++.      +..+.+|.++|.+++|+|.+ .+|++++  .|++|++||+-.. ..+.++...+.+..+.|+|+|+
T Consensus       463 WS~qTGql------lDiLsGHEgPVs~l~f~~~~-~~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  463 WSVQTGQL------LDILSGHEGPVSGLSFSPDG-SLLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK  533 (893)
T ss_pred             EEeecCee------eehhcCCCCcceeeEEcccc-CeEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence            99999987      88899999999999999975 5888877  9999999998654 4677888899999999999999


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeC--------------------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSG--------------------HTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--------------------h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ++++++  .||+|.+||...+..+..+.+                    .....+.+++|+||.+|++||....|++|++
T Consensus       534 elaVaT--ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v  611 (893)
T KOG0291|consen  534 ELAVAT--LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV  611 (893)
T ss_pred             eEEEEE--ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence            999976  899999999987766644332                    1255889999999999999999999999999


Q ss_pred             CCCCcccc
Q 012679          433 FGAPQVIS  440 (458)
Q Consensus       433 ~~~~~~~~  440 (458)
                      .++..+++
T Consensus       612 ~~~vllkk  619 (893)
T KOG0291|consen  612 PEGVLLKK  619 (893)
T ss_pred             chhheeee
Confidence            88765544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-34  Score=256.03  Aligned_cols=294  Identities=22%  Similarity=0.362  Sum_probs=250.1

Q ss_pred             CCCCCCCCCCceeeeCCCCCCccccceeeccCCC--eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCE
Q 012679          120 KPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH  197 (458)
Q Consensus       120 ~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~--~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~  197 (458)
                      ++..+.|-.-.+|+..    .-..+.+++..|.+  +++++.|++++|||+.+|++  ..++.+|...|..+++|+-..|
T Consensus       134 rPeWHapwKl~rVi~g----HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpY  207 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISG----HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPY  207 (460)
T ss_pred             CccccCcceehhhhhh----ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCce
Confidence            3334444444444442    23468888888844  88888999999999999998  7889999999999999999999


Q ss_pred             EEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679          198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKW  275 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  275 (458)
                      |++++.|+.|+.||++..+.++.+.+ |-+.|.|++.++  ..|++|++|.++++||+++... +..+.+|..+|+.+.+
T Consensus       208 lFs~gedk~VKCwDLe~nkvIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEYNKVIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMC  285 (460)
T ss_pred             EEEecCCCeeEEEechhhhhHHHhcc-ccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEe
Confidence            99999999999999999999999998 999999999985  7899999999999999998875 7899999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679          276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS  355 (458)
Q Consensus       276 spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~  355 (458)
                      .|-+..+++|+.|++|++||++.++.      ...+..|...|.+++.+| ..+++|+++   -..|+-|++..|..+..
T Consensus       286 ~~~dpqvit~S~D~tvrlWDl~agkt------~~tlt~hkksvral~lhP-~e~~fASas---~dnik~w~~p~g~f~~n  355 (460)
T KOG0285|consen  286 QPTDPQVITGSHDSTVRLWDLRAGKT------MITLTHHKKSVRALCLHP-KENLFASAS---PDNIKQWKLPEGEFLQN  355 (460)
T ss_pred             ecCCCceEEecCCceEEEeeeccCce------eEeeecccceeeEEecCC-chhhhhccC---CccceeccCCccchhhc
Confidence            99899999999999999999999987      788889999999999999 478888875   44799999999998887


Q ss_pred             EeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-----C---CCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679          356 VDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-----G---HTSRVLFMAQSPDGCTVASAAADET  426 (458)
Q Consensus       356 ~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-----~---h~~~V~~l~~spdg~~l~s~s~Dg~  426 (458)
                      +..+ .-+.++..+.|+-++ +  |.++|.+.+||.+++-..+.+.     |   ....|++.+|...|..|+||..|.+
T Consensus       356 lsgh~~iintl~~nsD~v~~-~--G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt  432 (460)
T KOG0285|consen  356 LSGHNAIINTLSVNSDGVLV-S--GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT  432 (460)
T ss_pred             cccccceeeeeeeccCceEE-E--cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc
Confidence            7554 457778777776544 3  6789999999999876655442     1   2356899999999999999999999


Q ss_pred             EEEEecCC
Q 012679          427 LRFWNVFG  434 (458)
Q Consensus       427 i~iW~~~~  434 (458)
                      |++|.-.+
T Consensus       433 Ik~~keDe  440 (460)
T KOG0285|consen  433 IKMYKEDE  440 (460)
T ss_pred             eEEEeccc
Confidence            99998643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3e-33  Score=260.34  Aligned_cols=275  Identities=30%  Similarity=0.504  Sum_probs=238.7

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..+.++.|++  +.+++++.+|.|++|++.+++.  ...+..|...+..+.|+|++++|++++.+|.|++||+.+++.+.
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~   87 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR   87 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE
Confidence            3577889988  4466666799999999998775  56667888899999999999999999999999999999988888


Q ss_pred             EecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.. |...+.++.|++  .++++++.+|.|.+||+++... ...+..|...|.++.|+|++.++++++.|+.|++||++
T Consensus        88 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200          88 TLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             EEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence            8876 888999999964  7788888899999999986553 56677899999999999999999998889999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~  376 (458)
                      ....      +..+..|...+.+++|+|++..+++++   .|+.|++||+.+++.+..+ .+...+.++.|++++..+++
T Consensus       166 ~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         166 TGKC------VATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             cccc------ceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence            7665      666778888999999999765555543   5999999999999988888 55668999999999777766


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                        +..++.|++|++.+++.+..+.+|...|.+++|+|++.+|++++.||.|++|+
T Consensus       237 --~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         237 --GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             --EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence              44699999999999999999999999999999999999999999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.9e-35  Score=281.35  Aligned_cols=248  Identities=25%  Similarity=0.447  Sum_probs=220.4

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-------------------------------eeEEecCCCc
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-------------------------------QLRTLRGGHR  226 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-------------------------------~~~~~~~~~~  226 (458)
                      ++......++|..|++|+.+||.|..|..|++|.+...+                               ..+++. +|.
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~  451 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHS  451 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCC
Confidence            333335569999999999999999999999999876311                               122333 499


Q ss_pred             ccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679          227 SRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV  304 (458)
Q Consensus       227 ~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~  304 (458)
                      ++|....|.  .++|++++.|+++++|.+.+..+ +..+.||..+|+.+.|+|.|-+||+|+.|++-++|.......   
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P---  527 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP---  527 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc---
Confidence            999999995  58999999999999999998776 567889999999999999999999999999999999887655   


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                         +..+.+|.+.|.|+.|+|+ ..++++|+  .|.++|+||+.+|..++.+.. .++|.+++|+|+|++|++  |..||
T Consensus       528 ---lRifaghlsDV~cv~FHPN-s~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~ed~  599 (707)
T KOG0263|consen  528 ---LRIFAGHLSDVDCVSFHPN-SNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDEDG  599 (707)
T ss_pred             ---hhhhcccccccceEEECCc-ccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--cccCC
Confidence               7888999999999999995 67778876  999999999999999999965 578999999999999999  77999


Q ss_pred             cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      .|.+||+.++..+..+.+|++.|.+|.||.||..||+||.|.+|++||+......
T Consensus       600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            9999999999999999999999999999999999999999999999999765544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.5e-33  Score=242.18  Aligned_cols=255  Identities=18%  Similarity=0.348  Sum_probs=230.6

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+++|.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.. ....|...+|  +++++++|+.|....||++
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            467899999999999999999999999999999999999998888887 7889999999  5799999999999999999


Q ss_pred             cCC--C---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          254 RVR--D---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       254 ~~~--~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .+.  +   ...+.+.+|.+.+.++.|-+ ..+|++++.|.++.+||++++..      +..+.+|.+.|.+++++|...
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~------~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ------TQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE------EEEecCCcccEEEEecCCCCC
Confidence            865  2   34567889999999999976 66799999999999999999987      889999999999999999778


Q ss_pred             cEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--CCc
Q 012679          329 NLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--TSR  405 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--~~~  405 (458)
                      +.+++|+  -|+..++||++.+.+++++.. .+.|+++.|.|+|.-+++  |.+|++.++||++..+.+..+...  ..+
T Consensus       200 ntFvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~g  275 (343)
T KOG0286|consen  200 NTFVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICG  275 (343)
T ss_pred             CeEEecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCC
Confidence            8999987  999999999999999999975 578999999999999998  889999999999999999888633  257


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          406 VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      |++++||..|++|.+|..|.++.+||.-.++.+....
T Consensus       276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~  312 (343)
T KOG0286|consen  276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA  312 (343)
T ss_pred             ceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence            9999999999999999999999999998777665544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=245.21  Aligned_cols=274  Identities=20%  Similarity=0.386  Sum_probs=238.1

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .++.+.|+|  .-++++|.|..|.+|++. +.++....+++|.++|..+.|.+|++.|++++.|.+|+.||+++|+.++.
T Consensus        49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk  127 (338)
T KOG0265|consen   49 EIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK  127 (338)
T ss_pred             eEEEEEECCCCCeEeecCCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence            355566666  458889999999999964 34456788899999999999999999999999999999999999999999


Q ss_pred             ecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      ++. |..-|+++..   +..++.+|+.||++++||++.... ++++ ....+++++.|..++..+.+|+-|+.|++||++
T Consensus       128 ~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r  204 (338)
T KOG0265|consen  128 HKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR  204 (338)
T ss_pred             hcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEecccccceeeccccCceeeeccc
Confidence            998 9999999987   357889999999999999997664 3333 236689999999999999999999999999999


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC----CeeEEEeCC-----CCeEEEEEc
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG----ACLNSVDTG-----SQVCALLWN  368 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~----~~~~~~~~~-----~~v~~~~~s  368 (458)
                      ....      ++.+.+|...|+.+..+|++..++.-+   .|.++++||++-.    .++..+..+     .....+.|+
T Consensus       205 ~~d~------~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws  275 (338)
T KOG0265|consen  205 KNDG------LYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS  275 (338)
T ss_pred             cCcc------eEEeecccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence            8887      899999999999999999888777543   8999999999853    345555432     235678999


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      |++..+-+  |+.|..+++||..+...+..+.||.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus       276 p~~~~i~a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  276 PNGTKITA--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCCCcccc--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999988  78999999999999999999999999999999999999999999999998743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.5e-35  Score=263.32  Aligned_cols=246  Identities=24%  Similarity=0.484  Sum_probs=214.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  260 (458)
                      ...|..|.|.|+|+.|++|+..|.+.+|+..+-.....+.. |..+|.++.|  ++..+++|+.+|.|++|+..-..  +
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa-HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--V  172 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA-HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--V  172 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh-hcccceeEEEccCCCEEEEcCCCceEEecccchhh--h
Confidence            45799999999999999999999999999755443333444 9999999999  58999999999999999986443  4


Q ss_pred             EEEccc-ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          261 ETYRGH-NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       261 ~~~~~h-~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      +.+.+| ...|.+++|+|++..|++++.||+|+|||......      ...+.+|...|++++|+| ...++++++  .|
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWHP-~kgLiasgs--kD  243 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWHP-TKGLIASGS--KD  243 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccCC-ccceeEEcc--CC
Confidence            555555 48999999999999999999999999999998877      566789999999999999 578888877  99


Q ss_pred             CeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCE
Q 012679          340 RCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCT  417 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  417 (458)
                      ..|++||.++|.|+.++.. ...|..+.|++++++|++  ++.|..++++|+++++.+.++++|...|+++.|+| ...+
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l  321 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL  321 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence            9999999999999998865 566999999999999999  66999999999999999999999999999999999 5668


Q ss_pred             EEEEeCCCcEEEEecCCCCcccccC
Q 012679          418 VASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       418 l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      |.+|+.||.|..|.+....++....
T Consensus       322 ftsgg~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  322 FTSGGSDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             eeeccCCCceEEEeccccccccCCC
Confidence            8999999999999998555544433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=234.14  Aligned_cols=276  Identities=21%  Similarity=0.368  Sum_probs=222.1

Q ss_pred             cceeeccCC---CeEEEEcCCEEEEEECCCCC-eeeEEEe-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--e
Q 012679          144 LNLLDWGSS---NVLAIALGSTVYLWDASDGT-TSELVTV-DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--R  216 (458)
Q Consensus       144 ~~~~~~~~~---~~la~~~d~~v~iwd~~~~~-~~~~~~~-~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~  216 (458)
                      +-.++|++.   .+++++.|..|++|+...+. ......+ .+|+..|.+++|+|.|++||+|+.|+++.||.-..+  +
T Consensus        17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe   96 (312)
T KOG0645|consen   17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE   96 (312)
T ss_pred             EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee
Confidence            445889986   47888889999999988533 3222222 478999999999999999999999999999976543  6


Q ss_pred             eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ++.++.+ |...|.|++|  +|++|+++++|..|.||.+....  .+...++.|.+.|..+.|+|...+|++++.|++|+
T Consensus        97 cv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen   97 CVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK  175 (312)
T ss_pred             EEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence            7788887 9999999999  58999999999999999998443  45778999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      +|+-....   ...+.+++.+|...|.+++|++.|. -|++++  .|++++||-..+.-   ...+..++..+.|.  ..
T Consensus       176 ~~~~~~dd---dW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~s--dD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~  244 (312)
T KOG0645|consen  176 VYRDEDDD---DWECVQTLDGHENTVWSLAFDNIGS-RLVSCS--DDGTVSIWRLYTDL---SGMHSRALYDVPWD--NG  244 (312)
T ss_pred             EEeecCCC---CeeEEEEecCccceEEEEEecCCCc-eEEEec--CCcceEeeeeccCc---chhcccceEeeeec--cc
Confidence            99876422   2355889999999999999999764 555655  99999999866321   12245678889998  44


Q ss_pred             eEEEEecCCCCcEEEEeCCCc------eeeE-EEeCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q 012679          373 ELLSSHGFTQNQLTLWKYPSM------VKMA-ELSGHTSRVLFMAQSPD-GCTVASAAADETLRFWNVF  433 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~------~~~~-~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~  433 (458)
                      .|++  +..|+.|++|.-...      +.+. .-..|...|++++|.|. ...|++|+.||.|++|.+.
T Consensus       245 ~IaS--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  245 VIAS--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceEe--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            5555  447999999976532      2222 23468899999999994 6789999999999999874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.8e-32  Score=250.99  Aligned_cols=297  Identities=18%  Similarity=0.331  Sum_probs=242.3

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEec---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVD---DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~---~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      -+++++.++|  ..+++++.||.|++||-.+|+.  +..+.   +|.+.|.+++|+||++.+++++.|.+++|||+.+.+
T Consensus       191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS  268 (603)
T ss_pred             cceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence            3689999988  5699999999999999999987  66666   899999999999999999999999999999999999


Q ss_pred             eeEEecCCCc--ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679          217 QLRTLRGGHR--SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW  294 (458)
Q Consensus       217 ~~~~~~~~~~--~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw  294 (458)
                      +++++..+..  ..-..+-|.+..|++.+.+|.|.+++..... +...+.+|...|+++..+||+++|++|+.||.|.-|
T Consensus       269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W  347 (603)
T KOG0318|consen  269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW  347 (603)
T ss_pred             eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence            9999885333  3344455678899999999999999998877 688999999999999999999999999999999999


Q ss_pred             eCCCCCCCCcc------------------------------------------------ee-------------------
Q 012679          295 DRSMASSNSVT------------------------------------------------QW-------------------  307 (458)
Q Consensus       295 d~~~~~~~~~~------------------------------------------------~~-------------------  307 (458)
                      |...+......                                                ++                   
T Consensus       348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence            98765432110                                                00                   


Q ss_pred             eeeeccc--------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEE
Q 012679          308 LHRLEEH--------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       308 ~~~~~~h--------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                      +..+..+        .....+++++|+ ...++.|+  .|++|++|.+..+..   ...+++...++.++|+|++.+|++
T Consensus       428 iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~  504 (603)
T KOG0318|consen  428 IVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA  504 (603)
T ss_pred             EEEEecCCcceeeccccccceEEEcCC-CCEEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence            0000101        112457788885 45566666  999999999987653   345677899999999999999999


Q ss_pred             EecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCC
Q 012679          377 SHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKP  446 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~  446 (458)
                        |...+.+.+||..+.+... ...-|+.+|.+++|+|+..++|||+.|-.|.||++..+.........++
T Consensus       505 --~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~  573 (603)
T KOG0318|consen  505 --GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHL  573 (603)
T ss_pred             --eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccc
Confidence              6689999999999877643 3344999999999999999999999999999999988776654444443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-32  Score=236.79  Aligned_cols=254  Identities=16%  Similarity=0.272  Sum_probs=218.1

Q ss_pred             eEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCC-----CceeeEEecCCCcccEEEEEe--CCCeEEEEeCCC
Q 012679          175 ELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDST-----ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDG  246 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~-----~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg  246 (458)
                      ...++++|.+.|+.++..+. ...+++++.|.++.+|++.     .|..++.+.+ |...|..+..  ++++.++++.|+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccccc
Confidence            35678999999999999885 5688999999999999864     4667888888 9999998887  689999999999


Q ss_pred             cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEec
Q 012679          247 LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWC  324 (458)
Q Consensus       247 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~  324 (458)
                      ++++||+.+++ ....+.+|...|.+++|++|.+.+++|+.|++|++|+......       .++..+  ...|.|+.|+
T Consensus        86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-------~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-------YTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             eEEEEEecCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-------EEEecCCCcCcEEEEEEc
Confidence            99999999885 4788999999999999999999999999999999999876532       333333  7889999999


Q ss_pred             CCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          325 PFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       325 p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      |.. +.++++++  .|+++++||+++.+....+.. .+.++.+.++|||..+++  |..||.+.+||++.++.+..+. |
T Consensus       158 P~~~~p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkdg~~~LwdL~~~k~lysl~-a  232 (315)
T KOG0279|consen  158 PNESNPIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKDGEAMLWDLNEGKNLYSLE-A  232 (315)
T ss_pred             CCCCCcEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCCceEEEEEccCCceeEecc-C
Confidence            975 56777766  999999999999988877754 567999999999999988  7799999999999999988774 8


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA  443 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~  443 (458)
                      ...|.+++|+|+.-.|+.+ .+..|+|||+..+..+.....
T Consensus       233 ~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  233 FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccc
Confidence            8899999999998766644 566799999998877766543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.4e-33  Score=273.92  Aligned_cols=281  Identities=24%  Similarity=0.448  Sum_probs=240.0

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC-CCceee
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS-TANRQL  218 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~-~~~~~~  218 (458)
                      ..+.++++++  ..+++++.++.+++|+..+.+...+..+.+|...|.+++|+|+|+++++|+.|++|+|||+ ..+..+
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~  239 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL  239 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence            3455677765  5577777999999999976662235666899999999999999999999999999999999 556888


Q ss_pred             EEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          219 RTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      +++.+ |...|++++|+  ++++++|+.|++|++||++++. ++..+.+|.+.|++++|++++++|++++.|+.|+|||+
T Consensus       240 ~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~  317 (456)
T KOG0266|consen  240 KTLKG-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL  317 (456)
T ss_pred             EEecC-CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence            99996 99999999995  6899999999999999999855 58999999999999999999999999999999999999


Q ss_pred             CCCCCCCcceeeeeecccccc--eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC----CeEEEEEcCC
Q 012679          297 SMASSNSVTQWLHRLEEHTSA--VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS----QVCALLWNKN  370 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~----~v~~~~~s~~  370 (458)
                      .++...    +...+..+...  +.+++|+|++.+++...   .|+.+++||+..+.++..+..+.    .+.+...++.
T Consensus       318 ~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  318 ETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             CCCcee----eeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            988731    13455555544  99999999877776644   89999999999999888876532    2344455778


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEe--CCCcEEEEecC
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAA--ADETLRFWNVF  433 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s--~Dg~i~iW~~~  433 (458)
                      +..+++  |..|+.|.+|+..++..+..+.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       391 ~~~i~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  391 GKLIYS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCeEEE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            888888  779999999999999999999999 88999999999999999998  79999999754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-34  Score=252.77  Aligned_cols=255  Identities=20%  Similarity=0.341  Sum_probs=231.0

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+.+|..+|+.+-|+|+-..+++++.|++|++||..+++..+.+++ |...|..++|+  |.+|++++.|-.+.+||.
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEecCccEEEecCCccchhheeH
Confidence            556678999999999999999999999999999999999999999998 99999999995  799999999999999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      .+....++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++-+      +.++.+|...|..++.+.| ..++|+
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c------v~t~~~h~ewvr~v~v~~D-Gti~As  252 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC------VKTFPGHSEWVRMVRVNQD-GTIIAS  252 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee------EEeccCchHhEEEEEecCC-eeEEEe
Confidence            876666788889999999999999999999999999999999999988      8999999999999999985 678888


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCC---------------CeEEEEecCCCCcEEEEeCCCceeeE
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNE---------------RELLSSHGFTQNQLTLWKYPSMVKMA  397 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~---------------~~l~~~~g~~d~~i~iwd~~~~~~~~  397 (458)
                      ++  .|.+|++|-+.++++...+. +..+|-+++|.|..               .++.+  |..|++|++||+.++.++.
T Consensus       253 ~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  253 CS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             cC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEE
Confidence            77  99999999999998877664 45678888887642               34444  7789999999999999999


Q ss_pred             EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       398 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      ++.+|...|..++|+|.|+||+++..|++|++||+.+.+..+...
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            999999999999999999999999999999999999988877655

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-32  Score=261.91  Aligned_cols=277  Identities=18%  Similarity=0.357  Sum_probs=237.6

Q ss_pred             CCCeEEEEcCCEEEEEECCC-----------------------C-C------eee--EEEecCCCCCEEEEEEcCCCCEE
Q 012679          151 SSNVLAIALGSTVYLWDASD-----------------------G-T------TSE--LVTVDDENGPVTSVNWAPDGRHI  198 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~-----------------------~-~------~~~--~~~~~~h~~~V~~v~~s~~g~~l  198 (458)
                      ...+++++.||.+.+|....                       + +      ...  ..-+......|++.+|++.-+.|
T Consensus       201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~l  280 (893)
T KOG0291|consen  201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLL  280 (893)
T ss_pred             cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEE
Confidence            35699999999999998761                       1 1      000  11122334789999999999999


Q ss_pred             EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCC-CcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679          199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMD-GLIINNDVRVRDHIVETYRGHNQEVCGLKW  275 (458)
Q Consensus       199 a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  275 (458)
                      |+|..+|...+|++.....++.+.. ...+|..++||  |+.|+.|+.. |.+.||+.+.... +...++|...++++++
T Consensus       281 vvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-VlKQQgH~~~i~~l~Y  358 (893)
T KOG0291|consen  281 VVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-VLKQQGHSDRITSLAY  358 (893)
T ss_pred             EEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-eeeccccccceeeEEE
Confidence            9999999999999999999999987 77899999997  8999998765 8999999997665 6677899999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679          276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS  355 (458)
Q Consensus       276 spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~  355 (458)
                      +|||+++|+|+.||.|+|||...+-+      ..++..|++.|+++.|+..+..++.+ +  .||+|+.||+......++
T Consensus       359 SpDgq~iaTG~eDgKVKvWn~~SgfC------~vTFteHts~Vt~v~f~~~g~~llss-S--LDGtVRAwDlkRYrNfRT  429 (893)
T KOG0291|consen  359 SPDGQLIATGAEDGKVKVWNTQSGFC------FVTFTEHTSGVTAVQFTARGNVLLSS-S--LDGTVRAWDLKRYRNFRT  429 (893)
T ss_pred             CCCCcEEEeccCCCcEEEEeccCceE------EEEeccCCCceEEEEEEecCCEEEEe-e--cCCeEEeeeecccceeee
Confidence            99999999999999999999998877      89999999999999999976555554 4  899999999999999999


Q ss_pred             EeCCCC--eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          356 VDTGSQ--VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       356 ~~~~~~--v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +..+.+  ..+++..|.|..++++ +.+.-.|.||++.+|+.+..+.||.++|.+++|+|+|..|++++.|.+||+||++
T Consensus       430 ft~P~p~QfscvavD~sGelV~AG-~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  430 FTSPEPIQFSCVAVDPSGELVCAG-AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             ecCCCceeeeEEEEcCCCCEEEee-ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence            987654  5677888888877773 3344579999999999999999999999999999999999999999999999999


Q ss_pred             CCCccc
Q 012679          434 GAPQVI  439 (458)
Q Consensus       434 ~~~~~~  439 (458)
                      ......
T Consensus       509 ~s~~~v  514 (893)
T KOG0291|consen  509 SSSGTV  514 (893)
T ss_pred             ccCcee
Confidence            874443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-33  Score=238.33  Aligned_cols=269  Identities=19%  Similarity=0.332  Sum_probs=244.7

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      .+++++.|+.-.+-+-++|.+  +-++.+|.+.|.+.....+....|+++.|=+-+|||.-+|..+..+.  |..-|.++
T Consensus        31 flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~  106 (334)
T KOG0278|consen   31 FLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAV  106 (334)
T ss_pred             EEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeE
Confidence            378888899999999999999  88999999999999999999999999999999999999999999998  89999999


Q ss_pred             Ee--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee
Q 012679          233 AW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       233 ~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      +|  +.++|++|+.+..++|||++........+.+|.+.|..+.|....+.|++.+.|++|++||.+++..      ++.
T Consensus       107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~------v~s  180 (334)
T KOG0278|consen  107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE------VQS  180 (334)
T ss_pred             EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE------EEE
Confidence            99  4689999999999999999988877888999999999999999999999999999999999999987      666


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      +. ....|+++..++++..+..+    ..+.|.+||..+...++.++.+..|.+...+|+...+++  |..|..++.||+
T Consensus       181 L~-~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged~~~~kfDy  253 (334)
T KOG0278|consen  181 LE-FNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGEDFKVYKFDY  253 (334)
T ss_pred             Ee-cCCCCcceeeccCCCEEEEe----cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcceEEEEEec
Confidence            54 46789999999986655544    567899999999999999999999999999999977776  779999999999


Q ss_pred             CCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          391 PSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       391 ~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      .+++.+..+ ++|.++|.|+.|+|||...++|+.||+|++|....++..
T Consensus       254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            999999986 899999999999999999999999999999998765543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.7e-33  Score=244.73  Aligned_cols=250  Identities=24%  Similarity=0.425  Sum_probs=225.8

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++++..++.+ |...|..++++  ..++++++.|+.|+.||+
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            345679999999999999999999999999999999999999999998 99999999996  479999999999999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      +..+ .++.+.+|-+.|.|++.+|.-..|++|+.|.+++|||+++...      ++.+.+|..+|..+.+.|..+.++ +
T Consensus       223 e~nk-vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~~V~~~~~dpqvi-t  294 (460)
T KOG0285|consen  223 EYNK-VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVASVMCQPTDPQVI-T  294 (460)
T ss_pred             hhhh-hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce------EEEecCCCCcceeEEeecCCCceE-E
Confidence            9765 4788999999999999999999999999999999999999877      899999999999999999766665 4


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS  412 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  412 (458)
                      |+  .|++|++||++.|+...++.+ ...+.+++.+|....+++++   ...|+-|+++.+..+..+.+|..-|++++..
T Consensus       295 ~S--~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  295 GS--HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVN  369 (460)
T ss_pred             ec--CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC---CccceeccCCccchhhccccccceeeeeeec
Confidence            44  999999999999998877755 56799999999998888753   5679999999999999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          413 PDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       413 pdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      .|| ++++|+..|.+.+||...+..-..
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~  396 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQR  396 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCccccc
Confidence            887 778899999999999988765444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-32  Score=262.90  Aligned_cols=267  Identities=23%  Similarity=0.350  Sum_probs=232.3

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----eeEEecCCCcc
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR----QLRTLRGGHRS  227 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~----~~~~~~~~~~~  227 (458)
                      +.++.++..+.+++|+..+..+.   -+.+|.+.|.++....+|.+|++|+.|.++++|.++.+.    ++....+ |.+
T Consensus       337 ~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~  412 (775)
T KOG0319|consen  337 SHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTN  412 (775)
T ss_pred             ceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-ccc
Confidence            44566666789999998887753   678999999999966688999999999999999874432    3334444 999


Q ss_pred             cEEEEEeC---CCeEEEEeCCCcEEEEEccCCC----eeEE----EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          228 RVGSLAWN---NHILTTGGMDGLIINNDVRVRD----HIVE----TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       228 ~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~----~~~~----~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      .|.+++.+   ..+|++++.|+++++|++....    .+..    +...|...|++++++|+.+++|+||.|.+.+||++
T Consensus       413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l  492 (775)
T KOG0319|consen  413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL  492 (775)
T ss_pred             ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence            99999994   4899999999999999997621    1111    33579999999999999999999999999999999


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEE
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELL  375 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~  375 (458)
                      .....      +..+.+|...|.++.|+|. ..++++++  .|++|++|.+.+..|++++. +...|....|-.+++.|+
T Consensus       493 e~~~l------~~vLsGH~RGvw~V~Fs~~-dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qli  563 (775)
T KOG0319|consen  493 EQLRL------LGVLSGHTRGVWCVSFSKN-DQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLI  563 (775)
T ss_pred             cCceE------EEEeeCCccceEEEEeccc-cceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEE
Confidence            96555      8899999999999999994 77888887  89999999999999999998 567899999999999999


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++  ..||.|++|++.+.+++.++.+|.++|++++.+|++.+++||+.||.|.+|.=.
T Consensus       564 S~--~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  564 SA--GADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             ec--cCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            94  489999999999999999999999999999999999999999999999999643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.3e-33  Score=257.50  Aligned_cols=274  Identities=18%  Similarity=0.352  Sum_probs=232.3

Q ss_pred             ccceeeccC---CCeEEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWGS---SNVLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~---~~~la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      -++++.|-+   ..+++++.|+.|+||++-. +.+  +.++.+|..+|.+++|+++|..+.+++.|+.|++||+++|+++
T Consensus       216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~--lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~  293 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC--LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL  293 (503)
T ss_pred             ccchhhhccceeeEEEecCCCceEEEEEEecCcce--ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence            466777766   4588899999999999876 554  8899999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          219 RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      ..+.  ....+.|+.|+   .+.+++|+.|+.|+.||+++++ +++.+..|-+.|..+.|-++|+++++.+.|+.++||+
T Consensus       294 ~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe  370 (503)
T KOG0282|consen  294 SRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE  370 (503)
T ss_pred             EEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence            9998  56678888884   4899999999999999999887 5778888999999999999999999999999999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE---EE---eCCCCeEEEEEcC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN---SV---DTGSQVCALLWNK  369 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~---~~---~~~~~v~~~~~s~  369 (458)
                      .+.+....     .....+.-...++..+|+++.+++- +  .|+.|.++.+...-...   .+   ...+--+.+.|||
T Consensus       371 ~~~~v~ik-----~i~~~~~hsmP~~~~~P~~~~~~aQ-s--~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  371 NRIPVPIK-----NIADPEMHTMPCLTLHPNGKWFAAQ-S--MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             cCCCccch-----hhcchhhccCcceecCCCCCeehhh-c--cCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            98876521     1122334456789999977666553 3  89999999865432221   12   2345678999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD-GCTVASAAADETLRFWN  431 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~  431 (458)
                      ||.+|++  |..+|.+.+||.++.+.+..+++|...+..+.|+|. ...+||++.||.|++|+
T Consensus       443 DG~~l~S--GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  443 DGRTLCS--GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCeEEe--ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999  889999999999999999999999999999999994 46799999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5e-32  Score=262.63  Aligned_cols=237  Identities=21%  Similarity=0.389  Sum_probs=207.0

Q ss_pred             ccceeeccC-CC-eEEEEcCCEEEEEECCCCCe-----------------------------eeEEEecCCCCCEEEEEE
Q 012679          143 YLNLLDWGS-SN-VLAIALGSTVYLWDASDGTT-----------------------------SELVTVDDENGPVTSVNW  191 (458)
Q Consensus       143 ~~~~~~~~~-~~-~la~~~d~~v~iwd~~~~~~-----------------------------~~~~~~~~h~~~V~~v~~  191 (458)
                      .++|.++++ .. ++.+-.|..|++|.+...+.                             ....++-+|.++|..+.|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            477888876 33 44555688999999873110                             112346799999999999


Q ss_pred             cCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc
Q 012679          192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE  269 (458)
Q Consensus       192 s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~  269 (458)
                      +|+.++|++++.|++|++|.+.+..++..+.+ |..+|+++.|+  |.++++++.|++.++|...... +.+.+.+|.+.
T Consensus       460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD  537 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD  537 (707)
T ss_pred             cccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc
Confidence            99999999999999999999999999999996 99999999995  7899999999999999988644 57889999999


Q ss_pred             eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      |.|+.|+|+.+|+|+||.|.+|++||+.++..      +..|.+|.++|.+++|+|+ +..|++|+  .|+.|.+||+.+
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~--ed~~I~iWDl~~  608 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS------VRIFTGHKGPVTALAFSPC-GRYLASGD--EDGLIKIWDLAN  608 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcE------EEEecCCCCceEEEEEcCC-CceEeecc--cCCcEEEEEcCC
Confidence            99999999999999999999999999999988      8889999999999999996 55667766  999999999999


Q ss_pred             CCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          350 GACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       350 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      +..+..+. +.+.|+++.|+.+|..|++  |+.|++|++||+..
T Consensus       609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  609 GSLVKQLKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTK  650 (707)
T ss_pred             CcchhhhhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchh
Confidence            99887774 4677999999999999999  66899999999854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.8e-31  Score=264.35  Aligned_cols=251  Identities=25%  Similarity=0.464  Sum_probs=219.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      +...|+++.|+++|+++++++.++.+++|+....+  ..+.+.+ |...|.+++|  ++.++++|+.|++|++||+....
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence            36789999999999999999999999999997777  6677755 9999999999  57899999999999999997666


Q ss_pred             eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      ..++++.+|...|++++|+|+++++++|+.|++|+|||+++++.      +..+.+|...|.+++|++++..++ +++  
T Consensus       237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~------~~~l~~hs~~is~~~f~~d~~~l~-s~s--  307 (456)
T KOG0266|consen  237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC------VRKLKGHSDGISGLAFSPDGNLLV-SAS--  307 (456)
T ss_pred             eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE------EEeeeccCCceEEEEECCCCCEEE-EcC--
Confidence            77899999999999999999999999999999999999999766      889999999999999999755554 445  


Q ss_pred             CCCeEEEEECCCCC--eeEEEeCC--C-CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc---EEEE
Q 012679          338 GDRCIKFWNTHTGA--CLNSVDTG--S-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR---VLFM  409 (458)
Q Consensus       338 ~d~~i~lwd~~~~~--~~~~~~~~--~-~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~---V~~l  409 (458)
                      .|+.|++||+.++.  ++..+...  . .++.++|+|++.++++  +..|+.+++||+..+..+..+.+|...   +.+.
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence            89999999999999  55555432  2 5899999999999999  558999999999999999999999875   3444


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          410 AQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      ..++.+.++++|+.|+.|++|++.+...+......
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            56789999999999999999999986665554433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.3e-32  Score=226.75  Aligned_cols=254  Identities=21%  Similarity=0.316  Sum_probs=224.4

Q ss_pred             eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEE
Q 012679          175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINND  252 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd  252 (458)
                      ++..+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+ |...|..++.  ++..+++|+.|..+.+||
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCCCCceEEEEE
Confidence            3566788999999999999999999999999999999999999999998 9999998776  689999999999999999


Q ss_pred             ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      +.+++. .+.+.+|.++|+.+.|+.+...+++|+.|..+++||.++...    +|++.+......|.++....   ..++
T Consensus        88 V~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~Si~v~~---heIv  159 (307)
T KOG0316|consen   88 VNTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVSSIDVAE---HEIV  159 (307)
T ss_pred             cccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----CccchhhhhcCceeEEEecc---cEEE
Confidence            998875 789999999999999999999999999999999999998765    45788888888999998864   5666


Q ss_pred             EeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE--EEEE
Q 012679          333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV--LFMA  410 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V--~~l~  410 (458)
                      +|+  .||+++.||++.|...... .+.+|++++|+++++..++  |..++++++.|-.+++.+..++||...-  ...+
T Consensus       160 aGS--~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~  234 (307)
T KOG0316|consen  160 AGS--VDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC  234 (307)
T ss_pred             eec--cCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeee
Confidence            655  9999999999999865443 5789999999999999999  5589999999999999999999998653  3456


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          411 QSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       411 ~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      ++.....+++|++||.|.+||+-+...+.+..
T Consensus       235 l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~  266 (307)
T KOG0316|consen  235 LNQSDTHVFSGSEDGKVYFWDLVDETQISKLS  266 (307)
T ss_pred             ecccceeEEeccCCceEEEEEeccceeeeeec
Confidence            66677789999999999999999887776544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-32  Score=243.20  Aligned_cols=299  Identities=20%  Similarity=0.276  Sum_probs=243.5

Q ss_pred             CCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679          121 PRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIA  199 (458)
Q Consensus       121 ~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la  199 (458)
                      .++.+|.....++..  ..+...+..++-++..+++++.|.+..+|.+. ...+....++.+|..+|..+.||||.++|+
T Consensus       208 ~~~qip~qt~qil~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLl  285 (519)
T KOG0293|consen  208 GRLQIPSQTWQILQD--HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLL  285 (519)
T ss_pred             CcccCCchhhhhHhh--CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEE
Confidence            346677666666664  44555555555556779999999999999865 344556788999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc-ccceEeEEEc
Q 012679          200 IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGH-NQEVCGLKWS  276 (458)
Q Consensus       200 ~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~l~~s  276 (458)
                      +++.+..+.+||+.+|.....+..++...+.+.+|  ++..+++|+.|+.|..||+....  ....++- ...|.+++.+
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEc
Confidence            99999999999999999999998767889999999  68899999999999999997543  3333332 3569999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679          277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV  356 (458)
Q Consensus       277 pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~  356 (458)
                      +||+++++.+.|..|++++......      .. +.....+|++++.+.++...++.-   .+..|++||+...+.+..+
T Consensus       364 ~Dgk~vl~v~~d~~i~l~~~e~~~d------r~-lise~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  364 YDGKYVLLVTVDKKIRLYNREARVD------RG-LISEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             CCCcEEEEEecccceeeechhhhhh------hc-cccccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhHHHHh
Confidence            9999999999999999999877654      22 223456899999999888777765   7999999999988877777


Q ss_pred             eCCC---CeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 012679          357 DTGS---QVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWN  431 (458)
Q Consensus       357 ~~~~---~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~  431 (458)
                      ..+.   -+..-||-... .++++  |.+|++|+||+..+++++.++.||...|++++|+| +-.++|+||.||+||||.
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            5543   35555666544 44444  88999999999999999999999999999999999 567899999999999998


Q ss_pred             cCCC
Q 012679          432 VFGA  435 (458)
Q Consensus       432 ~~~~  435 (458)
                      ....
T Consensus       512 ~~~~  515 (519)
T KOG0293|consen  512 PSDN  515 (519)
T ss_pred             CCcc
Confidence            7543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-31  Score=251.67  Aligned_cols=277  Identities=17%  Similarity=0.301  Sum_probs=243.9

Q ss_pred             cceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          144 LNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       144 ~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      +.+++++|.  -++++-..|.|.|||.++...  +..+.-...+|.+..|-...+++++|+.|..|+||+..+++.+..|
T Consensus        16 VKsVd~HPtePw~la~LynG~V~IWnyetqtm--VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F   93 (794)
T KOG0276|consen   16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTM--VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF   93 (794)
T ss_pred             eeeeecCCCCceEEEeeecCeeEEEeccccee--eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence            556788884  478888899999999998877  4455555778999999999999999999999999999999999999


Q ss_pred             cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 012679          222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~  298 (458)
                      .. |..-|.|++.++  .++++++.|-+|++||.+..-.+.+++.+|...|.+++|+| |.+.+|+++-|++|+||.+.+
T Consensus        94 eA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen   94 EA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             ec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence            98 999999999986  68999999999999999988888899999999999999999 778999999999999999988


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLS  376 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~  376 (458)
                      ..+      ..++++|...|.++.+-+-+ .-.+++|+  .|.+|++||.++..|+++++. ...|..++|+|.-..+++
T Consensus       173 ~~~------nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  173 PHP------NFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             CCC------ceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence            877      78899999999999998844 23666665  999999999999999999985 467999999999999988


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                        |..||+++||+..+.+...++.-.-++|+|++-.+.+..++.|...|.|. .++..
T Consensus       245 --gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgr  299 (794)
T KOG0276|consen  245 --GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGR  299 (794)
T ss_pred             --ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccC
Confidence              77999999999999999888887889999999999888888776666553 34433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.1e-31  Score=262.26  Aligned_cols=281  Identities=22%  Similarity=0.357  Sum_probs=249.2

Q ss_pred             CccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEE-ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVT-VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       140 ~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      ++..+.+..|..+.+++++.+++|.+||..++..  +.. +.+|.+.|.++++...+.+|++|+.|.+++|||..++++.
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            4566778888889999999999999999998876  444 8999999999999887889999999999999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      ..+.+ |...|.++...+..+++|+.|.+|++|+++++.. +..+.+|..+|.++..+  +.++++|+.|++|++||+.+
T Consensus       285 ~~l~g-h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  285 HSLQG-HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             EEecC-CCceEEEEEccCceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            99997 9999999999999999999999999999997664 77888899999999986  88999999999999999997


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCCeEEEE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~  377 (458)
                      .+.      +..+.+|...|+++.+.+.  ..+++|+  .|++|++||+++. +++.++..+..+. -.....++.|++ 
T Consensus       361 ~~c------l~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs-  428 (537)
T KOG0274|consen  361 GKC------LKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS-  428 (537)
T ss_pred             cee------eeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe-
Confidence            776      9999999999999988763  6777776  9999999999999 9999988766554 334456777877 


Q ss_pred             ecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          378 HGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                       +..|++|++||..+++.+..+.+ |...|..+++.  ...+++++.||++++||+..+......
T Consensus       429 -~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  429 -SSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             -ccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence             55899999999999999999998 77889999886  457888999999999999988877644

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=246.81  Aligned_cols=237  Identities=22%  Similarity=0.427  Sum_probs=207.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      ....|+|+.+.  ...+++|..|.+|+|||..+..+++.+.+ |.+.|.|+.++...|++|+.|.+|++||+.+++. +.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~-l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP-LN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeeccceEEEecCCCceEEEEeccCCch-hh
Confidence            35679999984  55799999999999999999999999998 9999999999999999999999999999998885 78


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC  341 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~  341 (458)
                      ++.+|...|..+.|+  ..++++++.|.++.+||+..+..   ....+.+.+|.++|..+.|+.   .++++++  .|++
T Consensus       272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdfd~---kyIVsAS--gDRT  341 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDD---KYIVSAS--GDRT  341 (499)
T ss_pred             HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH---HHHHHHHhhhhhheeeecccc---ceEEEec--CCce
Confidence            888999999999996  56999999999999999988764   333567889999999999975   3777776  8999


Q ss_pred             EEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEE
Q 012679          342 IKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS  420 (458)
Q Consensus       342 i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s  420 (458)
                      |++|++.++++++++..+ ..|.++.+  .++.+++  |.+|++|++||+..|.++..++||..-|.++.|  |.+.+++
T Consensus       342 ikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS  415 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS  415 (499)
T ss_pred             EEEEeccceeeehhhhcccccceehhc--cCeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence            999999999999998654 34655554  5666666  889999999999999999999999999999999  6778999


Q ss_pred             EeCCCcEEEEecCCCCcc
Q 012679          421 AAADETLRFWNVFGAPQV  438 (458)
Q Consensus       421 ~s~Dg~i~iW~~~~~~~~  438 (458)
                      |+.||+|++||+..+...
T Consensus       416 GaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             ccccceEEEEecccccCC
Confidence            999999999999876654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.7e-30  Score=272.53  Aligned_cols=278  Identities=13%  Similarity=0.246  Sum_probs=223.0

Q ss_pred             CccccceeeccC--CCeEEEEcCCEEEEEECCCC----Ce--eeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEE
Q 012679          140 DDYYLNLLDWGS--SNVLAIALGSTVYLWDASDG----TT--SELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLW  210 (458)
Q Consensus       140 ~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~----~~--~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iw  210 (458)
                      ....+.+++|++  +.+++++.|+.|+||+....    ..  .....+.+ ...|.+++|++ ++.+||+++.||.|+||
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lW  560 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVW  560 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence            345688899987  34778889999999997542    11  11233333 46799999987 57899999999999999


Q ss_pred             eCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc-CCCCEEEEEE
Q 012679          211 DSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS-ASGQQLASGG  286 (458)
Q Consensus       211 d~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~sg~  286 (458)
                      |+.+++.+..+.. |...|.+++|+   +.+|++|+.||.|++||++++.. +..+..+ ..|+++.|+ +++.+|++|+
T Consensus       561 d~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        561 DVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             ECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence            9999999988887 99999999995   57999999999999999987664 4555544 679999995 5799999999


Q ss_pred             CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC------CeeEEEeC-C
Q 012679          287 NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG------ACLNSVDT-G  359 (458)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~------~~~~~~~~-~  359 (458)
                      .||.|++||++....     ++..+.+|...|.++.|.+ + ..+++++  .|+.|++||+..+      .++..+.. .
T Consensus       638 ~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~~-~-~~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~  708 (793)
T PLN00181        638 ADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFVD-S-STLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHT  708 (793)
T ss_pred             CCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEeC-C-CEEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence            999999999987542     1556778999999999974 3 4566665  8999999999753      45666654 4


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-------------eCCCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679          360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-------------SGHTSRVLFMAQSPDGCTVASAAADET  426 (458)
Q Consensus       360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-------------~~h~~~V~~l~~spdg~~l~s~s~Dg~  426 (458)
                      ..+..+.|++++.+|++  |..|+.|.+|+.....++..+             ..|...|.+++|+|++..|++|+.||.
T Consensus       709 ~~i~~v~~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        709 NVKNFVGLSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             CCeeEEEEcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            56789999999998888  568999999998765443222             234567999999999999999999999


Q ss_pred             EEEEec
Q 012679          427 LRFWNV  432 (458)
Q Consensus       427 i~iW~~  432 (458)
                      |+||++
T Consensus       787 I~i~~~  792 (793)
T PLN00181        787 IKILEM  792 (793)
T ss_pred             EEEEec
Confidence            999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-31  Score=224.70  Aligned_cols=262  Identities=24%  Similarity=0.398  Sum_probs=220.2

Q ss_pred             cCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEeC
Q 012679          159 LGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAWN  235 (458)
Q Consensus       159 ~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~  235 (458)
                      ..|.++|.++. .+.+.....+. -.+.+..|+|+++ .+.+++++.||.++|||+.. ..+++.++. |...|.++.|+
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn  113 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWN  113 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccc
Confidence            46899999996 44444455554 3678999999994 56788899999999999643 357777887 99999999996


Q ss_pred             ---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679          236 ---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       236 ---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                         +..+++++.||+|++|+...++. +.++.+|...|...+|+| ..+.+++++.|+++++||++....      ...+
T Consensus       114 ~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk------~~~i  186 (311)
T KOG0277|consen  114 TVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK------FMSI  186 (311)
T ss_pred             cccceeEEeeccCCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc------eeEE
Confidence               57888889999999999986665 788999999999999999 688999999999999999988755      4458


Q ss_pred             cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      ..|...+.++.|+....+++++|+  .|+.|+.||+++.+ ++..+.. +-.|..+.|+|....+++++. -|-+++|||
T Consensus       187 ~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas-YDmT~riw~  263 (311)
T KOG0277|consen  187 EAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS-YDMTVRIWD  263 (311)
T ss_pred             EeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc-ccceEEecc
Confidence            899999999999999999999988  99999999999854 5555543 446999999999888877644 689999999


Q ss_pred             CCCc-eeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 012679          390 YPSM-VKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV  432 (458)
Q Consensus       390 ~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~  432 (458)
                      .... ..+.+..-|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus       264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9844 45556677899999999998 6779999999999999983

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-30  Score=218.06  Aligned_cols=271  Identities=17%  Similarity=0.293  Sum_probs=231.2

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .++.+.++.  +..++++.|.+|++||...|.+  +.++.+|...|..++.+.|+..+++|+.|..|++||+++|+.++.
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l--iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr   96 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL--IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR   96 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccce--eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence            466666764  7799999999999999999988  889999999999999999999999999999999999999999999


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      +.+ |.+.|+.+.||  ...+++|+.|..+++||.+... .+++.+......|.++..+  +..|++|+.||+++.||++
T Consensus        97 ~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR  173 (307)
T KOG0316|consen   97 FRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR  173 (307)
T ss_pred             ccc-ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee
Confidence            998 99999999997  5899999999999999998764 4567777778889998874  6789999999999999999


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC---eEEEEEcCCCCeE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ---VCALLWNKNEREL  374 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l  374 (458)
                      .+..      ..  .....+|+++.|+++++..|+++   .|+++++.|-.+|+.+..+..+..   -...+++.....+
T Consensus       174 ~G~l------~s--Dy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV  242 (307)
T KOG0316|consen  174 KGTL------SS--DYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV  242 (307)
T ss_pred             ccee------eh--hhcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence            9865      22  23456899999999988888865   899999999999999988865432   3345566666666


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ++  |.+||.+++||+.....+..+..|... |+.++++|.-..++++.. +.+.+|.-
T Consensus       243 ~s--gSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  243 FS--GSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ  298 (307)
T ss_pred             Ee--ccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence            66  789999999999999999999988877 899999998777777654 45666653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-29  Score=217.56  Aligned_cols=247  Identities=24%  Similarity=0.424  Sum_probs=210.8

Q ss_pred             eeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCC---ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCc
Q 012679          174 SELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTA---NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGL  247 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~  247 (458)
                      .....+++|.+.+..++|+|- |..||+|+.|..|+||+...   -.+...+..+|...|.+++|  ++++|++|+.|++
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            346778899999999999997 99999999999999999884   45566676779999999999  5899999999999


Q ss_pred             EEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          248 IINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       248 i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      +.||.-..+. .++..+.||..+|.+++|+++|++||+++.|..|-||.+.....   ......+++|...|+.+.|+| 
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDVK~V~WHP-  160 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDVKHVIWHP-  160 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc---EEEEeeeccccccccEEEEcC-
Confidence            9999866443 46789999999999999999999999999999999999885443   455788999999999999999 


Q ss_pred             CCcEEEEeCCCCCCeEEEEECC---CCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          327 QSNLLATGGGGGDRCIKFWNTH---TGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~---~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ...||++++  .|.+|++|+-.   ...+++++..+ ..|.+++|++.|..|+++  ..|++++||.+.+.-.    .-|
T Consensus       161 t~dlL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~--sdD~tv~Iw~~~~~~~----~~~  232 (312)
T KOG0645|consen  161 TEDLLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC--SDDGTVSIWRLYTDLS----GMH  232 (312)
T ss_pred             CcceeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe--cCCcceEeeeeccCcc----hhc
Confidence            577888887  99999999876   34578888764 489999999999999984  4899999998652211    237


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ...+..++|.  ...|+|++.|+.|+++.-..
T Consensus       233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  233 SRALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             ccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence            7889999998  44899999999999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.8e-30  Score=237.67  Aligned_cols=251  Identities=30%  Similarity=0.535  Sum_probs=218.6

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~  254 (458)
                      .++.+|.++|++++|+|++++|++++.+|.|.+|++.+++....+.. |...+..+.|.  +..|++++.+|.|.+||+.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            34568999999999999999999999999999999998887777776 88899999994  5689999999999999998


Q ss_pred             CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      .... ...+..|...+.++.|+++++++++++.||.|.+||+.....      ...+..|...|.+++|+|+ ..+++++
T Consensus        82 ~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~-~~~l~~~  153 (289)
T cd00200          82 TGEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC------LTTLRGHTDWVNSVAFSPD-GTFVASS  153 (289)
T ss_pred             cccc-eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE------EEEeccCCCcEEEEEEcCc-CCEEEEE
Confidence            7543 567778888999999999999999988899999999986554      6667789999999999997 5566665


Q ss_pred             CCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          335 GGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      +  .|+.|++||+++++.+..+..+ ..+.++.|+|+++.+++++  .++.|.+||+..++.+..+..|...|.+++|+|
T Consensus       154 ~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~  229 (289)
T cd00200         154 S--QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS--SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP  229 (289)
T ss_pred             c--CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec--CCCcEEEEECCCCceecchhhcCCceEEEEEcC
Confidence            4  6999999999998888887654 4899999999998888853  599999999999999999988999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          414 DGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ++.++++++.||.|++|++........
T Consensus       230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~  256 (289)
T cd00200         230 DGYLLASGSEDGTIRVWDLRTGECVQT  256 (289)
T ss_pred             CCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence            999999888899999999987655444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-31  Score=249.28  Aligned_cols=248  Identities=21%  Similarity=0.332  Sum_probs=227.3

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCC
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~  256 (458)
                      +..+...|.+|.++|...+++++-.+|.|.||+.++...++.+.. ...+|.+..|  ..+.+++|+.|..|+||+..+.
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            445788999999999999999999999999999999999999997 8889999888  4689999999999999999998


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      +. +..+.+|...|.+++.+|...++++++.|-+|++||.+..-     .+.+.+++|...|.+++|.|...+.+|+++ 
T Consensus        88 ek-V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~s-  160 (794)
T KOG0276|consen   88 EK-VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-----ACEQTFEGHEHYVMQVAFNPKDPNTFASAS-  160 (794)
T ss_pred             ee-eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce-----eeeeEEcCcceEEEEEEecCCCccceeeee-
Confidence            86 78999999999999999999999999999999999998753     237889999999999999999999999988 


Q ss_pred             CCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCC--CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          337 GGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNE--RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~--~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                       -|++|++|.+....+..+++. ...|+++.|-+.|  .+|++  |.+|..|+|||+.+..++.++.||+..|..+.|+|
T Consensus       161 -LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs--gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp  237 (794)
T KOG0276|consen  161 -LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS--GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP  237 (794)
T ss_pred             -ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe--cCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence             999999999999999999875 4579999999877  46666  77999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCc
Q 012679          414 DGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      .-..++||+.||++|||+-.+-..
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             CCcEEEEecCCccEEEecCcceeh
Confidence            999999999999999999765443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.3e-30  Score=231.15  Aligned_cols=277  Identities=24%  Similarity=0.436  Sum_probs=227.6

Q ss_pred             ccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCC---CEEEEEecCCeEEEEeCCCcee
Q 012679          141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG---RHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      |-.+..+.-.+..+++++.||.+++||.. |+.  ...+.+|.++|.+++|.-..   ..|++++.|.++++|..+.++.
T Consensus       105 dDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~  181 (423)
T KOG0313|consen  105 DDWVSSVKGASKWILTGSYDGTSRIWDLK-GKS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN  181 (423)
T ss_pred             hhhhhhhcccCceEEEeecCCeeEEEecC-Cce--EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence            33556666667899999999999999976 444  67788999999999986533   3599999999999999887653


Q ss_pred             eEEe-c--CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCC------------------------CeeEEEEccccc
Q 012679          218 LRTL-R--GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVR------------------------DHIVETYRGHNQ  268 (458)
Q Consensus       218 ~~~~-~--~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~------------------------~~~~~~~~~h~~  268 (458)
                      .... .  .+|...|-+++.  ++..+++|+.|..|.+|+....                        ..++..+.+|..
T Consensus       182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence            3221 1  259999999998  5899999999999999993321                        123567889999


Q ss_pred             ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      +|.++.|++ ...+.+++.|.+|+.||+.++..      ...+. ....+.++..+| ...|+++|+  .|+.|++||.+
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~------~~~~~-~~ksl~~i~~~~-~~~Ll~~gs--sdr~irl~DPR  330 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL------KSTLT-TNKSLNCISYSP-LSKLLASGS--SDRHIRLWDPR  330 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccc------eeeee-cCcceeEeeccc-ccceeeecC--CCCceeecCCC
Confidence            999999987 77899999999999999999887      44443 356789999999 577888876  99999999999


Q ss_pred             CCC---eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          349 TGA---CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       349 ~~~---~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      ++.   ..+++ .+..-|.++.|+|...+++++ |..||++++||+++.. ++..+.+|.+.|.++.|. ++..|++||.
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa  408 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA  408 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence            864   22333 445679999999999888877 6689999999999887 999999999999999998 5668999999


Q ss_pred             CCcEEEEecC
Q 012679          424 DETLRFWNVF  433 (458)
Q Consensus       424 Dg~i~iW~~~  433 (458)
                      |.+|+|+.-.
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999998643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=1.8e-29  Score=234.04  Aligned_cols=280  Identities=21%  Similarity=0.419  Sum_probs=229.7

Q ss_pred             cccceeeccCCCeEEEE--cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEEEeCCCc
Q 012679          142 YYLNLLDWGSSNVLAIA--LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~--~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~iwd~~~~  215 (458)
                      +.++...++|.....++  ..|.|+|||....+.....+++.-.++|..++|+.|+++|++.+..    |.+.+||  +|
T Consensus        60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG  137 (603)
T KOG0318|consen   60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SG  137 (603)
T ss_pred             ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CC
Confidence            34556667775544444  4589999998765543344556667899999999999988776543    3566676  77


Q ss_pred             eeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          216 RQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ..+..+.+ |..+|.+++|.   +-.+++|+.|+.|.+|+-. .-+...++..|..-|.++.|+|||..+|+++.||.|.
T Consensus       138 ~SvGei~G-hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  138 NSVGEITG-HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             Cccceeec-cceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence            78888887 99999999994   6789999999999999854 2334566778999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeec---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC----CeEEE
Q 012679          293 IWDRSMASSNSVTQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS----QVCAL  365 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~----~v~~~  365 (458)
                      +||-.+++.      +..+.   +|.+.|.+++|+||+..++.++   .|.++++||+.+.++++++..+.    +...+
T Consensus       216 iyDGktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~  286 (603)
T KOG0318|consen  216 IYDGKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC  286 (603)
T ss_pred             EEcCCCccE------EEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence            999888876      55555   8999999999999877776654   79999999999999999997654    45566


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      .|-  ...|++.+  .+|.|.+++...+..+..+.||...|+++..+||+.+|++|+.||.|.-|+...+..-
T Consensus       287 lWq--kd~lItVS--l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  287 LWQ--KDHLITVS--LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             EEe--CCeEEEEE--cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            676  34444433  6899999999999999999999999999999999999999999999999999877654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=3.3e-30  Score=247.89  Aligned_cols=289  Identities=22%  Similarity=0.364  Sum_probs=247.0

Q ss_pred             eeeeCCCCCCccccceeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679          131 RTLDAPDLVDDYYLNLLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL  209 (458)
Q Consensus       131 ~~l~~~~~~~d~~~~~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~i  209 (458)
                      ..++.++.+.|  +..++++.++ +++.+.++.+++|+..+.++  +.++.  .+.+.+..|.|.++++++|...|.+.+
T Consensus       365 ~~i~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kc--iRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  365 SNIEIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKC--IRTIT--CGYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             ceeeeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcce--eEEec--cccEEEEEecCCCceEEEeccCCceEE
Confidence            34666677776  5667777755 55555678999999999887  66665  348999999999999999999999999


Q ss_pred             EeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe------eEE-----EEcccccceEeEEEc
Q 012679          210 WDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH------IVE-----TYRGHNQEVCGLKWS  276 (458)
Q Consensus       210 wd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~------~~~-----~~~~h~~~v~~l~~s  276 (458)
                      ||+.+...+.++.. |.+.|++++.  ++..+++|+.|.+|++||..-...      .+-     ....-...|.|+.+|
T Consensus       439 fdlaS~~l~Eti~A-HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  439 FDLASASLVETIRA-HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             EEeehhhhhhhhhc-cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence            99999999999886 9999999998  678999999999999999752110      000     111345689999999


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679          277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV  356 (458)
Q Consensus       277 pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~  356 (458)
                      |||++||++--|++|+||-+.+.+.      ...+.+|.-+|.|+..+|+ +.++++|+  .|+.|++|-+.-|.|-+++
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKF------flsLYGHkLPV~smDIS~D-SklivTgS--ADKnVKiWGLdFGDCHKS~  588 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKF------FLSLYGHKLPVLSMDISPD-SKLIVTGS--ADKNVKIWGLDFGDCHKSF  588 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceee------eeeecccccceeEEeccCC-cCeEEecc--CCCceEEeccccchhhhhh
Confidence            9999999999999999999998766      7788899999999999996 67788877  9999999999999998877


Q ss_pred             -eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          357 -DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       357 -~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                       .+...|.++.|.|....++++ | .|+.|+-||-...+.+..+.+|...|+|++.+|+|.++++++.|.+|++|.-...
T Consensus       589 fAHdDSvm~V~F~P~~~~FFt~-g-KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  589 FAHDDSVMSVQFLPKTHLFFTC-G-KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             hcccCceeEEEEcccceeEEEe-c-CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence             556789999999988888775 3 8999999999999999999999999999999999999999999999999997664


Q ss_pred             Cc
Q 012679          436 PQ  437 (458)
Q Consensus       436 ~~  437 (458)
                      ..
T Consensus       667 ~~  668 (888)
T KOG0306|consen  667 IL  668 (888)
T ss_pred             ce
Confidence            33

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.3e-30  Score=251.58  Aligned_cols=284  Identities=20%  Similarity=0.352  Sum_probs=241.4

Q ss_pred             cceeeccCCC--eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          144 LNLLDWGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       144 ~~~~~~~~~~--~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      +..++|+|.+  ++++--.|.|.+||..-+.+  +..+.+|.++|..|+|+|++.++++|+.|-.|+||+..+.+++.++
T Consensus        12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tl--i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL--IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             ccceecCCCCCEEEEeecCceeeeehhhhhhH--HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            3446777754  77777889999999998887  7889999999999999999999999999999999999999999999


Q ss_pred             cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679          222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      .+ |-.-|..+.|+.  ..|++++.|-+|+||+..++.+ +..+.||...|.|..|+|...+++++|-|.+|+|||+...
T Consensus        90 ~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen   90 LG-HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             cc-ccceeEEeeccCCCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence            98 999999999975  6899999999999999998775 7899999999999999999999999999999999998653


Q ss_pred             CCCC-----------------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---e
Q 012679          300 SSNS-----------------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---L  353 (458)
Q Consensus       300 ~~~~-----------------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~  353 (458)
                      ....                       .....+.+.+|...|+.++|+|. --++++|+  .|+.|++|.+..-+.   -
T Consensus       168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~--DDRqVKlWrmnetKaWEvD  244 (1202)
T KOG0292|consen  168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGA--DDRQVKLWRMNETKAWEVD  244 (1202)
T ss_pred             hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecC--CcceeeEEEeccccceeeh
Confidence            2211                       01113567899999999999994 66788876  999999999865432   1


Q ss_pred             EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       354 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ....+-..|.++.|+|....+++.  +.|+.|+|||+...+.+.+++...++-+.++.+|..++++ ++.|+-+.+|.+.
T Consensus       245 tcrgH~nnVssvlfhp~q~lIlSn--sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkle  321 (1202)
T KOG0292|consen  245 TCRGHYNNVSSVLFHPHQDLILSN--SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLE  321 (1202)
T ss_pred             hhhcccCCcceEEecCccceeEec--CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEc
Confidence            222355789999999999999984  4999999999999999999988888999999999998777 5567777788886


Q ss_pred             CCCc
Q 012679          434 GAPQ  437 (458)
Q Consensus       434 ~~~~  437 (458)
                      ...+
T Consensus       322 RErp  325 (1202)
T KOG0292|consen  322 RERP  325 (1202)
T ss_pred             ccCc
Confidence            4443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.98  E-value=8.8e-30  Score=217.66  Aligned_cols=278  Identities=19%  Similarity=0.291  Sum_probs=234.0

Q ss_pred             cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      ++.+.++.  +.|++++.|.+..||-..+|+.  +-++.+|.+.|+|+...-+.+++++|+.|.+++|||+++|+++..+
T Consensus        13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGer--lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~   90 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGER--LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW   90 (327)
T ss_pred             cceEEecCCCcEEEEecCCCCceEEEecCCce--eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence            44455554  6689999999999999888877  8999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccEEEEEe--CCCeEEEEe-----CCCcEEEEEccCC------CeeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679          222 RGGHRSRVGSLAW--NNHILTTGG-----MDGLIINNDVRVR------DHIVETYRGHNQEVCGLKWSASGQQLASGGND  288 (458)
Q Consensus       222 ~~~~~~~v~~l~~--~~~~l~sg~-----~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d  288 (458)
                      .  ...+|..+.|  ++++++...     ..+.|.++|++..      +.+...+..+...++.+-|.|-++.|++|..|
T Consensus        91 k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~  168 (327)
T KOG0643|consen   91 K--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED  168 (327)
T ss_pred             e--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence            8  6677887777  466666654     3468999999843      23456677788999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEc
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN  368 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s  368 (458)
                      |.|.+||++++...     +...+.|...|+.+.++++ ..++++++  .|.+-++||..+-++++++.+..+|++.+++
T Consensus       169 G~is~~da~~g~~~-----v~s~~~h~~~Ind~q~s~d-~T~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aais  240 (327)
T KOG0643|consen  169 GSISIYDARTGKEL-----VDSDEEHSSKINDLQFSRD-RTYFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAIS  240 (327)
T ss_pred             CcEEEEEcccCcee-----eechhhhccccccccccCC-cceEEecc--cCccceeeeccceeeEEEeeecccccceecc
Confidence            99999999987542     5666789999999999997 55666766  9999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCCCcE------------EEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          369 KNERELLSSHGFTQNQL------------TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i------------~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      |....++...|.+-..|            ++|++-..+.+..+++|-++|++++|+|+|+..++|+.||.||+..+.
T Consensus       241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            99888888544322222            233333445677889999999999999999999999999999998664

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=6.5e-29  Score=245.43  Aligned_cols=284  Identities=19%  Similarity=0.294  Sum_probs=217.1

Q ss_pred             ccccceeeccCCCeEEEEcCCEEEEEECCCCCe----------ee-EEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEE
Q 012679          141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTT----------SE-LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQ  208 (458)
Q Consensus       141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~----------~~-~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~  208 (458)
                      +..+....|+..+++++..+.....|+...+..          .. ...+.+|.+.|++++|+| ++++||+|+.||+|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            334555667777778777777777776544321          10 123668999999999999 889999999999999


Q ss_pred             EEeCCCce-------eeEEecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679          209 LWDSTANR-------QLRTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS  278 (458)
Q Consensus       209 iwd~~~~~-------~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  278 (458)
                      |||+.++.       .+..+.+ |...|.+++|++   ++|++|+.|+.|++||++++.. ...+.+|...|.+++|+|+
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEEEEECC
Confidence            99997653       4556666 999999999963   6899999999999999997754 6778899999999999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCC-eeEE
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGA-CLNS  355 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~-~~~~  355 (458)
                      +.+|++|+.|+.|+|||++++..      +..+..|... +..+.|.+++..++++|. ++.|+.|++||+++.. ++..
T Consensus       180 G~lLatgs~Dg~IrIwD~rsg~~------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIIDPRDGTI------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             CCEEEEecCCCEEEEEECCCCcE------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            99999999999999999998765      6677788764 456789997777766652 2468999999998754 4443


Q ss_pred             Ee--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          356 VD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       356 ~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ..  ....+....|+++++.++++ |..|+.|++||+.+++.+..... +..++..++|.|.-.  +-...-...|+|.+
T Consensus       254 ~~~d~~~~~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l  330 (493)
T PTZ00421        254 VDLDQSSALFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYAL  330 (493)
T ss_pred             eccCCCCceEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEe
Confidence            33  23446667899999988875 44699999999999888776644 446788999998532  22233345677877


Q ss_pred             CCC
Q 012679          433 FGA  435 (458)
Q Consensus       433 ~~~  435 (458)
                      ...
T Consensus       331 ~~~  333 (493)
T PTZ00421        331 TYH  333 (493)
T ss_pred             cCC
Confidence            543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1e-29  Score=244.33  Aligned_cols=283  Identities=22%  Similarity=0.376  Sum_probs=241.4

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEc-CCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWA-PDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR  228 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s-~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  228 (458)
                      +.+.++++..+..+.+||.++.++  ...+-|..+.|.+|+|- |+.++||++++.+.+++|++.+..+. .+.+ |...
T Consensus       292 ~~~~~l~vtaeQnl~l~d~~~l~i--~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~G-H~e~  367 (775)
T KOG0319|consen  292 SMSQLLLVTAEQNLFLYDEDELTI--VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPG-HTEA  367 (775)
T ss_pred             ccCceEEEEccceEEEEEccccEE--ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeC-chhh
Confidence            347899999999999999988876  66677778899999975 67899999999999999998887765 4554 9999


Q ss_pred             EEEEE-e-CCCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCC
Q 012679          229 VGSLA-W-NNHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSN  302 (458)
Q Consensus       229 v~~l~-~-~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~  302 (458)
                      |.++. | +|.+|++|+.|.++++|.+..+.   .++....+|...|.+++++..+ .+|+++|.|+++++|++...+..
T Consensus       368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~  447 (775)
T KOG0319|consen  368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET  447 (775)
T ss_pred             eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence            99999 5 46799999999999999884432   2355667999999999997754 57899999999999999873322


Q ss_pred             Ccceeee----eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEE
Q 012679          303 SVTQWLH----RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSS  377 (458)
Q Consensus       303 ~~~~~~~----~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~  377 (458)
                      .. ....    ....|...|++++.+| +..|+|+|+  .|++.++|++..+....++..+ ..+.++.|++..+.++++
T Consensus       448 ~~-~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~  523 (775)
T KOG0319|consen  448 AF-PIVLTCRYTERAHDKDINCVAIAP-NDKLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC  523 (775)
T ss_pred             cc-cceehhhHHHHhhcccccceEecC-CCceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEec
Confidence            11 1122    3457999999999999 588999987  9999999999988888888764 569999999999999996


Q ss_pred             ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      +  .|.+|+||.+.+..++.++.||+..|..+.|-.+|..|++++.||.|++|++.+.......-
T Consensus       524 S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD  586 (775)
T KOG0319|consen  524 S--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD  586 (775)
T ss_pred             c--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence            6  69999999999999999999999999999999999999999999999999999887765543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3.5e-29  Score=265.87  Aligned_cols=262  Identities=17%  Similarity=0.290  Sum_probs=213.2

Q ss_pred             CCEEEEEECCCCCeeeE---EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----e----eeEEecCCCccc
Q 012679          160 GSTVYLWDASDGTTSEL---VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----R----QLRTLRGGHRSR  228 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~---~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~----~~~~~~~~~~~~  228 (458)
                      +|.+++|+..+......   ..+..|.+.|++++|+|+|++||+|+.||.|+|||+...    .    ....+.  +...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCc
Confidence            67788888776544222   123458999999999999999999999999999997542    1    122233  4567


Q ss_pred             EEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679          229 VGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSV  304 (458)
Q Consensus       229 v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~  304 (458)
                      +.+++|+   +.+|++++.||.|++||+.++. .+..+.+|...|.+++|+| ++.+|++|+.||.|++||++.+..   
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~---  610 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS---  610 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---
Confidence            8999995   5799999999999999998765 4677889999999999997 789999999999999999987655   


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCC
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQ  382 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d  382 (458)
                         +..+..+ ..|.++.|.+....++++|+  .|+.|++||++++. .+..+. +...|..+.|. ++..+++  +..|
T Consensus       611 ---~~~~~~~-~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs--~s~D  681 (793)
T PLN00181        611 ---IGTIKTK-ANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS--SSTD  681 (793)
T ss_pred             ---EEEEecC-CCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE--EECC
Confidence               5555544 67899999776677888877  99999999998865 344443 45679999997 6777777  4479


Q ss_pred             CcEEEEeCCC------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          383 NQLTLWKYPS------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       383 ~~i~iwd~~~------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +.|+|||+..      ...+..+.+|...+..++|+|++.+|++|+.|+.|++|+.....
T Consensus       682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        682 NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence            9999999974      35678899999999999999999999999999999999976553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=9.8e-31  Score=221.97  Aligned_cols=236  Identities=25%  Similarity=0.469  Sum_probs=203.8

Q ss_pred             cceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          144 LNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       144 ~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      +-.+.|++   +.+++++.||+++|||... ...++..+++|...|.++.|++ ++..+++++.||+|++|+...++.+.
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~  141 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ  141 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence            44578876   5588899999999999543 3356888999999999999998 67788889999999999999999999


Q ss_pred             EecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEe
Q 012679          220 TLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd  295 (458)
                      ++.+ |...|....|+   ++++++++.||++++||++.....+ .+..|..+|.++.|+. +.+.|++|+.|+.|++||
T Consensus       142 Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD  219 (311)
T KOG0277|consen  142 TFNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWD  219 (311)
T ss_pred             eecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEe
Confidence            9998 99999999995   6899999999999999999887644 4889999999999998 677899999999999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEeCCC-CeEEEEEcCCCCe
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVDTGS-QVCALLWNKNERE  373 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~~~-~v~~~~~s~~~~~  373 (458)
                      +++.+.+     +..+.+|.-+|+.++|+|....+|++++  .|-++++||...+. ++.+.+++. -++.+.|++....
T Consensus       220 ir~~r~p-----l~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~  292 (311)
T KOG0277|consen  220 IRNLRTP-----LFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPG  292 (311)
T ss_pred             hhhcccc-----ceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCc
Confidence            9987753     7888999999999999999999999988  99999999998554 455555544 5899999998766


Q ss_pred             EEEEecCCCCcEEEEeC
Q 012679          374 LLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       374 l~~~~g~~d~~i~iwd~  390 (458)
                      .++.+| -|+.++||+.
T Consensus       293 ~vAs~g-WDe~l~Vw~p  308 (311)
T KOG0277|consen  293 QVASTG-WDELLYVWNP  308 (311)
T ss_pred             eeeecc-cccceeeecc
Confidence            666655 7999999983

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.5e-31  Score=230.53  Aligned_cols=277  Identities=14%  Similarity=0.293  Sum_probs=242.0

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEE------ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVT------VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~------~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~  214 (458)
                      ++.|-.|+|  +.+++++.||.|.+||..+|++..-..      +--+..+|.|+.|+.|...||+|+.||.|+||.+.+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            455556665  668899999999999999998643222      234678999999999999999999999999999999


Q ss_pred             ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       215 ~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      |.+++.+...|...|+|+.|  ++..+++++.|-++++.-+..+.. ++.+.+|++.|+...|.+||.++++++.||+|+
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence            99999999789999999999  578999999999999999998775 688999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeec--ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCCeEEEE
Q 012679          293 IWDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQVCALL  366 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~v~~~~  366 (458)
                      +|+..+..+      +.+++  +...+|..+..-|.+..-++++.  ..++|++-++. |+.++++..    ++...+.+
T Consensus       374 vW~~KtteC------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  374 VWHGKTTEC------LSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             EecCcchhh------hhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence            999998877      44443  34568889988888777777776  78899999984 778888754    45677888


Q ss_pred             EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      .+|.|..+.+..  .|+.++.|.+.+++...++..|...|..++-+|..+.|++-+.||.+++|.
T Consensus       445 lSpkGewiYcig--ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  445 LSPKGEWIYCIG--EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ecCCCcEEEEEc--cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999864  899999999999999999999999999999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=2.1e-29  Score=218.79  Aligned_cols=255  Identities=21%  Similarity=0.384  Sum_probs=214.6

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEE
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIIN  250 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~v  250 (458)
                      .++..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++.. .+....+++ |.+.|..+.|  +++.|++++.|.+|+.
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEE
Confidence            34567789999999999999999999999999999999643 445556665 9999999999  6899999999999999


Q ss_pred             EEccCCCeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679          251 NDVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       251 wd~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      ||+++++. ...+++|..-|+.+.-+.-| .++.+|+.|+++++||++....      ++++. ....++++.|...+..
T Consensus       117 wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~------~~t~~-~kyqltAv~f~d~s~q  188 (338)
T KOG0265|consen  117 WDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA------IKTFE-NKYQLTAVGFKDTSDQ  188 (338)
T ss_pred             Eeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch------hhccc-cceeEEEEEecccccc
Confidence            99999886 78889999999998854444 4567889999999999998776      44443 4678899999987666


Q ss_pred             EEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC----ceeeEEEeCCC-
Q 012679          330 LLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----MVKMAELSGHT-  403 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----~~~~~~~~~h~-  403 (458)
                      ++. |+  -|+.|++||++.+.....+..+ ..|+.+..+++|.++++  .+.|+++++||++.    ..++..+.+|. 
T Consensus       189 v~s-gg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls--nsMd~tvrvwd~rp~~p~~R~v~if~g~~h  263 (338)
T KOG0265|consen  189 VIS-GG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS--NSMDNTVRVWDVRPFAPSQRCVKIFQGHIH  263 (338)
T ss_pred             eee-cc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc--ccccceEEEEEecccCCCCceEEEeecchh
Confidence            654 44  8999999999999999988764 67999999999999998  56899999999864    34577777765 


Q ss_pred             ---CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          404 ---SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       404 ---~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                         .....++|+|++..+..|+.|..+++||......+.+.+
T Consensus       264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp  305 (338)
T KOG0265|consen  264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP  305 (338)
T ss_pred             hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence               335778999999999999999999999998877766654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.4e-30  Score=248.91  Aligned_cols=245  Identities=16%  Similarity=0.327  Sum_probs=198.8

Q ss_pred             EEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----------------------------------------
Q 012679          177 VTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----------------------------------------  215 (458)
Q Consensus       177 ~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----------------------------------------  215 (458)
                      ..+. .|.+.|+++.||+||+|||+|+.||.|+||.+...                                        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3445 89999999999999999999999999999976540                                        


Q ss_pred             --------------------eeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE
Q 012679          216 --------------------RQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK  274 (458)
Q Consensus       216 --------------------~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~  274 (458)
                                          ++++.+. +|.+.|..|+|+ +++|++++.|.+|++|++....+ +..+ .|...|+|++
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C-L~~F-~HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC-LKVF-SHNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhh-ccchhheecccccCCeeEeccccccEEeecCCCcce-eeEE-ecCCeeEEEE
Confidence                                0112223 599999999996 78999999999999999986665 4554 6999999999


Q ss_pred             EcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          275 WSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       275 ~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      |+| |.+||++|+-||.|+||++...+.       .....-..-|++++|.|+|...++ |  +.+|.+++|++...+..
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~V-------v~W~Dl~~lITAvcy~PdGk~avI-G--t~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKV-------VDWNDLRDLITAVCYSPDGKGAVI-G--TFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCee-------EeehhhhhhheeEEeccCCceEEE-E--EeccEEEEEEccCCeEE
Confidence            999 899999999999999999987654       233334478999999999666555 4  49999999999988776


Q ss_pred             EEEeC---------CCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCCceeeEEEeCCCC--cEEEEEEcCCCCEEEEE
Q 012679          354 NSVDT---------GSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS--RVLFMAQSPDGCTVASA  421 (458)
Q Consensus       354 ~~~~~---------~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~  421 (458)
                      .....         +..|+.+.|.|... .+++++  .|..|+|||.++...+..|+|+..  .-....|+.||++|+++
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEec--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            55421         23699999998655 355543  799999999999999999987653  33567899999999999


Q ss_pred             eCCCcEEEEecCCCC
Q 012679          422 AADETLRFWNVFGAP  436 (458)
Q Consensus       422 s~Dg~i~iW~~~~~~  436 (458)
                      +.|..|++|++....
T Consensus       565 seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  565 SEDSWVYIWKNDSFN  579 (712)
T ss_pred             ecCceEEEEeCCCCc
Confidence            999999999985444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=234.75  Aligned_cols=287  Identities=17%  Similarity=0.266  Sum_probs=243.4

Q ss_pred             CCCCCCceeeeCCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE
Q 012679          124 HIPQSSERTLDAPDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG  201 (458)
Q Consensus       124 ~i~~~~~~~l~~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g  201 (458)
                      .+|.....++++|.    ..++.+.|-.  +.++++|.|..|++|++..++.....++.+-.+.|+++.|.+++++++++
T Consensus       162 ~lpS~~~~~ld~h~----gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa  237 (459)
T KOG0288|consen  162 TLPSRALFVLDAHE----GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA  237 (459)
T ss_pred             ccchhhhhhhhccc----cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence            46667777788765    3467788855  67999999999999999888866677888888999999999999999999


Q ss_pred             ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679          202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       202 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                      +.|+.+++|++...+...++.+ |...|+++.|.  ...+++|+.|.+|+.||+....+....+.  ...+..|..+  .
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~  312 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--I  312 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec--c
Confidence            9999999999999999999998 99999999993  34499999999999999997665433333  2345555554  5


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--
Q 012679          280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--  357 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--  357 (458)
                      ..+++|-.|+.|++||++....      ......+ +.|+++..++++..++.++   .|.++.+.|+++.+....+.  
T Consensus       313 ~~~~SgH~DkkvRfwD~Rs~~~------~~sv~~g-g~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  313 SDVISGHFDKKVRFWDIRSADK------TRSVPLG-GRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             eeeeecccccceEEEeccCCce------eeEeecC-cceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeecc
Confidence            6788999999999999998876      5555554 4999999999888888774   89999999999999888774  


Q ss_pred             ---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          358 ---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS--RVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       358 ---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                         +.+..+.++|+|++.|+++  |+.||.|+||++.+++....+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       383 g~k~asDwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccccccccceeEECCCCceeee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence               4567999999999999999  88999999999999999888876554  499999999999999999999999993

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.2e-29  Score=227.29  Aligned_cols=273  Identities=20%  Similarity=0.308  Sum_probs=236.3

Q ss_pred             cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      +..++..+  +.+++++.|..+.++|...+++  +..++||...|+.+.++|+...+++++.|-.|+||...........
T Consensus       222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~--l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQI--LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             eeEEeecCCCCcceecCCCCceEEEecchhhh--hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            44555555  7899999999999999999888  8889999999999999999999999999999999999887766666


Q ss_pred             cCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          222 RGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       222 ~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      .. |..+|+.+..  +|.+|++++.||++.+.|++++..+..... ...-.+++++|+|||.+|++|..||.|+|||+..
T Consensus       300 ~~-h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  300 RP-HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cc-ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            66 9999999988  589999999999999999998876544333 2335689999999999999999999999999998


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC--CeEEEEEcCCCCeEEE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLS  376 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~  376 (458)
                      +..      +..|.+|.++|++++|+.+ ++.++++.  .|+.|++||++..+.+.++....  .+.++.|...|.+|++
T Consensus       379 ~~~------~a~Fpght~~vk~i~FsEN-GY~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  379 QTN------VAKFPGHTGPVKAISFSEN-GYWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             ccc------cccCCCCCCceeEEEeccC-ceEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence            876      7889999999999999985 56666665  89999999999999888886544  5999999999999999


Q ss_pred             EecCCCCcEEEEeCC----CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          377 SHGFTQNQLTLWKYP----SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~----~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      +  ..+  ++||-+.    ++..+.++..|.+..+++.|....++++++|.|..++++.+
T Consensus       450 ~--g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  450 A--GSD--LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             e--cce--eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            5  244  5555544    67888888899999999999999999999999999998865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.5e-28  Score=211.94  Aligned_cols=264  Identities=18%  Similarity=0.280  Sum_probs=217.8

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC--CCcEEEEEc
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM--DGLIINNDV  253 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~  253 (458)
                      .+....+.|+++.|+++|.+|++++.|-.++|||..++++++++.. +.-.|..++|  +.+.++.++.  |.+|+..++
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            3444577899999999999999999999999999999999999987 7677777888  4666666666  889999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      .+.+. ++.+.||...|.+|+.+|-+..+++++.|++|++||++..++      ...+.  ...-..+||.|. +.++|+
T Consensus        88 ~dNky-lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c------qg~l~--~~~~pi~AfDp~-GLifA~  157 (311)
T KOG1446|consen   88 HDNKY-LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC------QGLLN--LSGRPIAAFDPE-GLIFAL  157 (311)
T ss_pred             ecCce-EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC------ceEEe--cCCCcceeECCC-CcEEEE
Confidence            87764 899999999999999999999999999999999999997766      22222  222345789994 667777


Q ss_pred             eCCCCCCeEEEEECCCC--CeeEEEeC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc--
Q 012679          334 GGGGGDRCIKFWNTHTG--ACLNSVDT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--  405 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~--~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~--  405 (458)
                      +.  ....|++||++.-  .+..++..    ..+.+.+.|+|+|++|+.++  ..+.+.+.|.-+|..+.++.++...  
T Consensus       158 ~~--~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT--~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  158 AN--GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST--NASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             ec--CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe--CCCcEEEEEccCCcEeeeEeeccCCCC
Confidence            65  3449999999974  35555533    46799999999999999965  7899999999999999999887643  


Q ss_pred             -EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCCCCCccccccc
Q 012679          406 -VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQLNR  456 (458)
Q Consensus       406 -V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (458)
                       -....|+||++++++|+.||+|.+|++.++.++.+...+...+....+|++
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence             267889999999999999999999999999998887777666666666654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-28  Score=226.92  Aligned_cols=275  Identities=22%  Similarity=0.315  Sum_probs=230.5

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+..+++++  ..-++++..-.|.||+..+...  ..++......|+++.|-.||++||+|...|.|+|||..+...++.
T Consensus        28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~--~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~  105 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV--RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ  105 (487)
T ss_pred             cceeEecCCCCCCceEEecccEEEEEecchhhh--hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence            356677776  3467777788999999887665  444455577899999999999999999999999999888778888


Q ss_pred             ecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeC
Q 012679          221 LRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       221 ~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~  296 (458)
                      +.. |..+|..+.|   ++..|++|+.|+.+++||+.+... ...+.+|+..|.|.+|+|- +..+++||.||.|++||+
T Consensus       106 ~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  106 LYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             Hhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            887 9999999998   468999999999999999987764 5678899999999999995 558899999999999999


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEE-eCCCCeEEEEEcCCCCeE
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSV-DTGSQVCALLWNKNEREL  374 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l  374 (458)
                      +.....     +..+ .|..+|..+.+-|. +.++++++   ...+++||+.+|.. +... .+...|+|+.+..++..|
T Consensus       184 R~~~~~-----v~el-nhg~pVe~vl~lps-gs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL  253 (487)
T KOG0310|consen  184 RSLTSR-----VVEL-NHGCPVESVLALPS-GSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL  253 (487)
T ss_pred             ccCCce-----eEEe-cCCCceeeEEEcCC-CCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence            987531     4444 68999999999994 56667764   46899999996654 3333 377889999999999999


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ++  |.-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+=+...
T Consensus       254 lS--~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  254 LS--GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             ee--cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            99  6699999999999999998886 678999999999999999999999987764433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=232.46  Aligned_cols=246  Identities=21%  Similarity=0.325  Sum_probs=211.4

Q ss_pred             CCCEEEEEEcCCCCE-EEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee
Q 012679          183 NGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI  259 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  259 (458)
                      .+.|++++|+|...+ +|+.+ .-.+.||+..+....+++.. ....|.++.|  +|.+|++|+..|.|+++|+.+ ..+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~sr-Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSR-FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI  102 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHh-hccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence            467999999995543 55544 44799999998888887776 7888999999  699999999999999999654 445


Q ss_pred             EEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC
Q 012679          260 VETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      +..+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+.+...      ...+.+|+..|.+.+|+|....++++|+  .
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v------~~~l~~htDYVR~g~~~~~~~hivvtGs--Y  174 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV------QAELSGHTDYVRCGDISPANDHIVVTGS--Y  174 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE------EEEecCCcceeEeeccccCCCeEEEecC--C
Confidence            7888999999999999995 56678899999999999988764      5678899999999999998889999987  9


Q ss_pred             CCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCCCC
Q 012679          339 DRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       339 d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~  416 (458)
                      ||+|++||+++. ..+.+++++.+|..+.+-|.|..+++++   .+.++|||+-+|. .+..+..|...|+|+++..++.
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST  251 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence            999999999987 8899999999999999999999999975   4689999999654 4555555999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCcccccC
Q 012679          417 TVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      .|++|+-|+.|++||+.+-+.+....
T Consensus       252 rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             eEeecccccceEEEEccceEEEEeee
Confidence            99999999999999987766555443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.8e-28  Score=235.91  Aligned_cols=278  Identities=22%  Similarity=0.387  Sum_probs=237.1

Q ss_pred             ccceeeccCCCe--EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGSSNV--LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~~~~--la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .++++.-+++.+  +.|-.||.|+||+..++..  ..++.+|...|+++.|...|..||+|+.|+.|.+||+-...-+..
T Consensus        67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~--~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r  144 (888)
T KOG0306|consen   67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEI--LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR  144 (888)
T ss_pred             eEEEeeccCCcceEEEEecCceEEeeccCCCce--eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence            455665555443  5566799999999998855  889999999999999999999999999999999999998888889


Q ss_pred             ecCCCcccEEEEEe-C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          221 LRGGHRSRVGSLAW-N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       221 ~~~~~~~~v~~l~~-~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +.+ |...|+..-| + .+++++.+.|+.|++||+.+.. +..+...|.++|.++++.+  +.+++++.|+.+++|++..
T Consensus       145 L~G-Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqh-Cf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~  220 (888)
T KOG0306|consen  145 LRG-HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQH-CFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAF  220 (888)
T ss_pred             eec-chHHHhHHhccCCCeEEEEeccCceEEEEecccce-eeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeec
Confidence            998 9999999888 3 6899999999999999999765 4788889999999999987  7899999999999999811


Q ss_pred             CCCC--------------------------------Cc------------------------------------------
Q 012679          299 ASSN--------------------------------SV------------------------------------------  304 (458)
Q Consensus       299 ~~~~--------------------------------~~------------------------------------------  304 (458)
                      ..-.                                ..                                          
T Consensus       221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~  300 (888)
T KOG0306|consen  221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE  300 (888)
T ss_pred             ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence            0000                                00                                          


Q ss_pred             ----------------------------------c-------------------ee---------eeeecccccceeEEE
Q 012679          305 ----------------------------------T-------------------QW---------LHRLEEHTSAVKAIA  322 (458)
Q Consensus       305 ----------------------------------~-------------------~~---------~~~~~~h~~~v~~l~  322 (458)
                                                        .                   ..         ...+.+|...|.+++
T Consensus       301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~  380 (888)
T KOG0306|consen  301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC  380 (888)
T ss_pred             cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence                                              0                   00         022346888899999


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      +|.+ +.++++|   ..+.|++|+..+.+|++++.++ .+.+..|.|.++++++  |...|.+.+||+.+...+.+.++|
T Consensus       381 vS~d-~~~~~Sg---a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~--G~k~Gel~vfdlaS~~l~Eti~AH  453 (888)
T KOG0306|consen  381 VSSD-SILLASG---AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVL--GTKNGELQVFDLASASLVETIRAH  453 (888)
T ss_pred             eecC-ceeeeec---CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEE--eccCCceEEEEeehhhhhhhhhcc
Confidence            9984 6666766   5789999999999999999887 7888899999999999  779999999999999999999999


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++.|+.++.+||+..++|||.|.+|++|++.
T Consensus       454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~  484 (888)
T KOG0306|consen  454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFK  484 (888)
T ss_pred             ccceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence            9999999999999999999999999999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-28  Score=213.44  Aligned_cols=266  Identities=19%  Similarity=0.339  Sum_probs=222.6

Q ss_pred             CeEEEEcCCEEEEEECCCC----------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          153 NVLAIALGSTVYLWDASDG----------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~----------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+++|+....|+-+++.-.          .+.+++.+..|.++|++++.+  |.++|+|+.|-+|+|||+.....+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            4788888888888876532          234477788999999999984  8999999999999999999999999988


Q ss_pred             CCCcccEEEEEeCC----CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          223 GGHRSRVGSLAWNN----HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       223 ~~~~~~v~~l~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      . |.+.|+++.|.+    ..|++|+.||.|.+|+...- .++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.
T Consensus        81 ~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   81 S-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             c-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence            7 999999999953    37999999999999999865 46889999999999999999999999999999999999988


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH  378 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  378 (458)
                      ++...    +..+. +.+  ..+.|+|.|.++++.+    ...|-+|.+.+......+.....+.++.|... .++++  
T Consensus       159 Gr~a~----v~~L~-~~a--t~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~~L~v--  224 (362)
T KOG0294|consen  159 GRVAF----VLNLK-NKA--TLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFLDG-SELLV--  224 (362)
T ss_pred             Cccce----eeccC-Ccc--eeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeecCC-ceEEE--
Confidence            87632    22222 222  3389999887776664    46799999999888877777766777777644 45555  


Q ss_pred             cCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ--SPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       379 g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      |.+++.|.+||..+..+...+.+|..+|..+.+  .|++.+|+|++.||.|+|||+....
T Consensus       225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            668999999999999999999999999999984  5688999999999999999998663

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=6.6e-30  Score=234.86  Aligned_cols=253  Identities=18%  Similarity=0.363  Sum_probs=217.1

Q ss_pred             EEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE
Q 012679          176 LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw  251 (458)
                      ++++.+|...|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+ |..+|.+++|+  +..+++++.|+.|++|
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeecceeeeee
Confidence            678899999999999999 899999999999999999976 889999998 99999999995  7899999999999999


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      |+++++.. ..+. ....++|+.|+||+ +.+++|+.|+.|+.||+++++.      ++.+..|-+.|..+.|-+++...
T Consensus       286 DtETG~~~-~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv------vqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  286 DTETGQVL-SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV------VQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             ccccceEE-EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH------HHHHHhhhhheeeeEEccCCceE
Confidence            99999863 3332 24568899999998 8899999999999999999987      88899999999999999987766


Q ss_pred             EEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC---ceeeEEEeCCC--
Q 012679          331 LATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS---MVKMAELSGHT--  403 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~---~~~~~~~~~h~--  403 (458)
                      +.+.   .|+.+++|+.+.+..++.+...  ....++..+|+++.+++  -..++.|.+|....   ..+...++||.  
T Consensus       358 issS---Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a--Qs~dN~i~ifs~~~~~r~nkkK~feGh~va  432 (503)
T KOG0282|consen  358 ISSS---DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA--QSMDNYIAIFSTVPPFRLNKKKRFEGHSVA  432 (503)
T ss_pred             eeec---cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh--hccCceEEEEecccccccCHhhhhcceecc
Confidence            6654   8999999999998877766443  34668899999999998  55899999998653   23445677886  


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      +--..+.|||||.+|++|+.||.+.+||..+.....+..
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc
Confidence            446789999999999999999999999998777665544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1e-28  Score=220.76  Aligned_cols=246  Identities=25%  Similarity=0.431  Sum_probs=210.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---C--CCeEEEEeCCCcEEEEEccC
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---N--NHILTTGGMDGLIINNDVRV  255 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~--~~~l~sg~~dg~i~vwd~~~  255 (458)
                      .|.+.|.+|...  ++++++|+.||.+++||. .|+....+.+ |.++|.+++|   +  ...|++++.|.++++|.++.
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            478888888887  789999999999999995 5777778877 9999999999   2  35799999999999999887


Q ss_pred             CCeeE---EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC-------------------CCcceeeeeecc
Q 012679          256 RDHIV---ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS-------------------NSVTQWLHRLEE  313 (458)
Q Consensus       256 ~~~~~---~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~  313 (458)
                      +...+   ....||...|-++...++|..+++|+.|.+|.||+......                   .....++..+.+
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            65322   33449999999999999999999999999999999322111                   112345778899


Q ss_pred             cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      |..+|.++.|++  ...+++++  .|.+|+.||+.++.++..+.++..+.++.++|..+.|++  |+.|..|++||.+++
T Consensus       259 Ht~~Vs~V~w~d--~~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~--gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  259 HTEPVSSVVWSD--ATVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS--GSSDRHIRLWDPRTG  332 (423)
T ss_pred             cccceeeEEEcC--CCceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeee--cCCCCceeecCCCCC
Confidence            999999999998  56777776  999999999999999999999999999999998888888  779999999999865


Q ss_pred             e---eeEEEeCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCC
Q 012679          394 V---KMAELSGHTSRVLFMAQSPD-GCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       394 ~---~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      .   ...++.+|.+.|.++.|+|. ...|++|+.|+++++||++...
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            3   45688999999999999995 4578999999999999998876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=4.1e-28  Score=215.90  Aligned_cols=255  Identities=19%  Similarity=0.299  Sum_probs=210.6

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      +..+..|..+|.+++.+|+.+++|+|+.|..-.||++.++.....+.+ |...|+++.|  ++.+|++|+.+|.|.||+.
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            677889999999999999999999999999999999999998888887 9999999999  5899999999999999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      .++.. ...+...-..+.=+.|+|.+..|+.|+.||.+-+|.+.+...      .+.+.+|+.++++-.|.|+|+.++. 
T Consensus       136 stg~~-~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~------~kv~~Gh~~~ct~G~f~pdGKr~~t-  207 (399)
T KOG0296|consen  136 STGGE-QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL------CKVMSGHNSPCTCGEFIPDGKRILT-  207 (399)
T ss_pred             ccCce-EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce------eeEecCCCCCcccccccCCCceEEE-
Confidence            98875 334444556788899999999999999999999999988654      7888999999999999999766655 


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeCC-----------------------CCe----------------------------
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDTG-----------------------SQV----------------------------  362 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~~-----------------------~~v----------------------------  362 (458)
                      +.  .||+|++||..+++++..+...                       .++                            
T Consensus       208 gy--~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  208 GY--DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             Ee--cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            33  8999999999999988776410                       000                            


Q ss_pred             -EEEEEcCC-CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          363 -CALLWNKN-ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       363 -~~~~~s~~-~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                       .++.+.|. ...-++++|+-||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.+.+.....
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~  363 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT  363 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence             01111110 011133458889999999999887776664 888899999998 67999999999999999999988766


Q ss_pred             cCC
Q 012679          441 KSA  443 (458)
Q Consensus       441 ~~~  443 (458)
                      ...
T Consensus       364 y~G  366 (399)
T KOG0296|consen  364 YTG  366 (399)
T ss_pred             Eec
Confidence            543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8e-29  Score=241.98  Aligned_cols=250  Identities=18%  Similarity=0.329  Sum_probs=219.3

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccC
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRV  255 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~  255 (458)
                      .++.....|..++|+|...+++++-.+|.|++||.+-+.++..|.. |.++|..++|+  ..++++|+.|-.|+||+...
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            3455677899999999999999999999999999999999999998 99999999996  58999999999999999987


Q ss_pred             CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ..+ +.++.+|-..|..+.|++.-.+++++|.|.+|+||+..+.++      +..+.+|...|.|..|+| ...++++++
T Consensus        83 rrc-lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~------iavltGHnHYVMcAqFhp-tEDlIVSaS  154 (1202)
T KOG0292|consen   83 RRC-LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC------IAVLTGHNHYVMCAQFHP-TEDLIVSAS  154 (1202)
T ss_pred             cee-hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce------EEEEecCceEEEeeccCC-ccceEEEec
Confidence            664 788999999999999999999999999999999999999888      899999999999999999 477888877


Q ss_pred             CCCCCeEEEEECCCCC----------------------------eeE-EEe-CCCCeEEEEEcCCCCeEEEEecCCCCcE
Q 012679          336 GGGDRCIKFWNTHTGA----------------------------CLN-SVD-TGSQVCALLWNKNERELLSSHGFTQNQL  385 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~----------------------------~~~-~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i  385 (458)
                        -|.+||+||+..-+                            .++ .++ +...|+-++|+|.-..+++  |.+|.+|
T Consensus       155 --LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqV  230 (1202)
T KOG0292|consen  155 --LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQV  230 (1202)
T ss_pred             --ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCccee
Confidence              99999999985311                            011 111 3346889999999999988  7799999


Q ss_pred             EEEeCCCce--eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          386 TLWKYPSMV--KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       386 ~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ++|.+...+  .+.+..||.+.|.++-|+|....|++.|.|++|+|||+...+.+..
T Consensus       231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t  287 (1202)
T KOG0292|consen  231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT  287 (1202)
T ss_pred             eEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence            999987543  4567889999999999999999999999999999999987665544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-26  Score=203.30  Aligned_cols=277  Identities=16%  Similarity=0.245  Sum_probs=225.6

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCcee
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQ  217 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~  217 (458)
                      ..+++++++.  ..+++.+.|.++.|||..+++.  +.++..+.-.|..+.|......++.++.  |.+|+..++.+++.
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            3578888876  4567777888999999999987  6666666677899999887777777766  77999999999999


Q ss_pred             eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      ++.+.+ |...|.+|+.+  ++.+++++.|++|++||++...+. ..+....  -..++|.|.|-++|++...+.|++||
T Consensus        93 lRYF~G-H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq-g~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   93 LRYFPG-HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ-GLLNLSG--RPIAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             EEEcCC-CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc-eEEecCC--CcceeECCCCcEEEEecCCCeEEEEE
Confidence            999998 99999999996  589999999999999999976653 3332222  33478999999999999988999999


Q ss_pred             CCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC----eEEEEEcCC
Q 012679          296 RSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ----VCALLWNKN  370 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~----v~~~~~s~~  370 (458)
                      ++........  ...+. +.....+.|.|+|+|+.+|++.   ..+.+++.|.-+|..+.++.....    ....+|.|+
T Consensus       169 ~Rs~dkgPF~--tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd  243 (311)
T KOG1446|consen  169 LRSFDKGPFT--TFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD  243 (311)
T ss_pred             ecccCCCCce--eEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence            9987443221  11222 4467789999999999999976   688999999999998888865322    357889999


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++++++  |..||.|.+|+++++.++..+++ +.+++.++.|+|.-..++|  .+..+.+|=..
T Consensus       244 s~Fvl~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~  303 (311)
T KOG1446|consen  244 SKFVLS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPD  303 (311)
T ss_pred             CcEEEE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--cCceEEEEecc
Confidence            999999  66899999999999999999998 7899999999998666654  55689999654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=5.3e-28  Score=223.73  Aligned_cols=298  Identities=19%  Similarity=0.301  Sum_probs=227.6

Q ss_pred             CCCCCCCCceeeeCCCCCCccccceeec--cCCCeEEEEcCCEEEEEECCCCCe-----eeEEEecCCCCCEEEEEEcCC
Q 012679          122 RRHIPQSSERTLDAPDLVDDYYLNLLDW--GSSNVLAIALGSTVYLWDASDGTT-----SELVTVDDENGPVTSVNWAPD  194 (458)
Q Consensus       122 ~~~i~~~~~~~l~~~~~~~d~~~~~~~~--~~~~~la~~~d~~v~iwd~~~~~~-----~~~~~~~~h~~~V~~v~~s~~  194 (458)
                      ...||.+.|-.|...  ..  -+..+..  ++.++++|+.|..|++||...-..     ..+.-.  ....|.+++|++.
T Consensus       152 ~~~IP~shEi~l~hg--tk--~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--E~h~i~sl~ys~T  225 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHG--TK--IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--ETHQINSLQYSVT  225 (641)
T ss_pred             hhcCCccceEeccCC--ce--EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcc--cccccceeeecCC
Confidence            456787777665532  22  2444444  557899999999999999874321     112222  3456999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCceeeEEecC-----------CCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeE
Q 012679          195 GRHIAIGLNNCQVQLWDSTANRQLRTLRG-----------GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----------~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~  260 (458)
                      |..|++.+.....+|+|-...+.+...++           +|...++|.+|+   ...+++++.||++++||+.......
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            99999988888999999665554443332           699999999996   4789999999999999998654333


Q ss_pred             EEEc-----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc--ceeEEEecCCCCcEEEE
Q 012679          261 ETYR-----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS--AVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       261 ~~~~-----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~ll~s  333 (458)
                      ..++     +..-.++.++|++||++||+|+.||.|.+|+.........   ...-.+|..  .|++|+|+++|+.|+.-
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~---~~vk~AH~~g~~Itsi~FS~dg~~LlSR  382 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV---MKVKDAHLPGQDITSISFSYDGNYLLSR  382 (641)
T ss_pred             eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc---eEeeeccCCCCceeEEEeccccchhhhc
Confidence            3332     3445789999999999999999999999999865544222   334456777  89999999987776654


Q ss_pred             eCCCCCCeEEEEECCCCC-eeEEE---eCCCCeEEEEEcCCCCeEEEEec----CCCCcEEEEeCCCceeeEEEeCCCCc
Q 012679          334 GGGGGDRCIKFWNTHTGA-CLNSV---DTGSQVCALLWNKNERELLSSHG----FTQNQLTLWKYPSMVKMAELSGHTSR  405 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~-~~~~~---~~~~~v~~~~~s~~~~~l~~~~g----~~d~~i~iwd~~~~~~~~~~~~h~~~  405 (458)
                      |   .|+++++||++..+ ++...   ....+-+.++|+|+.+.|++.+.    ...|.+.+||..+.+.+..+.-.+..
T Consensus       383 g---~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aS  459 (641)
T KOG0772|consen  383 G---FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTAS  459 (641)
T ss_pred             c---CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCce
Confidence            4   89999999999754 44443   23456788999999999998542    23568999999999999999888888


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          406 VLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       406 V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      |..+.|+|.=+.|..|+.||++++|-
T Consensus       460 vv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  460 VVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEEeecchhhheeeecCCCceEEEE
Confidence            99999999888899999999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=9.3e-28  Score=209.26  Aligned_cols=247  Identities=23%  Similarity=0.424  Sum_probs=205.3

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc------------------eeeEEecCCCcccEEEEEeCC-
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN------------------RQLRTLRGGHRSRVGSLAWNN-  236 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~------------------~~~~~~~~~~~~~v~~l~~~~-  236 (458)
                      ...+..|..++.+.+|++||.++|+|+.|..|+|.|++..                  -.++++.. |...|+++.|++ 
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecch
Confidence            4556789999999999999999999999999999998621                  24566766 999999999975 


Q ss_pred             -CeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679          237 -HILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE  313 (458)
Q Consensus       237 -~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  313 (458)
                       .+|++|++|++|+++|+.....  ..+.+ ....+|.++.|+|.|.+|+.|..-.++++||+++.++-..   ...-..
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs---anPd~q  259 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS---ANPDDQ  259 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee---cCcccc
Confidence             7999999999999999975431  11122 3456899999999999999999999999999998766211   123457


Q ss_pred             cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      |.+.|+++.+++. ..+.++++  .||.|++||--+++|+.++.   .++.||+..|..++++++++  +.|..+++|.+
T Consensus       260 ht~ai~~V~Ys~t-~~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS--G~DS~vkLWEi  334 (430)
T KOG0640|consen  260 HTGAITQVRYSST-GSLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS--GKDSTVKLWEI  334 (430)
T ss_pred             cccceeEEEecCC-ccEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec--CCcceeeeeee
Confidence            9999999999995 67788877  99999999999999999885   35789999999999999995  38999999999


Q ss_pred             CCceeeEEE-------------------------------------------------eCCCCcEEEEEEcCCCCEEEEE
Q 012679          391 PSMVKMAEL-------------------------------------------------SGHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       391 ~~~~~~~~~-------------------------------------------------~~h~~~V~~l~~spdg~~l~s~  421 (458)
                      .+++.+.++                                                 .+|.+.+..+.-||.+..++||
T Consensus       335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc  414 (430)
T KOG0640|consen  335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC  414 (430)
T ss_pred             cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence            777655442                                                 2678888899999999999999


Q ss_pred             eCCCcEEEEec
Q 012679          422 AADETLRFWNV  432 (458)
Q Consensus       422 s~Dg~i~iW~~  432 (458)
                      +.|-.+|+|.-
T Consensus       415 sdD~raRFWyr  425 (430)
T KOG0640|consen  415 SDDFRARFWYR  425 (430)
T ss_pred             cccceeeeeee
Confidence            99999999964

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.7e-26  Score=225.88  Aligned_cols=245  Identities=18%  Similarity=0.302  Sum_probs=187.3

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEeCCCceee----------E---EecCCCcccEEEEEeC---CCeEEEEeCCCcEE
Q 012679          186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL----------R---TLRGGHRSRVGSLAWN---NHILTTGGMDGLII  249 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~----------~---~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~  249 (458)
                      |.....++++..++++..+.....|+...+..+          .   .+.+ |.+.|.+++|+   +.+|++|+.||+|+
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            444555556555555555555556654333221          1   2444 99999999995   47899999999999


Q ss_pred             EEEccCCC------eeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679          250 NNDVRVRD------HIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       250 vwd~~~~~------~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      +||+....      ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+..+..      +..+..|...|.+++
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~------~~~l~~h~~~V~sla  175 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA------VEVIKCHSDQITSLE  175 (493)
T ss_pred             EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE------EEEEcCCCCceEEEE
Confidence            99997643      2456788999999999999975 7999999999999999988765      677888999999999


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC--CeEEEEEcCCCCeEEEEec--CCCCcEEEEeCCCcee-eE
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLSSHG--FTQNQLTLWKYPSMVK-MA  397 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~g--~~d~~i~iwd~~~~~~-~~  397 (458)
                      |+|++ .++++++  .|+.|++||+++++.+..+..+.  .+..+.|.+++..+++++.  ..|+.|++||+++... +.
T Consensus       176 ~spdG-~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        176 WNLDG-SLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             EECCC-CEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            99975 5666666  89999999999999888876543  3457889999888876532  3589999999987653 33


Q ss_pred             EEeCC-CCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCcccc
Q 012679          398 ELSGH-TSRVLFMAQSPDGCTVASAA-ADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       398 ~~~~h-~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~~~~~  440 (458)
                      ....+ ...+....|++++.+|++++ .|+.|++||+.++.....
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            33333 34566678999999999888 599999999998765543

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.5e-26  Score=228.22  Aligned_cols=261  Identities=15%  Similarity=0.240  Sum_probs=190.8

Q ss_pred             EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCce--------eeEEecCCCcc
Q 012679          157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANR--------QLRTLRGGHRS  227 (458)
Q Consensus       157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~--------~~~~~~~~~~~  227 (458)
                      ++..+.|.+|+.....  .+..+.+|.+.|.+++|+|+ +.+||+|+.||.|+|||+.++.        .+..+.+ |..
T Consensus        50 GG~~gvI~L~~~~r~~--~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP--PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKK  126 (568)
T ss_pred             CCceeEEEeeecCCCc--eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCC
Confidence            4456789999876653  47788999999999999996 7899999999999999997642        2334555 999


Q ss_pred             cEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679          228 RVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV  304 (458)
Q Consensus       228 ~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~  304 (458)
                      .|.+++|++   .+|++++.|+.|++||++++.. ...+. |...|.+++|+|+|.+|++++.|+.|+|||++++..   
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---  201 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---  201 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE---
Confidence            999999974   3568999999999999998765 33443 567899999999999999999999999999998766   


Q ss_pred             ceeeeeecccccceeEE-----EecCCCCcEEEEeCC-CCCCeEEEEECCC-CCeeEEEeCCCCeE--EEEEcCC-CCeE
Q 012679          305 TQWLHRLEEHTSAVKAI-----AWCPFQSNLLATGGG-GGDRCIKFWNTHT-GACLNSVDTGSQVC--ALLWNKN-EREL  374 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l-----~~~p~~~~ll~s~~g-~~d~~i~lwd~~~-~~~~~~~~~~~~v~--~~~~s~~-~~~l  374 (458)
                         +..+.+|.+.+.+.     .|++++..++++|.. ..++.|+|||+++ ++++..+.......  ...|.++ +.++
T Consensus       202 ---i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        202 ---ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             ---EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence               67788888765433     345776666666531 1225899999995 66776665544333  2344444 5566


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++  |..|+.|++|++..+. +..+.  .+..++.+++|.|....  =...-+..|++.+.
T Consensus       279 ls--GkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~~--dv~~cEi~R~~kl~  334 (568)
T PTZ00420        279 LI--GKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQIC--DVYKCEIGRVYKNE  334 (568)
T ss_pred             EE--EECCCeEEEEEccCCc-EEeecccccCCCccceEEcccccc--CchhhhHhHHhhhc
Confidence            55  5689999999997653 22232  25677889999996431  11222344555554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.6e-27  Score=236.43  Aligned_cols=287  Identities=21%  Similarity=0.372  Sum_probs=228.3

Q ss_pred             cccceeeccC--CCeEEEE--cCCEEEEEECCC---------C-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679          142 YYLNLLDWGS--SNVLAIA--LGSTVYLWDASD---------G-TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV  207 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~--~d~~v~iwd~~~---------~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v  207 (458)
                      ..+-.++.++  ..++++|  .|+.+.||+.+.         . -...++++..|.+.|+|+.|+|||++||+|++|+.|
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v   93 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV   93 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence            3455677776  4577777  788888998652         1 124577888999999999999999999999999999


Q ss_pred             EEEeCCC------------------ceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccc
Q 012679          208 QLWDSTA------------------NRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHN  267 (458)
Q Consensus       208 ~iwd~~~------------------~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~  267 (458)
                      .||+...                  .+.+..+.+ |...|..++|+  +.+|++++.|+.|.+|+.++. ..++.+.+|.
T Consensus        94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~  171 (942)
T KOG0973|consen   94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQ  171 (942)
T ss_pred             EEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeeccc
Confidence            9998662                  134556666 99999999995  799999999999999999988 5689999999


Q ss_pred             cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc------ccceeEEEecCCCCcEEEEeCC-CCCC
Q 012679          268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH------TSAVKAIAWCPFQSNLLATGGG-GGDR  340 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~p~~~~ll~s~~g-~~d~  340 (458)
                      +.|.++.|.|-|+|||+-+.|++|+||++..-..      .+.+.++      ..-+..+.|+|||.++.+..+- ..-.
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i------~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI------EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEccccee------eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            9999999999999999999999999999766443      3333332      3457889999998777654330 1234


Q ss_pred             eEEEEECCCCCeeEEE-eCCCCeEEEEEcCC---------------CCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CC
Q 012679          341 CIKFWNTHTGACLNSV-DTGSQVCALLWNKN---------------ERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HT  403 (458)
Q Consensus       341 ~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~---------------~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~  403 (458)
                      ++.|.+-.+.+.-..+ .|..++..+.|+|.               ..|.+++.|..|+.|.||.....+++..... ..
T Consensus       246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~  325 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN  325 (942)
T ss_pred             eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence            6888888777754444 56778999999872               1234666788999999999988888765532 34


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ..|..++|+|||..|+.++.||+|.+..+.+.+
T Consensus       326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  326 KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            679999999999999999999999999997643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.5e-27  Score=228.12  Aligned_cols=276  Identities=21%  Similarity=0.286  Sum_probs=225.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEE-----------------------------------EecCCCCCEEEEEEcCCCC
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELV-----------------------------------TVDDENGPVTSVNWAPDGR  196 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~-----------------------------------~~~~h~~~V~~v~~s~~g~  196 (458)
                      .-+++++.|++|++||++.+....+.                                   ..-+....+.+++.+|+|+
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq  472 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ  472 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence            44889999999999998763211110                                   0112345699999999999


Q ss_pred             EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceE
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC  271 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  271 (458)
                      +||+|..-|+++|||+...+....+.. |...|.|+.++     .++|+++++|..|+|||+...-.++.++.+|...|+
T Consensus       473 hLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT  551 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT  551 (1080)
T ss_pred             eecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence            999999999999999999988888887 99999999994     478999999999999999887778899999999999


Q ss_pred             eEEEcCCC--CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          272 GLKWSASG--QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       272 ~l~~spd~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      +++|.-+|  ..++++|.|..|.+--.+...... ..+..+-.-....+..++..|..+ ++++++  .|+.|+|||+.+
T Consensus       552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~-~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c--QDrnirif~i~s  627 (1080)
T KOG1408|consen  552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGR-LFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC--QDRNIRIFDIES  627 (1080)
T ss_pred             EEEEeecCCceEEEeccCchhhheehhccccCce-eccccccccccceEEEeeeCCCcc-eEEEEe--cccceEEEeccc
Confidence            99998877  678999999888654333222110 000111112245688999999644 555554  999999999999


Q ss_pred             CCeeEEEeC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          350 GACLNSVDT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       350 ~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      |+..+.++.    .+....+...|.|.|+++++  .|.++.++|+.++++++++.||...|+.+.|.+|.+.|++++.||
T Consensus       628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc--sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg  705 (1080)
T KOG1408|consen  628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC--SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG  705 (1080)
T ss_pred             cceeeeecccccCCCceEEEEECCCccEEEEee--cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc
Confidence            999999964    35688899999999999965  899999999999999999999999999999999999999999999


Q ss_pred             cEEEEecCC
Q 012679          426 TLRFWNVFG  434 (458)
Q Consensus       426 ~i~iW~~~~  434 (458)
                      .|.||.+..
T Consensus       706 CIFvW~lp~  714 (1080)
T KOG1408|consen  706 CIFVWKLPL  714 (1080)
T ss_pred             eEEEEECch
Confidence            999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=214.85  Aligned_cols=255  Identities=17%  Similarity=0.271  Sum_probs=215.1

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIIN  250 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~v  250 (458)
                      ...+..|.+.|.-+.||++|+|||+++.|.+..+|++....   ..+++.+ |..+|..+.|+  .++|++++.+..+.+
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheee
Confidence            34567899999999999999999999999999999876544   4666766 99999999995  589999999999999


Q ss_pred             EEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCc
Q 012679          251 NDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSN  329 (458)
Q Consensus       251 wd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~  329 (458)
                      ||+.++.....--.+|...+.+++|.|||..+++|+.|++|..||+.....       ...++ ....|.+++..+||..
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-------~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-------GNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-------hcccccccceeEEEEEcCCCcE
Confidence            999998763333345668899999999999999999999999999876542       12222 2356899999999999


Q ss_pred             EEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc--EE
Q 012679          330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VL  407 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~--V~  407 (458)
                      +++++   .|..|++++..+......+....++++++.+.+++++++  .-.+..+.+||+.....+..+.||...  |.
T Consensus       369 vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  369 VLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYFGHKQGHFII  443 (519)
T ss_pred             EEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhhcccccceEE
Confidence            99987   799999999999888888888999999999999999998  458999999999999999999999754  44


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679          408 FMAQSP-DGCTVASAAADETLRFWNVFGAPQVISKSA  443 (458)
Q Consensus       408 ~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~  443 (458)
                      .-+|-- +..++++|++|+.|+||+-..+..+.....
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            556654 558999999999999999998887766554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=224.83  Aligned_cols=274  Identities=20%  Similarity=0.315  Sum_probs=236.3

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCC-cccEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH-RSRVG  230 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~-~~~v~  230 (458)
                      +.++.|+.+|.+.|||+.+++.  ++++.++...|+++.-+|-=..+|+|..+|+|.|++++.++.+.+++  | .++|+
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~--v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~Vt  248 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKV--VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVT  248 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcE--EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--cccccee
Confidence            6789999999999999999998  89999999999999999988899999999999999999999999999  6 49999


Q ss_pred             EEEe--CC-CeEEEEeCCCcEEEEEccCCCee------------------------------------------------
Q 012679          231 SLAW--NN-HILTTGGMDGLIINNDVRVRDHI------------------------------------------------  259 (458)
Q Consensus       231 ~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~------------------------------------------------  259 (458)
                      +++|  +| .++++|+..|.+.+||++.....                                                
T Consensus       249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR  328 (910)
T KOG1539|consen  249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR  328 (910)
T ss_pred             EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence            9999  45 67888888899999998753211                                                


Q ss_pred             --------------------------------------------------------------------------------
Q 012679          260 --------------------------------------------------------------------------------  259 (458)
Q Consensus       260 --------------------------------------------------------------------------------  259 (458)
                                                                                                      
T Consensus       329 ~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE  408 (910)
T KOG1539|consen  329 SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE  408 (910)
T ss_pred             eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence                                                                                            


Q ss_pred             ---------------EEE-----------Eccc------ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679          260 ---------------VET-----------YRGH------NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW  307 (458)
Q Consensus       260 ---------------~~~-----------~~~h------~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  307 (458)
                                     ..+           ...+      ...+++++.++.|++.+.|...|.|-+|++.++-.      
T Consensus       409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------  482 (910)
T KOG1539|consen  409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------  482 (910)
T ss_pred             hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------
Confidence                           000           0011      14567778888899999999999999999988765      


Q ss_pred             eeee---cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          308 LHRL---EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       308 ~~~~---~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                      ...+   ..|..+|+.++...- +.++++++  .+|.+++||..+...+..+..+..+..+.++.....++++  .+|-.
T Consensus       483 r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~--~ddf~  557 (910)
T KOG1539|consen  483 RKSFGDSPAHKGEVTGLAVDGT-NRLLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA--LDDFS  557 (910)
T ss_pred             ecccccCccccCceeEEEecCC-CceEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh--cCcee
Confidence            4444   479999999999874 45566655  8999999999999999999999999999999999988884  47899


Q ss_pred             EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      |.++|..+.+.+.++.||.++|++++|||||++|++++.|++|++||+-++..+--
T Consensus       558 I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~  613 (910)
T KOG1539|consen  558 IRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG  613 (910)
T ss_pred             EEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence            99999999999999999999999999999999999999999999999988876544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=3.5e-27  Score=215.83  Aligned_cols=245  Identities=25%  Similarity=0.483  Sum_probs=203.3

Q ss_pred             CCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCceee----------EEecCCCcccEEEEEeC---CCeEEEEeCCC
Q 012679          181 DENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQL----------RTLRGGHRSRVGSLAWN---NHILTTGGMDG  246 (458)
Q Consensus       181 ~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~----------~~~~~~~~~~v~~l~~~---~~~l~sg~~dg  246 (458)
                      .|.+.|+.+.+-|. ...+|+++..+.|.|||.....-.          ..+.+ |...-.+|+|+   ...|++|+.|+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeeccCCC
Confidence            58899999999995 457777889999999997643211          24555 88878889996   47899999999


Q ss_pred             cEEEEEccCCCe------eEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccccee
Q 012679          247 LIINNDVRVRDH------IVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK  319 (458)
Q Consensus       247 ~i~vwd~~~~~~------~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  319 (458)
                      .|++||+.....      ....+.+|...|..++|++ +..+|++++.|+.+.|||+++. .   .++.+...+|.+.|.
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~---~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T---SKPSHSVKAHSAEVN  276 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C---CCCcccccccCCcee
Confidence            999999976543      3467789999999999999 5678899999999999999963 1   123667789999999


Q ss_pred             EEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----
Q 012679          320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----  393 (458)
Q Consensus       320 ~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----  393 (458)
                      |++|+|.+.++||+|+  .|++|.+||+++.. ++.++. +...|..+.|+|+...+++++| .|+.+.|||+..-    
T Consensus       277 ~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEecccccccc
Confidence            9999999999999987  99999999999854 556664 4567999999999999998877 8999999999642    


Q ss_pred             ----------eeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecC
Q 012679          394 ----------VKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWNVF  433 (458)
Q Consensus       394 ----------~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~  433 (458)
                                +.+..-.||+..|..+.|+|+.. .|+|++.|+.+.||+..
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                      23455679999999999999765 57888999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.1e-26  Score=198.28  Aligned_cols=252  Identities=21%  Similarity=0.334  Sum_probs=211.2

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec-CCCcccEEEEEeC---CCeEEEEeCCCcEEEEE
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR-GGHRSRVGSLAWN---NHILTTGGMDGLIINND  252 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd  252 (458)
                      ..+.+|...|.+|+|+-+|..|++|+.|+++.+|+++..+...... .+|.+.|-.++|+   +..+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            3456788899999999999999999999999999998876554433 2488999999994   68999999999999999


Q ss_pred             ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      ++...+. .......+. .-+.|+|+|++++.++.|..|.+.|.++.+.      +.. ......+..++|+-.+..+++
T Consensus        94 ~r~~k~~-~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~------~~~-~~~~~e~ne~~w~~~nd~Ffl  164 (313)
T KOG1407|consen   94 IRSGKCT-ARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKI------VNE-EQFKFEVNEISWNNSNDLFFL  164 (313)
T ss_pred             eccCcEE-EEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccce------eeh-hcccceeeeeeecCCCCEEEE
Confidence            9988764 333333333 3588999999999999999999999988765      222 234556788999965555555


Q ss_pred             EeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          333 TGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      +.   ..|+|.|.....-+++.+++. .....++.|+|+|+++++  |..|-.+.+||+...-++..+..+.-+|..+.|
T Consensus       165 t~---GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSF  239 (313)
T KOG1407|consen  165 TN---GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSF  239 (313)
T ss_pred             ec---CCceEEEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEe
Confidence            54   479999999999999999865 567889999999999999  779999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          412 SPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      |.||++||+|++|-.|-|=++.++.++.+..
T Consensus       240 S~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  240 SHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             ccCcceeeccCccceEEeEecccCCeEEEee
Confidence            9999999999999999888888888776644

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.9e-27  Score=203.42  Aligned_cols=270  Identities=19%  Similarity=0.327  Sum_probs=228.0

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC------CC-----------
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS------TA-----------  214 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~------~~-----------  214 (458)
                      ..+-+++.|.+.+||.+++|.+  +.++.+|.+.|.+|+|++.+.++++++.|++..||..      ..           
T Consensus       161 pi~gtASADhTA~iWs~Esg~C--L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe  238 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLESGAC--LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE  238 (481)
T ss_pred             cceeecccccceeEEeeccccc--eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence            3456677799999999999998  8999999999999999999999999999999999951      11           


Q ss_pred             -------------------c----eeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc
Q 012679          215 -------------------N----RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE  269 (458)
Q Consensus       215 -------------------~----~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~  269 (458)
                                         +    ..+..+.+ |.+.|.+..|  .+..+++++.|.+..+||++++.. +..+.+|..+
T Consensus       239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~-v~~LtGHd~E  316 (481)
T KOG0300|consen  239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV-VNILTGHDSE  316 (481)
T ss_pred             hhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCce-eccccCcchh
Confidence                               0    02334444 8999999999  689999999999999999998874 7899999999


Q ss_pred             eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .+.++-+|..+++++.+.|-+.++||++..-     ..+..|++|...|+++.|.-+  .-+++|+  .|.+|++||+++
T Consensus       317 LtHcstHptQrLVvTsSrDtTFRLWDFReaI-----~sV~VFQGHtdtVTS~vF~~d--d~vVSgS--DDrTvKvWdLrN  387 (481)
T KOG0300|consen  317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-----QSVAVFQGHTDTVTSVVFNTD--DRVVSGS--DDRTVKVWDLRN  387 (481)
T ss_pred             ccccccCCcceEEEEeccCceeEeccchhhc-----ceeeeecccccceeEEEEecC--CceeecC--CCceEEEeeecc
Confidence            9999999999999999999999999998432     227789999999999999874  4455655  999999999998


Q ss_pred             C-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee----EEEeCCCCcEEEEEEcCCC--CEEEEEe
Q 012679          350 G-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM----AELSGHTSRVLFMAQSPDG--CTVASAA  422 (458)
Q Consensus       350 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~----~~~~~h~~~V~~l~~spdg--~~l~s~s  422 (458)
                      . .++.++...++++.++.+..+..|+.-+  ++.+|++||+.....-    ..-++|...|+|++|..+.  .-|+++|
T Consensus       388 MRsplATIRtdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG  465 (481)
T KOG0300|consen  388 MRSPLATIRTDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG  465 (481)
T ss_pred             ccCcceeeecCCccceeEeecCCceEEecc--CCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccc
Confidence            6 4788999999999999999999999855  7889999999754321    1346899999999998643  4588999


Q ss_pred             CCCcEEEEecCCCC
Q 012679          423 ADETLRFWNVFGAP  436 (458)
Q Consensus       423 ~Dg~i~iW~~~~~~  436 (458)
                      .|..+.=|++..+.
T Consensus       466 FDR~v~gW~in~p~  479 (481)
T KOG0300|consen  466 FDRMVAGWKINTPT  479 (481)
T ss_pred             ccceeeeeEecccC
Confidence            99999999987543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.6e-27  Score=208.93  Aligned_cols=247  Identities=17%  Similarity=0.278  Sum_probs=208.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-------CCcccEEEEEe--CCCeEEEEeCCCcEEEEE
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-------GHRSRVGSLAW--NNHILTTGGMDGLIINND  252 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-------~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd  252 (458)
                      ....+.|..|+|||+||++|+.||-|.+||..+|+..+.++-       -+..+|.|++|  +...|++|+.||.|++|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            456789999999999999999999999999999986554431       27789999999  468999999999999999


Q ss_pred             ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      ++++.++.+.-..|+..|+++.|+.|+..+++++.|.+++|.-+.+++.      +..+.+|...|+...|.++|..++.
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~------LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC------LKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh------HHHhcCccccccceEEcCCCCeEEE
Confidence            9999875555559999999999999999999999999999999999988      8899999999999999998877766


Q ss_pred             EeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---CCCcE
Q 012679          333 TGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG---HTSRV  406 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~---h~~~V  406 (458)
                      +.   .||+|++|+..+.+|+.++..   ..+|.++..-|....-++.+ ...++|.|.++. ++.+..+..   ..+..
T Consensus       366 aS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC-Nrsntv~imn~q-GQvVrsfsSGkREgGdF  440 (508)
T KOG0275|consen  366 AS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC-NRSNTVYIMNMQ-GQVVRSFSSGKREGGDF  440 (508)
T ss_pred             ec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE-cCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence            54   799999999999999999865   34688888888765544443 367888888874 566666642   23556


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          407 LFMAQSPDGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       407 ~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      .+.+.||.|.++...+.|+.++.|.+..+....
T Consensus       441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLER  473 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence            678899999999999999999999998776543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.7e-28  Score=214.69  Aligned_cols=245  Identities=18%  Similarity=0.319  Sum_probs=215.5

Q ss_pred             EEEecCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679          176 LVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~  254 (458)
                      +..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.++..++.. |.+.|..|+++...+++++.|.+|+.|-+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQTSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecccceEEecCCcceeeeecc
Confidence            45668999999999999976 7899999999999999999999999998 999999999998999999999999999987


Q ss_pred             CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      ..  +..++.+ ...+.++.-+..+..+|+||.  .|.|||..-..+      +..+.-....|.++.|+|....+|+++
T Consensus       138 ~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P------v~smswG~Dti~svkfNpvETsILas~  206 (433)
T KOG0268|consen  138 GP--PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP------VSSMSWGADSISSVKFNPVETSILASC  206 (433)
T ss_pred             CC--cceeeec-cccccccccccccccccccCc--eeeecccccCCc------cceeecCCCceeEEecCCCcchheeee
Confidence            64  3455544 456778888888889999986  599999877665      777777778899999999999999998


Q ss_pred             CCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeEEEeCCCCcEEEEEEcC
Q 012679          335 GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~~~~~h~~~V~~l~~sp  413 (458)
                      +  .|+.|.+||++.+.+++.+-....-+.++|+|.+-.+++  |.+|..++.||++.. +++....+|.+.|.+++|||
T Consensus       207 ~--sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  207 A--SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             c--cCCceEEEecccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            7  999999999999999999988889999999995544444  779999999999876 46777889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCC
Q 012679          414 DGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      .|+-+++||.|.+|+||.+..+.
T Consensus       283 tG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  283 TGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             CcchhccccccceEEEeecCCCc
Confidence            99999999999999999997654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=9e-26  Score=192.61  Aligned_cols=274  Identities=16%  Similarity=0.294  Sum_probs=229.4

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      .+..+.|+.  ..++.++.|+++.+|+++......-....+|.+.|-.++|+| ....|++++.|.+|++||+..+++..
T Consensus        22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~  101 (313)
T KOG1407|consen   22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA  101 (313)
T ss_pred             cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence            356788875  679999999999999999886655556778999999999998 56789999999999999999999999


Q ss_pred             EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.. ....+. +.|  ++.+++.++.|..|...|.++.+.  ..-......+..+.|+-++.+++.....|.|.|....
T Consensus       102 ~i~~-~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~--~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp  177 (313)
T KOG1407|consen  102 RIET-KGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKI--VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP  177 (313)
T ss_pred             Eeec-cCcceE-EEEcCCCCEEEEecCcccEEEEEecccce--eehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence            8885 333333 444  689999999999999999987653  2223345678889999888887777777999999887


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLS  376 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  376 (458)
                      ..+.      ++.+++|.....||.|+|+|. .+|+|+  .|..+.+||+...-|++.+. ..-+|..+.|+.+|++|++
T Consensus       178 sLkp------v~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  178 SLKP------VQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS  248 (313)
T ss_pred             cccc------ccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence            6655      899999999999999999755 566665  99999999999999999885 4678999999999999999


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEec
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---------ETLRFWNV  432 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---------g~i~iW~~  432 (458)
                        |.+|..|-|=++++|..+.+++ +.++...++|+|...+||-++.|         |+|++|-+
T Consensus       249 --aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  249 --ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             --cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence              6699999999999999999986 78889999999999999988765         56666654

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=2.3e-25  Score=221.31  Aligned_cols=223  Identities=17%  Similarity=0.284  Sum_probs=173.7

Q ss_pred             EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCe-------eEEEEcccccce
Q 012679          201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDH-------IVETYRGHNQEV  270 (458)
Q Consensus       201 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~-------~~~~~~~h~~~v  270 (458)
                      |+.+|.|++|+......+..+.+ |...|.+++|+   +.+|++|+.||.|++||+.+...       .+..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            56678999999888777888887 99999999996   47999999999999999976431       234678999999


Q ss_pred             EeEEEcCCCCE-EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          271 CGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       271 ~~l~~spd~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .+++|+|++.. |++++.|++|+|||++.+..      +..+. |...|.+++|+|++. ++++++  .|+.|++||+++
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rs  198 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRK  198 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCC
Confidence            99999999876 57899999999999988764      44443 567899999999866 455554  899999999999


Q ss_pred             CCeeEEEeCCC-Ce-----EEEEEcCCCCeEEEEecCCC---CcEEEEeCCC-ceeeEEEe--CCCCcEEEEEEcCCCCE
Q 012679          350 GACLNSVDTGS-QV-----CALLWNKNERELLSSHGFTQ---NQLTLWKYPS-MVKMAELS--GHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       350 ~~~~~~~~~~~-~v-----~~~~~s~~~~~l~~~~g~~d---~~i~iwd~~~-~~~~~~~~--~h~~~V~~l~~spdg~~  417 (458)
                      ++.+.++..+. .+     ....|++++.+++++ |+++   ++|+|||++. .+++..+.  .+.+.+......++|.+
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l  277 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI  277 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence            99988886543 22     223356888888876 3333   4799999985 45555443  33344444455667999


Q ss_pred             EEEEeCCCcEEEEecCCC
Q 012679          418 VASAAADETLRFWNVFGA  435 (458)
Q Consensus       418 l~s~s~Dg~i~iW~~~~~  435 (458)
                      +++|+.|++|++|++..+
T Consensus       278 ~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEEECCCeEEEEEccCC
Confidence            999999999999999765

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.6e-27  Score=226.62  Aligned_cols=286  Identities=22%  Similarity=0.363  Sum_probs=229.3

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEe--cCC---CCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC--
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTV--DDE---NGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA--  214 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~--~~h---~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~--  214 (458)
                      .|.++-++ .+-++++....+.||.+.......-+.+  ...   .-.+..|+|.. +.++||+++..|.|.+||+..  
T Consensus        42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~  121 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI  121 (839)
T ss_pred             cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence            44555555 3456666677888887765432222222  111   12356788886 678999999999999999987  


Q ss_pred             -ceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCC
Q 012679          215 -NRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDN  289 (458)
Q Consensus       215 -~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg  289 (458)
                       .+.+..|.. |.-.+.++.|+   +++|++|+.||.|++||++.... ..++.+....|..++|+| .+.+|+++...|
T Consensus       122 rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  122 RNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecCCc
Confidence             566666776 99999999995   79999999999999999997765 566777888999999999 688999999999


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeCCCCeEEEEE
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDTGSQVCALLW  367 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~~~~v~~~~~  367 (458)
                      .+++||++....     +..++.+|.++|.++.|+| ...+||+||  .|+.|+|||+.+++  .+.++.+..++..+.|
T Consensus       200 ~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP-nr~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkW  271 (839)
T KOG0269|consen  200 YLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP-NREWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW  271 (839)
T ss_pred             eEEEeeccCchh-----HHHHhhcccCceEEEeecC-CCceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeee
Confidence            999999998754     3778899999999999999 688899987  99999999998654  6778888999999999


Q ss_pred             cCCCCeEEEEec-CCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          368 NKNERELLSSHG-FTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       368 s~~~~~l~~~~g-~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      -|...+.++++. ..|-.|+|||++. .-+..++..|+..++.++|-. |...+.+++.||+|..-.+.+.....
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi  346 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI  346 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence            999887765543 3577899999975 567788999999999999965 56788999999999877776655443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.5e-25  Score=193.65  Aligned_cols=264  Identities=16%  Similarity=0.252  Sum_probs=203.9

Q ss_pred             ccceeeccC--CCeE-EEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWGS--SNVL-AIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~--~~~l-a~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      .+..++|++  .+++ +++.||+|++|+++. |.... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~  106 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-V  106 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-e
Confidence            467788887  4444 888999999999987 44433 4456789999999999999999999999999999999995 4


Q ss_pred             EEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679          219 RTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW  294 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw  294 (458)
                      ..+.. |..+|.++.|=    -..|++|+.|.+|+.||.+.... +.++. -...+.++..  -..+++++..++.|.+|
T Consensus       107 ~~v~~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  107 SQVAA-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQ-LPERVYAADV--LYPMAVVATAERHIAVY  181 (347)
T ss_pred             eeeee-cccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeee-ccceeeehhc--cCceeEEEecCCcEEEE
Confidence            55555 99999999992    25789999999999999997664 33332 2445655544  34578889999999999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeCC----------CCe
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDTG----------SQV  362 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~~----------~~v  362 (458)
                      +++.+....    ......-.-.++|++..++.... +.|+  .+|.+.+..+..+..  -.++.++          ..|
T Consensus       182 nL~n~~te~----k~~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  182 NLENPPTEF----KRIESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             EcCCCcchh----hhhcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence            998765411    01111223467889888876555 5555  899999999887632  2233322          137


Q ss_pred             EEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          363 CALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      ++++|+|....|++++  .||++.+||-....++.+.+.|..+|++.+|+.+|.++|-+.
T Consensus       255 Nsi~FhP~hgtlvTaG--sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAG--SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             cceEeecccceEEEec--CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            8899999999999864  799999999999999999999999999999999999987653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.1e-26  Score=208.65  Aligned_cols=273  Identities=19%  Similarity=0.283  Sum_probs=216.9

Q ss_pred             CEEEEEECCCCCeeeEEEecCC-CCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679          161 STVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N  236 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~  236 (458)
                      .++.+||+.+|..  +.++++. ...-.++..- .+.|++++.. ...|.+|.+........... -+++|.+++-+  |
T Consensus        18 ~~~~~~dl~TGt~--~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-~Pg~v~al~s~n~G   93 (476)
T KOG0646|consen   18 INCIVWDLRTGTS--LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-LPGPVHALASSNLG   93 (476)
T ss_pred             cceeEEecCCCce--eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc-cccceeeeecCCCc
Confidence            4699999999986  6666543 1111111111 3467766644 44799999877665553333 67789999884  6


Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC---CCCcceeeeeecc
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS---SNSVTQWLHRLEE  313 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~  313 (458)
                      .+|+.|+..|.|++|.+.++.. +..+.+|-+.|+++.|+-||.+|++||.||.|.+|++...-   ......+++.+..
T Consensus        94 ~~l~ag~i~g~lYlWelssG~L-L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~  172 (476)
T KOG0646|consen   94 YFLLAGTISGNLYLWELSSGIL-LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD  172 (476)
T ss_pred             eEEEeecccCcEEEEEeccccH-HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence            8888888999999999998874 56778999999999999999999999999999999864321   1113456889999


Q ss_pred             cccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          314 HTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       314 h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      |.-+|+.+...+-+ ...+++.+  .|+++++||+..|..+.++..+..+.+++.+|.+..+++  |..+|.|.+.++..
T Consensus       173 HtlsITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  173 HTLSITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFK  248 (476)
T ss_pred             CcceeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhc
Confidence            99999999988742 34566666  999999999999999999999999999999999999999  88999999887643


Q ss_pred             ----------------ceeeEEEeCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          393 ----------------MVKMAELSGHTS--RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       393 ----------------~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                                      +..+..+.||.+  .|+|++++-||..|++|+.||+|+|||+...+.+....
T Consensus       249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence                            234667789998  89999999999999999999999999998876655443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.2e-27  Score=213.19  Aligned_cols=254  Identities=23%  Similarity=0.343  Sum_probs=214.6

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw  251 (458)
                      ...+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+ ..+.|+++.|+  +..+++++.|+.+++|
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeecCCCceeee
Confidence            45667889999999999998899999999999999987776  5666665 77889999995  7899999999999999


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      ++...+ ...++.+|+..|+++.|......+++|+.|.+|++||+....+      ..++. ....+..|+..   ...+
T Consensus       247 nvd~~r-~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C------~kt~l-~~S~cnDI~~~---~~~~  315 (459)
T KOG0288|consen  247 NVDSLR-LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC------SKTVL-PGSQCNDIVCS---ISDV  315 (459)
T ss_pred             eccchh-hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe------ecccc-ccccccceEec---ceee
Confidence            998665 4788999999999999988777799999999999999988665      22221 23344555544   3566


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC----CcEE
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT----SRVL  407 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~----~~V~  407 (458)
                      ++|.  .|++|++||.++..+...++.++.|+++..++++..++++  ..|.++.++|+++.+....+.+..    ...+
T Consensus       316 ~SgH--~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss--sRDdtl~viDlRt~eI~~~~sA~g~k~asDwt  391 (459)
T KOG0288|consen  316 ISGH--FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS--SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT  391 (459)
T ss_pred             eecc--cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee--cCCCceeeeecccccEEEEeeccccccccccc
Confidence            6655  9999999999999999999999999999999999999996  389999999999998888775432    3488


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK  445 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~  445 (458)
                      .+.|||++.|+++||.||.|+||++++++..+......
T Consensus       392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~  429 (459)
T KOG0288|consen  392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST  429 (459)
T ss_pred             eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence            99999999999999999999999999988776655443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=7.5e-26  Score=227.05  Aligned_cols=248  Identities=23%  Similarity=0.423  Sum_probs=208.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEeCCC------------ceeeEEecCCCcccEEEEEe--CCCeEEEEeC
Q 012679          181 DENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDSTA------------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGM  244 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~--~dg~v~iwd~~~------------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~  244 (458)
                      .++..|.+|..+|||..+|+|+  .||.+.||+.+.            .+.+.++.. |.+.|.|+.|  ||.+||+|+.
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEeeccC
Confidence            3456799999999999999999  899999997532            234455555 9999999999  6899999999


Q ss_pred             CCcEEEEEccC------CC-----------eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679          245 DGLIINNDVRV------RD-----------HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW  307 (458)
Q Consensus       245 dg~i~vwd~~~------~~-----------~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  307 (458)
                      |+.|.||+...      ..           ..+..+.+|...|..++|+|++.+|++++.|++|.||+..+...      
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~------  163 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL------  163 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee------
Confidence            99999999872      00           24667889999999999999999999999999999999998865      


Q ss_pred             eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-------CCeEEEEEcCCCCeEEEEecC
Q 012679          308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-------SQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       308 ~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      +..+.+|.+.|..+.|.|-|. ++|+-+  .|++|++|++.+..+.+.+...       .....+.|+|||.+|++.++.
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gk-y~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGK-YFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             eeeeecccccccceEECCccC-eeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            889999999999999999655 555555  8999999998887777777432       347889999999999998765


Q ss_pred             CCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCC------C-----------CEEEEEeCCCcEEEEecCCCCcc
Q 012679          381 TQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPD------G-----------CTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       381 ~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd------g-----------~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      ..+  .+.|.+-.+.+.-..|-||..++.+++|+|.      .           ..+|+|+.|++|-||......+.
T Consensus       241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            544  6889998888888899999999999999981      1           16889999999999998555443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=5.8e-27  Score=198.61  Aligned_cols=263  Identities=18%  Similarity=0.313  Sum_probs=228.6

Q ss_pred             EEecCCCCCEEEEEEcC---CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEE
Q 012679          177 VTVDDENGPVTSVNWAP---DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINN  251 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~---~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vw  251 (458)
                      .+..+|..+|-.++|||   +|-+|++++.||.-.+-+-++|.-+.++.+ |.+.|.+...+.  ...++++.|-+-++|
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhcccchhhhh
Confidence            45678999999999986   899999999999999999999999999998 999999999864  567788899999999


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      |.-++..+ ..+ .|..-|..++|+.|.++|++|+.+..++|||++....+     ...+.+|.+.|+.+.|+.....+|
T Consensus        87 ~a~tgdel-hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-----p~E~~ghtg~Ir~v~wc~eD~~iL  159 (334)
T KOG0278|consen   87 DAVTGDEL-HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-----PKEISGHTGGIRTVLWCHEDKCIL  159 (334)
T ss_pred             hhhhhhhh-hhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-----chhhcCCCCcceeEEEeccCceEE
Confidence            99887752 333 57888999999999999999999999999999887653     567889999999999999666666


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      .+ .  .|++||+||.+++..++++...++|+++..+++|++|.++.|   +.|.+||..+...+..++ -...|.+..+
T Consensus       160 SS-a--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g---ssV~Fwdaksf~~lKs~k-~P~nV~SASL  232 (334)
T KOG0278|consen  160 SS-A--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG---SSVKFWDAKSFGLLKSYK-MPCNVESASL  232 (334)
T ss_pred             ee-c--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC---ceeEEeccccccceeecc-Cccccccccc
Confidence            55 4  899999999999999999999999999999999999998754   689999999999998876 3456899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCCCCCccccc
Q 012679          412 SPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNREPFAQL  454 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~~~~~~~~  454 (458)
                      +|+...++.|+.|+.++.||..++.++......++++-.+.+|
T Consensus       233 ~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF  275 (334)
T KOG0278|consen  233 HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF  275 (334)
T ss_pred             cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence            9999999999999999999999999888755555555444444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.6e-25  Score=195.54  Aligned_cols=243  Identities=16%  Similarity=0.259  Sum_probs=200.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      .+.|++|.|+|.+..|++++.||.+++||+........+.  |..++.+++| +...+++|+.||.|+.+|+.++..  .
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~--~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE--D   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCceEEEeccCceEEEEEecCCcc--e
Confidence            5789999999999999999999999999999987777777  9999999999 568999999999999999998874  5


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC  341 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~  341 (458)
                      .+..|...|.|+.+++....+++||.|++|++||.+....      ...+. ....|.++....  ..| ++|+  .|..
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~------~~~~d-~~kkVy~~~v~g--~~L-vVg~--~~r~  156 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV------VGTFD-QGKKVYCMDVSG--NRL-VVGT--SDRK  156 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc------ccccc-cCceEEEEeccC--CEE-EEee--cCce
Confidence            7778999999999999889999999999999999987443      33332 234788887653  344 4443  8999


Q ss_pred             EEEEECCCCCeeEEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----eeeEEEeCCC---------Cc
Q 012679          342 IKFWNTHTGACLNSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----VKMAELSGHT---------SR  405 (458)
Q Consensus       342 i~lwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----~~~~~~~~h~---------~~  405 (458)
                      +.+||+++.......   ....++.++++.|++.-.++  +.-+|.|.+=.+...    .+...|+.|.         .+
T Consensus       157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             EEEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            999999987755433   33567999999998877777  447999988766654    4555677774         46


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679          406 VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA  443 (458)
Q Consensus       406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~  443 (458)
                      |++|+|+|-..+|+||+.||.|.+||+++.+.+.....
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence            99999999999999999999999999999887766553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=4.3e-24  Score=201.60  Aligned_cols=270  Identities=13%  Similarity=0.134  Sum_probs=202.3

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      +++.+.|+.|++||..+++.  +..+..+. .+.+++|+|+|+.+ ++++.++.|++||..+++.+..+.. +. .+..+
T Consensus         4 ~~s~~~d~~v~~~d~~t~~~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~-~~~~~   78 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATLEV--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-GP-DPELF   78 (300)
T ss_pred             EEEecCCCEEEEEECCCCce--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-CC-CccEE
Confidence            56777899999999998876  44555443 46789999999977 5667889999999999988877764 32 24566


Q ss_pred             EeC--CCeEEE-EeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-cEEEEeCCCCCCCCcceee
Q 012679          233 AWN--NHILTT-GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN-LLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       233 ~~~--~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~  308 (458)
                      +|+  ++.+++ ++.++.|.+||+++... +..+.. ...+.+++|+|+++++++++.++ .+.+||..+...      .
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~------~  150 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI------V  150 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE------E
Confidence            774  565654 45689999999987553 444432 33468899999999999988775 567789876543      2


Q ss_pred             eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--------CCeEEEEEcCCCCeEEEEecC
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--------SQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      .... ....+.+++|+|++..+++++.  .++.|++||+.+++.+..+...        .....+.|+|+++.++++.+ 
T Consensus       151 ~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-  226 (300)
T TIGR03866       151 DNVL-VDQRPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-  226 (300)
T ss_pred             EEEE-cCCCccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-
Confidence            2221 2234578999999887777654  7899999999999887766422        12457889999999776544 


Q ss_pred             CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCCccccc
Q 012679          381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA-AADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      .++.+.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+.+.+.+.
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            46789999999888776553 44578999999999999876 46899999999988765544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.3e-25  Score=220.63  Aligned_cols=238  Identities=24%  Similarity=0.434  Sum_probs=204.3

Q ss_pred             cceeecc--CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          144 LNLLDWG--SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       144 ~~~~~~~--~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      +-.+.+.  .+.+++++.|.++++||..+|++  ...+.+|.+.|.++...  +.++++|+.|.+|++|++.++..+..+
T Consensus       252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C--~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~  327 (537)
T KOG0274|consen  252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC--THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL  327 (537)
T ss_pred             ceeEEEecCCCEEEEEecCCcEEeEecCCCcE--EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe
Confidence            4445555  56788999999999999999998  77788999999999875  457888999999999999999999999


Q ss_pred             cCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-C
Q 012679          222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-S  300 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~  300 (458)
                      .+ |...|.++..++.++++|+.||.|.+||+.+.+ ++..+.+|...|.++.+... ..+++|+.|++|++||+++. +
T Consensus       328 ~~-h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~  404 (537)
T KOG0274|consen  328 RG-HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK  404 (537)
T ss_pred             cc-ccccEEEEEecCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence            98 999999999999999999999999999999665 58999999999999988655 89999999999999999998 5


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEEEe
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSH  378 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~  378 (458)
                      +      ++.+.+|.+-|..+.+.   ..++++++  .|++|++||..+++++..+...  ..+..+++.  ...+++  
T Consensus       405 c------~~tl~~h~~~v~~l~~~---~~~Lvs~~--aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~--  469 (537)
T KOG0274|consen  405 C------IHTLQGHTSLVSSLLLR---DNFLVSSS--ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC--  469 (537)
T ss_pred             h------hhhhcCCcccccccccc---cceeEecc--ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE--
Confidence            5      88999999999777764   35666666  9999999999999999999874  567777766  345555  


Q ss_pred             cCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          379 GFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       379 g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                      ...++.+.+||+++++.+..+-.+.
T Consensus       470 s~~~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  470 SSDDGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             EecCCeeEEEecccCchhhhhhhcc
Confidence            3489999999999999888774444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2.4e-25  Score=213.05  Aligned_cols=261  Identities=19%  Similarity=0.321  Sum_probs=217.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEE-EEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTS-VNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~-v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      .-+++++.||++++|+-..++......+.+|.+-|.+ +++-+ ++-.|++|+.|+.|.+|...+...+..+.+ |...|
T Consensus        26 ~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snV  104 (745)
T KOG0301|consen   26 VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNV  104 (745)
T ss_pred             eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc-cccce
Confidence            3478888899999999888777666778888888877 88876 555799999999999999999999999998 99999


Q ss_pred             EEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          230 GSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       230 ~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      .|++-. ...+++|+.|.++++|-...   +...+.+|+..|.+++.-|++ .+++|+.|.+|++|.-  +..      +
T Consensus       105 C~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~------l  172 (745)
T KOG0301|consen  105 CSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL------L  172 (745)
T ss_pred             eeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch------h
Confidence            999973 45589999999999998743   355689999999999999988 8999999999999985  333      7


Q ss_pred             eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTL  387 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i  387 (458)
                      .++.+|...|+.+++-++ .. +++++  .||.|++|++ +|+++..+ .+.+-+.++....++..++++ | +|++++|
T Consensus       173 ~tf~gHtD~VRgL~vl~~-~~-flScs--NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~-g-EDrtlri  245 (745)
T KOG0301|consen  173 KTFSGHTDCVRGLAVLDD-SH-FLSCS--NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST-G-EDRTLRI  245 (745)
T ss_pred             hhhccchhheeeeEEecC-CC-eEeec--CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe-c-CCceEEE
Confidence            889999999999999984 33 44455  8999999999 66666655 455679999988888888775 3 8999999


Q ss_pred             EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      |+..  ++.+.+.-.+..|+++.+-++|. |++|+.||.||||.....
T Consensus       246 W~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  246 WKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             eecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence            9987  66666664556899999998887 667999999999998743

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.4e-26  Score=205.98  Aligned_cols=272  Identities=19%  Similarity=0.236  Sum_probs=213.1

Q ss_pred             cceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          144 LNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +.+++-++   ..+++|+.||.|+|||+....+  +.++..|.+.|..|++..  ..+++++.|.+|+.|.+.. ..+++
T Consensus        69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~t  143 (433)
T KOG0268|consen   69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHT  143 (433)
T ss_pred             cchhhcCcchhhhhhccccCceEEEEehhhhhh--hheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cccee
Confidence            44455555   4588999999999999998776  788899999999999987  5688888999999999776 36666


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~  297 (458)
                      +.  ....+..+.-  .+..+++++.  .|.|||.+... ++..+.-....|.++.|+|-. ..|++|+.|+.|.+||++
T Consensus       144 il--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R  218 (433)
T KOG0268|consen  144 IL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR  218 (433)
T ss_pred             ee--ccccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence            65  3444555554  3577888775  58999997554 467777677889999999954 567788899999999999


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEE-eCCCCeEEEEEcCCCCeEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSV-DTGSQVCALLWNKNERELL  375 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~-~~~~~v~~~~~s~~~~~l~  375 (458)
                      ....      ++++. ..-.-..|+|+| ....++++.  .|..++.+|++... ++... ++.+.|..+.|+|.|++++
T Consensus       219 ~~~P------l~KVi-~~mRTN~IswnP-eafnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv  288 (433)
T KOG0268|consen  219 QASP------LKKVI-LTMRTNTICWNP-EAFNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV  288 (433)
T ss_pred             cCCc------cceee-eeccccceecCc-cccceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence            8876      33332 233456899999 677777766  99999999998754 44443 4567899999999999999


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCC---CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHT---SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~---~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      +  |+-|.+|+||.+..+..-..+  |+   ..|.|+.||-|.+++++||.|+.|++|.-...++..
T Consensus       289 s--gsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  289 S--GSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             c--ccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            9  668999999999876543332  33   569999999999999999999999999987655543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.1e-25  Score=194.16  Aligned_cols=243  Identities=16%  Similarity=0.255  Sum_probs=193.2

Q ss_pred             CCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679          182 ENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       182 h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      ..+.|.+++||| ...+++.|+.||+|++|+++. +..+.+-...|.++|.+++|  +|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            467899999999 566777999999999999987 45444444449999999999  58999999999999999999886


Q ss_pred             eeEEEEcccccceEeEEEcCCCC--EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          258 HIVETYRGHNQEVCGLKWSASGQ--QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~spd~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                        +..+..|..+|..+.|-+...  .|++|+.|.+|+.||.+....      +.++. -...+.++..-   ..+++++.
T Consensus       106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p------v~t~~-LPeRvYa~Dv~---~pm~vVat  173 (347)
T KOG0647|consen  106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP------VATLQ-LPERVYAADVL---YPMAVVAT  173 (347)
T ss_pred             --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe------eeeee-ccceeeehhcc---CceeEEEe
Confidence              567888999999999988665  899999999999999997765      55543 34566666543   23555544


Q ss_pred             CCCCCeEEEEECCCCCeeEE-E--eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--eeeEEEeCCC-------
Q 012679          336 GGGDRCIKFWNTHTGACLNS-V--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM--VKMAELSGHT-------  403 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~-~--~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~--~~~~~~~~h~-------  403 (458)
                        .++.|.+|+++++..... +  ...-++.+++..++....+.  |.-+|.+.|..+..+  +.-.+++.|.       
T Consensus       174 --a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  174 --AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             --cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence              799999999987653322 2  23567899998888877776  668999999988776  4455667775       


Q ss_pred             --CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          404 --SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       404 --~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                        ..|++|+|+|.-..|+|+|.||++.+||-....+++.
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence              2488899999999999999999999999876666554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.3e-24  Score=177.31  Aligned_cols=280  Identities=20%  Similarity=0.336  Sum_probs=217.3

Q ss_pred             CccccceeeccC-CCeEEEEcC-CEEEEEECC------CC----C---eeeEEEecCCCCCEEEEEEcCCCCEEEEEecC
Q 012679          140 DDYYLNLLDWGS-SNVLAIALG-STVYLWDAS------DG----T---TSELVTVDDENGPVTSVNWAPDGRHIAIGLNN  204 (458)
Q Consensus       140 ~d~~~~~~~~~~-~~~la~~~d-~~v~iwd~~------~~----~---~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d  204 (458)
                      +...+..++|++ +.+.+++.+ .+++|.-..      .+    +   ......-+.|.+.|+|.+|+|+|++||+|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            334678899998 567777665 456655322      11    1   11123345789999999999999999999999


Q ss_pred             CeEEEEeCCCcee-----eEEecCCCcccEEEEEe-C-----CCeEEEEe-CCCcEEEEEccCCCeeEEEEcccccceEe
Q 012679          205 CQVQLWDSTANRQ-----LRTLRGGHRSRVGSLAW-N-----NHILTTGG-MDGLIINNDVRVRDHIVETYRGHNQEVCG  272 (458)
Q Consensus       205 g~v~iwd~~~~~~-----~~~~~~~~~~~v~~l~~-~-----~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  272 (458)
                      .+|++.-++...+     -..+.. |.+.|..++| +     +.+|++++ .|..|++-|...++. ...+.+|++.|.+
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghila  188 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILA  188 (350)
T ss_pred             ceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEE
Confidence            9999976543322     224555 9999999999 1     35677665 477888888877764 6788999999987


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec----c---cccceeEEEecCCCCcEEEEeCCCCCCeEEEE
Q 012679          273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE----E---HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW  345 (458)
Q Consensus       273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~---h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw  345 (458)
                      + ++-++-.+++|+.|.+|++||++....      +..+.    +   ...+|.+++..|. ..++++|.  .|....+|
T Consensus       189 l-yswn~~m~~sgsqdktirfwdlrv~~~------v~~l~~~~~~~glessavaav~vdps-grll~sg~--~dssc~ly  258 (350)
T KOG0641|consen  189 L-YSWNGAMFASGSQDKTIRFWDLRVNSC------VNTLDNDFHDGGLESSAVAAVAVDPS-GRLLASGH--ADSSCMLY  258 (350)
T ss_pred             E-EEecCcEEEccCCCceEEEEeeeccce------eeeccCcccCCCcccceeEEEEECCC-cceeeecc--CCCceEEE
Confidence            6 456799999999999999999998766      33332    1   2367999999994 67888876  99999999


Q ss_pred             ECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----eeeEEEeCCCCcEEEEEEcCCCCEEEE
Q 012679          346 NTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----VKMAELSGHTSRVLFMAQSPDGCTVAS  420 (458)
Q Consensus       346 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s  420 (458)
                      |++.+.+++.+. +...|.++.|+|...++++  +.-|..|++-|+...    -.+.....|...+..+.|+|..-.+++
T Consensus       259 dirg~r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis  336 (350)
T KOG0641|consen  259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS  336 (350)
T ss_pred             EeeCCceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence            999999999885 4578999999999999999  558999999998632    234455679999999999999988999


Q ss_pred             EeCCCcEEEEecC
Q 012679          421 AAADETLRFWNVF  433 (458)
Q Consensus       421 ~s~Dg~i~iW~~~  433 (458)
                      .+.|.++.+|-+.
T Consensus       337 ssadkt~tlwa~~  349 (350)
T KOG0641|consen  337 SSADKTATLWALN  349 (350)
T ss_pred             ccCcceEEEeccC
Confidence            9999999999764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=9.7e-26  Score=206.41  Aligned_cols=242  Identities=22%  Similarity=0.394  Sum_probs=192.4

Q ss_pred             ccccceeeccC---CCeEEEEcCCEEEEEECCCC--------CeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEE
Q 012679          141 DYYLNLLDWGS---SNVLAIALGSTVYLWDASDG--------TTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQ  208 (458)
Q Consensus       141 d~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~--------~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~  208 (458)
                      +..+|....-|   .-+++.+.++.|+|||..+.        +..+-..+.+|...=++++|++. .-+|++|+.|+.|.
T Consensus       124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~  203 (422)
T KOG0264|consen  124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC  203 (422)
T ss_pred             CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence            33444444433   23444566789999997642        33334578899887889999984 44789999999999


Q ss_pred             EEeCCCcee-------eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccC-CCeeEEEEcccccceEeEEEcC
Q 012679          209 LWDSTANRQ-------LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV-RDHIVETYRGHNQEVCGLKWSA  277 (458)
Q Consensus       209 iwd~~~~~~-------~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~l~~sp  277 (458)
                      +||+.....       ...+. +|...|..++|+   ..++++++.|+.+.|||+|+ .........+|.++|.|++|+|
T Consensus       204 lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp  282 (422)
T KOG0264|consen  204 LWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP  282 (422)
T ss_pred             EEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence            999975433       23344 499999999994   68999999999999999996 3344567789999999999999


Q ss_pred             -CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--
Q 012679          278 -SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--  354 (458)
Q Consensus       278 -d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--  354 (458)
                       ++..||+|+.|++|.+||+++...     +++.+.+|...|.++.|+|....+||+++  .|+.+.+||+..-...+  
T Consensus       283 ~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~  355 (422)
T KOG0264|consen  283 FNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSP  355 (422)
T ss_pred             CCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccCh
Confidence             677889999999999999998765     38999999999999999999999999987  99999999987532211  


Q ss_pred             ----------EEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          355 ----------SVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       355 ----------~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                                .+.   +...|+.+.|+|+...++++. .+|+.+.||+..
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-aeDN~LqIW~~s  404 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV-AEDNILQIWQMA  404 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEe-cCCceEEEeecc
Confidence                      122   235699999999999988875 489999999975

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.5e-25  Score=189.59  Aligned_cols=236  Identities=24%  Similarity=0.410  Sum_probs=191.6

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCe-eeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCceee--EEe
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTT-SELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQL--RTL  221 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~--~~~  221 (458)
                      +++.+.++++++.|++|+|+.+..+.. ..+.++.+|.++|..++|..  .|.+||+++.||.|.||.-++++-.  ...
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~   98 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH   98 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence            456678999999999999999886554 67889999999999999976  8999999999999999998877532  233


Q ss_pred             cCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCC---C-----------CE
Q 012679          222 RGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSAS---G-----------QQ  281 (458)
Q Consensus       222 ~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd---~-----------~~  281 (458)
                      .. |...|++++|-    |-.|++++.||.|.|.+.+...  ...+....|.-.|++++|.|.   |           +.
T Consensus        99 ~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr  177 (299)
T KOG1332|consen   99 AA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR  177 (299)
T ss_pred             hh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence            34 99999999993    5789999999999999988762  223455689999999999995   4           56


Q ss_pred             EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC---CcEEEEeCCCCCCeEEEEECCCCC--eeEEE
Q 012679          282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ---SNLLATGGGGGDRCIKFWNTHTGA--CLNSV  356 (458)
Q Consensus       282 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~  356 (458)
                      |++|+.|+.|+||+.....-    ....++.+|...|+.++|+|.-   ...+|+++  .||++.||-.....  -..++
T Consensus       178 lvSgGcDn~VkiW~~~~~~w----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tl  251 (299)
T KOG1332|consen  178 LVSGGCDNLVKIWKFDSDSW----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTL  251 (299)
T ss_pred             eeccCCccceeeeecCCcch----hhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccc
Confidence            99999999999999988633    1235588999999999999964   35678877  99999999876321  11122


Q ss_pred             --eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          357 --DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       357 --~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                        +....+..+.|+..|+.|+++.  .|+.+.+|.-.
T Consensus       252 l~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~  286 (299)
T KOG1332|consen  252 LEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN  286 (299)
T ss_pred             cccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence              2355699999999999999954  68999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=2.8e-25  Score=205.06  Aligned_cols=275  Identities=20%  Similarity=0.313  Sum_probs=219.5

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCC-CeeeEEEec--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDG-TTSELVTVD--DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~-~~~~~~~~~--~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      .+..+..+. .+-+..+..|.|+|||+... ...++..+.  .....|.++...|||+.|++|+.-.+|.|||+......
T Consensus       421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr  500 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR  500 (705)
T ss_pred             EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence            344445544 66777777899999998743 222222222  34678999999999999999999999999999876543


Q ss_pred             E--EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679          219 R--TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW  294 (458)
Q Consensus       219 ~--~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw  294 (458)
                      .  .+.. ....+.+|+.  +.++.++++.||.|.|||+... .+++.+++|...+.||.+++||..|.+|+-|++|+.|
T Consensus       501 ikaelts-sapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW  578 (705)
T KOG0639|consen  501 IKAELTS-SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW  578 (705)
T ss_pred             hhhhcCC-cchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence            2  2322 2233444444  5689999999999999999854 4689999999999999999999999999999999999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  374 (458)
                      |++.+..      ++. ......|.++..||.+.++++ |-  .++.+.+......+..+...+.+-|.++.|.+.|+.+
T Consensus       579 Dlregrq------lqq-hdF~SQIfSLg~cP~~dWlav-GM--ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  579 DLREGRQ------LQQ-HDFSSQIFSLGYCPTGDWLAV-GM--ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             hhhhhhh------hhh-hhhhhhheecccCCCccceee-ec--ccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence            9998765      222 134678999999997666655 43  8888988888777766666778889999999999999


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      +++.  .|+.+..|..+-+..+...+ ..+.|+++.+|.|.++||||+.|....||.+
T Consensus       649 vStG--kDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTG--KDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecC--chhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9963  89999999999999988776 4678999999999999999999999999876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.3e-25  Score=201.09  Aligned_cols=274  Identities=20%  Similarity=0.307  Sum_probs=223.2

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeee-EE--------------Ee-cCCCCCEEEEEEcCCCCEEEEEecC
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSE-LV--------------TV-DDENGPVTSVNWAPDGRHIAIGLNN  204 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~-~~--------------~~-~~h~~~V~~v~~s~~g~~la~g~~d  204 (458)
                      .+.++..++  ...+.++.+++|.=|++.+|+... +.              .- ..|...+.+++.++||+|||+|+.|
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d  223 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD  223 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence            455666666  589999999999999998876320 00              01 2788899999999999999999999


Q ss_pred             CeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679          205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL  282 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  282 (458)
                      ..|.||+..+.+.++.+.+ |.+.|.+++|  ..+.|++++.|+.|++|++..... +.++.+|...|.+|....-++.+
T Consensus       224 ~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~reR~v  301 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSRERCV  301 (479)
T ss_pred             ceEEEecCcccchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcccceE
Confidence            9999999999999999987 9999999999  468999999999999999986553 78888999999999998888888


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---  359 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---  359 (458)
                      -+|+.|+++++|++....       ...+.+|.+.+-|++|-.+  .-+++|+  .+|.|.+|++.+.+++.+....   
T Consensus       302 tVGgrDrT~rlwKi~ees-------qlifrg~~~sidcv~~In~--~HfvsGS--dnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  302 TVGGRDRTVRLWKIPEES-------QLIFRGGEGSIDCVAFIND--EHFVSGS--DNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             EeccccceeEEEeccccc-------eeeeeCCCCCeeeEEEecc--cceeecc--CCceEEEeeecccCceeEeeccccc
Confidence            888899999999994433       3556788899999999873  5566765  9999999999999988776421   


Q ss_pred             ----------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----eeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-C
Q 012679          360 ----------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----VKMAELSGHTSRVLFMAQSPDGCTVASAAA-D  424 (458)
Q Consensus       360 ----------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-D  424 (458)
                                .-|++++..|....+++  |..+|.|++|.+..+    .++..+. -.+-|++++|+++|..|++|.. .
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence                      14788999999998888  778999999998776    4455554 5678999999999997766643 3


Q ss_pred             CcEEEEec
Q 012679          425 ETLRFWNV  432 (458)
Q Consensus       425 g~i~iW~~  432 (458)
                      -.+-=|-+
T Consensus       448 hRlGRW~~  455 (479)
T KOG0299|consen  448 HRLGRWWC  455 (479)
T ss_pred             cccceeeE
Confidence            34444544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=8.4e-24  Score=184.87  Aligned_cols=262  Identities=15%  Similarity=0.210  Sum_probs=205.8

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      ++..+.+++  +.+++.+.||++++|++.....  ...+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++.....
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceee
Confidence            455666664  7799999999999999988754  2333 47889999999974 5689999999999999999886554


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      -.  |...|.|+...  ...+++|+.|++|++||.+.... ...+. ....|.++..  .|+.|++|+.|..|.+||+++
T Consensus        91 gt--h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   91 GT--HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-VGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             cc--CCCceEEEEeeccCCeEEEcccCccEEEEecccccc-ccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence            44  99999999996  68999999999999999986332 33332 2347877765  578899999999999999998


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC----CeeEEEeC----------CCCeEE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG----ACLNSVDT----------GSQVCA  364 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~----~~~~~~~~----------~~~v~~  364 (458)
                      .....    ...-..-...++++++-|.+...+++ +  .||.|.+=.+...    +....+++          ..+|++
T Consensus       165 ~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~s-S--ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa  237 (323)
T KOG1036|consen  165 LDEPF----QRRESSLKYQTRCVALVPNGEGYVVS-S--IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA  237 (323)
T ss_pred             ccchh----hhccccceeEEEEEEEecCCCceEEE-e--ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence            76532    11122345678999999966655554 3  8999888766655    22222322          236899


Q ss_pred             EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      ++|+|-...+++  |+.||.|.+||..+.+.+.++......|..++|+.||..||+++.
T Consensus       238 i~Fhp~~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  238 IAFHPIHGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEeccccceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999988  779999999999999999999888888999999999999999874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=213.96  Aligned_cols=271  Identities=19%  Similarity=0.351  Sum_probs=227.9

Q ss_pred             CeEEEEcCCEEEEEECCCCCe----eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--eeeEEecCCCc
Q 012679          153 NVLAIALGSTVYLWDASDGTT----SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQLRTLRGGHR  226 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~----~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~~~~~~~~~~  226 (458)
                      .++++|.||.|++|+......    ..+..++.|.+.|..+....+|+.|++++.|-+|++|+...+  -+..++.. |.
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-H~  117 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-HK  117 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc-cc
Confidence            499999999999999865332    135678899999999999999999999999999999999877  56677776 99


Q ss_pred             ccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCe---------eEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          227 SRVGSLAW---NNHILTTGGMDGLIINNDVRVRDH---------IVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       227 ~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~---------~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      ..|.|++.   +..++++|+-|+.|.+||+.++..         ....+. ++...|.+++.++.|..|++|+..+.+++
T Consensus       118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~  197 (735)
T KOG0308|consen  118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL  197 (735)
T ss_pred             chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence            99999999   678999999999999999997632         122333 78899999999999999999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCC
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNER  372 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~  372 (458)
                      ||.++...      +..+.+|...|+++..+++|..++.++   .||+|++||+...+|+.++.. ...|.++..+|+-.
T Consensus       198 wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~  268 (735)
T KOG0308|consen  198 WDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT  268 (735)
T ss_pred             eccccccc------eeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence            99999887      888999999999999999887777643   799999999999999998864 45599999999999


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .+++  |+.|+.|..=|+.+......+-....+|..+..+...+-+-+++.|+.|+-|.....
T Consensus       269 ~vYs--G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  269 HVYS--GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             eEEe--cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence            9998  889999999999885444444445667888888765555567888999999987543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.2e-23  Score=174.43  Aligned_cols=247  Identities=21%  Similarity=0.358  Sum_probs=201.5

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC------CCce--------eeEEecCCCcccEEEEEeC--CCeE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS------TANR--------QLRTLRGGHRSRVGSLAWN--NHIL  239 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~------~~~~--------~~~~~~~~~~~~v~~l~~~--~~~l  239 (458)
                      +..++ ....|.+++|+|.|.+.|+|+...+++|-..      ..+.        .+..-...|.+.|.|.+|+  |.+|
T Consensus        26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geli  104 (350)
T KOG0641|consen   26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELI  104 (350)
T ss_pred             EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeE
Confidence            33443 4678999999999999999999999888632      2211        1122223488999999995  7999


Q ss_pred             EEEeCCCcEEEEEccCCCe----eEEEEcccccceEeEEEcC----CCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeee
Q 012679          240 TTGGMDGLIINNDVRVRDH----IVETYRGHNQEVCGLKWSA----SGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       240 ~sg~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~l~~sp----d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      ++|+.|.+|++.-+.....    .-..+.-|.+.|..++|-.    .+.+|++++. |..|++-|...++.      .+.
T Consensus       105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~------~~a  178 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG------FHA  178 (350)
T ss_pred             EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc------cee
Confidence            9999999999987654432    1234667899999999965    3567777764 67788888877776      888


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCCeEEEEEcCCCCeEEEEecCCC
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQVCALLWNKNERELLSSHGFTQ  382 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~g~~d  382 (458)
                      +.+|.+-|.++-  .+...++++|+  .|.+|++||++-..++.++..        .+.|.+++..|.|+.|++  |..|
T Consensus       179 ~sghtghilaly--swn~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s--g~~d  252 (350)
T KOG0641|consen  179 LSGHTGHILALY--SWNGAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS--GHAD  252 (350)
T ss_pred             ecCCcccEEEEE--EecCcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee--ccCC
Confidence            999999987663  34568898876  999999999999999998853        146999999999999998  7789


Q ss_pred             CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       383 ~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ....+||++.++.++.+..|+..|.++.|||...++++++.|..|++=|+.+.
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.7e-24  Score=198.32  Aligned_cols=250  Identities=21%  Similarity=0.350  Sum_probs=209.4

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe----------------c-CCCcccEEEEEe--CC
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL----------------R-GGHRSRVGSLAW--NN  236 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~----------------~-~~~~~~v~~l~~--~~  236 (458)
                      ...+..|.-+|++|+++|++++.++++.+|+|.=|++.+++..+.+                . ..|...+.+++.  ++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            3455678889999999999999999999999999999888743110                1 147788888888  68


Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS  316 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  316 (458)
                      .+|++|+.|..|.||+.++.++ +..+.+|.+.|.+++|-.....|++++.|+.|++|++.....      +.++.+|+.
T Consensus       215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~------vetlyGHqd  287 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY------VETLYGHQD  287 (479)
T ss_pred             cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH------HHHHhCCcc
Confidence            9999999999999999999887 677999999999999999889999999999999999988766      778889999


Q ss_pred             ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679          317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM  396 (458)
Q Consensus       317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~  396 (458)
                      .|.+|.... -..++.+|+  .|+++++|++.....+....+.+.+-+++|-.+..+ ++  |.++|.|.+|++...+++
T Consensus       288 ~v~~IdaL~-reR~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hf-vs--GSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  288 GVLGIDALS-RERCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHF-VS--GSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             ceeeechhc-ccceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecccce-ee--ccCCceEEEeeecccCce
Confidence            999998776 356666666  999999999966555555556668888888766554 44  779999999999998888


Q ss_pred             EEEe-CC-----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          397 AELS-GH-----------TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       397 ~~~~-~h-----------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      .+.. +|           ...|++++..|...++++|+.+|.|++|.+..+-..
T Consensus       362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~  415 (479)
T KOG0299|consen  362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA  415 (479)
T ss_pred             eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence            7653 23           127999999999999999999999999999887443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-24  Score=207.89  Aligned_cols=237  Identities=21%  Similarity=0.415  Sum_probs=200.3

Q ss_pred             ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679          141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ..++.++.|++  ..|+++..+|.|.|||..+.+.  +..+.+ |...|-+++|.  +..+.+|+.+|.|..+|+...+.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence            56788888875  5677777899999999987765  666677 99999999998  67899999999999999998876


Q ss_pred             eEE-ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEE--CCCcE
Q 012679          218 LRT-LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGG--NDNLL  291 (458)
Q Consensus       218 ~~~-~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~--~dg~i  291 (458)
                      ... +.+ |...|..+.|  ++.++++|+.|+.+.|||..... +...+..|...|..++|+| ...+||+|+  .|+.|
T Consensus       293 ~~~~~~~-H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  293 VVSTLQG-HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI  370 (484)
T ss_pred             hhhhhhc-ccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence            665 554 9999999999  58999999999999999996544 4678889999999999999 677889876  59999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKN  370 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~  370 (458)
                      ++||..++..      +..+ .-...|..|.|++..+.++++. |..++.|.||+..+.+.+..+.. ...|..++++|+
T Consensus       371 ~fwn~~~g~~------i~~v-dtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  371 KFWNTNTGAR------IDSV-DTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             EEEEcCCCcE------eccc-ccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence            9999998765      4444 3468899999999766666655 67888999999999888877754 567999999999


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCc
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      |..+++  |..|.++++|++-..
T Consensus       443 g~~i~t--~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  443 GETIVT--GAADETLRFWNLFDE  463 (484)
T ss_pred             CCEEEE--ecccCcEEeccccCC
Confidence            999999  457999999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.7e-25  Score=210.26  Aligned_cols=242  Identities=19%  Similarity=0.323  Sum_probs=204.3

Q ss_pred             EEEEc-CCCCEEEEEecCCeEEEEeCCCce------eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC-
Q 012679          188 SVNWA-PDGRHIAIGLNNCQVQLWDSTANR------QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD-  257 (458)
Q Consensus       188 ~v~~s-~~g~~la~g~~dg~v~iwd~~~~~------~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-  257 (458)
                      .+..+ |.++||.+|+.||.|++|++....      .+..+.. |...|..+..  +++.|++++.|.+|++|+..... 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence            34444 467889999999999999986433      3566666 9999998877  57899999999999999998775 


Q ss_pred             eeEEEEcccccceEeEEE-cCCCCEEEEEECCCcEEEEeCCCCCCC----Ccceeeeeec-ccccceeEEEecCCCCcEE
Q 012679          258 HIVETYRGHNQEVCGLKW-SASGQQLASGGNDNLLHIWDRSMASSN----SVTQWLHRLE-EHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~-spd~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll  331 (458)
                      .+..++..|...|.|+++ -++..++|+||-|+.|.+||++.+...    ........+. ++...|.+++..+.+ .++
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~i  186 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TII  186 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEE
Confidence            456788899999999999 788899999999999999999977330    0011122333 788899999999854 777


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA  410 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~  410 (458)
                      ++|+  ..+.|++||.++++.+..+.. ...|..+..+++|..+++  +.+||+|++||+...+++.++..|...|+++.
T Consensus       187 vsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls--~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  187 VSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS--ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             EecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEee--cCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence            7766  899999999999988877764 467999999999999999  55999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          411 QSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       411 ~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .+|+-..+.+|+.||.|..=|+.+.
T Consensus       263 ~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  263 SSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eCCCcceEEecCCCCcEEecccCCc
Confidence            9999999999999999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5e-24  Score=210.05  Aligned_cols=241  Identities=19%  Similarity=0.314  Sum_probs=206.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-eeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCee
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI  259 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~  259 (458)
                      .|....+.|+|.|+|++|++++.||.|++|+.... +.-..+.. +...|.+++...+.|++|+.+++|.+|.+..+.. 
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~-   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE-   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc-
Confidence            57888999999999999999999999999997766 44445554 7889999999999999999999999999987653 


Q ss_pred             EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      -..+...+-++.+++++-+|+++|.||.|-.|++-+......      ...+.+|.++|.++.|+|. ..+||+.+  -|
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------~~~lrgh~apVl~l~~~p~-~~fLAvss--~d  159 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------EKVLRGHDAPVLQLSYDPK-GNFLAVSS--CD  159 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch------heeecccCCceeeeeEcCC-CCEEEEEe--cC
Confidence            234444577899999999999999999999999999988877      7889999999999999996 45555555  79


Q ss_pred             CeEEEEECCCCCeeEEEeC---------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEE
Q 012679          340 RCIKFWNTHTGACLNSVDT---------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLF  408 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~  408 (458)
                      |.|++||+.++.+..++..         ...++.++|+|++..+++..  .++.|.+|+..+++....+..  +...+.+
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~--~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP--VDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec--cCCeEEEEccCCceeheeecccccccceEE
Confidence            9999999999988776642         23467899999988887754  799999999999998888754  3455999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          409 MAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       409 l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ++|+|+|+|||+++.||.|.|||+.+
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEeccc
Confidence            99999999999999999999999985

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=2.1e-24  Score=204.80  Aligned_cols=283  Identities=21%  Similarity=0.302  Sum_probs=213.6

Q ss_pred             CCeEEEE-cCCEEEEEECCCCCee----eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE--ecCC
Q 012679          152 SNVLAIA-LGSTVYLWDASDGTTS----ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT--LRGG  224 (458)
Q Consensus       152 ~~~la~~-~d~~v~iwd~~~~~~~----~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~--~~~~  224 (458)
                      ..+++++ .+|.|.++|.......    ++.....|...|..++|.|....|++++.|.++++||+++.+++..  +.+ 
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-  142 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-  142 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc-
Confidence            4566655 5799999998754432    2455668999999999999777889999999999999999988776  555 


Q ss_pred             CcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCe-------------------e-------EEEEcccccceEe---
Q 012679          225 HRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDH-------------------I-------VETYRGHNQEVCG---  272 (458)
Q Consensus       225 ~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~-------------------~-------~~~~~~h~~~v~~---  272 (458)
                      |...|.+++|   +...|++|++||.|.|||++....                   .       +.....+...|.+   
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT  222 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT  222 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence            9999999999   578999999999999999985430                   0       1111234444444   


Q ss_pred             EEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeee--eccc---ccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679          273 LKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHR--LEEH---TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       273 l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~--~~~h---~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      +.+..|...||++|. |+.|+|||++........++...  +..|   ...+.++.....|.+++|+|   .|+.|++||
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~yn  299 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYN  299 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEe
Confidence            555678999999988 99999999998766443333222  2233   34577888888889999998   699999999


Q ss_pred             CCCCC--eeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCC-CCEEE
Q 012679          347 THTGA--CLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPD-GCTVA  419 (458)
Q Consensus       347 ~~~~~--~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spd-g~~l~  419 (458)
                      +.+..  ++..+.+   ...-..-..+|++.++++  |..|...++|.+.+.+ ....+.||+-.|++++|.|. -.-++
T Consensus       300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~  377 (720)
T KOG0321|consen  300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA  377 (720)
T ss_pred             ccccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence            98754  2333322   122334467899999999  7799999999998865 45667899999999999883 33577


Q ss_pred             EEeCCCcEEEEecCCCCcccc
Q 012679          420 SAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       420 s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      |++.|..+++|++.++-+...
T Consensus       378 TcSdD~~~kiW~l~~~l~e~~  398 (720)
T KOG0321|consen  378 TCSDDFRVKIWRLSNGLEEIY  398 (720)
T ss_pred             eeccCcceEEEeccCchhhcc
Confidence            889999999999977655443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.4e-22  Score=187.63  Aligned_cols=273  Identities=20%  Similarity=0.318  Sum_probs=215.0

Q ss_pred             cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEE-ecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVT-VDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~-~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      +....|+|  .+++.....+.++.|+.+.+.+.+... ++. ....|.|++|.++|. +++|.++|.|.||+..+.+..+
T Consensus       203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k  281 (626)
T KOG2106|consen  203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK  281 (626)
T ss_pred             EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe
Confidence            34456766  678888889999999999887643332 222 236799999999997 6799999999999999888888


Q ss_pred             EecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCC----------------------ee-----------------
Q 012679          220 TLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRD----------------------HI-----------------  259 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~----------------------~~-----------------  259 (458)
                      ... .|.+.|.+++. ....|++|+.|..|..||-.-..                      .+                 
T Consensus       282 ~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f  360 (626)
T KOG2106|consen  282 QVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF  360 (626)
T ss_pred             Eee-ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence            887 49999999998 34455569999999999832110                      00                 


Q ss_pred             EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      .....+|..+...++.+|+.+++++++.|+.+++|+  ..+.    .+..   .-..++.++.|+|.+  .+|.|.  ..
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~----~wt~---~~~d~~~~~~fhpsg--~va~Gt--~~  427 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL----EWTK---IIEDPAECADFHPSG--VVAVGT--AT  427 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce----eEEE---EecCceeEeeccCcc--eEEEee--cc
Confidence            112347888899999999999999999999999999  2222    1122   235678899999976  777765  89


Q ss_pred             CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEe-CCCCcEEEEEEcCCCCE
Q 012679          340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAELS-GHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~-~h~~~V~~l~~spdg~~  417 (458)
                      |...+.|.++...+.....+.+++.+.|+|+|.+++.  |..|+.|+||.+.. +.....+. .|..+|+.+.||+|+++
T Consensus       428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~  505 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF  505 (626)
T ss_pred             ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence            9999999999877777666899999999999999999  77999999999864 44443332 34488999999999999


Q ss_pred             EEEEeCCCcEEEEecC
Q 012679          418 VASAAADETLRFWNVF  433 (458)
Q Consensus       418 l~s~s~Dg~i~iW~~~  433 (458)
                      |.+-+.|-.|.+|.-.
T Consensus       506 ~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  506 LVSNSGDYEILYWKPS  521 (626)
T ss_pred             EEeccCceEEEEEccc
Confidence            9999999999999433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.2e-23  Score=182.49  Aligned_cols=281  Identities=20%  Similarity=0.293  Sum_probs=216.2

Q ss_pred             ccceeeccC---CCeEEEEcCCEEEEEECCCCCe--------eeEE-----EecCCCCCEEEEEEcC-CCCEEEEEecCC
Q 012679          143 YLNLLDWGS---SNVLAIALGSTVYLWDASDGTT--------SELV-----TVDDENGPVTSVNWAP-DGRHIAIGLNNC  205 (458)
Q Consensus       143 ~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~--------~~~~-----~~~~h~~~V~~v~~s~-~g~~la~g~~dg  205 (458)
                      .+|.++...   ..+++++.||.|.+||++...-        ..++     .-.+|.-.|.++.|-| |.-.+.+++-|.
T Consensus        45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh  124 (397)
T KOG4283|consen   45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH  124 (397)
T ss_pred             ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence            456665544   5689999999999999985431        1111     1236788899999999 777899999999


Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      +++|||..+.+....|.  ..+.|.+-+|+     ..++++|.++-.|++-|+..+.. ..++.+|.+.|.++.|+|...
T Consensus       125 tlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e  201 (397)
T KOG4283|consen  125 TLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSE  201 (397)
T ss_pred             eEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCce
Confidence            99999999999888887  67778777774     36788999999999999998775 789999999999999999766


Q ss_pred             E-EEEEECCCcEEEEeCCCCCCC---------CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          281 Q-LASGGNDNLLHIWDRSMASSN---------SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       281 ~-l~sg~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      + |++|+.||.|++||++....-         .....+..-..|.+.|..++|..++.+++..|   .|..+++|+..+|
T Consensus       202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G  278 (397)
T KOG4283|consen  202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESG  278 (397)
T ss_pred             eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccC
Confidence            5 689999999999999865220         01111223457889999999999888777665   7889999999988


Q ss_pred             CeeEE-E---eC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          351 ACLNS-V---DT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       351 ~~~~~-~---~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      +.... +   .+    +-.+. +. +.+...++.. - .++.+.++.+-++..+..+.+|-..|.|.++-|+=+...+|.
T Consensus       279 ~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~-p-~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~  354 (397)
T KOG4283|consen  279 RNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLF-P-NDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGD  354 (397)
T ss_pred             cccccccccccccccccceEE-Ee-ecccceEEEE-e-cCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccc
Confidence            63211 1   11    11111 22 3333333332 2 358999999999999999999988999999999999999999


Q ss_pred             CCCcEEEEecC
Q 012679          423 ADETLRFWNVF  433 (458)
Q Consensus       423 ~Dg~i~iW~~~  433 (458)
                      .|+.|..|-..
T Consensus       355 ~d~ni~~w~p~  365 (397)
T KOG4283|consen  355 MNGNIYMWSPA  365 (397)
T ss_pred             cCCcccccccc
Confidence            99999999873

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.8e-24  Score=185.54  Aligned_cols=247  Identities=19%  Similarity=0.300  Sum_probs=186.1

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce------------------------------------eeE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR------------------------------------QLR  219 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~------------------------------------~~~  219 (458)
                      +..+++|.+.|++++|+.||++||+++.|+.|+||++....                                    .+.
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            34578999999999999999999999999999999875321                                    011


Q ss_pred             Eec----------------------CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679          220 TLR----------------------GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKW  275 (458)
Q Consensus       220 ~~~----------------------~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  275 (458)
                      .+.                      ..|...+..+-.  ++.+|++++.|..|.+|+++ ++ .+..+......-...+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceee
Confidence            000                      012333333333  45789999999999999998 44 45666666666777889


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCCCC--CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---
Q 012679          276 SASGQQLASGGNDNLLHIWDRSMASSN--SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---  350 (458)
Q Consensus       276 spd~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---  350 (458)
                      ||+|+++|+++..-.|++|.+--.+..  .....+..+++|.++|.+++|+++... +++.+  .||++++||+.-.   
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvS--kDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVS--KDGKWRIWDTDVRYEA  313 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEe--cCCcEEEeeccceEec
Confidence            999999999999999999996433221  112236788999999999999997554 45555  9999999997531   


Q ss_pred             ----CeeEEE-----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-CCCCcEEEEEEcCCCCEEEE
Q 012679          351 ----ACLNSV-----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-GHTSRVLFMAQSPDGCTVAS  420 (458)
Q Consensus       351 ----~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s  420 (458)
                          +.+++.     ..++..+.+..+|.|+.|++++|   ..|.+|..++++...+++ .|...|.+++|+++|++++|
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT  390 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence                122222     22455679999999999999875   469999999988877774 58999999999999999998


Q ss_pred             EeCCCcEEEEe
Q 012679          421 AAADETLRFWN  431 (458)
Q Consensus       421 ~s~Dg~i~iW~  431 (458)
                      +| |..+++..
T Consensus       391 cG-dr~vrv~~  400 (420)
T KOG2096|consen  391 CG-DRYVRVIR  400 (420)
T ss_pred             ec-ceeeeeec
Confidence            75 67788776

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.5e-25  Score=212.94  Aligned_cols=243  Identities=18%  Similarity=0.348  Sum_probs=197.5

Q ss_pred             ccceeeccC---CCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee
Q 012679          143 YLNLLDWGS---SNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       143 ~~~~~~~~~---~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      .++.+.|+.   +.|++++..|.|.+||+... ....+..+..|...|+++.|++ ...+|++|+.||.|++||++..+-
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            455678875   45777778999999999862 2233667889999999999998 567899999999999999999998


Q ss_pred             eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679          218 LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW  294 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw  294 (458)
                      ..++.+ ....|..+.|.   +..++++...|.+.+||++........+.+|.++|.|+.|+|++.+||+||.|+.|+||
T Consensus       169 ~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  169 KSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             cccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            888887 88899999994   68999999999999999999888888999999999999999999999999999999999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeC-CCCeEEEEEcCCCC
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDT-GSQVCALLWNKNER  372 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~  372 (458)
                      |.......    .+.++ ...++|.++.|-|...+.||+++--.|..|+|||++.. -+..++.. ...++.++|.....
T Consensus       248 d~t~~~~~----~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~  322 (839)
T KOG0269|consen  248 DMTDSRAK----PKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDR  322 (839)
T ss_pred             eccCCCcc----ceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCc
Confidence            99876542    13443 23578999999999999999987668899999999864 34555544 45678888877544


Q ss_pred             eEEEEecCCCCcEEEEeCCC
Q 012679          373 ELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~  392 (458)
                      .++-+ +..|+.|..-.+++
T Consensus       323 ~~l~s-~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  323 INLWS-CSKDGTVLQHLFKN  341 (839)
T ss_pred             eeeEe-ecCccHHHHhhhhc
Confidence            44444 44777766544443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-22  Score=174.41  Aligned_cols=239  Identities=18%  Similarity=0.290  Sum_probs=201.4

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccC
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV  255 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  255 (458)
                      .+.+|..+++.|.++.+|.+|.+++.|.++.||-..+|+.+.++.+ |.+.|+|+..  +...+++|+.|.++++||+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            4678999999999999999999999999999999999999999998 9999999887  478999999999999999999


Q ss_pred             CCeeEEEEcccccceEeEEEcCCCCEEEEEEC-----CCcEEEEeCCCCCCC-CcceeeeeecccccceeEEEecCCCCc
Q 012679          256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGN-----DNLLHIWDRSMASSN-SVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-----dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      ++.+ ..++ ...+|..+.|+++|++++....     .+.|.++|++..... ....+...+..+...++.+.|.|-+..
T Consensus        84 Gk~l-a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   84 GKQL-ATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             CcEE-EEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            8863 4443 4678999999999999887754     467999999865421 122346777788899999999997665


Q ss_pred             EEEEeCCCCCCeEEEEECCCCCeeEEE--eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679          330 LLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL  407 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~  407 (458)
                      +++ |.  .||.|..||+++|+.+..-  .+...|+.++++++..++++  |+.|.+-++||..+.+.+.++. ...+|+
T Consensus       162 ii~-Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v~Kty~-te~PvN  235 (327)
T KOG0643|consen  162 IIA-GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEVLKTYT-TERPVN  235 (327)
T ss_pred             EEE-ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceeeEEEee-eccccc
Confidence            554 44  9999999999998655443  35678999999999999999  6699999999999999999987 567899


Q ss_pred             EEEEcCCCCEEEEEeCCC
Q 012679          408 FMAQSPDGCTVASAAADE  425 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg  425 (458)
                      +.+++|.-..++.|+...
T Consensus       236 ~aaisP~~d~VilgGGqe  253 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGGQE  253 (327)
T ss_pred             ceecccccceEEecCCce
Confidence            999999877777776543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=5.7e-24  Score=197.17  Aligned_cols=262  Identities=18%  Similarity=0.246  Sum_probs=195.0

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLII  249 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~  249 (458)
                      -..+.+|...|+++++.|.|-.|++|+.|-.|++||+...    +..+.+.......|.+++|  .+..|++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            4567889999999999999999999999999999998643    3344455446678889999  478888888888999


Q ss_pred             EEEccCCCee-----------EEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc
Q 012679          250 NNDVRVRDHI-----------VETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA  317 (458)
Q Consensus       250 vwd~~~~~~~-----------~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  317 (458)
                      ++|-......           +...+||...++|.+|+|+ ...|++++.||+++|||+................+..-.
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            9986533211           1234589999999999995 457899999999999999876642111000111223446


Q ss_pred             eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEE----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSV----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      ++.++|++++.. +|+|.  .||.|.+|+......  ...+    ..+..|+++.|+++|++|++-  +.|+++++||++
T Consensus       320 ~tsC~~nrdg~~-iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR--g~D~tLKvWDLr  394 (641)
T KOG0772|consen  320 VTSCAWNRDGKL-IAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR--GFDDTLKVWDLR  394 (641)
T ss_pred             ceeeecCCCcch-hhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc--cCCCceeeeecc
Confidence            889999998766 55554  899999999865432  2222    124579999999999999994  479999999998


Q ss_pred             Cce-eeEEEeCCC--CcEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCCcccccC
Q 012679          392 SMV-KMAELSGHT--SRVLFMAQSPDGCTVASAAA------DETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       392 ~~~-~~~~~~~h~--~~V~~l~~spdg~~l~s~s~------Dg~i~iW~~~~~~~~~~~~  442 (458)
                      ..+ ++....+-.  .+-+.++|||+.++|+||..      -|++.|||-.+-+.+.+..
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID  454 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence            754 455544433  34578999999999999864      4789999987776665544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.1e-23  Score=202.43  Aligned_cols=273  Identities=17%  Similarity=0.224  Sum_probs=210.5

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .-+++-+++.+++++.||.|++|+...-.- .-..+..+...|.+++.  ++.+|++|+.+++|.+|.+..++.-..+..
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~R   94 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEE-EPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILAR   94 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCccc-CCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeee
Confidence            334444457799999999999998765421 11222225677777775  455999999999999999988876544443


Q ss_pred             CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          224 GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       224 ~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                       ...++.+++++  |.+++.|+.|-.|++-++..... ...+.+|..+|.++.|+|++++||+.+-||.|+|||+..+..
T Consensus        95 -ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen   95 -FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             -eeccceEEEEecCCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence             56678888884  67999999999999999987765 688999999999999999999999999999999999998766


Q ss_pred             CCcceeeeee-ccc-ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEE
Q 012679          302 NSVTQWLHRL-EEH-TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLS  376 (458)
Q Consensus       302 ~~~~~~~~~~-~~h-~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~  376 (458)
                      ......+..- ... ...+..++|+|++..+++.+   .|++|++|+..++.....+..   .+.++.+.|+|+|+||++
T Consensus       173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             hhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            3222111111 111 45677899999988888877   799999999999998877754   344999999999999999


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                        ++.+|.|.|||..+.+.    ......|.+++|.|++..|-.-..-|..-+|
T Consensus       250 --s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  250 --STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             --eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence              66999999999998322    2234679999999998877555555655555

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.4e-23  Score=205.76  Aligned_cols=240  Identities=13%  Similarity=0.282  Sum_probs=189.3

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCC--------------------------------CC---------------
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASD--------------------------------GT---------------  172 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~--------------------------------~~---------------  172 (458)
                      .-+-++.|+.  ..++++|.|+.|+||.+..                                ..               
T Consensus       268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~  347 (712)
T KOG0283|consen  268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC  347 (712)
T ss_pred             CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence            3466777765  5688889999999998755                                00               


Q ss_pred             -----------eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCe
Q 012679          173 -----------TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHI  238 (458)
Q Consensus       173 -----------~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~  238 (458)
                                 ..+++.+.+|.+.|.++.||.++ +|++++.|.+|+||++...+++..|.  |..-|+|++|+   .++
T Consensus       348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDry  424 (712)
T KOG0283|consen  348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRY  424 (712)
T ss_pred             ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCc
Confidence                       02344567999999999999764 89999999999999999999999998  99999999995   589


Q ss_pred             EEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee-ee--eecccc
Q 012679          239 LTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW-LH--RLEEHT  315 (458)
Q Consensus       239 l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~--~~~~h~  315 (458)
                      +++|+-||.|+||++...+  +.....-..-|++++|.|||++.++|+.+|.+++|+....+....... .+  +-..|.
T Consensus       425 FiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  425 FISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             EeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence            9999999999999997554  344444458899999999999999999999999999887654211100 00  001233


Q ss_pred             cceeEEEecCCCCc-EEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          316 SAVKAIAWCPFQSN-LLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       316 ~~v~~l~~~p~~~~-ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                       .|+.+.|.|.... +|++.   .|..|||+|.++..++..++.   ...-....|+.+|++|+++  .+|..|+||++.
T Consensus       503 -rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~--seDs~VYiW~~~  576 (712)
T KOG0283|consen  503 -RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA--SEDSWVYIWKND  576 (712)
T ss_pred             -eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe--ecCceEEEEeCC
Confidence             7999999986655 66654   899999999988888877764   2334567788999999995  499999999984


Q ss_pred             C
Q 012679          392 S  392 (458)
Q Consensus       392 ~  392 (458)
                      .
T Consensus       577 ~  577 (712)
T KOG0283|consen  577 S  577 (712)
T ss_pred             C
Confidence            4

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=1.5e-23  Score=200.76  Aligned_cols=243  Identities=25%  Similarity=0.411  Sum_probs=202.5

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE--EecCCCcccEEE-EEe---CCCeEEEEeCCCcEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR--TLRGGHRSRVGS-LAW---NNHILTTGGMDGLII  249 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~--~~~~~~~~~v~~-l~~---~~~~l~sg~~dg~i~  249 (458)
                      .+.+.+|...|..++..+. ..+++++.||++++|+-...+.+.  .+.+ |.+-|.+ +++   ++..|++|+.|+.|.
T Consensus         7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceeccc-CcceeeccceeccccCcceEeecccceEE
Confidence            5678899999999987754 478999999999999976665544  2333 6666666 666   356799999999999


Q ss_pred             EEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679          250 NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       250 vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      +|...... +...+.+|.+.||+++...++. +++||.|.++++|-....        ...+.+|++.|++++.-|.+  
T Consensus        85 v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--------~~~l~gH~asVWAv~~l~e~--  152 (745)
T KOG0301|consen   85 VFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--------VYSLQGHTASVWAVASLPEN--  152 (745)
T ss_pred             EEecCCCC-chhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--------hcccCCcchheeeeeecCCC--
Confidence            99998666 4789999999999999888887 999999999999986543        45588999999999999964  


Q ss_pred             EEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE
Q 012679          330 LLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF  408 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~  408 (458)
                      .+++|+  .|++|++|.-  +++++++..+ .-|..+++-+++.++-+  + .||.|++|++ +++.+.++.||+.-|.+
T Consensus       153 ~~vTgs--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc--s-NDg~Ir~w~~-~ge~l~~~~ghtn~vYs  224 (745)
T KOG0301|consen  153 TYVTGS--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC--S-NDGSIRLWDL-DGEVLLEMHGHTNFVYS  224 (745)
T ss_pred             cEEecc--CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEee--c-CCceEEEEec-cCceeeeeeccceEEEE
Confidence            777776  9999999985  7788888654 56899999988777654  2 7999999999 88999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          409 MAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +....++..++++++|++++||+...-.+...
T Consensus       225 is~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~  256 (745)
T KOG0301|consen  225 ISMALSDGLIVSTGEDRTLRIWKKDECVQVIT  256 (745)
T ss_pred             EEecCCCCeEEEecCCceEEEeecCceEEEEe
Confidence            99888889999999999999999874444433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4e-23  Score=189.33  Aligned_cols=280  Identities=16%  Similarity=0.300  Sum_probs=221.5

Q ss_pred             ccccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCcee
Q 012679          141 DYYLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       141 d~~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ...++++.|++.  -+++++.|+.++||.++......+..+.-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            346889999984  58999999999999987655555566555678999999999999 889999999999999988775


Q ss_pred             eEE--ecCCCc-ccEE--EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          218 LRT--LRGGHR-SRVG--SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       218 ~~~--~~~~~~-~~v~--~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ...  +.+ +. ..+.  .++-++++|+..+..|.|.+.-..+++. +..++ -.+.|..++|+.|++.|++++.+|.|.
T Consensus       293 ~k~~~~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  293 TKLKPPYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             ccccCCCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence            432  222 33 2223  3444689999999999999998887764 34443 367899999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccce--eEEEecCCCCcEEEEeCCCCCCeEEEEECCC------CCeeEEEe-CCCCeE
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAV--KAIAWCPFQSNLLATGGGGGDRCIKFWNTHT------GACLNSVD-TGSQVC  363 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~------~~~~~~~~-~~~~v~  363 (458)
                      +||++....      ++++.. .+.|  ++++.++++ .++|+|+  ..|.|.|||..+      .+++..+. ....|+
T Consensus       370 v~nl~~~~~------~~rf~D-~G~v~gts~~~S~ng-~ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It  439 (514)
T KOG2055|consen  370 VWNLRQNSC------LHRFVD-DGSVHGTSLCISLNG-SYLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT  439 (514)
T ss_pred             EEecCCcce------EEEEee-cCccceeeeeecCCC-ceEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence            999998866      566543 2333  456666754 4888876  999999999654      34555443 356799


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH---TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h---~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++.|+++...|+.++....+.+++-.+++......+...   -+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus       440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            999999999999988778999999999998887776543   3569999999999999999999999999874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-23  Score=192.80  Aligned_cols=259  Identities=19%  Similarity=0.287  Sum_probs=209.9

Q ss_pred             cceeeccCCC-eEEEE--cCCEEEEEECC--CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          144 LNLLDWGSSN-VLAIA--LGSTVYLWDAS--DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       144 ~~~~~~~~~~-~la~~--~d~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      ++.+.|+..+ +++++  .|..+.+|.-.  ++++..+....+.  .-.|++......|+++|+..+.|+|||+....+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h  114 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH  114 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence            5678898876 44443  35678888643  3334444444332  4556666666689999999999999999966666


Q ss_pred             EEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCE-EEEEECCCcEEEE
Q 012679          219 RTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQ-LASGGNDNLLHIW  294 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~-l~sg~~dg~i~iw  294 (458)
                      +.+.. |...|+++.++  ..+|++++..|.|.+..+.++... ..+. +..+.|.-+.|+|..+. |.+++.+|.|.+|
T Consensus       115 r~lkd-h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-t~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  115 RFLKD-HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             hhccC-CcceeEEEEecCCcceeEEeccCCcEEEEecccCccc-cceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            66666 99999999995  689999999999999999887753 3333 33556778999997665 5788999999999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  374 (458)
                      |.......     .+-...|.++...|+|+|.++.++++.|  .|..|.+||+...+....+....+...++|.++|.+|
T Consensus       193 Dv~g~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L  265 (673)
T KOG4378|consen  193 DVQGMSPI-----FHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYL  265 (673)
T ss_pred             eccCCCcc-----cchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEE
Confidence            99877652     3455689999999999999999999988  9999999999999999999889999999999999999


Q ss_pred             EEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCC
Q 012679          375 LSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      ++  |...|.|..||++. ..++..+..|...|++++|-|..
T Consensus       266 ~a--G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  266 CA--GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             Ee--ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99  88999999999986 46788889999999999997754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=5.4e-23  Score=188.35  Aligned_cols=284  Identities=17%  Similarity=0.214  Sum_probs=215.0

Q ss_pred             cccceeeccC--C-C-eEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC
Q 012679          142 YYLNLLDWGS--S-N-VLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       142 ~~~~~~~~~~--~-~-~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~  214 (458)
                      ..+.++.|+|  + . +++|...|.|-+||+.+  .....+..+..|..+|.++.|+| +-..+++.+.||+|++-|++.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~  266 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG  266 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence            3577899998  2 3 45555679999999952  22334566778999999999999 556889999999999999987


Q ss_pred             ceeeEEecC-CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCc
Q 012679          215 NRQLRTLRG-GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNL  290 (458)
Q Consensus       215 ~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~  290 (458)
                      +..-..+.. .....+..+.++  ...++.|..-|...+||.++.......+.-|...|++++++|- ..+||+||.|++
T Consensus       267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T  346 (498)
T KOG4328|consen  267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT  346 (498)
T ss_pred             hhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence            653322221 133455566663  4566677777799999999988777788889999999999994 567899999999


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC----CCCCeeEEEeCCCC-----
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT----HTGACLNSVDTGSQ-----  361 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~----~~~~~~~~~~~~~~-----  361 (458)
                      ++|||++.......  ++.....|...|.+..|+|.+..++.++   .|..|+|||.    ....+..++.+...     
T Consensus       347 ~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl  421 (498)
T KOG4328|consen  347 AKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL  421 (498)
T ss_pred             eeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccc
Confidence            99999998765432  2344558999999999999999966665   8999999998    44556666665432     


Q ss_pred             -eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC-cEEE-EEEcCCCCEEEEEe-CCCcEEEEec
Q 012679          362 -VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS-RVLF-MAQSPDGCTVASAA-ADETLRFWNV  432 (458)
Q Consensus       362 -v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~-~V~~-l~~spdg~~l~s~s-~Dg~i~iW~~  432 (458)
                       .....|.|+..++++  |..-..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++|+ ..|.|.||--
T Consensus       422 T~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  422 TPFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cchhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence             446689999988888  66777899999999998888755443 4444 47999887555554 5788888853

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=177.81  Aligned_cols=278  Identities=16%  Similarity=0.214  Sum_probs=211.7

Q ss_pred             cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      .+++.|+.  ..++.|+.+|.|.|||..+..+  -..+.+|..+|++++||+||+.|++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            56677776  4567777899999999998876  5567889999999999999999999999999999999999999999


Q ss_pred             cCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcc---cccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          222 RGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRG---HNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      .  ..++|....|++   +..++.-.+..-.+-++..+.+.+.....   -.....+..|.+.|+++++|...|.+.++|
T Consensus       104 r--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~  181 (405)
T KOG1273|consen  104 R--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD  181 (405)
T ss_pred             E--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence            8  889999999953   44444444444555555543321111111   111122346889999999999999999999


Q ss_pred             CCCCCCCCcceeeeeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-------Cee--EEE---eCCCCe
Q 012679          296 RSMASSNSVTQWLHRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-------ACL--NSV---DTGSQV  362 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-------~~~--~~~---~~~~~v  362 (458)
                      ..+.+.      +..++-.. ..|+.+.++-.+..++.-.   .|+.||.|+++.-       ++.  +.+   -...+-
T Consensus       182 a~t~e~------vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  182 AETLEC------VASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             cchhee------eeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            998766      55555444 7899999998766666644   7999999998631       111  111   123456


Q ss_pred             EEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          363 CALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      .+++|+.+|.++++++ .....++||.-..|..+..+.|.. .....+.|+|-...|++- ..|.+++|.+...+
T Consensus       253 k~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             hheeecCCccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence            7889999999999875 467889999999999999999887 567889999998888877 78999999985443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=3.9e-23  Score=179.38  Aligned_cols=223  Identities=22%  Similarity=0.375  Sum_probs=179.5

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee----------eE----EecCCCcccEEEEEe---CCCeEEE
Q 012679          180 DDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ----------LR----TLRGGHRSRVGSLAW---NNHILTT  241 (458)
Q Consensus       180 ~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~----------~~----~~~~~~~~~v~~l~~---~~~~l~s  241 (458)
                      ..|.+.|.++...+ .|+|+++|+.||.|.|||++....          +.    .-..+|.-.|.++.|   +..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35789999999988 799999999999999999875431          11    112358888999999   6789999


Q ss_pred             EeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccce
Q 012679          242 GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV  318 (458)
Q Consensus       242 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  318 (458)
                      ++.|.+++|||..+.+.. ..+ ...+.|.+-+|+|-   .-++|+|..|-.|++-|+.++..      .+.+.+|...|
T Consensus       120 sSFDhtlKVWDtnTlQ~a-~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~------sH~LsGHr~~v  191 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEA-VDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF------SHTLSGHRDGV  191 (397)
T ss_pred             ccccceEEEeecccceee-EEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc------eeeeccccCce
Confidence            999999999999887652 223 24567888888883   45789999999999999999988      89999999999


Q ss_pred             eEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee--
Q 012679          319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK--  395 (458)
Q Consensus       319 ~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~--  395 (458)
                      .++.|+|...++|++|+  .||.|++||++.. .|+..++                                ..+++.  
T Consensus       192 laV~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD--------------------------------~hn~k~~p  237 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLD--------------------------------QHNTKRPP  237 (397)
T ss_pred             EEEEeccCceeEEEecC--CCceEEEEEeecccceeEEee--------------------------------cccCccCc
Confidence            99999999999999987  9999999999864 3444433                                222211  


Q ss_pred             -eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          396 -MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       396 -~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                       +.+-..|.+.|..++|+.||.++++++.|..+++|+..++....+...+
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~  287 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP  287 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence             1223479999999999999999999999999999999988776654433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.1e-22  Score=173.53  Aligned_cols=249  Identities=18%  Similarity=0.342  Sum_probs=190.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCcccEEEEEe-C---CCeEEEEeCCCcEEEE
Q 012679          180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAW-N---NHILTTGGMDGLIINN  251 (458)
Q Consensus       180 ~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~-~---~~~l~sg~~dg~i~vw  251 (458)
                      .+|.+-|.++.|.+.|+++|+|+.|++|+|||....    .+....+. |.+.|..+.| +   |..+++++.|+++.||
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEecCCceeee
Confidence            468889999999999999999999999999996433    34555666 9999999999 2   7899999999999999


Q ss_pred             EccCCC--------eeEEEEcccccceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------cc
Q 012679          252 DVRVRD--------HIVETYRGHNQEVCGLKWSA--SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------EH  314 (458)
Q Consensus       252 d~~~~~--------~~~~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h  314 (458)
                      .-....        ....++....+.|+.++|.|  -|-.||+++.||.++||+.-...........+.+.       .+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            752111        12456667788999999999  47789999999999999976654432222233333       45


Q ss_pred             ccceeEEEecCC--CCcEEEEeCCCCC-----CeEEEEECCCCC----eeEEE-eCCCCeEEEEEcCCC----CeEEEEe
Q 012679          315 TSAVKAIAWCPF--QSNLLATGGGGGD-----RCIKFWNTHTGA----CLNSV-DTGSQVCALLWNKNE----RELLSSH  378 (458)
Q Consensus       315 ~~~v~~l~~~p~--~~~ll~s~~g~~d-----~~i~lwd~~~~~----~~~~~-~~~~~v~~~~~s~~~----~~l~~~~  378 (458)
                      .....|+.|+|.  ...++|.|+  .+     +.++||....+.    .+.++ .+..+|+.++|.|+-    ..|++  
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv--  244 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV--  244 (361)
T ss_pred             cCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE--
Confidence            667789999973  346788875  32     378888765533    22222 457789999999963    33444  


Q ss_pred             cCCCCcEEEEeCCC--------------------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          379 GFTQNQLTLWKYPS--------------------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       379 g~~d~~i~iwd~~~--------------------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +..|| |+||++..                    -+.+.++.+|.+.|..+.|+-.|..|++.|.||.||+|...-
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            55788 99999862                    135667889999999999999999999999999999998653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=185.05  Aligned_cols=268  Identities=22%  Similarity=0.347  Sum_probs=201.5

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-------CCCEEEEEecCCeEEEEeCCCcee---eEE-----------
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-------DGRHIAIGLNNCQVQLWDSTANRQ---LRT-----------  220 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-------~g~~la~g~~dg~v~iwd~~~~~~---~~~-----------  220 (458)
                      .||||+-....+.....+-- .....|++|..       -|+|+|+|+.|..|.|||+.-...   ..+           
T Consensus       153 EvYVyn~~e~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k  231 (463)
T KOG0270|consen  153 EVYVYNEEEENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKK  231 (463)
T ss_pred             EEEEEcCCCcceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhh
Confidence            57888765544321111111 23446888854       368999999999999999742110   000           


Q ss_pred             ------ecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCc
Q 012679          221 ------LRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNL  290 (458)
Q Consensus       221 ------~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~  290 (458)
                            ...+|...|.+|+|+   .++|++|+.|.+|++||+.++++ ..++..|...|.++.|+| ...+|++|+.|++
T Consensus       232 ~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~  310 (463)
T KOG0270|consen  232 KGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT  310 (463)
T ss_pred             hcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccce
Confidence                  012488999999997   48999999999999999998885 677788999999999999 4678899999999


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-CeeEEEe-CCCCeEEEEEc
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVD-TGSQVCALLWN  368 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~~~~~-~~~~v~~~~~s  368 (458)
                      |.+.|.+....      ....-...+.|..++|.|.....+.++.  .||+++-+|++.. +++.++. |..+|.+++++
T Consensus       311 V~l~D~R~~~~------s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n  382 (463)
T KOG0270|consen  311 VALKDCRDPSN------SGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN  382 (463)
T ss_pred             EEeeeccCccc------cCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEec
Confidence            99999996433      1111224578999999999998888876  9999999999985 8888875 56789999999


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC---CCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCccccc
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH---TSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h---~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      ..-..++++ +..++.+++|++..-...... .|   -++..|.++.|+-. +++.||..+.++|||+.....+.+.
T Consensus       383 ~~~p~~l~t-~s~d~~Vklw~~~~~~~~~v~-~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka  457 (463)
T KOG0270|consen  383 IQTPGLLST-ASTDKVVKLWKFDVDSPKSVK-EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA  457 (463)
T ss_pred             CCCCcceee-ccccceEEEEeecCCCCcccc-cccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence            999988887 568999999998754432211 12   24567788888644 5677888888999999987766543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=1.3e-21  Score=181.15  Aligned_cols=294  Identities=16%  Similarity=0.223  Sum_probs=227.2

Q ss_pred             ccccceeeccC---CCeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679          141 DYYLNLLDWGS---SNVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       141 d~~~~~~~~~~---~~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~  214 (458)
                      +--+.+++|++   +.++.+-.   +..+.+||...+..  +...+.-++.|..+.|+|.+..|++....|.+.+|+.+.
T Consensus       154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~--~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~  231 (626)
T KOG2106|consen  154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK--LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG  231 (626)
T ss_pred             cccceeeeecccCCCceEEEecCCCccccchhhchhhhc--cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence            34577888876   34444433   34789999987665  444444567899999999777677777788999999998


Q ss_pred             ceeeEE---ecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCc
Q 012679          215 NRQLRT---LRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL  290 (458)
Q Consensus       215 ~~~~~~---~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~  290 (458)
                      +...++   +.......|.|++|. +.-+++|..+|.|.||+..+... .+....|.+.|.+++.-.+|.+|- |+.|..
T Consensus       232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk  309 (626)
T KOG2106|consen  232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK  309 (626)
T ss_pred             CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCccEee-cCccce
Confidence            866554   344345789999994 57789999999999999976654 444459999999999999997655 999999


Q ss_pred             EEEEeCCCCCCCCc----------------------------------ceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          291 LHIWDRSMASSNSV----------------------------------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       291 i~iwd~~~~~~~~~----------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      |..||-.-.+....                                  ........+|......++.+|+ ..++++++ 
T Consensus       310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~g-  387 (626)
T KOG2106|consen  310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCG-  387 (626)
T ss_pred             EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeecc-
Confidence            99999322211000                                  0001233468888899999996 55556666 


Q ss_pred             CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679          337 GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  416 (458)
                       .|+.+++|+  ..+++.+.....+..++.|+|.| .+++  |+..|...+.|.++...+..-.. ..+++.++|+|+|.
T Consensus       388 -qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~  460 (626)
T KOG2106|consen  388 -QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA  460 (626)
T ss_pred             -CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence             999999999  77788888889999999999999 6666  77899999999999666555444 88999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCcccccCCCCCC
Q 012679          417 TVASAAADETLRFWNVFGAPQVISKSAPKPN  447 (458)
Q Consensus       417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~~  447 (458)
                      +||.|+.|+.|+||.+.......+...+..+
T Consensus       461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             EEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence            9999999999999999988877777666655

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.4e-23  Score=175.33  Aligned_cols=247  Identities=18%  Similarity=0.317  Sum_probs=194.5

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc---eeeEEecCCCcccEEEEEe-C---CCeEEEEeCCCcEEEEE
Q 012679          180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN---RQLRTLRGGHRSRVGSLAW-N---NHILTTGGMDGLIINND  252 (458)
Q Consensus       180 ~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~v~~l~~-~---~~~l~sg~~dg~i~vwd  252 (458)
                      ..|.+.|.++...-.|++||+++.|++|+|+.+..+   +.+.++.+ |.++|..++| +   |.+|++++.||.|.||.
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            468888999988889999999999999999998765   45677877 9999999999 4   78999999999999999


Q ss_pred             ccCCCe-eEEEEcccccceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC-
Q 012679          253 VRVRDH-IVETYRGHNQEVCGLKWSA--SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS-  328 (458)
Q Consensus       253 ~~~~~~-~~~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-  328 (458)
                      -..+.- .......|...|++++|.|  .|-.||+++.||.|.|.+++....-..   ......|.-.|++++|.|-.. 
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---SKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---hhhhhccccccceeeecCcCCC
Confidence            876642 1234568999999999988  477899999999999999887622111   234568999999999999521 


Q ss_pred             ------------cEEEEeCCCCCCeEEEEECCCCCee--EEEe-CCCCeEEEEEcCCC----CeEEEEecCCCCcEEEEe
Q 012679          329 ------------NLLATGGGGGDRCIKFWNTHTGACL--NSVD-TGSQVCALLWNKNE----RELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       329 ------------~ll~s~~g~~d~~i~lwd~~~~~~~--~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~d~~i~iwd  389 (458)
                                  .-|++||  .|..|++|+..++.-+  .++. +..-|..++|.|.-    .+|++  +..||.+.||.
T Consensus       164 g~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt  239 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWT  239 (299)
T ss_pred             ccccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEE
Confidence                        3478876  9999999999887422  2233 34569999999975    33444  55899999998


Q ss_pred             CCCc--e-eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          390 YPSM--V-KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       390 ~~~~--~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ....  . ....++.....+..+.||..|+.|+.++.|+.|.+|.-..
T Consensus       240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            7632  1 1222344567899999999999999999999999997543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.8e-24  Score=207.80  Aligned_cols=212  Identities=25%  Similarity=0.483  Sum_probs=190.4

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      ..++.|+.+..+-+|.+..-.  .+..+.+|..+|.++.|+++..+|+.|+.+|+|++||++..+.++++.+ |...+.+
T Consensus        41 r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~s  117 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITS  117 (825)
T ss_pred             eeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcce
Confidence            456777778888899876443  3667889999999999999999999999999999999999999999998 9999999


Q ss_pred             EEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeee
Q 012679          232 LAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       232 l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  309 (458)
                      +.|+  +.+.++|+.|+.+++||++..++ ...+.+|...|..+.|+|+|+++++|+.|..++|||...++.      +.
T Consensus       118 v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~------~~  190 (825)
T KOG0267|consen  118 VDFHPYGEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL------SK  190 (825)
T ss_pred             eeeccceEEeccccccccceehhhhccCc-eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc------cc
Confidence            9997  47888999999999999997664 788889999999999999999999999999999999998887      78


Q ss_pred             eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEE
Q 012679          310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLS  376 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~  376 (458)
                      .|..|.+.+.++.|+| ...++++|+  .|+++++||+++.+.+...+. ...|.+..|++++..+++
T Consensus       191 ef~~~e~~v~sle~hp-~e~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~  255 (825)
T KOG0267|consen  191 EFKSHEGKVQSLEFHP-LEVLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS  255 (825)
T ss_pred             ccccccccccccccCc-hhhhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec
Confidence            8999999999999999 588888877  999999999999888877655 457999999999999887

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=3e-22  Score=192.14  Aligned_cols=288  Identities=16%  Similarity=0.269  Sum_probs=218.3

Q ss_pred             eeccC--CCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCC-----------CCEEEEEecCCeEEEEeC
Q 012679          147 LDWGS--SNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPD-----------GRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       147 ~~~~~--~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~-----------g~~la~g~~dg~v~iwd~  212 (458)
                      +.|++  ..+.++-.|..+||||+.+-+ +.+...+-.|...|+.|.--|.           ...+++++.||+|++||+
T Consensus       330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l  409 (1080)
T KOG1408|consen  330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL  409 (1080)
T ss_pred             EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence            44554  568888899999999998632 2334445568888888876551           124889999999999998


Q ss_pred             CCceeeEEec------------------------------------CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEcc
Q 012679          213 TANRQLRTLR------------------------------------GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       213 ~~~~~~~~~~------------------------------------~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  254 (458)
                      ..+..-..+.                                    ......+.+++.  ++.+|++|..-|+++|||+.
T Consensus       410 ~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq  489 (1080)
T KOG1408|consen  410 AFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ  489 (1080)
T ss_pred             ccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEeh
Confidence            7532111100                                    012335666666  68999999999999999998


Q ss_pred             CCCeeEEEEcccccceEeEEEcC---CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC-cE
Q 012679          255 VRDHIVETYRGHNQEVCGLKWSA---SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS-NL  330 (458)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l  330 (458)
                      .... ...+..|..+|.|+.|+.   ..++||+++.|..|+|||....-.     +++++.+|...|+++.|.-.+. .-
T Consensus       490 ~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-----l~qtld~HSssITsvKFa~~gln~~  563 (1080)
T KOG1408|consen  490 ELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-----LVQTLDGHSSSITSVKFACNGLNRK  563 (1080)
T ss_pred             hhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-----hhhhhcccccceeEEEEeecCCceE
Confidence            6654 567889999999999986   457899999999999999865433     3788999999999999977653 34


Q ss_pred             EEEeCCCCCCeEEEEECCCCCeeEEE------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---
Q 012679          331 LATGGGGGDRCIKFWNTHTGACLNSV------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG---  401 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~---  401 (458)
                      ++++|  .|+.|.+--.+...-...+      -....+..+...|..++++++  +.|..|+||++.+++++..|++   
T Consensus       564 MiscG--ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~--cQDrnirif~i~sgKq~k~FKgs~~  639 (1080)
T KOG1408|consen  564 MISCG--ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV--CQDRNIRIFDIESGKQVKSFKGSRD  639 (1080)
T ss_pred             EEecc--CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE--ecccceEEEeccccceeeeeccccc
Confidence            55555  7888766443321111111      123458899999999999995  4899999999999999999975   


Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          402 HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       402 h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      |.+....+...|.|-||++.+.|.+|.|+|+..++.+...-..
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH  682 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH  682 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence            5677889999999999999999999999999999887765433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=1.8e-23  Score=182.59  Aligned_cols=208  Identities=21%  Similarity=0.356  Sum_probs=176.1

Q ss_pred             CcccEEEEEe--CCCeEEEEeCCCcEEEEEccC-----------------CCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679          225 HRSRVGSLAW--NNHILTTGGMDGLIINNDVRV-----------------RDHIVETYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       225 ~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-----------------~~~~~~~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                      |.+++.+.+|  +|.++++|+.|..|++.|++.                 ...+++++..|..+|+++.|+|....|++|
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~  190 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG  190 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence            9999999999  589999999999999999871                 113577888999999999999999999999


Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCC
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQ  361 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~  361 (458)
                      +.|++|++||+........    .+.-....+|.++.|+|.|..+++   |+.-.++++||+.+.+|...-..    ...
T Consensus       191 srD~tvKlFDfsK~saKrA----~K~~qd~~~vrsiSfHPsGefllv---gTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  191 SRDNTVKLFDFSKTSAKRA----FKVFQDTEPVRSISFHPSGEFLLV---GTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             cCCCeEEEEecccHHHHHH----HHHhhccceeeeEeecCCCceEEE---ecCCCceeEEeccceeEeeecCcccccccc
Confidence            9999999999987655322    222234678999999997776666   34788999999999998876643    456


Q ss_pred             eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-CCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-GHT-SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      |+++.+++.++..++  |..||.|+|||--+.+++.++. .|. ..|.+..|..+|++|++.|.|..+++|.+.++..+.
T Consensus       264 i~~V~Ys~t~~lYvT--aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVT--ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             eeEEEecCCccEEEE--eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence            999999999999998  5699999999999999988874 566 459999999999999999999999999999988776


Q ss_pred             cc
Q 012679          440 SK  441 (458)
Q Consensus       440 ~~  441 (458)
                      ..
T Consensus       342 ~Y  343 (430)
T KOG0640|consen  342 EY  343 (430)
T ss_pred             EE
Confidence            54

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=178.27  Aligned_cols=263  Identities=18%  Similarity=0.294  Sum_probs=216.0

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      .++++.-.++++        ....+..+.+|.+.|..++-......+.+++.|.+.+||.++++.++.++.+ |.+.|++
T Consensus       125 srivssFk~~t~--------~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNs  195 (481)
T KOG0300|consen  125 SRIVSSFKDGTV--------KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNS  195 (481)
T ss_pred             chheeeecCCce--------eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceee
Confidence            445555555553        2233567889999999999888778999999999999999999999999998 9999999


Q ss_pred             EEeC--CCeEEEEeCCCcEEEEE------ccCC---------------------------------CeeEEEEcccccce
Q 012679          232 LAWN--NHILTTGGMDGLIINND------VRVR---------------------------------DHIVETYRGHNQEV  270 (458)
Q Consensus       232 l~~~--~~~l~sg~~dg~i~vwd------~~~~---------------------------------~~~~~~~~~h~~~v  270 (458)
                      +.|+  +.++++++.|++-.||.      +...                                 ..++..+.+|...|
T Consensus       196 ikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV  275 (481)
T KOG0300|consen  196 IKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVV  275 (481)
T ss_pred             EEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccce
Confidence            9995  68899999999999996      2110                                 01245677999999


Q ss_pred             EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      .+..|-..|+.+++++.|.+..+||++++..      ++.+.+|....+.++-+|. ..|+++.+  .|.+.++||++..
T Consensus       276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~------v~~LtGHd~ELtHcstHpt-QrLVvTsS--rDtTFRLWDFRea  346 (481)
T KOG0300|consen  276 SACDWLAGGQQMVTASWDRTANLWDVETGEV------VNILTGHDSELTHCSTHPT-QRLVVTSS--RDTTFRLWDFREA  346 (481)
T ss_pred             EehhhhcCcceeeeeeccccceeeeeccCce------eccccCcchhccccccCCc-ceEEEEec--cCceeEeccchhh
Confidence            9999999999999999999999999999987      8899999999999999995 56667766  9999999999843


Q ss_pred             -CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 012679          351 -ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHTSRVLFMAQSPDGCTVASAAADETL  427 (458)
Q Consensus       351 -~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i  427 (458)
                       ..+..+.. ...|++..|..+.+.+ +  |.+|.+|+|||++++. ++.++. ..++++.++.+..+..|+.--.+..|
T Consensus       347 I~sV~VFQGHtdtVTS~vF~~dd~vV-S--gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqv  422 (481)
T KOG0300|consen  347 IQSVAVFQGHTDTVTSVVFNTDDRVV-S--GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQV  422 (481)
T ss_pred             cceeeeecccccceeEEEEecCCcee-e--cCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceE
Confidence             23444544 4569999999877644 4  7799999999999875 566665 56789999999888899988888999


Q ss_pred             EEEecCCCC
Q 012679          428 RFWNVFGAP  436 (458)
Q Consensus       428 ~iW~~~~~~  436 (458)
                      ++||+.+..
T Consensus       423 RlfDlnG~R  431 (481)
T KOG0300|consen  423 RLFDLNGNR  431 (481)
T ss_pred             EEEecCCCc
Confidence            999997654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=2.3e-22  Score=183.05  Aligned_cols=235  Identities=20%  Similarity=0.317  Sum_probs=201.0

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      ..++++...|....+++|+.|..+.++|...++.+..+.+ |...|+.+.+++  ..+++++.|..|+||....... ..
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~  297 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PT  297 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCCcceEEeeccccccC-cc
Confidence            4588888888878899999999999999999999999998 999999999974  6788999999999999876664 56


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCC
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      ....|..+|+.+..+|.|.||+++++|++..+.|++++..      +.....  ..-.+++++|+|| +.+|.+|.  .|
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpD-gLifgtgt--~d  368 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPD-GLIFGTGT--PD  368 (506)
T ss_pred             ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE------EEEEeeccccceeEEeeEcCC-ceEEeccC--CC
Confidence            6778999999999999999999999999999999999876      333322  2345899999996 66777765  99


Q ss_pred             CeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCE
Q 012679          340 RCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCT  417 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~  417 (458)
                      +.|++||+.++..+..+.. .++|..+.|+.+|-+|++++  +|+.|++||++..+...++.-.. ..|.++.|.+.|.+
T Consensus       369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTY  446 (506)
T ss_pred             ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCe
Confidence            9999999999998888865 57899999999999999955  88999999999988877776433 36999999999999


Q ss_pred             EEEEeCCCcEEEEe
Q 012679          418 VASAAADETLRFWN  431 (458)
Q Consensus       418 l~s~s~Dg~i~iW~  431 (458)
                      |+.++.|=+|++++
T Consensus       447 L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  447 LGIAGSDLQVYICK  460 (506)
T ss_pred             EEeecceeEEEEEe
Confidence            99997775555554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.3e-24  Score=207.17  Aligned_cols=246  Identities=24%  Similarity=0.410  Sum_probs=213.3

Q ss_pred             cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679          159 LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N  236 (458)
Q Consensus       159 ~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~  236 (458)
                      ....+++|+..        .+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+ |..+|-++.|+  .
T Consensus        12 ~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E   82 (825)
T KOG0267|consen   12 RATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSE   82 (825)
T ss_pred             eeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcch
Confidence            34455667643        2345788888988877889999999999999999888777777777 99999999996  5


Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS  316 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  316 (458)
                      .+|++|+.+|+|++||++... .++++.+|...++++.|+|-+.++|+|+.|+.+++||++...+      .+.+.+|..
T Consensus        83 ~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc------~~~~~s~~~  155 (825)
T KOG0267|consen   83 RLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC------SHTYKSHTR  155 (825)
T ss_pred             hhhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc------eeeecCCcc
Confidence            789999999999999999665 4789999999999999999999999999999999999997777      788899999


Q ss_pred             ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee
Q 012679          317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK  395 (458)
Q Consensus       317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~  395 (458)
                      .|..+.|+|+| .++++++  .|..+++||...|+....+. +..++.++.|+|..-.+..  |..|+++++||+++.+.
T Consensus       156 vv~~l~lsP~G-r~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  156 VVDVLRLSPDG-RWVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEV  230 (825)
T ss_pred             eeEEEeecCCC-ceeeccC--CcceeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEE
Confidence            99999999964 4566665  89999999999999999998 5678999999988776666  77999999999999999


Q ss_pred             eEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          396 MAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       396 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      +.........|.+++|+|+|..+++|..+.
T Consensus       231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  231 ISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccCCccCCceeeeecCCceeeecCchhh
Confidence            999888889999999999999888776553

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-22  Score=186.56  Aligned_cols=275  Identities=15%  Similarity=0.214  Sum_probs=211.4

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE--ecCCeEEEEeCCCc--e--eeEEecCCC
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG--LNNCQVQLWDSTAN--R--QLRTLRGGH  225 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g--~~dg~v~iwd~~~~--~--~~~~~~~~~  225 (458)
                      .++.+++.+..++|||+..-+....+.-....-.+.++.|..... |+++  +.|..+++|.-...  +  .+....+ .
T Consensus         3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d   80 (673)
T KOG4378|consen    3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-D   80 (673)
T ss_pred             cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc-c
Confidence            457888899999999987654322221111122389999987664 4444  45668889963322  1  1222222 2


Q ss_pred             cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCC
Q 012679          226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS  303 (458)
Q Consensus       226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~  303 (458)
                        .-.|++.  ...++++|+..+.|+|||++ .+.+.+.+++|...|+++.++..+.|||+++..|.|.|..+.++..  
T Consensus        81 --~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--  155 (673)
T KOG4378|consen   81 --NAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--  155 (673)
T ss_pred             --hHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence              2233333  24789999999999999999 4556788999999999999999999999999999999999888765  


Q ss_pred             cceeeeeeccc-ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecC
Q 012679          304 VTQWLHRLEEH-TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       304 ~~~~~~~~~~h-~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                          ...+... ...|+-+.++|....+|.+++  .+|.|.+||+....++..+.  +..+...++|+|....|+++.| 
T Consensus       156 ----tt~f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-  228 (673)
T KOG4378|consen  156 ----TTTFTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-  228 (673)
T ss_pred             ----ccceecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-
Confidence                3444433 345668999999999999987  99999999999888877663  4667889999999999988877 


Q ss_pred             CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      .|..|.+||..+......+. ...+...++|+++|.+|+.|...|.|..||++..+...+.
T Consensus       229 ~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v  288 (673)
T KOG4378|consen  229 YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV  288 (673)
T ss_pred             ccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceE
Confidence            68999999999877776664 4567889999999999999999999999999987665543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2.2e-22  Score=180.23  Aligned_cols=193  Identities=23%  Similarity=0.433  Sum_probs=161.2

Q ss_pred             CCeEEEEeCCCcEEEEEccCC---------------CeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCC
Q 012679          236 NHILTTGGMDGLIINNDVRVR---------------DHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      ..+.++-+..|.|.||++...               ...+.++.+|...-.+|+|||- ...|++|..-+.|++|...++
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g  244 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG  244 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence            456677788999999998532               2346778899999999999992 334788888889999998886


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                      .-...   ...+.+|+..|..|+|+|....+|++|+  .||+|+|||++.+   .++.+-.+++.|+.+.|+....+|++
T Consensus       245 ~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas  319 (440)
T KOG0302|consen  245 SWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS  319 (440)
T ss_pred             ceeec---CccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence            54222   2346679999999999999999999998  9999999999998   56666677889999999999996665


Q ss_pred             EecCCCCcEEEEeCCC---ceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 012679          377 SHGFTQNQLTLWKYPS---MVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~---~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                        |.++|++.|||+++   ++++++++.|..+|++|.|+| +...|+++|.|.+|.+||+.-.
T Consensus       320 --G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  320 --GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             --cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence              88999999999975   578999999999999999999 4567888899999999999643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.4e-20  Score=175.92  Aligned_cols=252  Identities=12%  Similarity=0.132  Sum_probs=185.4

Q ss_pred             ceeeccCC-C-eE-EEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEE
Q 012679          145 NLLDWGSS-N-VL-AIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       145 ~~~~~~~~-~-~l-a~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~  220 (458)
                      ..+.|+++ . ++ +++.++.|++||..+++.  +..+..+. .+..++|+|+++.++++ ..++.|++||+.+.+.+..
T Consensus        34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence            45677763 3 43 345678999999998876  33444433 35788999999987665 5689999999999888777


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCC-cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-ECCCcEEEEeC
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDG-LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDR  296 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~  296 (458)
                      +..  ...+.+++|  ++.++++++.++ .+.+||.++.... .... ....+.++.|+|++++|+++ ..++.|++||+
T Consensus       111 ~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~-~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~  186 (300)
T TIGR03866       111 IPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV-DNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDV  186 (300)
T ss_pred             eeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE-EEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence            763  334567787  478888888765 4677898765542 2222 22345779999999988654 46999999999


Q ss_pred             CCCCCCCcceeeeeeccc-------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679          297 SMASSNSVTQWLHRLEEH-------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~  369 (458)
                      .+.+.      +..+..+       ......++|+|++..++++.+  .++.|.+||..+++.+..+..+..+.++.|+|
T Consensus       187 ~~~~~------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  258 (300)
T TIGR03866       187 ATRKV------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP  258 (300)
T ss_pred             Cccee------eeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECC
Confidence            87754      2222211       112346889999888766654  56789999999999887777777899999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      +++.|+++. ..++.|.+||+.+++.+.++... ...+.++++|
T Consensus       259 ~g~~l~~~~-~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       259 DEKYLLTTN-GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CCCEEEEEc-CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            999998753 36899999999999999998754 5568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1e-22  Score=188.25  Aligned_cols=249  Identities=19%  Similarity=0.241  Sum_probs=205.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCC-CcccEEEEEe--CCCeEEEEeCCCcEEEEEcc
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGG-HRSRVGSLAW--NNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~-~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  254 (458)
                      .|..-|.++.+|...+++.+|+. |.|+|||+....   .+..+..- ....|.++..  ++..|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58888999999999999999875 579999986542   22333221 3345555555  78999999999999999998


Q ss_pred             CCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          255 VRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       255 ~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      .....+ ..+.........++.+||.+..++++.||.|.|||+.+...      +..|.+|...+.||..+++|..|. +
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~------VrqfqGhtDGascIdis~dGtklW-T  568 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL------VRQFQGHTDGASCIDISKDGTKLW-T  568 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee------eecccCCCCCceeEEecCCCceee-c
Confidence            765422 23333344567899999999999999999999999999877      899999999999999999876665 5


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      ||  -|++||.||++++..+...+..++|.++-++|.+..+++  |..++.+.|......++ ..+.-|.+-|.++.|.+
T Consensus       569 GG--lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp~k-yqlhlheScVLSlKFa~  643 (705)
T KOG0639|consen  569 GG--LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKPEK-YQLHLHESCVLSLKFAY  643 (705)
T ss_pred             CC--CccceeehhhhhhhhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCccc-eeecccccEEEEEEecc
Confidence            55  999999999999999999999999999999999999999  77889998888755444 34566899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          414 DGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      -|+++++.+.|..+..|..--+..+++..
T Consensus       644 cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  644 CGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             cCceeeecCchhhhhhccCccccceeecc
Confidence            99999999999999999998887776644

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.1e-21  Score=172.04  Aligned_cols=227  Identities=19%  Similarity=0.322  Sum_probs=183.5

Q ss_pred             EEEEecCCeEEEEeCCCc------------eeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcc
Q 012679          198 IAIGLNNCQVQLWDSTAN------------RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG  265 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  265 (458)
                      |++|+....|.-+++.-.            ..+..+.. |.+.+++++.++.++++|+.|-+|+|||++.... ...+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-lg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-LGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEecceeEeccCCCCcEEEEeccchhh-hcceec
Confidence            566666655555544211            12334445 9999999999999999999999999999997765 577788


Q ss_pred             cccceEeEEEcCCCC--EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679          266 HNQEVCGLKWSASGQ--QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK  343 (458)
Q Consensus       266 h~~~v~~l~~spd~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~  343 (458)
                      |.+.|+++.|.++-.  .|++|+.||.|.+|+...-..      +..+++|.+.|+.++.+|.+..-|.+|   .|+.++
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~------~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr  152 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL------LKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLR  152 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE------eeeecccccccceeEecCCCceEEEEc---CCceee
Confidence            999999999998765  899999999999999877655      889999999999999999655555554   799999


Q ss_pred             EEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          344 FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       344 lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      +||+-+|+.-.........+.+.|+|.|.+++..   ..+.|-||.+.+.....++... .++.++.|. ++..|++|+.
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~---~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d  227 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS---GRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGD  227 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEE---eccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecC
Confidence            9999999988888777777889999999988875   3678999999887776666533 567777776 5668899999


Q ss_pred             CCcEEEEecCCCCcccc
Q 012679          424 DETLRFWNVFGAPQVIS  440 (458)
Q Consensus       424 Dg~i~iW~~~~~~~~~~  440 (458)
                      |+.|++||.........
T Consensus       228 ~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  228 NEWISLKDTDSDTPLTE  244 (362)
T ss_pred             CceEEEeccCCCcccee
Confidence            99999999987544433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.2e-23  Score=209.14  Aligned_cols=249  Identities=24%  Similarity=0.481  Sum_probs=198.6

Q ss_pred             CCCCccccceeeccC--CC----eEEEEcCCEEEEEECCC----CCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCC
Q 012679          137 DLVDDYYLNLLDWGS--SN----VLAIALGSTVYLWDASD----GTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNC  205 (458)
Q Consensus       137 ~~~~d~~~~~~~~~~--~~----~la~~~d~~v~iwd~~~----~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg  205 (458)
                      .+..+..++.++|++  ..    |+.+..||.|.+||...    ++...+.+...|.+.|..+.|++. ++.||+|+.||
T Consensus        60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g  139 (1049)
T KOG0307|consen   60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG  139 (1049)
T ss_pred             cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence            345667788999976  22    44555689999999764    344456778899999999999995 55999999999


Q ss_pred             eEEEEeCCCceeeEEec-CCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccc--cceEeEEEcCCC
Q 012679          206 QVQLWDSTANRQLRTLR-GGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHN--QEVCGLKWSASG  279 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~--~~v~~l~~spd~  279 (458)
                      .|.|||+...+.-.... ......|.+++||   .++|++++.+|.+.|||++..+.+ ..+..|.  ..+..++|+|+.
T Consensus       140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-i~ls~~~~~~~~S~l~WhP~~  218 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-IKLSDTPGRMHCSVLAWHPDH  218 (1049)
T ss_pred             cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-cccccCCCccceeeeeeCCCC
Confidence            99999998866544442 2256789999997   489999999999999999987653 3333333  457899999975


Q ss_pred             -CEEEEEECCC---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679          280 -QQLASGGNDN---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS  355 (458)
Q Consensus       280 -~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~  355 (458)
                       ..|+++++|.   .|.+||++.....     ++.+++|...|.++.|++.+..++++++  .|+.|.+||.++++.+..
T Consensus       219 aTql~~As~dd~~PviqlWDlR~assP-----~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~  291 (1049)
T KOG0307|consen  219 ATQLLVASGDDSAPVIQLWDLRFASSP-----LKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGE  291 (1049)
T ss_pred             ceeeeeecCCCCCceeEeecccccCCc-----hhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeee
Confidence             4566776654   6999999887653     7778899999999999998888888887  999999999999999999


Q ss_pred             EeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679          356 VDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV  394 (458)
Q Consensus       356 ~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~  394 (458)
                      +... .-+..+.|+|....++++ .+-+|.|.||.+....
T Consensus       292 ~p~~~nW~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  292 LPAQGNWCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cCCCCcceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence            9774 458899999999866665 4479999999986543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.6e-22  Score=182.41  Aligned_cols=234  Identities=17%  Similarity=0.318  Sum_probs=185.2

Q ss_pred             CeEEEEcCCEEEEEECCCC-CeeeEEE------------------ecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeC
Q 012679          153 NVLAIALGSTVYLWDASDG-TTSELVT------------------VDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~-~~~~~~~------------------~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~  212 (458)
                      .++.|..+..|.|||+.-- .+.+...                  ..+|++.|.+++|+.. .+.||+|+.|.+|++||+
T Consensus       194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~  273 (463)
T KOG0270|consen  194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV  273 (463)
T ss_pred             eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence            4555567999999997621 1112222                  2368899999999874 568999999999999999


Q ss_pred             CCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECC
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGND  288 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~d  288 (458)
                      .++++...+.. |...|.++.|+   +.+|++|+.|++|.+.|.+.....-... ...+.|-.++|.|. ...+++++.|
T Consensus       274 ~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  274 DTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             CCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCC
Confidence            99999999996 99999999995   6899999999999999999644322222 24678999999995 5567888899


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEE
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCAL  365 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~  365 (458)
                      |+|+-+|+|....     ++.++..|.+.|.+|++++..+.++++++  .|+.+++|++..........+   -+...++
T Consensus       352 G~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  352 GTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF  424 (463)
T ss_pred             ceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeec
Confidence            9999999998753     38899999999999999999999999987  999999999876544322221   1337788


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKM  396 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~  396 (458)
                      ++.|+-..+++.+| ..+.++|||+.+...+
T Consensus       425 ~~~~~~a~~la~GG-~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGG-EKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccCCCcceEEEecC-ccceEEEeecccChhH
Confidence            88999888888744 6779999998776544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.4e-21  Score=181.43  Aligned_cols=245  Identities=19%  Similarity=0.337  Sum_probs=202.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-eEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCee
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-LRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHI  259 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~  259 (458)
                      ....|.+++|+.+.+.||++-.+|.|.||++..+-. ...+.++....|-+|+|. +..|++.+.+|.|.-||+.+... 
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~-  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ-  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce-
Confidence            356799999999999999999999999999987643 445666567889999995 89999999999999999998775 


Q ss_pred             EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      ...+....+.|.+++.+|.+..++.|+.||.+..++...+..    +....+....+.|.+++|+|++..+ ++|  +.|
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I----~~~r~l~rq~sRvLslsw~~~~~~i-~~G--s~D  175 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI----TYKRSLMRQKSRVLSLSWNPTGTKI-AGG--SID  175 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE----EEEeecccccceEEEEEecCCccEE-Eec--ccC
Confidence            566677789999999999999999999999777777665543    2234455567899999999975444 444  499


Q ss_pred             CeEEEEECCCCCeeEEEeC-----C----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679          340 RCIKFWNTHTGACLNSVDT-----G----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA  410 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~-----~----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~  410 (458)
                      |.|++||..++..+..+..     .    .-|+++.+-.++ .|++  |.+-|.|.+||...+..+..+..|...|.+|+
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s--gDS~G~V~FWd~~~gTLiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS--GDSAGTVTFWDSIFGTLIQSHSCHDADVLALA  252 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE--ecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence            9999999999987773321     1    126777777554 4444  78899999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          411 QSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       411 ~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      ..+++.+++++|.|+.|.-+...+...
T Consensus       253 v~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  253 VADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EcCCCCeEEEccCCCceEEEEecCCcc
Confidence            999999999999999999998876644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=175.75  Aligned_cols=218  Identities=24%  Similarity=0.462  Sum_probs=173.6

Q ss_pred             EEEcCCEEEEEECCC--------------CCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeE-
Q 012679          156 AIALGSTVYLWDASD--------------GTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR-  219 (458)
Q Consensus       156 a~~~d~~v~iwd~~~--------------~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~-  219 (458)
                      +-+..|.|+||++..              .+..+++++.+|.+.=+.++||| ....|++|..-+.|++|...++.-.. 
T Consensus       170 swse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd  249 (440)
T KOG0302|consen  170 SWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD  249 (440)
T ss_pred             eecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec
Confidence            334579999999752              23456889999999999999999 22347888888899999988875332 


Q ss_pred             --EecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          220 --TLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       220 --~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                        .+.+ |...|-.|+|+   ...|++|+.||.|+|||++.+.+ .....+.|.+.|+-|.|+.+..+||+|+.||+++|
T Consensus       250 ~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i  328 (440)
T KOG0302|consen  250 QRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI  328 (440)
T ss_pred             Cccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence              3444 99999999995   58999999999999999998732 22334789999999999999889999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-------------------eeE
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-------------------CLN  354 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-------------------~~~  354 (458)
                      ||++..+..   +++..++-|..+|++|.|+|.....++++|  .|..|.+||+....                   ++.
T Consensus       329 wDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF  403 (440)
T KOG0302|consen  329 WDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF  403 (440)
T ss_pred             EEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence            999987764   558899999999999999999888888877  99999999986422                   111


Q ss_pred             EEeCCCCeEEEEEcCCCCeEEEEec
Q 012679          355 SVDTGSQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       355 ~~~~~~~v~~~~~s~~~~~l~~~~g  379 (458)
                      .......+..+.|++.-.-++++++
T Consensus       404 VHqGQke~KevhWH~QiPG~lvsTa  428 (440)
T KOG0302|consen  404 VHQGQKEVKEVHWHRQIPGLLVSTA  428 (440)
T ss_pred             EecchhHhhhheeccCCCCeEEEec
Confidence            1123345777888888776666543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.1e-22  Score=182.00  Aligned_cols=266  Identities=17%  Similarity=0.228  Sum_probs=205.6

Q ss_pred             CeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          153 NVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       153 ~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      .++++.. ...|.+|.+.......  ...--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.. |-..|+|
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITc  128 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITC  128 (476)
T ss_pred             heeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeE
Confidence            3444443 3478899887544322  1122357899999999999999999999999999999999999976 9999999


Q ss_pred             EEe--CCCeEEEEeCCCcEEEEEccC--------CCeeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCC
Q 012679          232 LAW--NNHILTTGGMDGLIINNDVRV--------RDHIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       232 l~~--~~~~l~sg~~dg~i~vwd~~~--------~~~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      +.|  |+.+|++|+.||.|.+|++..        ...+...+..|.-+|+.+...+.  ..+|+++|.|.++++||+..+
T Consensus       129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g  208 (476)
T KOG0646|consen  129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG  208 (476)
T ss_pred             EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence            999  689999999999999998642        12346778899999999998764  468999999999999999988


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----------------eeEEEe-C--CC
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----------------CLNSVD-T--GS  360 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----------------~~~~~~-~--~~  360 (458)
                      ..      +.++ .....+.+++.+|- ...+++|+  .+|+|.+.++....                .+..+. +  .+
T Consensus       209 ~L------Llti-~fp~si~av~lDpa-e~~~yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  209 VL------LLTI-TFPSSIKAVALDPA-ERVVYIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             ee------eEEE-ecCCcceeEEEccc-ccEEEecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            65      4544 34678999999995 55666655  99999998876432                112222 2  24


Q ss_pred             CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEecC
Q 012679          361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS-AAADETLRFWNVF  433 (458)
Q Consensus       361 ~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s-~s~Dg~i~iW~~~  433 (458)
                      +|++++.+-||..|++  |..||.++|||..+.+.+.++....++|+.+.+.|-.+..+. -...-.+-+|++.
T Consensus       279 ~ITcLais~DgtlLlS--Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLS--GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             ceeEEEEecCccEEEe--eCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            7999999999999999  889999999999999999988767789999999664333332 2233345555543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5.6e-22  Score=175.62  Aligned_cols=275  Identities=17%  Similarity=0.254  Sum_probs=201.3

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCceeeEEecC-CCc-c
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQLRTLRG-GHR-S  227 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~~-~  227 (458)
                      +.++++...|.|++||..+++.  +..++++...+..+.|..  .+..+.+|+.||+|++||+++......+.- ++. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~--l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQL--LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhh--hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            4567777889999999999887  777888888899999987  567889999999999999988766554442 243 5


Q ss_pred             cEEEEEeC--CCeEEEEeC----CCcEEEEEccCCCeeEEE-EcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCC
Q 012679          228 RVGSLAWN--NHILTTGGM----DGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       228 ~v~~l~~~--~~~l~sg~~----dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      +..|++-+  ++++++|..    +-.|.+||+|..+.++.. ...|...|+++.|+| +.++|++|+.||.|.|||+...
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            67777774  677777753    568999999988874444 458999999999999 5778999999999999998876


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------------CeEEEE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------------QVCALL  366 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------------~v~~~~  366 (458)
                      ...   ..+...-.|...|..+.|...+-.-+.+-+  ...+..+|+++.+.+...+....             .+... 
T Consensus       199 ~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-  272 (376)
T KOG1188|consen  199 NEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-  272 (376)
T ss_pred             cch---hhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-
Confidence            432   224444567888999999987633344433  78999999999988665543221             11111 


Q ss_pred             EcCCCCeEEEEecCCCCcEEEEeCC------CceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          367 WNKNERELLSSHGFTQNQLTLWKYP------SMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~~i~iwd~~------~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      .+|.+.-+....|..-|...++-+.      .++.+..+.+ |..-|.++.|...+..+.|||.||.|.+|....
T Consensus       273 ~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  273 HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence            2343333333334445555554432      2445666766 667789999998999999999999999999643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-20  Score=180.01  Aligned_cols=280  Identities=20%  Similarity=0.317  Sum_probs=215.0

Q ss_pred             cceeeccC-C-CeEEEEcCCEEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          144 LNLLDWGS-S-NVLAIALGSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~-~-~~la~~~d~~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +.+++++. . .++++-.+|.|.+|++..+-.. ...+. +....|.+++|++ |..|.+.+.+|.|.-||+.+++.+..
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~  105 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN  105 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCcee-eEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE
Confidence            56677765 3 4555557899999999885443 23333 4467899999995 55677888999999999999999999


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      +.. ..+.|++++.+  +..++.|+.||.+..++...+.-.. ..+.-..+.|.+++|+|++..|++|+.||.|++||..
T Consensus       106 ~d~-~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  106 IDS-NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             ecC-CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            987 88999999996  5899999999977777776544222 2334456899999999999999999999999999998


Q ss_pred             CCCCCCcce-eeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeE
Q 012679          298 MASSNSVTQ-WLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNEREL  374 (458)
Q Consensus       298 ~~~~~~~~~-~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l  374 (458)
                      .+....... .+..+.. ...-|+++.+-.  ...+++|.  .-|+|++||...+..++.+.. ...|.+++-.+++..+
T Consensus       185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v  260 (691)
T KOG2048|consen  185 SGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV  260 (691)
T ss_pred             CCceEEEeeecccccccCCceEEEEEEEee--cCcEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence            877621000 0111222 334577787774  46677765  889999999999999988864 6789999999999999


Q ss_pred             EEEecCCCCcEEEEeCCCcee----eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          375 LSSHGFTQNQLTLWKYPSMVK----MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +++  +.|+.|..|...+...    ......|...|.+++..++  .|++|+.|.+|.+-....
T Consensus       261 fsa--Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  261 FSA--GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             EEc--cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            995  3788888887765433    3334578889999999877  899999999998877654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=185.66  Aligned_cols=273  Identities=21%  Similarity=0.348  Sum_probs=211.2

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      +++.+.+.| +.-+..+.+..+++||...|..  +.++++|.+.|+|++|+.||+.+|+|+.|..|.+|...-.   ..+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCccc--ccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---cee
Confidence            677778877 4567777889999999999987  8899999999999999999999999999999999974432   333


Q ss_pred             cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679          222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      +-.|...|.|+.||+  +.|++++-. ..-+|......  +... .....|++++|..||++|+.|-.+|+|.|-+-...
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence            334999999999985  677777653 45677665332  1111 12457899999999999999999999999864333


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCC----cEEEEeCCCCCCeEEEEECCCCCeeE-EEeCCCCeEEEEEcCCCCeE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQS----NLLATGGGGGDRCIKFWNTHTGACLN-SVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~----~ll~s~~g~~d~~i~lwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l  374 (458)
                      ..    ..+..-.+...+|.+++|+|...    .++++..  ...++.++.+. |+.+. .-..+-...++.+.++|.++
T Consensus       165 ek----~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  165 EK----VKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI  237 (1081)
T ss_pred             cc----eEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence            22    11344456788999999999643    3455544  56677777664 44333 33446678899999999999


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +.  |+.|+.+.+|. +.|-.+.++......|+.++..|++++++.|+.||+|..|++-.
T Consensus       238 Li--GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  238 LL--GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EE--ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            99  77899999996 45667777766788999999999999999999999999998753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=7.4e-21  Score=174.40  Aligned_cols=258  Identities=19%  Similarity=0.265  Sum_probs=202.2

Q ss_pred             EEEecCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEeCCCce----eeEEecCCCcccEEEEEeC---CCeEEEEeCCC
Q 012679          176 LVTVDDENGPVTSVNWAPDG--RHIAIGLNNCQVQLWDSTANR----QLRTLRGGHRSRVGSLAWN---NHILTTGGMDG  246 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g--~~la~g~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg  246 (458)
                      .....-+.+.|++++|+|..  +.+|+|...|.|-+||+.+.+    .+..+.. |..+|.+|.|+   ...+++.+.||
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeeccCc
Confidence            33445578899999999943  689999999999999995332    2334444 99999999994   57899999999


Q ss_pred             cEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          247 LIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       247 ~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      +|++-|++.... .+..+......++++.|+.+...++.|.+=|...+||.++....     ...+.-|...|..++++|
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-----~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-----YENLRLHKKKITSVALNP  332 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-----chhhhhhhcccceeecCC
Confidence            999999986542 12223234556788999998888888888889999999988763     344556888999999999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCCCC-----eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC----Cceee
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHTGA-----CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP----SMVKM  396 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~----~~~~~  396 (458)
                      ...+++++++  .|++.+|||++.-.     .+.++.+...|.+..|+|.+..|++++  .|+.|+|||..    ...+.
T Consensus       333 ~~p~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~--~D~~IRv~dss~~sa~~~p~  408 (498)
T KOG4328|consen  333 VCPWFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC--QDNEIRVFDSSCISAKDEPL  408 (498)
T ss_pred             CCchheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec--cCCceEEeecccccccCCcc
Confidence            9999999998  99999999998632     256677888999999999999988854  89999999983    34444


Q ss_pred             EEEeCCCC------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          397 AELSGHTS------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       397 ~~~~~h~~------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      .++. |..      .....+|.|+..++++|-.-..|-|+|-..++.+.+...|
T Consensus       409 ~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P  461 (498)
T KOG4328|consen  409 GTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP  461 (498)
T ss_pred             ceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence            4443 321      2446789999999999999889999998888766654433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=6.2e-20  Score=176.16  Aligned_cols=282  Identities=22%  Similarity=0.411  Sum_probs=209.5

Q ss_pred             ceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC---EEEEEecCCeEEEEeCCCce--eeE
Q 012679          145 NLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR---HIAIGLNNCQVQLWDSTANR--QLR  219 (458)
Q Consensus       145 ~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~---~la~g~~dg~v~iwd~~~~~--~~~  219 (458)
                      +..+|.+..+++-|.+..|.+||..+...  ...+.+|..+|+|+.|-|+.+   ++++|+.||.|.+|.++...  .+.
T Consensus        18 ~v~sw~~~~~vafGa~~~Iav~dp~k~~i--~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~   95 (764)
T KOG1063|consen   18 KVSSWGPGGLVAFGAGPAIAVADPEKILI--VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY   95 (764)
T ss_pred             ccccccccceEEecCCceEEEeCccccee--EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE
Confidence            34678889999999999999999876533  788999999999999999877   89999999999999998443  334


Q ss_pred             EecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCC------------------------------------------
Q 012679          220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD------------------------------------------  257 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------------------------------------------  257 (458)
                      ++.+ |...+.|+.=......+.+.|+.+.+||.+..+                                          
T Consensus        96 ~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~  174 (764)
T KOG1063|consen   96 TIQG-HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY  174 (764)
T ss_pred             eecC-cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence            4444 555555544333444444688899999884322                                          


Q ss_pred             -------eeEEEEcccccceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCCCC---------------cceee----
Q 012679          258 -------HIVETYRGHNQEVCGLKWSASG---QQLASGGNDNLLHIWDRSMASSNS---------------VTQWL----  308 (458)
Q Consensus       258 -------~~~~~~~~h~~~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~~~---------------~~~~~----  308 (458)
                             ..+..+.||...|.+++|...+   -+||++|.|..|+||.+.-.....               .....    
T Consensus       175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~  254 (764)
T KOG1063|consen  175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ  254 (764)
T ss_pred             ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence                   1134567899999999998744   488999999999999875443110               00001    


Q ss_pred             ------eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEeC------CCCeEEEEEcCCCCeE
Q 012679          309 ------HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDT------GSQVCALLWNKNEREL  374 (458)
Q Consensus       309 ------~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~------~~~v~~~~~s~~~~~l  374 (458)
                            ..+.+|...|.++.|+|.+..||.+ +  .|.++.+|...+.  --+.....      ........|+|++..+
T Consensus       255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSA-S--aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i  331 (764)
T KOG1063|consen  255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSA-S--ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI  331 (764)
T ss_pred             EEEehhhhhcCcccceEEEEEccchhhheec-c--cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence                  1234899999999999987566654 3  8999999976543  33333322      1237788999999888


Q ss_pred             EEEecCCCCcEEEEeCCC---ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          375 LSSHGFTQNQLTLWKYPS---MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~---~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ++- | ..|..++|....   ..+...+.||.+.|+.++|+|.|.+|+++|.|.+-|++--..
T Consensus       332 i~~-g-~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg  392 (764)
T KOG1063|consen  332 IAH-G-RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG  392 (764)
T ss_pred             EEe-c-ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence            773 3 688999998332   234455679999999999999999999999999999987763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=5.9e-21  Score=180.23  Aligned_cols=241  Identities=19%  Similarity=0.282  Sum_probs=194.9

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC----CeEEEEeCCCcEEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN----HILTTGGMDGLIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~sg~~dg~i~vw  251 (458)
                      ...+.+|.+.|.+|+..|.|.+||+|+.||+|+||.+.++.+++++.  ..+.|.|++|++    .+|+++-... +.+-
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence            45577999999999999999999999999999999999999999998  677999999963    3444443333 3333


Q ss_pred             EccCC------------------------------------CeeEEEEcccccceEeEEEcCCCCEEEEEECC---CcEE
Q 012679          252 DVRVR------------------------------------DHIVETYRGHNQEVCGLKWSASGQQLASGGND---NLLH  292 (458)
Q Consensus       252 d~~~~------------------------------------~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d---g~i~  292 (458)
                      +..-+                                    +.-+.....|...|..+.|+..|.||++...+   ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            22111                                    01123444678899999999999999987654   4688


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-CeEEEEEcCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNE  371 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-~v~~~~~s~~~  371 (458)
                      |+++.....      ...|....+.|.++.|+|....++++    .-+.|++||+..+..++.+.++. -|..++.+|.|
T Consensus       550 iHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  550 IHQLSKRKS------QSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG  619 (733)
T ss_pred             EEecccccc------cCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence            999887665      33454556789999999988888776    46789999999988888776655 48899999999


Q ss_pred             CeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          372 RELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ..|++  |..|+.+..||+.- .++..++.-|...|+.++|++.-.++++|+.||++.|+.
T Consensus       620 Dnli~--gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  620 DNLIL--GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CeEEE--ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            99999  66899999999975 456778889999999999999999999999999999885

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=9.2e-21  Score=173.95  Aligned_cols=245  Identities=14%  Similarity=0.248  Sum_probs=199.9

Q ss_pred             ccccceeeccC--C-CeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          141 DYYLNLLDWGS--S-NVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       141 d~~~~~~~~~~--~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      ++.+.+..+.+  . ++++++....+|.||+.+.++.++..+.++. ..+.....++++++||..+..|.|.|....+++
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e  336 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE  336 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence            44555555655  2 5777777889999999999987777766654 457788899999999999999999999999999


Q ss_pred             eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-cccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      .+..++  -.+.|..+.|  ++..|++.+.+|.|++||++.... +..+.. ..-.-++++.++++.+||+|+..|.|.|
T Consensus       337 li~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  337 LITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNI  413 (514)
T ss_pred             hhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCceEEeccCcceEEE
Confidence            999998  7889999999  578999999999999999998754 444442 1223356777799999999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----CCeEEEEEcC
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----SQVCALLWNK  369 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----~~v~~~~~s~  369 (458)
                      ||.++.......+++..+..-...|.+++|+|+ ..+||.++...+..+++-.+.+......+...    +.+++++|+|
T Consensus       414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP  492 (514)
T KOG2055|consen  414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP  492 (514)
T ss_pred             eccchhhccCCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence            998776655556678888888899999999997 55666665557889999999988777766543    4599999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCC
Q 012679          370 NERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      .+.+++.  |...|.+.+|.+.
T Consensus       493 ~sG~lAv--GNe~grv~l~kL~  512 (514)
T KOG2055|consen  493 NSGYLAV--GNEAGRVHLFKLH  512 (514)
T ss_pred             CCceEEe--ecCCCceeeEeec
Confidence            9999999  8899999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=6.7e-20  Score=180.47  Aligned_cols=269  Identities=19%  Similarity=0.283  Sum_probs=204.1

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee-----eEEecCCCcccEEEEEe
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ-----LRTLRGGHRSRVGSLAW  234 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~-----~~~~~~~~~~~v~~l~~  234 (458)
                      +.++||++.... .+...+.. ...|+|++|+| +..++|.|+.+|.|.+||+..+..     +......|..+|..+.|
T Consensus       222 ~~~~vW~~~~p~-~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPN-TPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCC-CceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            489999998873 33344433 67899999999 678889999999999999987765     22233459999999999


Q ss_pred             C----CCeEEEEeCCCcEEEEEccCCCeeEEEE-----c------ccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 012679          235 N----NHILTTGGMDGLIINNDVRVRDHIVETY-----R------GHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       235 ~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~------~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~  298 (458)
                      .    +.-+++++.||.|..|+++.-..+....     .      .-...+++++|.+ +-..|+.|+.+|.|.-=+-..
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            2    4669999999999999887543221111     1      1234688999988 567889999999988733322


Q ss_pred             CCCCC--cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeCC-CCeEEEEEcCCCCeE
Q 012679          299 ASSNS--VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVDTG-SQVCALLWNKNEREL  374 (458)
Q Consensus       299 ~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~~-~~v~~~~~s~~~~~l  374 (458)
                      .....  ..+....+..|.++|.++.++|....++.+++   |.++++|... ...++..+... ..+++++|||....+
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence            22211  11224456678999999999999999999884   9999999988 66666666554 449999999999888


Q ss_pred             EEEecCCCCcEEEEeCCC--ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          375 LSSHGFTQNQLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~--~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +++ +..+|.|.|||+..  ..++.+..-+....+.+.|+++|+.|+.|...|++.+|++...
T Consensus       457 F~~-~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  457 FAT-VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             EEE-EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            877 56899999999864  4556666556667788889999999999999999999999643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.7e-21  Score=196.85  Aligned_cols=246  Identities=22%  Similarity=0.404  Sum_probs=197.0

Q ss_pred             CCCEEEEEEcCCCCE----EEEEecCCeEEEEeCCCc------eeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEE
Q 012679          183 NGPVTSVNWAPDGRH----IAIGLNNCQVQLWDSTAN------RQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLII  249 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~----la~g~~dg~v~iwd~~~~------~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~  249 (458)
                      ....+.++|.+.|..    ||.|..||.|.+||...-      ..+.+... |.+.|..+.||   +++|++|+.||.|.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEE
Confidence            456899999997765    888999999999997652      23445555 99999999996   57999999999999


Q ss_pred             EEEccCCCeeEEE-EcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc--ceeEEEecC
Q 012679          250 NNDVRVRDHIVET-YRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS--AVKAIAWCP  325 (458)
Q Consensus       250 vwd~~~~~~~~~~-~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p  325 (458)
                      |||+...+..... -......|.+++|+.. ...|++++.+|.+.|||++..+.      +..+..+.+  .+..++|+|
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p------ii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP------IIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc------ccccccCCCccceeeeeeCC
Confidence            9999875543222 2235678999999874 55789999999999999998865      555555544  477899999


Q ss_pred             CCCcEEEEeCC-CCCCeEEEEECCCC-CeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          326 FQSNLLATGGG-GGDRCIKFWNTHTG-ACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       326 ~~~~ll~s~~g-~~d~~i~lwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      +...-++++++ ...-.|.+||++.- .+++.+. |...|.++.|++.+..++.++| .|+.|.+|+.++++.+.++...
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEecCCCceEeeecCCC
Confidence            98877766652 22346999998863 4666663 4567999999999966666656 8999999999999999999888


Q ss_pred             CCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 012679          403 TSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       403 ~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ...+..+.|+|... .++.++-||.|-|+.+.+..
T Consensus       296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            89999999999655 78888999999999998765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=7.1e-20  Score=175.76  Aligned_cols=338  Identities=16%  Similarity=0.255  Sum_probs=238.8

Q ss_pred             HHHHhCCCCCceeeccCCCCCCCcCCCCcCCCcccCCccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccC--
Q 012679           74 LAEVFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGS--  151 (458)
Q Consensus        74 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~--  151 (458)
                      ++..+.++...|.+..-.|+.-     ..+++  |+..+.-.|++-+. .-|....-|+-...+-.-.|+-  .-|++  
T Consensus       259 ~eall~GHeDWV~sv~W~p~~~-----~LLSA--SaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g--~lw~~n~  328 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWWHPEGL-----DLLSA--SADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWG--GLWSPNS  328 (764)
T ss_pred             hhhhhcCcccceEEEEEccchh-----hheec--ccCcceEEEecCCc-cceEEEEEEeecccccccceee--EEEcCCC
Confidence            4445557777777776666541     12222  22233333443322 2233222333333333334443  34555  


Q ss_pred             CCeEEEEcCCEEEEEE-CCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCc
Q 012679          152 SNVLAIALGSTVYLWD-ASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHR  226 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd-~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~  226 (458)
                      +-+++-+..|..++|. .+...+.+...+.+|.+.|++|+|+|.|.+|++.+.|-+-+|+-.-..    ..+..-+. |.
T Consensus       329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi-HG  407 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI-HG  407 (764)
T ss_pred             CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc-cc
Confidence            4488888999999998 334455666678899999999999999999999999999999864311    22333334 88


Q ss_pred             ccEEEEEe-C-CCeEEEEeCCCcEEEEEccCC-------------------------------------------Ce---
Q 012679          227 SRVGSLAW-N-NHILTTGGMDGLIINNDVRVR-------------------------------------------DH---  258 (458)
Q Consensus       227 ~~v~~l~~-~-~~~l~sg~~dg~i~vwd~~~~-------------------------------------------~~---  258 (458)
                      ..+.|+++ + +..+++|.....+++|+....                                           ..   
T Consensus       408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~  487 (764)
T KOG1063|consen  408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV  487 (764)
T ss_pred             ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence            89999999 5 678888888888999875310                                           00   


Q ss_pred             -----------------------------eEEEEcccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCc
Q 012679          259 -----------------------------IVETYRGHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSV  304 (458)
Q Consensus       259 -----------------------------~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~  304 (458)
                                                   .+..+.||..+|.+++.+|+++++|+++...     .|++|+..+-..   
T Consensus       488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~---  564 (764)
T KOG1063|consen  488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ---  564 (764)
T ss_pred             eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh---
Confidence                                         0233458999999999999999999998643     589999877655   


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee----EEEe-CCCCeEEEEEcCCCCeEEEEec
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL----NSVD-TGSQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~g  379 (458)
                         .+.+..|.-.|+.|+|+|++.+|++++   .|+++.+|........    ...+ +..-|....|+|++.++++  +
T Consensus       565 ---~~~L~~HsLTVT~l~FSpdg~~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT--a  636 (764)
T KOG1063|consen  565 ---VQELEGHSLTVTRLAFSPDGRYLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT--A  636 (764)
T ss_pred             ---hheecccceEEEEEEECCCCcEEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE--e
Confidence               667889999999999999988888776   8999999987543211    1122 2334889999999999888  4


Q ss_pred             CCCCcEEEEeCCCc--eeeEE--EeCCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEecC
Q 012679          380 FTQNQLTLWKYPSM--VKMAE--LSGHTSRVLFMAQSP-----DGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       380 ~~d~~i~iwd~~~~--~~~~~--~~~h~~~V~~l~~sp-----dg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ..|..|.||..+..  +.+..  ...+...|+.+++.|     .+..++.|-..|.|.+|+..
T Consensus       637 SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  637 SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            48999999999877  44433  345788999999987     23367788889999999976

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=7.4e-20  Score=161.40  Aligned_cols=274  Identities=17%  Similarity=0.309  Sum_probs=204.2

Q ss_pred             CCeEEEEcCCEEEEEECCCCC-eeeEEEe--cCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEeCCCceeeEEecCC
Q 012679          152 SNVLAIALGSTVYLWDASDGT-TSELVTV--DDENGPVTSVNWAPD----GRHIAIGLNNCQVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~-~~~~~~~--~~h~~~V~~v~~s~~----g~~la~g~~dg~v~iwd~~~~~~~~~~~~~  224 (458)
                      ..+++...++.+.+|.....- ...+..+  +.|......++|+-+    ..+||+|+.-|.|+|.|+.+++....+.+ 
T Consensus        55 ~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g-  133 (385)
T KOG1034|consen   55 PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG-  133 (385)
T ss_pred             CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec-
Confidence            567888888899999876432 2222222  246788899999863    45899999999999999999999999998 


Q ss_pred             CcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCee--EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679          225 HRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       225 ~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      |...|+.|.+.   ++++++++.|..|++|++++..++  ..-+.+|..+|.++.|+++|.+|+++|.|..|++|++...
T Consensus       134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            99999999995   579999999999999999987652  2334689999999999999999999999999999999843


Q ss_pred             CCCCcce---------------------ee-eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC-CCCCe----
Q 012679          300 SSNSVTQ---------------------WL-HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT-HTGAC----  352 (458)
Q Consensus       300 ~~~~~~~---------------------~~-~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~-~~~~~----  352 (458)
                      +.....+                     +. .+-.-|...|-|+.|--   .++++-+  -++.|.+|.. +-++.    
T Consensus       214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSks--cenaI~~w~pgkl~e~~~~v  288 (385)
T KOG1034|consen  214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKS--CENAIVCWKPGKLEESIHNV  288 (385)
T ss_pred             HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecc--cCceEEEEecchhhhhhhcc
Confidence            3211100                     01 12345778888888854   4555544  6789999987 22222    


Q ss_pred             ---------eEEEeCC-CCeE--EEEEcCCCCeEEEEecCCCCcEEEEeCCCceee--EEEeCC--CCcEEEEEEcCCCC
Q 012679          353 ---------LNSVDTG-SQVC--ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM--AELSGH--TSRVLFMAQSPDGC  416 (458)
Q Consensus       353 ---------~~~~~~~-~~v~--~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~--~~~~~h--~~~V~~l~~spdg~  416 (458)
                               +..++.. ..+.  ..+|++.++.|++  |...|.|.+||+...++.  .++..+  ...|...+||.||.
T Consensus       289 kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs  366 (385)
T KOG1034|consen  289 KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS  366 (385)
T ss_pred             CCCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence                     1222221 2333  3456777888888  879999999999876652  233222  35699999999999


Q ss_pred             EEEEEeCCCcEEEEecC
Q 012679          417 TVASAAADETLRFWNVF  433 (458)
Q Consensus       417 ~l~s~s~Dg~i~iW~~~  433 (458)
                      +|+..+.|++|.-||.-
T Consensus       367 ~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  367 ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEEeCCCcEEEEEee
Confidence            99999999999999853

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=9e-20  Score=173.19  Aligned_cols=151  Identities=21%  Similarity=0.386  Sum_probs=117.6

Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-------eEEEe-
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-------LNSVD-  357 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-------~~~~~-  357 (458)
                      +..|.|-||+++......... +..+ .....|+.+.|.|....-||+++  .||.|++|.+..+..       ...+. 
T Consensus       600 g~gG~iai~el~~PGrLPDgv-~p~l-~Ngt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~  675 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGV-MPGL-FNGTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTI  675 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCccc-cccc-ccCceeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeec
Confidence            446788888887654421111 1122 23567999999999888888877  999999999876532       22332 


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      +...|+++.|+|-...++++ ...|-+|++||+.+++....+.+|++.|..++|||||+.+++.+.||+|++|+-...++
T Consensus       676 h~eKI~slRfHPLAadvLa~-asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAV-ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             ccceEEEEEecchhhhHhhh-hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            45679999999976555544 34789999999999999999999999999999999999999999999999999887766


Q ss_pred             cccc
Q 012679          438 VISK  441 (458)
Q Consensus       438 ~~~~  441 (458)
                      ....
T Consensus       755 pv~E  758 (1012)
T KOG1445|consen  755 PVYE  758 (1012)
T ss_pred             cccc
Confidence            5543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.5e-20  Score=175.24  Aligned_cols=255  Identities=15%  Similarity=0.211  Sum_probs=195.7

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC--------ceeeEEecCCCcccEEEEEe--CCCeEEEEeCC
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA--------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD  245 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~--------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d  245 (458)
                      -+++..|.+.|+.++|.|....|++++.||.|.+|+++.        -+.+.++.+ |.++|.|++.  ++..+++|+.|
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccC
Confidence            346678889999999999999999999999999999832        246778887 9999999999  68999999999


Q ss_pred             CcEEEEEccCCC---------eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679          246 GLIINNDVRVRD---------HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS  316 (458)
Q Consensus       246 g~i~vwd~~~~~---------~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  316 (458)
                      |+|+.|++....         .+...+.||...|..+++|+....|++++.||++++|+.......     ........+
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-----~f~~~~e~g  440 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-----TFGEPKEHG  440 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-----ccCCccccC
Confidence            999999664221         345678899999999999999999999999999999997665431     111111122


Q ss_pred             ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679          317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQVCALLWNKNERELLSSHGFTQNQLTLW  388 (458)
Q Consensus       317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw  388 (458)
                      .-.++.+-.......++..  .-+.-.+.+...+..+..+..        ...+..+.++|.....++++  .++.|+++
T Consensus       441 ~Plsvd~~ss~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h--ed~~Ir~~  516 (577)
T KOG0642|consen  441 YPLSVDRTSSRPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH--EDRSIRFF  516 (577)
T ss_pred             CcceEeeccchhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc--cCCceecc
Confidence            3345555443322222211  223333444444544444432        13578899999998888854  89999999


Q ss_pred             eCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      |..++..++....|...|+++++.|+|-+|++++.|+.+++|++.....+..
T Consensus       517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence            9999999999999999999999999999999999999999999977665554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.1e-18  Score=152.79  Aligned_cols=237  Identities=21%  Similarity=0.359  Sum_probs=179.9

Q ss_pred             eeccCCCeEEEEcCCEEEEEECC--CCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC--------
Q 012679          147 LDWGSSNVLAIALGSTVYLWDAS--DGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA--------  214 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~--------  214 (458)
                      +++.+.++++++.|++|+|||..  ++..........|.+.|..|.|.+  -|+.+|+++.|+++.||.-..        
T Consensus        21 ~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~  100 (361)
T KOG2445|consen   21 FDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR  100 (361)
T ss_pred             ecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence            44566899999999999999954  466666777889999999999976  699999999999999997421        


Q ss_pred             -ceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCee-----E-------EEEcccccceEeEEEcC
Q 012679          215 -NRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHI-----V-------ETYRGHNQEVCGLKWSA  277 (458)
Q Consensus       215 -~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~-----~-------~~~~~h~~~v~~l~~sp  277 (458)
                       .....++.. ....|+.+.|.    |-.|++++.||.++||+.-....+     .       .....+.....|+.|+|
T Consensus       101 ~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~  179 (361)
T KOG2445|consen  101 RWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP  179 (361)
T ss_pred             eeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence             112334444 77889999994    678999999999999987543221     1       11224667788999998


Q ss_pred             ---CCCEEEEEECC-----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC---cEEEEeCCCCCCeEEEEE
Q 012679          278 ---SGQQLASGGND-----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS---NLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       278 ---d~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---~ll~s~~g~~d~~i~lwd  346 (458)
                         ...+||.|+.+     +.++||........  ...+..+.+|..+|+.|+|.|.-.   .++|+++  .|| |+||+
T Consensus       180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK--w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~I~~  254 (361)
T KOG2445|consen  180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK--WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VRIFK  254 (361)
T ss_pred             ccccCceEEEEcccCCccccceEEEEecCCcce--eeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EEEEE
Confidence               35678888876     58999987665421  222566779999999999999643   5788876  899 99999


Q ss_pred             CCCCC--------------------eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          347 THTGA--------------------CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       347 ~~~~~--------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      +....                    .+..+ ++.++|..+.|+-.|..|.++  +.||.|++|...
T Consensus       255 v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt--GdDG~VRLWkan  318 (361)
T KOG2445|consen  255 VKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST--GDDGCVRLWKAN  318 (361)
T ss_pred             EeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec--CCCceeeehhhh
Confidence            87311                    12222 346689999999999998885  389999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.9e-19  Score=170.21  Aligned_cols=269  Identities=18%  Similarity=0.268  Sum_probs=203.6

Q ss_pred             cceee--ccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC--EEEEEecCCeEEEEeCCCc----
Q 012679          144 LNLLD--WGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR--HIAIGLNNCQVQLWDSTAN----  215 (458)
Q Consensus       144 ~~~~~--~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~--~la~g~~dg~v~iwd~~~~----  215 (458)
                      +.+++  .++.-+++|+.||+|+||.+.+|.+.....+   .+.|.||+|+|.+.  .||++.... +.|.+..-|    
T Consensus       403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e  478 (733)
T KOG0650|consen  403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE  478 (733)
T ss_pred             EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence            44444  4456788999999999999999998555555   44799999999654  555554433 444432111    


Q ss_pred             --------------------------------e-eeEEecCCCcccEEEEEeC--CCeEEEEeCC---CcEEEEEccCCC
Q 012679          216 --------------------------------R-QLRTLRGGHRSRVGSLAWN--NHILTTGGMD---GLIINNDVRVRD  257 (458)
Q Consensus       216 --------------------------------~-~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d---g~i~vwd~~~~~  257 (458)
                                                      + -++..- .|...|..+.|+  |.+|++...+   ..|.|+++....
T Consensus       479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~  557 (733)
T KOG0650|consen  479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK  557 (733)
T ss_pred             hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence                                            0 011111 388899999995  7899987654   468899987654


Q ss_pred             eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      . ...+....+.|.++.|+|...+|++++. ..|+|||+.....      +.++......|..++.+|.|.++++.+   
T Consensus       558 s-Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel------vKkL~tg~kwiS~msihp~GDnli~gs---  626 (733)
T KOG0650|consen  558 S-QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL------VKKLLTGSKWISSMSIHPNGDNLILGS---  626 (733)
T ss_pred             c-cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH------HHHHhcCCeeeeeeeecCCCCeEEEec---
Confidence            3 2445455678999999999999999876 6899999987655      566666677899999999999988843   


Q ss_pred             CCCeEEEEECCCC-CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC---------CceeeEEEeCCCCc-
Q 012679          338 GDRCIKFWNTHTG-ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP---------SMVKMAELSGHTSR-  405 (458)
Q Consensus       338 ~d~~i~lwd~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~---------~~~~~~~~~~h~~~-  405 (458)
                      .|+.+..+|+.-. ++.+++.. ...+++++|++....+++  |+.||++.||.-.         -.-++..+.+|... 
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~  704 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN  704 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence            8999999999765 45555554 456899999999998888  6689999998632         13467788899765 


Q ss_pred             ---EEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          406 ---VLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       406 ---V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                         |....|+|...+|+++++||+|++|
T Consensus       705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  705 DLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccceEeecccCCCceEEecCCCceEEee
Confidence               9999999999999999999999999

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=8.3e-18  Score=161.15  Aligned_cols=272  Identities=11%  Similarity=0.183  Sum_probs=180.8

Q ss_pred             EEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-cee--eEEecCCCcccE
Q 012679          155 LAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA-NRQ--LRTLRGGHRSRV  229 (458)
Q Consensus       155 la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~-~~~--~~~~~~~~~~~v  229 (458)
                      ++.+.++.|++|++.+ +++..+..+. +.+....++++|++++|++++ .++.|.+|++.. ++.  +....  .....
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p   82 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSP   82 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCc
Confidence            4446789999999964 5655555554 345678899999999987765 478899999863 332  22222  33345


Q ss_pred             EEEEeC--CCeEEEEe-CCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCC
Q 012679          230 GSLAWN--NHILTTGG-MDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSN  302 (458)
Q Consensus       230 ~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~  302 (458)
                      ..++++  ++.|++++ .++.|.+|++.....   .+..+. +.....+++++|+++++++++ .++.|.+||+......
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            678885  66777665 488999999974332   122222 234467788999999886554 5699999999763321


Q ss_pred             Cc-ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--CC--eeEEEeC-------CCCeEEEEEcCC
Q 012679          303 SV-TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT--GA--CLNSVDT-------GSQVCALLWNKN  370 (458)
Q Consensus       303 ~~-~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~--~~--~~~~~~~-------~~~v~~~~~s~~  370 (458)
                      .. ........ .......++|+|++..++++..  .++.|.+|++..  ++  .+..+..       ......+.++|+
T Consensus       162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             cccCCCceecC-CCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            00 00011111 1234578999999888888765  689999999973  33  2333321       112336889999


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC---CcEEEEEEcCCCCEEEEEeC-CCcEEEEecCC
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT---SRVLFMAQSPDGCTVASAAA-DETLRFWNVFG  434 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~---~~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~~  434 (458)
                      +++++++. ..++.|.+|++.......++.++.   .....++++|||++|+++.. +++|.+|++..
T Consensus       239 g~~lyv~~-~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        239 GRHLYACD-RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCEEEEec-CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            99999863 357899999986543222222221   24567899999999998775 89999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=153.61  Aligned_cols=245  Identities=20%  Similarity=0.345  Sum_probs=183.2

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCc------------eeeEEecCCCcccEEEEEe---------CCCeEEEEe
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN------------RQLRTLRGGHRSRVGSLAW---------NNHILTTGG  243 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~------------~~~~~~~~~~~~~v~~l~~---------~~~~l~sg~  243 (458)
                      ....+.|+|||..|++-+.|..+.+|++...            +....++-.....|...+|         +..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            4567899999999999999999999987421            1112222224567778888         247899999


Q ss_pred             CCCcEEEEEccCCCeeEEEEc--ccccc---eEeEEEcCCCCEEEEEECCCcEEEEeCCC-CCCCCcc-eeeeeeccccc
Q 012679          244 MDGLIINNDVRVRDHIVETYR--GHNQE---VCGLKWSASGQQLASGGNDNLLHIWDRSM-ASSNSVT-QWLHRLEEHTS  316 (458)
Q Consensus       244 ~dg~i~vwd~~~~~~~~~~~~--~h~~~---v~~l~~spd~~~l~sg~~dg~i~iwd~~~-~~~~~~~-~~~~~~~~h~~  316 (458)
                      ++.-|++||.-++.. ...+.  .|..+   ..+++|+|||.+|++|- ...|+++|+.. +..-... ...+.-.+..+
T Consensus       131 r~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            999999999987763 23332  34333   45799999999998875 47999999843 3321111 00111223467


Q ss_pred             ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ce
Q 012679          317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MV  394 (458)
Q Consensus       317 ~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~  394 (458)
                      .+.+++|+|....+++.++  ....+-|++-..+.++..+. +++.|+.++|.++|+.|++.. ..+..|..||++. ..
T Consensus       209 iisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-Rk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-RKDDKILCWDIRYSRD  285 (406)
T ss_pred             eeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-cCCCeEEEEeehhccc
Confidence            8899999999888999987  88888888888888887774 567899999999999999853 3577899999985 55


Q ss_pred             eeEEEeCCCC-c--EEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          395 KMAELSGHTS-R--VLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       395 ~~~~~~~h~~-~--V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ++..+..|.+ .  -......|+|++|++|+.||.|++||+..
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            6777877765 2  22356678999999999999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=2.4e-19  Score=170.66  Aligned_cols=247  Identities=19%  Similarity=0.326  Sum_probs=178.7

Q ss_pred             EEEEcC---CCCEEEEEecCCeEEEEeCCCcee------eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679          188 SVNWAP---DGRHIAIGLNNCQVQLWDSTANRQ------LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       188 ~v~~s~---~g~~la~g~~dg~v~iwd~~~~~~------~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~  256 (458)
                      +..|++   ....||++..||.|.++|......      +..... |...|..+.|-  ...|++++.|.++++||+.+.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccc-ccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            356665   456899999999999999765432      233334 99999999994  478999999999999999977


Q ss_pred             CeeEEE--EcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCC-----------------cce----eeeeec
Q 012679          257 DHIVET--YRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNS-----------------VTQ----WLHRLE  312 (458)
Q Consensus       257 ~~~~~~--~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~-----------------~~~----~~~~~~  312 (458)
                      .. +..  +.+|.+.|.+++|.|. ...|++|+.||.|.|||++......                 ..+    .+..-.
T Consensus       133 ~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  133 RL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ee-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            64 333  7899999999999995 5678999999999999987654110                 000    112223


Q ss_pred             ccccceeE---EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE--------eC----CCCeEEEEEcCCCCeEEEE
Q 012679          313 EHTSAVKA---IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--------DT----GSQVCALLWNKNERELLSS  377 (458)
Q Consensus       313 ~h~~~v~~---l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~--------~~----~~~v~~~~~s~~~~~l~~~  377 (458)
                      .+...|.+   +.+..| +..||++++ .|+.|+|||+++.......        ..    ...+.++.....|.+|++.
T Consensus       212 A~s~ti~ssvTvv~fkD-e~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As  289 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKD-ESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS  289 (720)
T ss_pred             cccCceeeeeEEEEEec-cceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence            34444444   444444 455666543 7999999999986543322        11    2347888899999999996


Q ss_pred             ecCCCCcEEEEeCCCc--eeeEEEeCCCCcE--EEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          378 HGFTQNQLTLWKYPSM--VKMAELSGHTSRV--LFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~--~~~~~~~~h~~~V--~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +  .|+.|++|++.+.  .++..+.++...-  ..-..+||+.+|++|+.|+..++|.+........
T Consensus       290 C--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  290 C--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             e--cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            6  7999999999864  3555666554321  2235689999999999999999999987765443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=1.1e-18  Score=157.38  Aligned_cols=206  Identities=19%  Similarity=0.369  Sum_probs=167.7

Q ss_pred             EecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCce-------eeEEecCCCcccEEEEEeCC---CeEEEEeCCC
Q 012679          178 TVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANR-------QLRTLRGGHRSRVGSLAWNN---HILTTGGMDG  246 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~-------~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg  246 (458)
                      .+.+|.++|..++|+| +...||+|+.|.+|.||++..+.       .+..+.+ |..+|.-++|++   +.|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCc
Confidence            3568999999999999 67789999999999999986553       3555666 999999999974   8999999999


Q ss_pred             cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc-eeEEEecC
Q 012679          247 LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA-VKAIAWCP  325 (458)
Q Consensus       247 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p  325 (458)
                      +|.+|++.++..++. +. |...|.++.|+.||.+|++.+.|..|+|||.+.+..      +..-.+|.+. -..+.|-.
T Consensus       155 ~v~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~------v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  155 TVSIWNVGTGEALIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV------VSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             eEEEEeccCCceeee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE------eeecccccCCCcceeEEec
Confidence            999999999987544 43 999999999999999999999999999999999876      5555566553 33455666


Q ss_pred             CCCcEEEEeC-CCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679          326 FQSNLLATGG-GGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV  394 (458)
Q Consensus       326 ~~~~ll~s~~-g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~  394 (458)
                      ++. ++.+|. ...++.+-+||..+-   -.+..+++.+.|.---|.++.+.++.+ |-.|+.|+-|.+....
T Consensus       227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  227 SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence            555 666653 346789999987653   356677788888888889998888776 7789999999987655

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=5.8e-17  Score=159.09  Aligned_cols=278  Identities=31%  Similarity=0.558  Sum_probs=216.2

Q ss_pred             ccceeeccCCC--eEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWGSSN--VLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~~~--~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      .+..+.|++..  +++++. ++.+++|+...+..  +..+.+|...|.+++|+|++. .+++++.|+.|++||...+..+
T Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~  234 (466)
T COG2319         157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL  234 (466)
T ss_pred             cEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence            45578887744  444443 99999999988655  666777999999999999998 5555599999999998877777


Q ss_pred             E-EecCCCcccE-EEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          219 R-TLRGGHRSRV-GSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       219 ~-~~~~~~~~~v-~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      . .+.. |...+ ..+..++..+++++.|+.+++|+++........+.+|...|.++.|+|++..+++++.|+.+.+||.
T Consensus       235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         235 RSTLSG-HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             eeecCC-CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence            7 4665 77763 3333356788899999999999998766533444788999999999999999988999999999988


Q ss_pred             CCCCCCCcceeeeee--cccccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679          297 SMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE  373 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  373 (458)
                      .....      ....  ..|...+..+.| +.. ..++..+.  .|+.+.+|+...............+..+.+.+ . .
T Consensus       314 ~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  382 (466)
T COG2319         314 ETGKL------LSSLTLKGHEGPVSSLSF-SPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-G  382 (466)
T ss_pred             CCCce------EEEeeecccCCceEEEEE-CCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-C
Confidence            77665      3333  367778999999 533 34444433  77999999999888444444444488999999 6 5


Q ss_pred             EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      .....+..++.+.+|+............+...+....+++++..+++++.++.+++|++..
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            5554356889999999999888877765547889999999999999999999999999987

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=2.8e-17  Score=161.18  Aligned_cols=273  Identities=16%  Similarity=0.229  Sum_probs=220.5

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR  226 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~  226 (458)
                      .+-....+++.+-|.+..+||.+.-..  +..-+.+...|+|++-..+  ++.+++.. .|.+|.  .++.++.+...|.
T Consensus        42 ~~~~~~~~vtt~vgksfqvYd~~kl~l--l~vs~~lp~~I~alas~~~--~vy~A~g~-~i~~~~--rgk~i~~~~~~~~  114 (910)
T KOG1539|consen   42 VALGSTFYVTTCVGKSFQVYDVNKLNL--LFVSKPLPDKITALASDKD--YVYVASGN-KIYAYA--RGKHIRHTTLLHG  114 (910)
T ss_pred             eecCceEEEEEecCceEEEEeccceEE--EEecCCCCCceEEEEecCc--eEEEecCc-EEEEEE--ccceEEEEecccc
Confidence            333446688899999999999886554  5555677889999986544  55555444 677775  5655555554588


Q ss_pred             ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCee----EEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCC
Q 012679          227 SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI----VETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       227 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      +.|.-+..-|..++++..++.+.+|+....+..    ...++.....|+++. +|.  -+.++.|+.+|.+.+|++++++
T Consensus       115 a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K  193 (910)
T KOG1539|consen  115 AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK  193 (910)
T ss_pred             ceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCc
Confidence            899999988999999999999999998874211    122233333477664 563  4678999999999999999998


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEec
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g  379 (458)
                      .      ++++.++...|+++.-+| --.++|.|.  .+|+|.++|++.++.+.++++. ++|+++.|..||..++++ |
T Consensus       194 ~------v~~f~~~~s~IT~ieqsP-aLDVVaiG~--~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las-~  263 (910)
T KOG1539|consen  194 V------VYTFQEFFSRITAIEQSP-ALDVVAIGL--ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLAS-G  263 (910)
T ss_pred             E------EEEecccccceeEeccCC-cceEEEEec--cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEe-c
Confidence            8      999999999999999998 466777766  9999999999999999999996 999999999999999887 5


Q ss_pred             CCCCcEEEEeCCCceeeEEEe-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          380 FTQNQLTLWKYPSMVKMAELS-GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       380 ~~d~~i~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      ...|.+.+||+...+.+..+. .|.+.|..+.|.|....+++++.|..+++|=...++-
T Consensus       264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg  322 (910)
T KOG1539|consen  264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG  322 (910)
T ss_pred             cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence            688999999999988887776 7999999999999999999999999999997764443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.7e-18  Score=154.75  Aligned_cols=248  Identities=15%  Similarity=0.279  Sum_probs=187.4

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC------CceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEE
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST------ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLII  249 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~------~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~  249 (458)
                      .+.+|.+.|.++.|+.++++||+|+.|..++||.+.      +.+.+......|...|.||+|+  +..+++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            456899999999999999999999999999999975      3466666666677999999996  68899999999999


Q ss_pred             EEEccCCCeeEEEE--cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          250 NNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       250 vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      ..|+++.+.+ ..+  ....+.|..+..+|-.+.|++.+.++.|.+||.+.......   +..+.........+.|+|..
T Consensus       131 ~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  131 KHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc---eeeecCCCccceeeeecCCC
Confidence            9999988753 222  23345899999999999999999999999999987653222   22233345567888999999


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCe-e-------------------------------------------------EEEe
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGAC-L-------------------------------------------------NSVD  357 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~-~-------------------------------------------------~~~~  357 (458)
                      +.|+++.+  ..+-+-+||.+..+. +                                                 ..++
T Consensus       207 P~Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  207 PALILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             ceeEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            99999876  777788898764320 0                                                 0000


Q ss_pred             CCC-------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-----------------------eeeEEEeCCCCcEE
Q 012679          358 TGS-------QVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-----------------------VKMAELSGHTSRVL  407 (458)
Q Consensus       358 ~~~-------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-----------------------~~~~~~~~h~~~V~  407 (458)
                      +..       .+.+++|..+.. +++  |..+-.|++|.++..                       ..+..++||.+.+.
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N  361 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN  361 (609)
T ss_pred             CCCCcceeeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence            000       122334433333 333  778889999998531                       12446789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      .+.|+|...+|++.+....++||.-..
T Consensus       362 QVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  362 QVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             ceeecCCcceEeccchhhheecccccc
Confidence            999999999999999999999997543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=2.2e-18  Score=156.16  Aligned_cols=281  Identities=18%  Similarity=0.248  Sum_probs=196.1

Q ss_pred             CCeEEEEcCCEEEEEECCCC-------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--------C--
Q 012679          152 SNVLAIALGSTVYLWDASDG-------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--------A--  214 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~-------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--------~--  214 (458)
                      +.+++++.|..|++|-+..+       ++.-+..+..|...|++|.|+|+|..||+|+.+|.|.+|...        +  
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA  106 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence            37899999999999987643       344466788999999999999999999999999999999755        2  


Q ss_pred             ------ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE
Q 012679          215 ------NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       215 ------~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~  286 (458)
                            ....+.+.+ |...|..++|  ++.++++|+.|..+++||+..+.. ...+.+|...|..++|.|-++++++-+
T Consensus       107 ~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl~qyv~s~s  184 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPLNQYVASKS  184 (434)
T ss_pred             hhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchhhhhhhhhc
Confidence                  112333444 9999999999  578999999999999999998774 788889999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCcce---------------eeeeec--ccccceeEEEecCCCCcEEEEeCCC-------CCCeE
Q 012679          287 NDNLLHIWDRSMASSNSVTQ---------------WLHRLE--EHTSAVKAIAWCPFQSNLLATGGGG-------GDRCI  342 (458)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~---------------~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~-------~d~~i  342 (458)
                      .|...+++.+..........               ...-+.  .-..-...++|+|+|..++ +..|.       .-++.
T Consensus       185 ~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv-tPag~~~~g~~~~~n~t  263 (434)
T KOG1009|consen  185 SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV-TPAGLFKVGGGVFRNTS  263 (434)
T ss_pred             cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE-cccceeeeCCceeecee
Confidence            99877777765443311100               000000  0112345688999765544 33221       11233


Q ss_pred             EEEECCC-CCeeEEEeC-CCCeEEEEEcC-----------------CCCeEEEEecCCCCcEEEEeCCCceeeEEEe-CC
Q 012679          343 KFWNTHT-GACLNSVDT-GSQVCALLWNK-----------------NERELLSSHGFTQNQLTLWKYPSMVKMAELS-GH  402 (458)
Q Consensus       343 ~lwd~~~-~~~~~~~~~-~~~v~~~~~s~-----------------~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~h  402 (458)
                      ++++-.. .++...+.. ......+.++|                 ..+.+++..  ..+.|.|||..+..++..+. -|
T Consensus       264 Yvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA--t~~svyvydtq~~~P~~~v~nih  341 (434)
T KOG1009|consen  264 YVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA--TKNSVYVYDTQTLEPLAVVDNIH  341 (434)
T ss_pred             EeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe--ecceEEEeccccccceEEEeeee
Confidence            4443321 112222222 12223333332                 122233322  47899999999988887764 47


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      -..|+.++|++||.+|+..+.||...+-.+...+.
T Consensus       342 y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  342 YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            88999999999999999999999887776655443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=5.2e-18  Score=147.49  Aligned_cols=282  Identities=16%  Similarity=0.281  Sum_probs=199.9

Q ss_pred             CCCccccceeecc----CC-CeEEEEc----CCEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcCCCC-----EEEEE
Q 012679          138 LVDDYYLNLLDWG----SS-NVLAIAL----GSTVYLWDA--SDGTTSELVTVDDENGPVTSVNWAPDGR-----HIAIG  201 (458)
Q Consensus       138 ~~~d~~~~~~~~~----~~-~~la~~~----d~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~~g~-----~la~g  201 (458)
                      ....+.+-.++|+    .. +++.++.    .+.|.|-.+  ++++.....+ -.|.-+++.+.|.|+..     +||+.
T Consensus        41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs  119 (364)
T KOG0290|consen   41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATS  119 (364)
T ss_pred             ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcc
Confidence            3445667778887    33 3444443    356666544  4455433333 25888999999999753     45544


Q ss_pred             ecCCeEEEEeCCCceeeE----Ee----cCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCC--CeeEEEEccccc
Q 012679          202 LNNCQVQLWDSTANRQLR----TL----RGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVR--DHIVETYRGHNQ  268 (458)
Q Consensus       202 ~~dg~v~iwd~~~~~~~~----~~----~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~~h~~  268 (458)
                       .| .+++|.+...+...    .+    ...+.++++++.|+   +++|.+.+-|.+..|||++++  ..+...+.+|..
T Consensus       120 -~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  120 -SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             -cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence             34 79999887422111    11    12367899999995   799999999999999999986  335678889999


Q ss_pred             ceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          269 EVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       269 ~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      +|..++|...+ +.||+.|.||.|++||++.......   +..-.....+...++|++...+++|+-. .....|.+.|+
T Consensus       198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI---IYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDi  273 (364)
T KOG0290|consen  198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI---IYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDI  273 (364)
T ss_pred             ceeEEEeccCccceEEEecCCCcEEEEEecccccceE---EecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEe
Confidence            99999999854 4789999999999999998765311   2222222567889999999999988864 24467999999


Q ss_pred             CCC-CeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee------eEEEeCCCCcEEEEEEcC-CCCEE
Q 012679          348 HTG-ACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK------MAELSGHTSRVLFMAQSP-DGCTV  418 (458)
Q Consensus       348 ~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~------~~~~~~h~~~V~~l~~sp-dg~~l  418 (458)
                      +.. .++..+ .+.+.|+.++|.|....-++++| +|.+..|||+.+.-.      +..+. -.+.|..+.|++ .+.+|
T Consensus       274 R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  274 RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             cCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence            874 455555 45788999999999887777755 899999999976433      22222 456799999996 56677


Q ss_pred             EEEeCCCcEEE
Q 012679          419 ASAAADETLRF  429 (458)
Q Consensus       419 ~s~s~Dg~i~i  429 (458)
                      +.+.. ..+.+
T Consensus       352 ai~~~-kklei  361 (364)
T KOG0290|consen  352 AICFG-KKLEI  361 (364)
T ss_pred             EEEec-CeeeE
Confidence            76543 34433

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7e-19  Score=154.45  Aligned_cols=195  Identities=15%  Similarity=0.261  Sum_probs=158.3

Q ss_pred             EEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679          229 VGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       229 v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~  306 (458)
                      ..|+.|+  |.+|++|+.+|.|.+||+.+.. +.+.+.+|..+|++++||+||+.|++++.|..|.+||+..+..     
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-----   99 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-----   99 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-----
Confidence            6788885  8999999999999999998876 4678889999999999999999999999999999999999886     


Q ss_pred             eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-EEEeCCC----CeEEEEEcCCCCeEEEEecCC
Q 012679          307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-NSVDTGS----QVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-~~~~~~~----~v~~~~~s~~~~~l~~~~g~~  381 (458)
                       ++.+. ..++|....|+|...+.+++.-  .+..-.+-++..++.. ...+..+    ...+..|.+.|+++++  |..
T Consensus       100 -l~rir-f~spv~~~q~hp~k~n~~va~~--~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit--Gts  173 (405)
T KOG1273|consen  100 -LKRIR-FDSPVWGAQWHPRKRNKCVATI--MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT--GTS  173 (405)
T ss_pred             -eeEEE-ccCccceeeeccccCCeEEEEE--ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE--ecC
Confidence             55553 4789999999998777665543  4444555555542211 1111111    1233469999999999  778


Q ss_pred             CCcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          382 QNQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       382 d~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .|.+.++|..+.+.++.++-.+ ..|.++.++..|++|+.-+.|..||.|++..-
T Consensus       174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence            9999999999999999988666 78999999999999999999999999998743

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=2e-16  Score=155.27  Aligned_cols=279  Identities=27%  Similarity=0.524  Sum_probs=212.1

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEEEEEE-cCCCC-EEEEEec-CCeEEEEeCCC-c
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVTSVNW-APDGR-HIAIGLN-NCQVQLWDSTA-N  215 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~-s~~g~-~la~g~~-dg~v~iwd~~~-~  215 (458)
                      .+..+.+..  ..++.++.++.+.+|+...+. .....+..+. ..+..+.+ ++++. +++..+. |+.+.+||... .
T Consensus        67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  145 (466)
T COG2319          67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG  145 (466)
T ss_pred             eEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence            344455544  456666679999999998875 1244444433 36777777 88887 5555444 99999999998 6


Q ss_pred             eeeEEecCCCcccEEEEEeC--CCeEEEEeC-CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcE
Q 012679          216 RQLRTLRGGHRSRVGSLAWN--NHILTTGGM-DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLL  291 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i  291 (458)
                      .....+.. |...|..++|.  +..+++++. ++.+.+|++.... .+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus       146 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i  223 (466)
T COG2319         146 KLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI  223 (466)
T ss_pred             eEEEEEec-CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence            77777776 99999999994  567888875 9999999998744 4677778999999999999998 55666999999


Q ss_pred             EEEeCCCCCCCCcceeee-eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEE-eCCCCeEEEEEc
Q 012679          292 HIWDRSMASSNSVTQWLH-RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSV-DTGSQVCALLWN  368 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~-~~~~~v~~~~~s  368 (458)
                      ++||...+..      .. .+..|...+ ...|+|++ .++++++  .|+.+++|+...... +..+ .+...+.++.|.
T Consensus       224 ~~wd~~~~~~------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  293 (466)
T COG2319         224 RLWDLSTGKL------LRSTLSGHSDSV-VSSFSPDG-SLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS  293 (466)
T ss_pred             EEEECCCCcE------EeeecCCCCcce-eEeECCCC-CEEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence            9998774433      44 577787775 44899987 5555655  999999999997765 4444 346789999999


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCC
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASA-AADETLRFWNVFGAP  436 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iW~~~~~~  436 (458)
                      |++..+++ .+ .++.+.+|+..+........  .|...+..+.+.+++..++.+ ..|+.+.+|++....
T Consensus       294 ~~~~~~~~-~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         294 PDGKLLAS-GS-SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCCEEEE-ee-CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            98888888 34 55889999998888777665  888889999994343566656 688999999998776

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=3.7e-18  Score=154.12  Aligned_cols=201  Identities=21%  Similarity=0.437  Sum_probs=161.9

Q ss_pred             CCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC------eeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEE
Q 012679          223 GGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD------HIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLH  292 (458)
Q Consensus       223 ~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~  292 (458)
                      .+|.++|..++|+   .+.|++|+.|.+|.||++..+.      ..+..+.+|...|--++|+|. .+.|++++.|++|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            3599999999994   6899999999999999987543      346788999999999999994 67889999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNKN  370 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~~  370 (458)
                      +||+.++..      +.++. |..-|.++.|+-+|..+..++   .|+.|++||.++++.+..-..  +.......|-.+
T Consensus       158 iWnv~tgea------li~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  158 IWNVGTGEA------LITLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             EEeccCCce------eeecC-CCCeEEEEEeccCCceeeeec---ccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence            999999987      66666 999999999999766555544   899999999999999887633  345667788889


Q ss_pred             CCeEEEEecC---CCCcEEEEeCCCcee---eEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 012679          371 ERELLSSHGF---TQNQLTLWKYPSMVK---MAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFGAP  436 (458)
Q Consensus       371 ~~~l~~~~g~---~d~~i~iwd~~~~~~---~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~  436 (458)
                      +. ++++ |+   ++.++.+||....+.   +.++. ..+.|.-=-|.+|...|..+| .|+.||.|.+.+..
T Consensus       228 g~-i~tT-Gfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  228 GK-IFTT-GFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             Cc-eeee-ccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            98 4443 65   367999999876553   33443 334566667888888886666 69999999998766

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=8e-18  Score=148.33  Aligned_cols=270  Identities=17%  Similarity=0.272  Sum_probs=202.2

Q ss_pred             ccceeeccCC--CeEEEEcCCEEEEEECCCC----C--------eeeEEEecCCCCCEEEEEEc-------CCCCEEEEE
Q 012679          143 YLNLLDWGSS--NVLAIALGSTVYLWDASDG----T--------TSELVTVDDENGPVTSVNWA-------PDGRHIAIG  201 (458)
Q Consensus       143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~----~--------~~~~~~~~~h~~~V~~v~~s-------~~g~~la~g  201 (458)
                      ++..+.|+|+  -+++-+.|+.+.+|++...    +        ......+. ....|...+|-       |+..++|+.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeec
Confidence            4556778884  4889999999999997521    0        11122222 24568888886       577899999


Q ss_pred             ecCCeEEEEeCCCceeeEEecC-CCcc---cEEEEEe--CCCeEEEEeCCCcEEEEEcc-CCCe-eEEEE-----ccccc
Q 012679          202 LNNCQVQLWDSTANRQLRTLRG-GHRS---RVGSLAW--NNHILTTGGMDGLIINNDVR-VRDH-IVETY-----RGHNQ  268 (458)
Q Consensus       202 ~~dg~v~iwd~~~~~~~~~~~~-~~~~---~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~-~~~~~-----~~h~~  268 (458)
                      +.+.-|++||.-+|+....+.. .|..   ...+++|  +|..|++|. ...|+++|+. .+.. .+...     .+..+
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            9999999999999998877663 1333   3457888  467777765 5689999994 3321 11111     23467


Q ss_pred             ceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          269 EVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       269 ~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      -|.+++|+| +.+.++.|+....+-||.-.....      +..+.+|.+.|+.+.|+++|+.++.-+  ..|-.|..||+
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p------l~llggh~gGvThL~~~edGn~lfsGa--Rk~dkIl~WDi  280 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP------LQLLGGHGGGVTHLQWCEDGNKLFSGA--RKDDKILCWDI  280 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCc------eeeecccCCCeeeEEeccCcCeecccc--cCCCeEEEEee
Confidence            789999999 556899999999988888766665      788889999999999999988776533  37889999999


Q ss_pred             CCC-CeeEEEeC----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679          348 HTG-ACLNSVDT----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       348 ~~~-~~~~~~~~----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~  421 (458)
                      +.. .++..+..    ..+-.-+...|+++.|++  |..+|.|++||+.. +..+..+..|...|+.++++|--.+++|+
T Consensus       281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             hhccchhhhhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence            864 34444422    234445666788999888  88999999999998 67788888899999999999998888888


Q ss_pred             eCC
Q 012679          422 AAD  424 (458)
Q Consensus       422 s~D  424 (458)
                      +..
T Consensus       359 sGq  361 (406)
T KOG2919|consen  359 SGQ  361 (406)
T ss_pred             cCc
Confidence            765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.4e-18  Score=150.32  Aligned_cols=207  Identities=21%  Similarity=0.283  Sum_probs=153.7

Q ss_pred             EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe----eEEEEcccccceEeEEEcCCCCEEE-EEECCCcEE
Q 012679          220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH----IVETYRGHNQEVCGLKWSASGQQLA-SGGNDNLLH  292 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~i~  292 (458)
                      .+++ |...|++++|  +|+.|++++.|+.|++|+++.-..    .++.- -.-+..+.+.|.||-+-++ ++-+.+.++
T Consensus        81 ~LKg-H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   81 VLKG-HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhc-cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            3445 9999999999  689999999999999999975321    11111 1123467889999987654 445667899


Q ss_pred             EEeCCCCCCCCcc---ee---eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEE
Q 012679          293 IWDRSMASSNSVT---QW---LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCAL  365 (458)
Q Consensus       293 iwd~~~~~~~~~~---~~---~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~  365 (458)
                      +|-+...+.....   ..   +.--+.|...+..+-... +..++++++  .|..|.+|+++ |+.+..+++. ......
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEec--CCCcEEEEecC-Cceeeeeccccccccce
Confidence            9986544321111   11   111234666666666655 566777776  89999999998 9999999875 456778


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCC--------CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYP--------SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~--------~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +.+|+|++++++ |+ .-.|++|..-        .-..+.+++||...|+.++||++...++|.+.||+++|||+.-
T Consensus       235 avSP~GRFia~~-gF-TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  235 AVSPDGRFIAVS-GF-TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eeCCCCcEEEEe-cC-CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            899999999986 43 5579999852        2245678899999999999999999999999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=7.1e-18  Score=146.50  Aligned_cols=249  Identities=19%  Similarity=0.309  Sum_probs=177.1

Q ss_pred             EEEEEECCCCC-------eeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-eEEecC----CCccc
Q 012679          162 TVYLWDASDGT-------TSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-LRTLRG----GHRSR  228 (458)
Q Consensus       162 ~v~iwd~~~~~-------~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-~~~~~~----~~~~~  228 (458)
                      .+.||.+....       ++.+..+. .+-+.|.||.|.|++..+|+-. |..|.+|++..+.. +..+..    .+...
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~  172 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS  172 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence            56799876432       22344444 3456899999999999988776 77999999987765 444332    25566


Q ss_pred             EEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEEEEeCCCCCCCC
Q 012679          229 VGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLHIWDRSMASSNS  303 (458)
Q Consensus       229 v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~iwd~~~~~~~~  303 (458)
                      .++-+|+    ++.+ ....|+++..||+++..+....-.+|...|..+.|+|+.+ +|++|+.||.|+|||.+..+.+ 
T Consensus       173 ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-  250 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-  250 (370)
T ss_pred             ecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-
Confidence            7777884    3444 4456899999999988776666678999999999999866 5789999999999999987663 


Q ss_pred             cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                          ++.+.+|...|.++.|+|....|+.+++  .|..|.+|....-.....+.         +..+....-   + .+.
T Consensus       251 ----v~el~~HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~---------~~~dese~e---~-~ds  311 (370)
T KOG1007|consen  251 ----VQELPGHSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCASSVSSEQQIE---------FEDDESESE---D-EDS  311 (370)
T ss_pred             ----ccccCCCceEEEEEEecCccceEEEecC--CCceeEEEeccccccccccc---------cccccccCc---c-hhh
Confidence                8889999999999999999999999987  99999999876533222221         111100000   0 000


Q ss_pred             cEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 012679          384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~  433 (458)
                      .=++ +.-....+.++..|.+.|.+++||. |.=.+|+-+.||.+.|=++.
T Consensus       312 eer~-kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  312 EERV-KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             HHhc-ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            0000 0111123456778999999999997 44567888999999887663

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=2.1e-18  Score=147.95  Aligned_cols=293  Identities=16%  Similarity=0.217  Sum_probs=198.5

Q ss_pred             CCCCCceeeeCCCCCCccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEe
Q 012679          125 IPQSSERTLDAPDLVDDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGL  202 (458)
Q Consensus       125 i~~~~~~~l~~~~~~~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~  202 (458)
                      +|..|..+|. |...   .++++-+.. ++++++..-|.|.+|++.+...  +..+. .|...|+.+.-.|+ ..|.+-+
T Consensus         2 ~pPdP~fvLR-p~~~---~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p~-d~l~tqg   74 (323)
T KOG0322|consen    2 VPPDPFFVLR-PHSS---SVTSVLFQANERLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIPN-DSLDTQG   74 (323)
T ss_pred             CCCCCeeEec-cccc---hheehhhccchhhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecCC-cchhhcC
Confidence            4567777777 3322   355555544 6799999999999999998776  34444 45778999998887 4577888


Q ss_pred             cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC-cEEEEEccC---------CCe-eEEEE----cccc
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG-LIINNDVRV---------RDH-IVETY----RGHN  267 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg-~i~vwd~~~---------~~~-~~~~~----~~h~  267 (458)
                      .|+.+.+|++..+..+..    |.-.+.++.|-..-+...+... ....|+-+.         +.. .+...    .+..
T Consensus        75 Rd~~L~lw~ia~s~~i~i----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl  150 (323)
T KOG0322|consen   75 RDPLLILWTIAYSAFISI----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL  150 (323)
T ss_pred             CCceEEEEEccCcceEEE----eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence            999999999987554332    4444555555322222222211 111111111         111 01111    1334


Q ss_pred             cceEeEEEcC-CCC--EEEEEECCCcEEEEeCCCCCCC----CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679          268 QEVCGLKWSA-SGQ--QLASGGNDNLLHIWDRSMASSN----SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR  340 (458)
Q Consensus       268 ~~v~~l~~sp-d~~--~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~  340 (458)
                      +.+.+..|.. ++.  +|++|-++|.+.+||+..+...    ...+.......|..+|.++.+.+....- ++|+  .+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isgg--a~d  227 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISGG--ADD  227 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCCC--ccc
Confidence            5677776543 233  4577889999999999986321    1111134456789999999998743333 3333  777


Q ss_pred             eEEEEECCCC--Cee--EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679          341 CIKFWNTHTG--ACL--NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       341 ~i~lwd~~~~--~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      .+..|++...  .+.  ..+.. +..+..+.+.||++.++++.  -|+.|+||+.+++.+++.++.|.+.|.+++|+|+.
T Consensus       228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC
Confidence            8888887643  221  22222 34588889999999999863  89999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecC
Q 012679          416 CTVASAAADETLRFWNVF  433 (458)
Q Consensus       416 ~~l~s~s~Dg~i~iW~~~  433 (458)
                      ..+|+++.|++|-+|++.
T Consensus       306 ~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  306 ELMAAASKDARISLWKLY  323 (323)
T ss_pred             chhhhccCCceEEeeecC
Confidence            999999999999999973

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=8.9e-18  Score=146.04  Aligned_cols=234  Identities=21%  Similarity=0.357  Sum_probs=177.5

Q ss_pred             CCCccccceeeccCCC-----eEEEEcCCEEEEEECCC--CCeeeEEEe-----cCCCCCEEEEEEcC-CCCEEEEEecC
Q 012679          138 LVDDYYLNLLDWGSSN-----VLAIALGSTVYLWDASD--GTTSELVTV-----DDENGPVTSVNWAP-DGRHIAIGLNN  204 (458)
Q Consensus       138 ~~~d~~~~~~~~~~~~-----~la~~~d~~v~iwd~~~--~~~~~~~~~-----~~h~~~V~~v~~s~-~g~~la~g~~d  204 (458)
                      +...|..+.+-|.+..     -+.++.+..+++|.+..  ++......+     ..+..++++..|+. |-++|.+.+-|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            3445566777776633     24455667999999873  333222222     24567899999997 78899999999


Q ss_pred             CeEEEEeCCCcee--eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEccc--ccceEeEEEcC
Q 012679          205 CQVQLWDSTANRQ--LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGH--NQEVCGLKWSA  277 (458)
Q Consensus       205 g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~l~~sp  277 (458)
                      -+..|||++++..  +++-...|...|..++|.   -..+++.+.||.++++|++..++..-.+...  ..+...++|++
T Consensus       173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk  252 (364)
T KOG0290|consen  173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK  252 (364)
T ss_pred             CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence            9999999999733  344333499999999994   3899999999999999999887754445432  45778899988


Q ss_pred             -CCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----
Q 012679          278 -SGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----  351 (458)
Q Consensus       278 -d~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----  351 (458)
                       |-+++|+-.. ...|.|.|++.+..+     +..+.+|.+.|.+++|.|.....++++|  .|....+||+...-    
T Consensus       253 qDpnymATf~~dS~~V~iLDiR~P~tp-----va~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~  325 (364)
T KOG0290|consen  253 QDPNYMATFAMDSNKVVILDIRVPCTP-----VARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENG  325 (364)
T ss_pred             CCchHHhhhhcCCceEEEEEecCCCcc-----eehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCC
Confidence             5567776554 457999999987653     7889999999999999999999999998  99999999997632    


Q ss_pred             --eeEEEeCCCCeEEEEEcCC-CCeEEEEe
Q 012679          352 --CLNSVDTGSQVCALLWNKN-ERELLSSH  378 (458)
Q Consensus       352 --~~~~~~~~~~v~~~~~s~~-~~~l~~~~  378 (458)
                        ++..+..++.|+.+.|++. ...++++.
T Consensus       326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  326 EDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             CCchhhhhccceeeeeeecccCCCEEEEEe
Confidence              3444556788999999964 45555543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=4.1e-18  Score=147.95  Aligned_cols=202  Identities=26%  Similarity=0.434  Sum_probs=164.5

Q ss_pred             ccceeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEe-----cCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC
Q 012679          143 YLNLLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTV-----DDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       143 ~~~~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~-----~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~  214 (458)
                      .++|+.|.|+. -++.-.++.|.+|+++.+... ...+     .++....++-+|+|  +|+.+++. .|++++.||+++
T Consensus       125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT  202 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT  202 (370)
T ss_pred             ceeeEEEcCCCCeeEEeccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence            58899999843 444445999999999876541 1111     13466788999999  78887765 577999999999


Q ss_pred             ceeeEEecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCc
Q 012679          215 NRQLRTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNL  290 (458)
Q Consensus       215 ~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~  290 (458)
                      .++...+...|...|..+.||+   .+|++|+.||.|++||.+....++..+.+|...|.++.|+| ..+++++||.|..
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            9999999988999999999985   68999999999999999998888999999999999999999 4677899999999


Q ss_pred             EEEEeCCCCCCCC-----------------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          291 LHIWDRSMASSNS-----------------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       291 i~iwd~~~~~~~~-----------------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      |.+|....-....                       ....+.++..|...|.+++|+.-.+.++|+-+  .||.+.|=.+
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V  360 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSV  360 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecC
Confidence            9999865433110                       01124578889999999999999999999988  9999887655


Q ss_pred             C
Q 012679          348 H  348 (458)
Q Consensus       348 ~  348 (458)
                      .
T Consensus       361 ~  361 (370)
T KOG1007|consen  361 P  361 (370)
T ss_pred             C
Confidence            4

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=4.3e-17  Score=163.35  Aligned_cols=279  Identities=18%  Similarity=0.254  Sum_probs=196.2

Q ss_pred             eeccC-CCeEEEEc-CCEEEEEECCCCCeeeEEEecCC---CCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC-----
Q 012679          147 LDWGS-SNVLAIAL-GSTVYLWDASDGTTSELVTVDDE---NGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA-----  214 (458)
Q Consensus       147 ~~~~~-~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h---~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~-----  214 (458)
                      +.+++ ...++++. ...|.|||.+.++.  +..+..+   ...|+.+.+..  |..++++|+.||.|+||+--.     
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence            44445 34455555 56899999998886  4444332   35799999876  567899999999999996422     


Q ss_pred             ceeeEEecC------CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEE
Q 012679          215 NRQLRTLRG------GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASG  285 (458)
Q Consensus       215 ~~~~~~~~~------~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg  285 (458)
                      .+.+....+      +..+.-.-+.|.  ..+|++++.-..|+|||......+.....+....|+++.-+- .|+.+++|
T Consensus      1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred             ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence            233322221      111222446673  344555555789999999876654444445556677776543 47999999


Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeeecccccc--eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EE----e
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA--VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SV----D  357 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~----~  357 (458)
                      ..||.|++||.+.....   ..+...+.|+..  |..+.+.+.|-.-+++|+  .||.|++||++......  ++    +
T Consensus      1228 faDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred             ecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccc
Confidence            99999999999887653   225667788887  999999987666677766  99999999999843222  22    2


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-------CCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-------TSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-------~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      .++..+++..+++...+++  |.. +.|.||++... ++..++.+       .+.+.|++|+|-.-.+|.|+.|.+|.||
T Consensus      1303 yGs~lTal~VH~hapiiAs--Gs~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIAS--GSA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             cCccceeeeeccCCCeeee--cCc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence            2556999999999999988  544 89999998543 22222222       3567999999999999999999999999


Q ss_pred             ecCCCC
Q 012679          431 NVFGAP  436 (458)
Q Consensus       431 ~~~~~~  436 (458)
                      ......
T Consensus      1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred             ecCCcC
Confidence            886544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.2e-16  Score=135.64  Aligned_cols=234  Identities=16%  Similarity=0.223  Sum_probs=176.1

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCC---------ce-eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTA---------NR-QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~---------~~-~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~  254 (458)
                      .|.+-+|+|.+++|++|..+|.|.+..+.+         ++ .+...+ +|.++|..++|...+|++|+. |.|+-|..+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~   89 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWN   89 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehhheeeccC-ceEEEeeeh
Confidence            356678999999999999999999998753         22 223334 499999999999888888876 999999876


Q ss_pred             CCCee------E-EEEccc-----ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679          255 VRDHI------V-ETYRGH-----NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       255 ~~~~~------~-~~~~~h-----~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      .....      . ....-|     --+|+++...|..+-++.++.|+.++-||+++++.      ...+++|+..|.+++
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i------~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI------QREYRGHTDYVHSVV  163 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE------EEEEcCCcceeeeee
Confidence            43220      0 011112     23688999999888888888999999999999987      788999999999998


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC---------eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ---------VCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      --...+.++ +|+  .||++|+||+++++++..+..-..         -.-.+..-+...+++  | ....+.+|.+++.
T Consensus       164 ~R~~~~qil-sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC--G-gGp~lslwhLrss  237 (325)
T KOG0649|consen  164 GRNANGQIL-SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC--G-GGPKLSLWHLRSS  237 (325)
T ss_pred             ecccCccee-ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe--c-CCCceeEEeccCC
Confidence            755444444 554  999999999999999988853211         112344456667776  3 2457999999999


Q ss_pred             eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +....+. -..+|..+.|..|  .+++++..+.|.-|.+.+.
T Consensus       238 e~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  238 ESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             CceEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence            9888775 4567788888544  6788888888999988654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=1.8e-17  Score=146.54  Aligned_cols=228  Identities=19%  Similarity=0.328  Sum_probs=173.2

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCceeeEEecC--CCcccEE
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQLRTLRG--GHRSRVG  230 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~~~~~~--~~~~~v~  230 (458)
                      ++++|.-|.|+|.|+.++++  ...+.+|...|..+.+.|+ .+++++++.|..|++|++++..++..+.+  +|...|.
T Consensus       108 la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             EEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            66777789999999999987  6778899999999999995 57899999999999999999999988864  6999999


Q ss_pred             EEEeC--CCeEEEEeCCCcEEEEEccCCCe---e------------------------EEEEcccccceEeEEEcCCCCE
Q 012679          231 SLAWN--NHILTTGGMDGLIINNDVRVRDH---I------------------------VETYRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       231 ~l~~~--~~~l~sg~~dg~i~vwd~~~~~~---~------------------------~~~~~~h~~~v~~l~~spd~~~  281 (458)
                      ++.|+  +.+|++++.|..|++|++...+.   +                        ..+..-|...|-|+.|-  |++
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~  263 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF  263 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence            99995  78999999999999999984320   0                        01223466777777774  688


Q ss_pred             EEEEECCCcEEEEeCCCCCCC--------CcceeeeeecccccceeEE--EecCCCCcEEEEeCCCCCCeEEEEECCCCC
Q 012679          282 LASGGNDNLLHIWDRSMASSN--------SVTQWLHRLEEHTSAVKAI--AWCPFQSNLLATGGGGGDRCIKFWNTHTGA  351 (458)
Q Consensus       282 l~sg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l--~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~  351 (458)
                      +++-+-++.|..|........        .....+..+.-....|.-+  +|.|.+. +||.|.  ..|.|.+||++..+
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gn--q~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGN--QSGKVYVWDLDNNE  340 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhcc--CCCcEEEEECCCCC
Confidence            999999999999987221111        1111233344444455544  5567544 455554  89999999999876


Q ss_pred             eeE--EE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          352 CLN--SV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       352 ~~~--~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      +..  ++   ..+..|...+|+.++..|+..+  +|+.|.-||.
T Consensus       341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc--dd~~Vwrwdr  382 (385)
T KOG1034|consen  341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC--DDGTVWRWDR  382 (385)
T ss_pred             CccCceEEeccccceeeeeeecccCcEEEEEe--CCCcEEEEEe
Confidence            532  22   2356699999999999999966  8999999985

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8.1e-18  Score=157.71  Aligned_cols=247  Identities=17%  Similarity=0.300  Sum_probs=177.8

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vw  251 (458)
                      ...+.+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|.+.|.++.|    ++.++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            45678999999999999999999999999999999999999999999899999999999    57899999999999999


Q ss_pred             EccCC---------CeeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcce----eeeeecccccc
Q 012679          252 DVRVR---------DHIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQ----WLHRLEEHTSA  317 (458)
Q Consensus       252 d~~~~---------~~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~~~h~~~  317 (458)
                      |+...         ......+..|...|..|+-.|++ +.+.++++||+|+-+|++....-....    .+..+...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            99852         22244566899999999999988 789999999999999999754321111    01112222345


Q ss_pred             eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEE-----EeCCCCeEEE-EEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNS-----VDTGSQVCAL-LWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~-----~~~~~~v~~~-~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      .+++..+|...++|++|+  .|-..++||.+...+ ...     ........++ -|+|.+-..      .+|.      
T Consensus       203 lk~ltisp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn------~~gn------  268 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN------SQGN------  268 (758)
T ss_pred             eeeeeecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC------cccc------
Confidence            689999999999999987  999999999643211 110     0000011111 122221100      0010      


Q ss_pred             CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       391 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                              +......++.+.|+|+|.-|+..-....|+++|+..++.......+
T Consensus       269 --------~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~  314 (758)
T KOG1310|consen  269 --------LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP  314 (758)
T ss_pred             --------cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence                    0001123578899999988777777779999999987766554433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=2.3e-16  Score=156.05  Aligned_cols=230  Identities=18%  Similarity=0.184  Sum_probs=161.9

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCcee--eEEecCCCcccEEEEEe-
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQ--LRTLRGGHRSRVGSLAW-  234 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~-  234 (458)
                      ..|++||......   ..+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+ |   ...++| 
T Consensus       184 ~~i~i~d~dg~~~---~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~---~~~~~wS  256 (429)
T PRK01742        184 YEVRVADYDGFNQ---FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-H---NGAPAFS  256 (429)
T ss_pred             EEEEEECCCCCCc---eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-c---cCceeEC
Confidence            5899999876553   3445667789999999999999988654   3699999988754  322322 3   335677 


Q ss_pred             -CCCeEEEE-eCCCcEEEE--EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeee
Q 012679          235 -NNHILTTG-GMDGLIINN--DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       235 -~~~~l~sg-~~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~  309 (458)
                       +++.|+.+ +.+|.+.+|  |+.++.  ...+..+...+....|+|||+.|+.++ .+|...||++......     ..
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----~~  329 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----AS  329 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----eE
Confidence             56777765 468876555  554443  455666777788999999999877665 5788888887553321     11


Q ss_pred             eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      .+ .+..  ...+|+|++..+++++   .++ +.+||+.+++....... .......|+|+++.++.+.  .++.+.+|.
T Consensus       330 ~l-~~~~--~~~~~SpDG~~ia~~~---~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s--~~g~~~~l~  399 (429)
T PRK01742        330 LV-GGRG--YSAQISADGKTLVMIN---GDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSS--TQGLGKVLQ  399 (429)
T ss_pred             Ee-cCCC--CCccCCCCCCEEEEEc---CCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEE--cCCCceEEE
Confidence            22 3333  4578999988776654   344 56699999876533222 2345678999999999864  577777776


Q ss_pred             C--CCceeeEEEeCCCCcEEEEEEcCC
Q 012679          390 Y--PSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       390 ~--~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                      +  .++..+..+.+|.+.+...+|+|-
T Consensus       400 ~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        400 LVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEECCCCceEEccCCCCCCCCcccCCC
Confidence            5  357778888888888999999984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.3e-16  Score=141.80  Aligned_cols=228  Identities=18%  Similarity=0.292  Sum_probs=172.9

Q ss_pred             CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEEEccCCCeeE-EEEcccc-cc
Q 012679          196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIV-ETYRGHN-QE  269 (458)
Q Consensus       196 ~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~-~~  269 (458)
                      ..+|++..+|.|++||..+++.+..+.+ ++..+..+.|    .++.+.+++.||+|++||+|...... ....++. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            5789999999999999999999999998 8888888888    36899999999999999999876432 3334444 46


Q ss_pred             eEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEE
Q 012679          270 VCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW  345 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw  345 (458)
                      ..+++....++.+++|+.    |-.|.+||++..+..    ...-...|...|+++.|+|..+++|++|+  .||.|.++
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlf  193 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----LRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLF  193 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccch----hhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEee
Confidence            777877778888888864    678999999987652    12234679999999999999999999987  99999999


Q ss_pred             ECCCC----CeeEEEeCCCCeEEEEEcCCC--CeEEEEecCCCCcEEEEeCCCceeeEEEeCCC------------CcEE
Q 012679          346 NTHTG----ACLNSVDTGSQVCALLWNKNE--RELLSSHGFTQNQLTLWKYPSMVKMAELSGHT------------SRVL  407 (458)
Q Consensus       346 d~~~~----~~~~~~~~~~~v~~~~~s~~~--~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~------------~~V~  407 (458)
                      |+...    ..+.++.+.+.|..+.|..++  +....+   ......+|+++.+.....+....            ..+.
T Consensus       194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I  270 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI  270 (376)
T ss_pred             ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence            99764    356677888999999999888  544443   47899999998877655443221            1111


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecC
Q 012679          408 FMAQSPDGCTVASAAA-DETLRFWNVF  433 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~-Dg~i~iW~~~  433 (458)
                      ..-...++.+++.++. -+...++-+.
T Consensus       271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~  297 (376)
T KOG1188|consen  271 NEHSPGDKDTCALAGTDSNKGTIFPLV  297 (376)
T ss_pred             ecccCCCcceEEEeccccCceeEEEee
Confidence            1111225556666665 5677777655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=8.4e-17  Score=150.57  Aligned_cols=260  Identities=18%  Similarity=0.305  Sum_probs=187.8

Q ss_pred             ceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-------CCCEEEEEecCCeEEEEeCCCce
Q 012679          145 NLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-------DGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       145 ~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-------~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      .+++|.. ..++.++.|..+.+|.-.+.....+..+.. ..-.+.+-.-+       ....|+.++.||.+.|.+ ..++
T Consensus        18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~r   95 (737)
T KOG1524|consen   18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSAR   95 (737)
T ss_pred             EeecccccceEEEeccCceEEEeecccchhhhhhhCCc-ccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccch
Confidence            3788877 568888888888777644333222332221 11111111111       235789999999999987 4566


Q ss_pred             eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679          217 QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW  294 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw  294 (458)
                      ..+.+.. |.+.+.+-.|+  |.-|++++.||.|++|.-...  +..++.....+|.|++|.|+.+.++.+- .+.+.|=
T Consensus        96 VE~sv~A-H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK  171 (737)
T KOG1524|consen   96 VERSISA-HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK  171 (737)
T ss_pred             hhhhhhh-hhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence            6666666 99999999994  789999999999999985432  2334445677899999999988776654 3567776


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  374 (458)
                      .+.....      +.+.+.|.+-|.++.|++ ...++++||  .|-..++||.........-.+..+|++++|+|+..++
T Consensus       172 pL~~n~k------~i~WkAHDGiiL~~~W~~-~s~lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~  242 (737)
T KOG1524|consen  172 PLAANSK------IIRWRAHDGLVLSLSWST-QSNIIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYL  242 (737)
T ss_pred             ecccccc------eeEEeccCcEEEEeecCc-cccceeecC--CceeEEeecccCcccccCChhccceeeeeecccccee
Confidence            6655544      667789999999999999 588999987  9999999998766666666778899999999994333


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +-    +-+++++           -....+.|..++||+||..++.|+..|.|.+=.+-+
T Consensus       243 v~----S~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie  287 (737)
T KOG1524|consen  243 LW----SYNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE  287 (737)
T ss_pred             ee----eeeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence            32    2233331           123457899999999999999999999887655443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=2.3e-16  Score=155.63  Aligned_cols=252  Identities=17%  Similarity=0.268  Sum_probs=182.2

Q ss_pred             CCCceeeeCCCCCCccccceeec---cCCCeEEEEcCCEEEEEECCCCCeeeE----EEecCCCCCEEEEEEcCCC--CE
Q 012679          127 QSSERTLDAPDLVDDYYLNLLDW---GSSNVLAIALGSTVYLWDASDGTTSEL----VTVDDENGPVTSVNWAPDG--RH  197 (458)
Q Consensus       127 ~~~~~~l~~~~~~~d~~~~~~~~---~~~~~la~~~d~~v~iwd~~~~~~~~~----~~~~~h~~~V~~v~~s~~g--~~  197 (458)
                      ..|+.++..+..     +.++.+   +++.++.|+.+|.|.+||+..+.....    .....|..+|+.+.|..+.  .-
T Consensus       233 ~~Pe~~~~~~s~-----v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~  307 (555)
T KOG1587|consen  233 NTPELVLESPSE-----VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE  307 (555)
T ss_pred             CCceEEEecCCc-----eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc
Confidence            466777776543     344444   457788888899999999987654211    2234689999999998744  44


Q ss_pred             EEEEecCCeEEEEeCCCceeeE------Eec-----CCCcccEEEEEe---CCCeEEEEeCCCcEEEEE---ccCCC---
Q 012679          198 IAIGLNNCQVQLWDSTANRQLR------TLR-----GGHRSRVGSLAW---NNHILTTGGMDGLIINND---VRVRD---  257 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~~~~~------~~~-----~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd---~~~~~---  257 (458)
                      +++++.||.|..|+++.-....      ...     ......+++++|   ++..++.|+.+|.|..-.   .+...   
T Consensus       308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~  387 (555)
T KOG1587|consen  308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS  387 (555)
T ss_pred             eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence            9999999999999875432210      011     013356788888   578999999999997733   22222   


Q ss_pred             -eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          258 -HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       258 -~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                       .....+..|.+.|.++.++|=+..++..+.|-+|+||.......     ++..+..+...|.+++|||....+++++. 
T Consensus       388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~-----Pl~~~~~~~~~v~~vaWSptrpavF~~~d-  461 (555)
T KOG1587|consen  388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS-----PLLSLDSSPDYVTDVAWSPTRPAVFATVD-  461 (555)
T ss_pred             ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC-----cchhhhhccceeeeeEEcCcCceEEEEEc-
Confidence             12335567899999999999666555444599999999773222     26777788888999999999999999987 


Q ss_pred             CCCCeEEEEECCCC--CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          337 GGDRCIKFWNTHTG--ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       337 ~~d~~i~lwd~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                       .||.|.+||+...  .++.+... ....+.+.|++.|+.+++  |...|.+.+|++..
T Consensus       462 -~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  462 -GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLSE  517 (555)
T ss_pred             -CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcCc
Confidence             8999999999754  34444433 344677788888999998  88999999999853

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.2e-14  Score=130.75  Aligned_cols=273  Identities=15%  Similarity=0.200  Sum_probs=200.5

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEE
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~  220 (458)
                      ++.+.|+. ..++++|.....++|+.+.-..  ..........|..+-|+.  .++|..+.+.  .+++++++....+..
T Consensus         8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEE
Confidence            44455776 4588888888888998775432  222233344566666764  4566655443  599999998888888


Q ss_pred             ecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEE---cccccceEeEEEcCCCCEEEEEE--CCCcEEEEe
Q 012679          221 LRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY---RGHNQEVCGLKWSASGQQLASGG--NDNLLHIWD  295 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~sg~--~dg~i~iwd  295 (458)
                      +.  ....|.++..|.+.|+++-.+. |+|||++.... +.++   ..+...++++.+++.+.+||.-+  ..|.|.|||
T Consensus        84 ~~--fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl-LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d  159 (391)
T KOG2110|consen   84 IF--FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKL-LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD  159 (391)
T ss_pred             Ee--cCCceEEEEEccceEEEEEccc-EEEEeccccee-ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence            87  7789999999998888887765 99999997764 3333   34667788888888888998643  468999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEeCC---CCeEEEEEcCCC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVDTG---SQVCALLWNKNE  371 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~  371 (458)
                      ..+.+.      ...+..|.+.+.+++|+++ +.++|+++  ..|+ ||++.+.+|+.+..+..+   ..|.+++|++++
T Consensus       160 ~~nl~~------v~~I~aH~~~lAalafs~~-G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  160 TINLQP------VNTINAHKGPLAALAFSPD-GTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             ccccee------eeEEEecCCceeEEEECCC-CCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence            988766      7888999999999999996 67788876  6665 899999999999999765   468999999999


Q ss_pred             CeEEEEecCCCCcEEEEeCCCce-------------------------------------eeEEEeCCCC---cEEEEEE
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMV-------------------------------------KMAELSGHTS---RVLFMAQ  411 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~-------------------------------------~~~~~~~h~~---~V~~l~~  411 (458)
                      .+|.+++  +.++|.||.+..-.                                     ..+..+...+   .+..+.-
T Consensus       231 ~~L~~sS--~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~  308 (391)
T KOG2110|consen  231 QFLAASS--NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS  308 (391)
T ss_pred             CeEEEec--CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence            9998854  78999999874211                                     0111111111   1222222


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCC
Q 012679          412 SPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .+....+..++.||.++.|.+...
T Consensus       309 ~~~~~~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  309 IQKIPRVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             cCCCCEEEEEEcCCeEEEEEcCCC
Confidence            246778889999999999998653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=1.5e-17  Score=162.86  Aligned_cols=281  Identities=16%  Similarity=0.230  Sum_probs=219.2

Q ss_pred             CCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          137 DLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       137 ~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      +..+-.|+..+|-++.++++++.|..|+||..+++.+  +..+.||.+.|+.++.+.+..++|+++.|..|++|.+..+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhh--hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            4445567777777788999999999999999888877  88999999999999999999999999999999999999999


Q ss_pred             eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeE--EEEc-ccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIV--ETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      .+..+.+ |.+.|++++|.+..  +.+.||++++||.+-.....  ..+. ....-+.++.|..++.-+++|+.|+.-..
T Consensus       266 pvsvLrg-htgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n  342 (1113)
T KOG0644|consen  266 PVSVLRG-HTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN  342 (1113)
T ss_pred             hHHHHhc-cccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence            9999998 99999999998755  78899999999998221100  0011 22356788888889999999999999988


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCC
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNER  372 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~  372 (458)
                      |.+.....            +...+.-+..+.+...+.+++-  .+..+.+|++.+|..++.... ...+..+.++|-..
T Consensus       343 ~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~  408 (1113)
T KOG0644|consen  343 HEFEQLAW------------RSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP  408 (1113)
T ss_pred             chhhHhhh------------hccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence            88654332            2222222333323334444443  678899999999988877654 45688999999988


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      .++...| .||...|||+-.+.++..+....+.+..-.||+||..++....-|.+.|.....++.
T Consensus       409 ri~msag-~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  409 RIAMSAG-YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             Hhhhhcc-CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            8887756 699999999999888776543345566779999999999888889999988765443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.6e-15  Score=147.70  Aligned_cols=280  Identities=17%  Similarity=0.253  Sum_probs=208.5

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCC---CEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG---RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR  228 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g---~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  228 (458)
                      ...+.+..+..|.||...+|.+  +..+++|..+++.+.+.|..   .++.+++.+|.|++||...+..++++..  ..+
T Consensus        28 ~k~l~~~~~~~V~VyS~~Tg~~--i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~--~~~  103 (792)
T KOG1963|consen   28 AKFLFLCTGNFVKVYSTATGEC--ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN--NLP  103 (792)
T ss_pred             CcEEEEeeCCEEEEEecchHhh--hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec--CCc
Confidence            6788889999999999999988  56889999999999998844   4778999999999999998888877653  111


Q ss_pred             EEEEEe-----------------------------------------------------------C-CCeEEEEeCCCcE
Q 012679          229 VGSLAW-----------------------------------------------------------N-NHILTTGGMDGLI  248 (458)
Q Consensus       229 v~~l~~-----------------------------------------------------------~-~~~l~sg~~dg~i  248 (458)
                      +..+.+                                                           + ...+.....+..+
T Consensus       104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~  183 (792)
T KOG1963|consen  104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI  183 (792)
T ss_pred             eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence            111111                                                           0 0011111222344


Q ss_pred             EEEEccCCCeeE---EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          249 INNDVRVRDHIV---ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       249 ~vwd~~~~~~~~---~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      .+|.+.......   ..-..|.-.+++.++||+++++|+|..||.|.+|.--.....  ..-.+.+.-|...|.+++|++
T Consensus       184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~--~~t~t~lHWH~~~V~~L~fS~  261 (792)
T KOG1963|consen  184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD--SETCTLLHWHHDEVNSLSFSS  261 (792)
T ss_pred             EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc--cccceEEEecccccceeEEec
Confidence            555555432111   111246667899999999999999999999999974431111  111466778999999999999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC---
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH---  402 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h---  402 (458)
                      +|.+++ +||  ..+.+.+|.+.+++...-...+++|..+.++|++......+  .|++|.+....+++...++.|-   
T Consensus       262 ~G~~Ll-SGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~--~DNqI~li~~~dl~~k~tIsgi~~~  336 (792)
T KOG1963|consen  262 DGAYLL-SGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL--EDNQIHLIKASDLEIKSTISGIKPP  336 (792)
T ss_pred             CCceEe-ecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe--cCceEEEEeccchhhhhhccCccCC
Confidence            877665 454  89999999999999555556789999999999999998876  6999999999887766555432   


Q ss_pred             --------CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          403 --------TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       403 --------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                              .+-.+.++++|.-+.++-.+.-|.|.+||+.+...+.+..
T Consensus       337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence                    2346788999977788889999999999999888776543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=8.7e-17  Score=153.14  Aligned_cols=226  Identities=17%  Similarity=0.324  Sum_probs=165.5

Q ss_pred             EcCCEEEEEECCCC-Ceee--EEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCce-------eeEEecCCCc
Q 012679          158 ALGSTVYLWDASDG-TTSE--LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANR-------QLRTLRGGHR  226 (458)
Q Consensus       158 ~~d~~v~iwd~~~~-~~~~--~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~-------~~~~~~~~~~  226 (458)
                      +.+|.|-||++... ++..  +-.+. ....|+.+.|.| |...||+++.||.|+||.+..+.       ....+.. |.
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~  677 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HG  677 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-cc
Confidence            45789999998752 2210  11121 256799999999 88899999999999999987553       3344555 99


Q ss_pred             ccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCC
Q 012679          227 SRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS  303 (458)
Q Consensus       227 ~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~  303 (458)
                      ..|+++.|++   +.|++++.|.+|.+||+++... ...+.+|++.|.+++|||||+.+|+.+.||+|++|+.+..... 
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p-  755 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP-  755 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc-
Confidence            9999999985   8999999999999999997764 5778999999999999999999999999999999998887642 


Q ss_pred             cceeeeeeccc-ccceeEEEecCCCCcEEEEeCC-CCCCeEEEEECCCC--CeeEEE--eCCCCeEEEEEcCCCCeEEEE
Q 012679          304 VTQWLHRLEEH-TSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTHTG--ACLNSV--DTGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       304 ~~~~~~~~~~h-~~~v~~l~~~p~~~~ll~s~~g-~~d~~i~lwd~~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~~~  377 (458)
                          +..-.+. ...--.|.|.-++..++++|-. ...+.|.+||..+-  ..+.+.  +...++.--.+.+|...++.+
T Consensus       756 ----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt  831 (1012)
T KOG1445|consen  756 ----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT  831 (1012)
T ss_pred             ----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe
Confidence                2221111 1122356777788888888731 23467889998763  344333  333333344567777777765


Q ss_pred             ecCCCCcEEEEeCCC
Q 012679          378 HGFTQNQLTLWKYPS  392 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~  392 (458)
                       |-.|..|.+|.+-.
T Consensus       832 -GKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  832 -GKGDRFVNMYEVIY  845 (1012)
T ss_pred             -cCCCceEEEEEecC
Confidence             77888999998744

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.9e-14  Score=129.47  Aligned_cols=238  Identities=12%  Similarity=0.205  Sum_probs=179.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC--cEEEEEccCCCeeE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG--LIINNDVRVRDHIV  260 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg--~i~vwd~~~~~~~~  260 (458)
                      ...+..+.|..+...|.+|+.|| .++|..+.......... ....|.-+-|+..+++..+.+.  .+++++++....+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~-~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDT-EGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccC-CCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence            34577778999999999999997 68888766554333222 4456777778888888777654  48888887655432


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec---ccccceeEEEecCCCCcEEEEeCCC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      ...  ...+|.++.++  -+.|+++-.+ .|+|||++..+.      ++++.   .+...+.+++.++.+.++.+-+ ..
T Consensus        83 e~~--fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~Mkl------LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~-s~  150 (391)
T KOG2110|consen   83 EIF--FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKL------LHTIETTPPNPKGLCALSPNNANCYLAYPG-ST  150 (391)
T ss_pred             EEe--cCCceEEEEEc--cceEEEEEcc-cEEEEeccccee------ehhhhccCCCccceEeeccCCCCceEEecC-CC
Confidence            222  35678888875  4456666654 499999999877      55554   3445566666666544555443 34


Q ss_pred             CCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCC-cEEEEeCCCceeeEEEeCCC--CcEEEEEEcC
Q 012679          338 GDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVKMAELSGHT--SRVLFMAQSP  413 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~-~i~iwd~~~~~~~~~~~~h~--~~V~~l~~sp  413 (458)
                      ..|.|.+||+.+-+.+..+. |.+.+-+++|+++|..|++++  +.| .|+||.+++++++.+|+.-.  ..|.+++|+|
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP  228 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence            67899999999999998886 467899999999999999964  566 58999999999999997544  4589999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCC
Q 012679          414 DGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ++++|++.|..++|.+|++....
T Consensus       229 ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  229 DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCCeEEEecCCCeEEEEEecccc
Confidence            99999999999999999997665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=8.6e-18  Score=164.47  Aligned_cols=249  Identities=19%  Similarity=0.286  Sum_probs=186.8

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~  253 (458)
                      +..+.+|...|+|+.|...|.++++|+.|..|+||..+++.++....+ |.+.|+.++.+  +.++++++.|..|++|.+
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEec
Confidence            345668999999999999999999999999999999999999999998 99999999984  678899999999999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      ..+. ++..+.+|++.|++++|+|-.    +.+.||++++||.+-........+. .+. ....+.++.|...+ .-+++
T Consensus       262 ~~~~-pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~-~~~-~~~~~~s~~~~~~~-~~f~T  333 (1113)
T KOG0644|consen  262 PDGA-PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL-KFT-EKDLVDSILFENNG-DRFLT  333 (1113)
T ss_pred             CCCc-hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC-Ccc-cccceeeeeccccc-ccccc
Confidence            9776 478899999999999999954    7789999999998832221111111 111 22455666676643 33445


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS  412 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  412 (458)
                      ++  .|+.-..|.+.-..+..     ..+.-+..+.+. .+.++  .-.+-.+.+|++.++...+.+.+|...+.-|.++
T Consensus       334 gs--~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~--ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  334 GS--RDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVT--ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             cc--CCcccccchhhHhhhhc-----cceEEEecccccccccee--eeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence            44  88887777654321110     001111111122 23333  2356788999999999999999999999999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          413 P-DGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       413 p-dg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      | +.....+++.||...|||+..+.++....
T Consensus       405 pfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeecccCCcceeee
Confidence            9 55566789999999999999988776655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.3e-14  Score=143.24  Aligned_cols=236  Identities=15%  Similarity=0.100  Sum_probs=159.8

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~  236 (458)
                      .|++||.+......+   ..+...+.+.+|+|||+.|+..+.   +..|.+||+.+++......  ....+..+.|  ++
T Consensus       180 ~l~~~d~dg~~~~~l---t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG  254 (429)
T PRK03629        180 ELRVSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDG  254 (429)
T ss_pred             eEEEEcCCCCCCEEe---ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCC
Confidence            799999887664333   335668999999999999987643   3479999998876433222  2233445677  56


Q ss_pred             CeEEEE-eCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-Cc--EEEEeCCCCCCCCcceeeee
Q 012679          237 HILTTG-GMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-NL--LHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       237 ~~l~sg-~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~~  310 (458)
                      ..|+.. +.+|  .|++||+.++..  ..+..+...+....|+|||+.|+..+.+ +.  |+++|+..+.       ...
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-------~~~  325 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-------PQR  325 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-------eEE
Confidence            666654 5455  588899987653  3444445567889999999999877764 44  4444665443       233


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEe
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWK  389 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd  389 (458)
                      +..+........|+|++..+++++.......|.+||+.+++... +..........|+|+|+.++.++... ...+.+++
T Consensus       326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            33344456678999999888877642233568999998887543 33333345788999999999875321 12367777


Q ss_pred             CCCceeeEEEeCCCCcEEEEEEcC
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      + ++.....+.+|.+.+...+|+|
T Consensus       405 ~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        405 T-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             C-CCCCeEECccCCCCcCCcccCC
Confidence            7 4555566778888899999987

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.2e-16  Score=148.86  Aligned_cols=251  Identities=21%  Similarity=0.269  Sum_probs=177.5

Q ss_pred             ccccceeeccC--CCeEEEEcCCEEEEEECC------CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679          141 DYYLNLLDWGS--SNVLAIALGSTVYLWDAS------DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~------~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~  212 (458)
                      +-++..+.+++  ..+++++.+|.|.+|+++      ...+.++.++.+|.++|.|++..+++.++.+|+.||+|+.|++
T Consensus       294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~  373 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL  373 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence            33566666665  569999999999999993      3456789999999999999999999999999999999999965


Q ss_pred             CCc---------eee-EEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC-
Q 012679          213 TAN---------RQL-RTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG-  279 (458)
Q Consensus       213 ~~~---------~~~-~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~-  279 (458)
                      ...         ..+ ..+. +|...|+.++++  ...|++++.||+++.|+......+........+.-..+.+-... 
T Consensus       374 p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  374 PPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             CCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence            421         122 3344 499999999995  57899999999999999876554211111112223345543322 


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679          280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC  352 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~  352 (458)
                      .+.++...-+.--+++......      +..+.       .....+..+.++|.. .+.+++.  .|+.|+++|..++++
T Consensus       453 a~~~~s~~~~~~~~~~~ev~s~------~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h--ed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  453 AHSLASFRFGYTSIDDMEVVSD------LLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH--EDRSIRFFDNKTGKI  523 (577)
T ss_pred             Hhhhhhcccccccchhhhhhhh------eeeccccCCCcccccCccceEEecCCC-CeeEecc--cCCceeccccccccc
Confidence            1222222222222333333222      11111       112356778899965 5555555  999999999999998


Q ss_pred             eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          353 LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       353 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                      +.... +...++++++.|+|.++++  |..|+.+++|.+.....+.....|.
T Consensus       524 l~s~~a~~~svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  524 LHSMVAHKDSVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             chheeeccceecceeecCCCceEEe--ecCCceeehhhccchheeecccccc
Confidence            87764 4567999999999999999  7799999999998877777766664

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.6e-14  Score=129.56  Aligned_cols=281  Identities=17%  Similarity=0.285  Sum_probs=183.2

Q ss_pred             ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCc--
Q 012679          141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTAN--  215 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~--  215 (458)
                      ...+.-++|++  .-+++++.|..|++||........+...  -...|+|++|-| .+..|++|+..| |.||.....  
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~--sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecch--hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence            34577799998  3477788899999999877433222222  256799999999 456788888775 999975422  


Q ss_pred             --ee--------eEEecCCCcccEEEEEeC--CCeEEEEeC-CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679          216 --RQ--------LRTLRGGHRSRVGSLAWN--NHILTTGGM-DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL  282 (458)
Q Consensus       216 --~~--------~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  282 (458)
                        ..        ...++......|+++.|+  +..+++++. |..|.|||+.++...- ......+.+.-+.||||+.+|
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-L~~~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-LIPKGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-ccccCCCceeeEEEcCCCCEE
Confidence              11        111222223789999994  678887765 6789999999887532 222345678889999999999


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCC--------e
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGA--------C  352 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~--------~  352 (458)
                      +.++-|+..++|+....-..     .. ..-..+.|...+|+|.|..+|.+++  ....|+-....  .+.        .
T Consensus       254 faAt~davfrlw~e~q~wt~-----er-w~lgsgrvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQSWTK-----ER-WILGSGRVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             EEecccceeeeehhccccee-----cc-eeccCCceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCccccee
Confidence            99999999999965443221     11 1123458999999999999999876  23233222111  110        0


Q ss_pred             ---eEEE-----e-----CCCCeEEEEEcCCCCeEEEEecCCC------CcEEEEeCCCceeeEEE-eCC--CCcEEEEE
Q 012679          353 ---LNSV-----D-----TGSQVCALLWNKNERELLSSHGFTQ------NQLTLWKYPSMVKMAEL-SGH--TSRVLFMA  410 (458)
Q Consensus       353 ---~~~~-----~-----~~~~v~~~~~s~~~~~l~~~~g~~d------~~i~iwd~~~~~~~~~~-~~h--~~~V~~l~  410 (458)
                         +..+     .     ..++..+++|+|.|.++++..-..+      ..|.+||....-.+.-. -+-  ......+.
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~Is  405 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYIS  405 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEE
Confidence               0000     1     2456889999999999998653222      34666776554333221 111  11244567


Q ss_pred             EcC---CCCEEEEEeCCCcEEEEecC
Q 012679          411 QSP---DGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       411 ~sp---dg~~l~s~s~Dg~i~iW~~~  433 (458)
                      |+|   +|.+|..+=.-|.+.-|++.
T Consensus       406 F~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  406 FGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             eeecccCCcEEEEEeccCceEeeeeE
Confidence            766   67777777778888888764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.6e-14  Score=143.24  Aligned_cols=285  Identities=15%  Similarity=0.227  Sum_probs=203.1

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEE---ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC--c--eeeEEecC
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVT---VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA--N--RQLRTLRG  223 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~---~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~--~--~~~~~~~~  223 (458)
                      ...+..+..+..+++|+..++. .....   -..|...++|.++||+++++|+|..||.|.+|.--.  +  .....+.=
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW  249 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW  249 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence            3678888889999999998755 22221   125677799999999999999999999999995322  1  22334444


Q ss_pred             CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          224 GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       224 ~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                       |...|.+++|  +|.+|++|+..|.+.+|.+.++.  .+.+..-.++|..+.++||+.+.+....|+.|.+-...+...
T Consensus       250 -H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  250 -HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             -cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence             8889999999  68999999999999999999887  355666788999999999999999999999999998755443


Q ss_pred             CCcceeeee-----ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC------------CCCeEE
Q 012679          302 NSVTQWLHR-----LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT------------GSQVCA  364 (458)
Q Consensus       302 ~~~~~~~~~-----~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~------------~~~v~~  364 (458)
                      .....-+..     -....+-.+.++++|..+.++.. +  ..+.|.+||+.+...+..+..            .-.+++
T Consensus       327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-~--~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita  403 (792)
T KOG1963|consen  327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-G--HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA  403 (792)
T ss_pred             hhhccCccCCCccccccccccceeEEEcCCCCceeec-C--CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence            211110110     11124456778899954444443 3  899999999998876655521            123677


Q ss_pred             EEEcCCCCeEEEEec------CC--CCcEEEEeCCCceeeEEE-----eCCCCcEEEEEEcC--CCCEEEEEeCCCcEEE
Q 012679          365 LLWNKNERELLSSHG------FT--QNQLTLWKYPSMVKMAEL-----SGHTSRVLFMAQSP--DGCTVASAAADETLRF  429 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g------~~--d~~i~iwd~~~~~~~~~~-----~~h~~~V~~l~~sp--dg~~l~s~s~Dg~i~i  429 (458)
                      ++.+..|.++++.-.      ..  ...+++|-+.....-..+     ..|...+...++.+  .....++++.||.++|
T Consensus       404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki  483 (792)
T KOG1963|consen  404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI  483 (792)
T ss_pred             ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence            777888888877432      12  346788987654432222     46776655555543  3337899999999999


Q ss_pred             EecCCCCcccccC
Q 012679          430 WNVFGAPQVISKS  442 (458)
Q Consensus       430 W~~~~~~~~~~~~  442 (458)
                      |-+.....+.+..
T Consensus       484 W~~~~~~n~~k~~  496 (792)
T KOG1963|consen  484 WVFTDDSNIYKKS  496 (792)
T ss_pred             EEEecccccCcCc
Confidence            9997766655543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=1e-15  Score=146.73  Aligned_cols=227  Identities=16%  Similarity=0.288  Sum_probs=168.4

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      .|..++|-|||..|+.+..+ .+.+||...|..+.++++ |...|.|++|  +|..+++|+.|..|.+|...-...   .
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---L   88 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCCceeEEEecccccce---e
Confidence            69999999999999888665 799999999999999998 9999999999  689999999999999998764432   1


Q ss_pred             EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI  342 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i  342 (458)
                      -..|...|.|+.|+|-...|++++- ...-+|.......       .+. .....+.+.+|..||.++ +.|-  .+|+|
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-------~K~-kss~R~~~CsWtnDGqyl-alG~--~nGTI  156 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-------SKH-KSSSRIICCSWTNDGQYL-ALGM--FNGTI  156 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-------Hhh-hhheeEEEeeecCCCcEE-EEec--cCceE
Confidence            2369999999999999999999886 3466887655432       111 234678899999976555 4444  89999


Q ss_pred             EEEECCCCCeeEEEe----CCCCeEEEEEcCCCC-----eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          343 KFWNTHTGACLNSVD----TGSQVCALLWNKNER-----ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       343 ~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~-----~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      .+-+- +|+....++    .+++|.+++|+|...     .+++  -....++.+|.+. |+.+..-+.-.-...|+.+.+
T Consensus       157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV--~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~  232 (1081)
T KOG1538|consen  157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV--ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT  232 (1081)
T ss_pred             EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE--EeccceeEEEEec-ceeecccccCCCCchhheecc
Confidence            99865 444444443    256799999999753     1222  1123344444432 333332222333457899999


Q ss_pred             CCCEEEEEeCCCcEEEEec
Q 012679          414 DGCTVASAAADETLRFWNV  432 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~  432 (458)
                      +|.+++.||.|+.+.+|--
T Consensus       233 NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  233 NGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             CCcEEEEccCCCceEEEee
Confidence            9999999999999998853

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=1.5e-14  Score=147.49  Aligned_cols=296  Identities=16%  Similarity=0.183  Sum_probs=200.5

Q ss_pred             CCceeeeCCCCCCccccceeeccC---CCeEEEEcCCEEEEEECCC-----CCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679          128 SSERTLDAPDLVDDYYLNLLDWGS---SNVLAIALGSTVYLWDASD-----GTTSELVTVDDENGPVTSVNWAPDGRHIA  199 (458)
Q Consensus       128 ~~~~~l~~~~~~~d~~~~~~~~~~---~~~la~~~d~~v~iwd~~~-----~~~~~~~~~~~h~~~V~~v~~s~~g~~la  199 (458)
                      .|..++-|.-....-.++.+.-++   ..+++++.||+|++||...     +......++......+.++...+.|+.+|
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            566677776555555555555544   4589999999999999763     22223444544578899999999999999


Q ss_pred             EEecCCeEEEEeCCCc--e-----eeEEecCCCccc-EEEEEeC---CC-eEEEEeCCCcEEEEEccCCCeeE-EEEccc
Q 012679          200 IGLNNCQVQLWDSTAN--R-----QLRTLRGGHRSR-VGSLAWN---NH-ILTTGGMDGLIINNDVRVRDHIV-ETYRGH  266 (458)
Q Consensus       200 ~g~~dg~v~iwd~~~~--~-----~~~~~~~~~~~~-v~~l~~~---~~-~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h  266 (458)
                      +|+.||.|++.++...  +     +.+.......+. |...++.   .. .|+.+...+.|..||++...... ......
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            9999999999998762  1     122222212233 3334442   34 88899999999999998764321 122234


Q ss_pred             ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCC--cEEEEeCCCCCCeEE
Q 012679          267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQS--NLLATGGGGGDRCIK  343 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~--~ll~s~~g~~d~~i~  343 (458)
                      .+.|++++.+|.++++++|+..|.+.+||++-...      +... ..+..++..+..+|..+  ...++++-+..+.|.
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~------i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP------ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCce------eecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence            57899999999999999999999999999987655      2222 23457888888887655  555555433678899


Q ss_pred             EEECCCCCeeEEEeCCCC--------------------eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee-------
Q 012679          344 FWNTHTGACLNSVDTGSQ--------------------VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM-------  396 (458)
Q Consensus       344 lwd~~~~~~~~~~~~~~~--------------------v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~-------  396 (458)
                      +|++.+|.+...+-....                    .....+...+..+++  |..|..|+.||....+..       
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~~ss~~~~~~ 1346 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPEISSYAVPGP 1346 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcccccccccCc
Confidence            999999987766643211                    112222333344444  668999999997321110       


Q ss_pred             -----------------------------------------EE--------EeCCCCcEEEEEEcCC-CCEEEEEeCCCc
Q 012679          397 -----------------------------------------AE--------LSGHTSRVLFMAQSPD-GCTVASAAADET  426 (458)
Q Consensus       397 -----------------------------------------~~--------~~~h~~~V~~l~~spd-g~~l~s~s~Dg~  426 (458)
                                                               ..        -..|...|++|++... ..+|++++.||.
T Consensus      1347 s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~ 1426 (1431)
T KOG1240|consen 1347 STSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGV 1426 (1431)
T ss_pred             cccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCe
Confidence                                                     00        0146677888887653 358899999999


Q ss_pred             EEEEe
Q 012679          427 LRFWN  431 (458)
Q Consensus       427 i~iW~  431 (458)
                      |+||.
T Consensus      1427 IkiWk 1431 (1431)
T KOG1240|consen 1427 IKIWK 1431 (1431)
T ss_pred             eeecC
Confidence            99994

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.69  E-value=7e-14  Score=134.26  Aligned_cols=281  Identities=14%  Similarity=0.155  Sum_probs=181.3

Q ss_pred             CCeEEEE--cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE
Q 012679          152 SNVLAIA--LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       152 ~~~la~~--~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      .+++.+.  .++.|.+.|..+.+.  +.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++..+....-
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~   82 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG   82 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce
Confidence            4444433  479999999999887  556654333334578999999999999999999999999999999986444433


Q ss_pred             EEEEeCCCeEEEEe-CCCcEEEEEccCCCeeEEEEcc-------cccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 012679          230 GSLAWNNHILTTGG-MDGLIINNDVRVRDHIVETYRG-------HNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMAS  300 (458)
Q Consensus       230 ~~l~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~-------h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~  300 (458)
                      ..++.+|+++++++ ..+.+.++|.++.+. ++.+..       ....+.++..+|....++..-. .+.|.+.|.....
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~  161 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK  161 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence            44444788887765 689999999988764 344332       2346788888998886666655 4888888877664


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-----------------------
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-----------------------  357 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-----------------------  357 (458)
                      ..     ...............|+|++.+++++..  .++.|-++|..+++.+..++                       
T Consensus       162 ~~-----~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~  234 (369)
T PF02239_consen  162 NL-----KVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA  234 (369)
T ss_dssp             CE-----EEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred             cc-----ceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEe
Confidence            31     1122223445667899999888887655  56678888877765443321                       


Q ss_pred             --------------------------------CCCCeEEEEEcCCCCeEEEEe--cCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          358 --------------------------------TGSQVCALLWNKNERELLSSH--GFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       358 --------------------------------~~~~v~~~~~s~~~~~l~~~~--g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                                                      ..+.-..+.-+|+++++.+..  +...++|.++|..+.+.+.++....
T Consensus       235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~  314 (369)
T PF02239_consen  235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP  314 (369)
T ss_dssp             EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred             eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence                                            112224556688999988851  2345799999999998888775332


Q ss_pred             -CcEEEEEEcCCCCEEEEEeCC--CcEEEEecCCCCcccccC
Q 012679          404 -SRVLFMAQSPDGCTVASAAAD--ETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       404 -~~V~~l~~spdg~~l~s~s~D--g~i~iW~~~~~~~~~~~~  442 (458)
                       .++.++.|++||+.+..+..|  +.|.+||..+.+......
T Consensus       315 ~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  315 GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence             358999999999977655544  369999998888776655

...

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=8.3e-14  Score=118.62  Aligned_cols=264  Identities=16%  Similarity=0.245  Sum_probs=177.0

Q ss_pred             CCeEEEEcCCEEEEEECCC---------CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-----
Q 012679          152 SNVLAIALGSTVYLWDASD---------GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-----  217 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~---------~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-----  217 (458)
                      ..++++..+|.|.+..+.+         |+ ..+....+|.++|+.++|.  ..+|++|+ ||.|+-|.......     
T Consensus        23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K   98 (325)
T KOG0649|consen   23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATK   98 (325)
T ss_pred             eEEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccch
Confidence            5578888899999998763         22 2355568999999999998  34666665 59999987543221     


Q ss_pred             -eEEec-CCC-----cccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679          218 -LRTLR-GGH-----RSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND  288 (458)
Q Consensus       218 -~~~~~-~~~-----~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d  288 (458)
                       +.... .-|     -..|+++..+  .+-++.++.|+.++.||++++. +...+++|+..|.++.--.....+++|++|
T Consensus        99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qilsG~ED  177 (325)
T KOG0649|consen   99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQILSGAED  177 (325)
T ss_pred             hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcceeecCCC
Confidence             11111 001     2356677665  3455555689999999999876 578999999999999986667789999999


Q ss_pred             CcEEEEeCCCCCCCCcceee---eeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEE
Q 012679          289 NLLHIWDRSMASSNSVTQWL---HRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA  364 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~---~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~  364 (458)
                      |+++|||.++.+......+.   ..+..|. ..|-+++-+.   ..+++|+   ...+.+|+++..++...+.....+..
T Consensus       178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg---Gp~lslwhLrsse~t~vfpipa~v~~  251 (325)
T KOG0649|consen  178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG---GPKLSLWHLRSSESTCVFPIPARVHL  251 (325)
T ss_pred             ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC---CCceeEEeccCCCceEEEecccceeE
Confidence            99999999998773222111   1122232 3466666543   4556653   56799999999999999999999998


Q ss_pred             EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 012679          365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWN  431 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~  431 (458)
                      +.|..+  .+++  +...+.+.-|.+.. .............++..|+-..- +|-.++....+.|+.
T Consensus       252 v~F~~d--~vl~--~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  252 VDFVDD--CVLI--GGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             eeeecc--eEEE--eccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            888654  4444  33667888887743 33333333334455555544333 444455566666653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=7.8e-15  Score=131.54  Aligned_cols=239  Identities=19%  Similarity=0.290  Sum_probs=170.3

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCee-
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHI-  259 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~-  259 (458)
                      ..+..++|++.-..+|++..|-.|++||-.. +....++......|+|++|.   ...|+.|+..| |.+|........ 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            3477899998766789999999999999776 55566665466789999993   57888888865 789976533211 


Q ss_pred             ------------EEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          260 ------------VETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       260 ------------~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                                  +....+| ..|+++.|.+||..+++++- |..|.|||..++....    +.  ....+.+.-+.|+|+
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p----L~--~~glgg~slLkwSPd  249 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP----LI--PKGLGGFSLLKWSPD  249 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc----cc--ccCCCceeeEEEcCC
Confidence                        1222345 68999999999999999885 6789999999887621    22  234567889999999


Q ss_pred             CCcEEEEeCCCCCCeEEEEEC-CCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-----------c-
Q 012679          327 QSNLLATGGGGGDRCIKFWNT-HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-----------M-  393 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-----------~-  393 (458)
                      +..++++.   -|+..++|+. ++..+..-.-..+.|...+|+|+|+.|+.++   .+.-.+|.+..           . 
T Consensus       250 gd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~---sgsp~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  250 GDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC---SGSPRLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             CCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE---cCCceEEEEeecCCCccccCcccc
Confidence            99999875   7999999954 4455555555566899999999999998865   23334443311           0 


Q ss_pred             ---eeeEEEe------C---CCCcEEEEEEcCCCCEEEEEeCCC--------cEEEEecCCCCc
Q 012679          394 ---VKMAELS------G---HTSRVLFMAQSPDGCTVASAAADE--------TLRFWNVFGAPQ  437 (458)
Q Consensus       394 ---~~~~~~~------~---h~~~V~~l~~spdg~~l~s~s~Dg--------~i~iW~~~~~~~  437 (458)
                         ..+..+.      +   -.+.+.+++|.|.|.+||+.-..+        .|.+||......
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~  387 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP  387 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence               1111111      1   136688999999999999875543        366777665443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=4.2e-15  Score=149.36  Aligned_cols=231  Identities=20%  Similarity=0.361  Sum_probs=172.2

Q ss_pred             CCeEEEEcCCEEEEEECC-CC--CeeeEEE---ec----CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          152 SNVLAIALGSTVYLWDAS-DG--TTSELVT---VD----DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~-~~--~~~~~~~---~~----~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      .-+++++.||.|+||+-- ++  +.+.+..   +.    +..+.=.-+.|-....+|++++.-..|+|||......+..+
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence            568999999999999732 22  2211211   11    11111245678886667777777889999999999999998


Q ss_pred             cCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccc--eEeEEEcCCCC-EEEEEECCCcEEE
Q 012679          222 RGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQE--VCGLKWSASGQ-QLASGGNDNLLHI  293 (458)
Q Consensus       222 ~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~--v~~l~~spd~~-~l~sg~~dg~i~i  293 (458)
                      ..+....|++++-   +|+++++|..||.|++||.+....  .+...+.|+..  |..+.+.+.|- .|++|+.||.|++
T Consensus      1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence            8767788888887   479999999999999999987653  67788889887  99999988665 4999999999999


Q ss_pred             EeCCCCCCCCcceeeeeeccc---ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCCe
Q 012679          294 WDRSMASSNSVTQWLHRLEEH---TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQV  362 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~v  362 (458)
                      ||++......    ..++..|   .+.++++..++ ...++|+|+  . +.|+||++.. +.+..+..        ...+
T Consensus      1284 ~DlR~~~~e~----~~~iv~~~~yGs~lTal~VH~-hapiiAsGs--~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1284 LDLRMSSKET----FLTIVAHWEYGSALTALTVHE-HAPIIASGS--A-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             EecccCcccc----cceeeeccccCccceeeeecc-CCCeeeecC--c-ceEEEEecCh-hhhcccccCcccccCcCCCc
Confidence            9999853311    1222223   23589999998 477888876  4 8999999864 43333321        2357


Q ss_pred             EEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          363 CALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      .+++|+|..-.+++  |+.|+.|.||..+..
T Consensus      1355 scL~FHP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ceeeecchhHhhhh--ccCCceEEEeecCCc
Confidence            89999999888887  789999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=9.1e-14  Score=133.19  Aligned_cols=228  Identities=10%  Similarity=0.115  Sum_probs=154.5

Q ss_pred             EEecCCeEEEEeCCC-ce--eeEEecCCCcccEEEEEe--CCCeEEEE-eCCCcEEEEEccCCCee--EEEEcccccceE
Q 012679          200 IGLNNCQVQLWDSTA-NR--QLRTLRGGHRSRVGSLAW--NNHILTTG-GMDGLIINNDVRVRDHI--VETYRGHNQEVC  271 (458)
Q Consensus       200 ~g~~dg~v~iwd~~~-~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg-~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~  271 (458)
                      +...++.|.+||+.+ ++  .+..+.  +......+++  ++++|+++ ..++.|.+|++.....+  .... ......+
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~   83 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT   83 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence            336688999999964 32  444554  3344556666  56777665 45889999999733221  2222 2334577


Q ss_pred             eEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          272 GLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       272 ~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      .+.|+|++++|++++. ++.|.+|++.......  ..+..+. +......++++|++..++++..  .++.|.+||+.+.
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~  158 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDD  158 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCC
Confidence            8999999999888764 8899999986432210  1122222 2334567889999888888776  7899999999874


Q ss_pred             CeeE-------EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC--c--eeeEEEeCCC------CcEEEEEEcC
Q 012679          351 ACLN-------SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS--M--VKMAELSGHT------SRVLFMAQSP  413 (458)
Q Consensus       351 ~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~--~--~~~~~~~~h~------~~V~~l~~sp  413 (458)
                      ..+.       ....+.....+.|+|++++++++.. .++.|.+|++..  +  +.+.++..+.      .....+.++|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            3221       2234556788999999999988753 489999999973  2  3344443221      2234689999


Q ss_pred             CCCEEEEEeC-CCcEEEEecCCCC
Q 012679          414 DGCTVASAAA-DETLRFWNVFGAP  436 (458)
Q Consensus       414 dg~~l~s~s~-Dg~i~iW~~~~~~  436 (458)
                      +|++|+++.. ++.|.+|++....
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCC
Confidence            9999988854 7899999996543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=142.69  Aligned_cols=204  Identities=19%  Similarity=0.360  Sum_probs=155.6

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      +.++.++.||.+.|.+- .+++  -..+..|.+.|.|-.|+|||.-|++++.||.|++|. ++|-...++-. ...+|.|
T Consensus        76 d~~~i~s~DGkf~il~k-~~rV--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q-~~~~v~c  150 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARV--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ-NEESIRC  150 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchh--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh-cCceeEE
Confidence            45888889999999973 4554  345678999999999999999999999999999998 44444334443 7789999


Q ss_pred             EEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          232 LAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       232 l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      ++|.   ++.+++.+  +.+.+=-+..... +-..+.|.+-|.++.|++..+++++||+|-..+|||.....       +
T Consensus       151 ~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-------L  220 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-------L  220 (737)
T ss_pred             EEECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-------c
Confidence            9994   35555544  4566655554443 45678999999999999999999999999999999965432       5


Q ss_pred             eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL  387 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i  387 (458)
                      ..-..|..+|++++|.|+  .+++.++   -+++++=..          ..+.|..+.|++||..+.+  |...|.+.+
T Consensus       221 f~S~~~ey~ITSva~npd--~~~~v~S---~nt~R~~~p----------~~GSifnlsWS~DGTQ~a~--gt~~G~v~~  282 (737)
T KOG1524|consen  221 FTSAAEEYAITSVAFNPE--KDYLLWS---YNTARFSSP----------RVGSIFNLSWSADGTQATC--GTSTGQLIV  282 (737)
T ss_pred             ccCChhccceeeeeeccc--cceeeee---eeeeeecCC----------CccceEEEEEcCCCceeec--cccCceEEE
Confidence            666789999999999997  5666553   345552222          2456889999999999988  546676654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.68  E-value=5.1e-15  Score=134.56  Aligned_cols=247  Identities=20%  Similarity=0.338  Sum_probs=177.8

Q ss_pred             CCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCce---------eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679          183 NGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANR---------QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIIN  250 (458)
Q Consensus       183 ~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~---------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~v  250 (458)
                      ..+|.++.|.++.. .||+|+.|..|+||-+..+.         .+..+.. |...|+++.|+  |.+|++|+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~-H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSR-HTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccC-CcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            46799999998766 99999999999999875432         2233444 99999999996  579999999999999


Q ss_pred             EEcc--------C-----C--CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679          251 NDVR--------V-----R--DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT  315 (458)
Q Consensus       251 wd~~--------~-----~--~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  315 (458)
                      |-..        +     .  -.....+.+|...|..++|+|+++++++++.|+.+++||+..+..      ...+.+|.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l------~~~~~dh~  165 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL------LAILDDHE  165 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee------Eeeccccc
Confidence            9765        2     1  123456778999999999999999999999999999999999987      78889999


Q ss_pred             cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------------------C----CCCeEEEEEcCCC
Q 012679          316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------------------T----GSQVCALLWNKNE  371 (458)
Q Consensus       316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------------------~----~~~v~~~~~s~~~  371 (458)
                      ..|..++|.|-+.++ ++-+  .|+..+.+.+.....+..+.                    +    ..-...++|+|+|
T Consensus       166 ~yvqgvawDpl~qyv-~s~s--~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG  242 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYV-ASKS--SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG  242 (434)
T ss_pred             cccceeecchhhhhh-hhhc--cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence            999999999965544 4443  67777777665544332221                    0    1124567899999


Q ss_pred             CeEEEEecCC-------CCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcC------------------CCCEEEEEeCCC
Q 012679          372 RELLSSHGFT-------QNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSP------------------DGCTVASAAADE  425 (458)
Q Consensus       372 ~~l~~~~g~~-------d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~sp------------------dg~~l~s~s~Dg  425 (458)
                      ..+++-.|.-       -+..++|+-.. .++...+.+...++..+.|+|                  -+-.++.++ -.
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~  321 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KN  321 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cc
Confidence            9998744321       23345555443 234555666666666666665                  122344444 45


Q ss_pred             cEEEEecCCCCcccc
Q 012679          426 TLRFWNVFGAPQVIS  440 (458)
Q Consensus       426 ~i~iW~~~~~~~~~~  440 (458)
                      .|.|||.....+...
T Consensus       322 svyvydtq~~~P~~~  336 (434)
T KOG1009|consen  322 SVYVYDTQTLEPLAV  336 (434)
T ss_pred             eEEEeccccccceEE
Confidence            799999876555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.2e-14  Score=141.05  Aligned_cols=237  Identities=18%  Similarity=0.174  Sum_probs=159.4

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--C
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--N  235 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~  235 (458)
                      ..|++||...+..   ..+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... .. ......+.+|  +
T Consensus       184 ~~l~i~D~~g~~~---~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~-~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDGYNP---QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-AS-FRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCCCCc---eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-cc-CCCCccCceECCC
Confidence            3699999876554   2344456789999999999999988643   4699999988765432 22 3344556778  4


Q ss_pred             CCeE-EEEeCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCc--EEEEeCCCCCCCCcceeee
Q 012679          236 NHIL-TTGGMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNL--LHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       236 ~~~l-~sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~--i~iwd~~~~~~~~~~~~~~  309 (458)
                      ++.| ++.+.+|  .|++||+.++.  ...+..+.......+|+|||+.|+.++. +|.  |+++|+..+..       .
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-------~  329 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-------E  329 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-------E
Confidence            6655 4556665  59999998765  3445555555678899999999987764 444  66667655432       2


Q ss_pred             eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEEE
Q 012679          310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTLW  388 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iw  388 (458)
                      .+..+.......+|+|++..++++........|.+||+.+++.. .+..+.......|+|+|+.++.+... ..+.|.++
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            22223334557899999988877654112346999999888765 33333345667999999998876432 23467888


Q ss_pred             eCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          389 KYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       389 d~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      +... .....+..+.+.+...+|+|
T Consensus       409 ~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        409 STDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ECCC-CceEEcccCCCCCCCCccCC
Confidence            8754 44555655666777788876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=1.8e-14  Score=127.26  Aligned_cols=233  Identities=18%  Similarity=0.267  Sum_probs=175.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      ..+|+|.+|++|+..+|++..+..|.||......   ..+++.. |...|+++.|+  .+.|++++.|..-++|....+.
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            5689999999999999999999999999876554   6677777 99999999996  5789999999999999985443


Q ss_pred             e--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          258 H--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       258 ~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      .  ....+..++..++++.|+|.++.||+|+.-..|.||-++....=-..  .+.-+.+...|.++.|+|+ +-++++|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs--KhikkPirStv~sldWhpn-nVLlaaGs  165 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS--KHIKKPIRSTVTSLDWHPN-NVLLAAGS  165 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh--hhhCCccccceeeeeccCC-cceecccc
Confidence            2  23455678899999999999999999999999999988765531111  1223456788999999994 66777765


Q ss_pred             CCCCCeEEEEECC-----C-------------CCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-e
Q 012679          336 GGGDRCIKFWNTH-----T-------------GACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-K  395 (458)
Q Consensus       336 g~~d~~i~lwd~~-----~-------------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~  395 (458)
                        .|+..+++..-     .             |+.+..+ ..++-+..+.|+|+|..|+-..  .|..+.+-|..... .
T Consensus       166 --~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da~~p~~~  241 (361)
T KOG1523|consen  166 --TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDAAGPSER  241 (361)
T ss_pred             --cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec--CCCceEEeecCCCchh
Confidence              99999998632     1             1223333 3456799999999999998753  78999999887654 3


Q ss_pred             eEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679          396 MAELSGHTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       396 ~~~~~~h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      +..+..-.-+.+++.|-.+.. ++.++.|
T Consensus       242 v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  242 VQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             ccchhhccCCceeeEeecCCc-eeecCCC
Confidence            444433336667777765443 3444454

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.4e-14  Score=139.02  Aligned_cols=250  Identities=15%  Similarity=0.092  Sum_probs=160.3

Q ss_pred             CCeEEEEcC---CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCC
Q 012679          152 SNVLAIALG---STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGH  225 (458)
Q Consensus       152 ~~~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~  225 (458)
                      ..++.+...   ..|+++|......   ..+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.... .. .
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG~~~---~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~  238 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADGQNA---QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-F  238 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCCCCc---eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-C
Confidence            345544433   4688888755443   2333566789999999999999887643   3599999998875433 22 3


Q ss_pred             cccEEEEEe--CCCeEE-EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCC
Q 012679          226 RSRVGSLAW--NNHILT-TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMASS  301 (458)
Q Consensus       226 ~~~v~~l~~--~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~  301 (458)
                      ...+.+.+|  +++.|+ +.+.+|...+|.+.........+..+........|+|||+.|+..+. +|...||.+.....
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence            345567788  466665 56778876666554322224455555556677899999999887664 46666766543221


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                      .     ...+..+.......+|+|++..++++.....+..|.+||+.+++..... .........|+|+++.|+.+.. .
T Consensus       319 ~-----~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~-~  391 (427)
T PRK02889        319 A-----AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQ-Q  391 (427)
T ss_pred             c-----eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEe-c
Confidence            1     1222222233446789999988877654112237999999988755433 3334567899999999988753 2


Q ss_pred             CC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679          382 QN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       382 d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                      .|  .+.+.+. ++.....+..+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            33  3556666 45555566666677777888873

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2e-14  Score=135.17  Aligned_cols=207  Identities=19%  Similarity=0.299  Sum_probs=144.0

Q ss_pred             CCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCC
Q 012679          139 VDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       139 ~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~  214 (458)
                      -...++|+++|+.  .-+++|+.|-.+.|||.-..+...... .+|...|.+++|-|  +.+.+++|..|..|+++|+..
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            3457999999987  346666677899999988766533332 48999999999999  567899999999999999974


Q ss_pred             c----------eeeEEecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEE---------EEcccccceEe
Q 012679          215 N----------RQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVE---------TYRGHNQEVCG  272 (458)
Q Consensus       215 ~----------~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~---------~~~~h~~~v~~  272 (458)
                      .          +..+.+.. |..+|..|+.   .++.+.+++.||+|+-||++....+..         .+...--...+
T Consensus       127 ~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~  205 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC  205 (758)
T ss_pred             ccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence            2          23334444 8888888887   358999999999999999987432111         11122235678


Q ss_pred             EEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCc------------ceeeeeec-ccc-----------cceeEEEecCCC
Q 012679          273 LKWSA-SGQQLASGGNDNLLHIWDRSMASSNSV------------TQWLHRLE-EHT-----------SAVKAIAWCPFQ  327 (458)
Q Consensus       273 l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~------------~~~~~~~~-~h~-----------~~v~~l~~~p~~  327 (458)
                      +..+| +..+||+|+.|-..++||.+.......            ..++..+. +|.           ..++-++|+|+|
T Consensus       206 ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG  285 (758)
T KOG1310|consen  206 LTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG  285 (758)
T ss_pred             eeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence            99999 456889999999999999543221100            00011111 111           125678899999


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      ..+|++-+   .-.|+++|+..+
T Consensus       286 tElLvs~~---gEhVYlfdvn~~  305 (758)
T KOG1310|consen  286 TELLVSWG---GEHVYLFDVNED  305 (758)
T ss_pred             cEEEEeeC---CeEEEEEeecCC
Confidence            99998875   335777776543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.9e-14  Score=142.48  Aligned_cols=209  Identities=15%  Similarity=0.204  Sum_probs=145.9

Q ss_pred             CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCe-eEEEEcccccceEeEEEcC
Q 012679          204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDH-IVETYRGHNQEVCGLKWSA  277 (458)
Q Consensus       204 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~sp  277 (458)
                      +..|.+||..... .+.+.. |...+.+.+|  +++.|+.++.+   ..|++||+.++.. .+..+.+|   ...++|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP  257 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP  257 (429)
T ss_pred             eEEEEEECCCCCC-ceEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC
Confidence            4689999986555 445554 7788999999  46778777643   4699999987653 22333333   44689999


Q ss_pred             CCCEEEEEE-CCCcEEEE--eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-Cee
Q 012679          278 SGQQLASGG-NDNLLHIW--DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACL  353 (458)
Q Consensus       278 d~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~~~  353 (458)
                      ||+.|+.++ .+|.+.||  |+..+.       ...+..+...+...+|+|++..+++++.  .++..++|++... ...
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGA  328 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCe
Confidence            999988765 67876665  554433       3455567777889999999888887765  6677788876432 222


Q ss_pred             EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       354 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ..+....  ....|+|+++.++.+++   ..+.+||+.+++.......+  ....+.|+|||++|+.++.+|.+.+|.+.
T Consensus       329 ~~l~~~~--~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        329 SLVGGRG--YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EEecCCC--CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            3332222  45789999999988643   45777999887654322222  23567899999999999999999988874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=7.4e-15  Score=137.86  Aligned_cols=260  Identities=17%  Similarity=0.296  Sum_probs=178.2

Q ss_pred             CCeEEEEcCCEEEEEECCCCCe--eeEEEecCCCCCEEEEEE-----cCCCCEEEEEecCCeEEEEeCCCceeeEEecC-
Q 012679          152 SNVLAIALGSTVYLWDASDGTT--SELVTVDDENGPVTSVNW-----APDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-  223 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~--~~~~~~~~h~~~V~~v~~-----s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-  223 (458)
                      ..-++-..+..+++|+...+..  .++....-.....+|-+|     .+.+--|.+|...|.|++.|....+..+.+.. 
T Consensus       135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~  214 (636)
T KOG2394|consen  135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE  214 (636)
T ss_pred             CCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhc
Confidence            4456666677889998774321  112111111223445555     34677889999999999999766332222211 


Q ss_pred             --CCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE--EcCCCCEEEEEECCCcEEEEeC
Q 012679          224 --GHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK--WSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       224 --~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~--~spd~~~l~sg~~dg~i~iwd~  296 (458)
                        -....|+|+.|   +...++++-.+|.+++||....           ...+...  ..+++..++....-+       
T Consensus       215 r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~f~i~t~ks-------  276 (636)
T KOG2394|consen  215 RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQFAILTSKS-------  276 (636)
T ss_pred             ccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCeeEEeeeec-------
Confidence              13478999999   5688889999999999987211           1111112  224565555443211       


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEE
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELL  375 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~  375 (458)
                      ....     .++....--.+.|..++|+||+.+|..++   .||.+||+|..+.+.+..++. -+...+++|+|||++|+
T Consensus       277 k~~r-----NPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv  348 (636)
T KOG2394|consen  277 KKTR-----NPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV  348 (636)
T ss_pred             cccC-----CccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence            1110     11333333456899999999876665554   899999999999887765543 46789999999999999


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-----------------------------------CC-----
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-----------------------------------DG-----  415 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-----------------------------------dg-----  415 (458)
                      +  |.+|..|.||.+...+.++.-+||.+.|..++|.|                                   ++     
T Consensus       349 t--GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~  426 (636)
T KOG2394|consen  349 T--GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS  426 (636)
T ss_pred             e--cCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence            9  77999999999999999999999999999999983                                   01     


Q ss_pred             --------CEEEEEeCCCcEEEEecCCCCccc
Q 012679          416 --------CTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       416 --------~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                              -.+.+.+.|-.+.+||+.......
T Consensus       427 ~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  427 FNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cccccceEEEeecccccceEEEEecchhhccc
Confidence                    246788889999999998765444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.6e-15  Score=140.80  Aligned_cols=256  Identities=18%  Similarity=0.277  Sum_probs=200.9

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vw  251 (458)
                      ...+..|.+.|..|.|...|..|++|+.|..|.+||...++....+..+|...|..-.|    +...+++++.||.+++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            45678899999999999999999999999999999999999999999889999988777    34789999999999988


Q ss_pred             EccCCCee--EEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc---ceeEEEecC
Q 012679          252 DVRVRDHI--VETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS---AVKAIAWCP  325 (458)
Q Consensus       252 d~~~~~~~--~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p  325 (458)
                      .+.....+  ...+..|.+.|..++.-|+. .-|.+++.|+.+.-+|++........   ..-..+..   ...+++..|
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~---~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF---VCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee---eeeccCCccceeeeeEecCC
Confidence            76554432  34566799999999999964 56899999999999999887663322   22223333   567899999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCCCCe------eEEE-------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC-
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHTGAC------LNSV-------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP-  391 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~~~~------~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-  391 (458)
                      ...+.+++++  .|..+++||.+.-..      +..+       +....|++++|+.++..+++  .+.|-.|++|.-. 
T Consensus       292 ~nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  292 RNTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSM  367 (559)
T ss_pred             CCccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEecccc
Confidence            9999999987  999999999875321      2222       22346999999999999988  4588999999532 


Q ss_pred             -Cc----------eeeEE-EeCCCCc--EEEEEE-cCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          392 -SM----------VKMAE-LSGHTSR--VLFMAQ-SPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       392 -~~----------~~~~~-~~~h~~~--V~~l~~-spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                       .+          ..+.. ++||...  |.++-| -|...++++|+.-|.|.||+-.+++.+
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence             12          22233 7888743  666664 688999999999999999998766544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.6e-15  Score=136.36  Aligned_cols=200  Identities=18%  Similarity=0.195  Sum_probs=151.4

Q ss_pred             EEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679          230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW  307 (458)
Q Consensus       230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  307 (458)
                      .++++  ++..|++|+.||++++|+...... +.....|..+|.++.|+|||++|++-+.| ..+||+.+++..      
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~------  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA------  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch------
Confidence            44555  679999999999999999765554 45566789999999999999999999999 999999999854      


Q ss_pred             eeeec--ccccceeEEEecCCC--Cc-EEEEeCCCCCCeEEEEECCCCCe------eEEEeCCCCeEEEEEcCCCCeEEE
Q 012679          308 LHRLE--EHTSAVKAIAWCPFQ--SN-LLATGGGGGDRCIKFWNTHTGAC------LNSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       308 ~~~~~--~h~~~v~~l~~~p~~--~~-ll~s~~g~~d~~i~lwd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                      +....  ........+.|+.++  .. ++++. -..-+.|+.||+.....      .+.+.....|.+++.+.+|++++.
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            33222  223345566676653  22 33332 22445677766654322      222334567999999999999999


Q ss_pred             EecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                        |..+|.|.|++..+++.+.-. +.|...|+.+.|+||.+++++.+.|....+-.+.-......
T Consensus       299 --GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~  361 (398)
T KOG0771|consen  299 --GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQL  361 (398)
T ss_pred             --eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccccc
Confidence              668999999999999887765 57999999999999999999999999999998876444433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=2.3e-14  Score=125.24  Aligned_cols=160  Identities=18%  Similarity=0.355  Sum_probs=116.7

Q ss_pred             eEeEEEcCCCCEEEEEEC----------CCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCC
Q 012679          270 VCGLKWSASGQQLASGGN----------DNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      -..+.|+++|.+|+.-..          -+...+|.++.....     ...+. ...++|.+++|+|++..++++. |..
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-----~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~   81 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-----VESIELKKEGPIHDVAWSPNGNEFAVIY-GSM   81 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-----cceeeccCCCceEEEEECcCCCEEEEEE-ccC
Confidence            356889999988865433          133555555433321     22222 2345699999999888776654 347


Q ss_pred             CCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE
Q 012679          339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       339 d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~  417 (458)
                      ++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++ |...|.|.+||..+.+.+.+.. |. .++.++|+|||++
T Consensus        82 ~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~  157 (194)
T PF08662_consen   82 PAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRY  157 (194)
T ss_pred             CcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCE
Confidence            7899999996 77777765 45678999999999999863 3345789999999999988775 33 4789999999999


Q ss_pred             EEEEeC------CCcEEEEecCCCCcccc
Q 012679          418 VASAAA------DETLRFWNVFGAPQVIS  440 (458)
Q Consensus       418 l~s~s~------Dg~i~iW~~~~~~~~~~  440 (458)
                      |++++.      |..++||++.+ ..+.+
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~G-~~l~~  185 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQG-RLLYK  185 (194)
T ss_pred             EEEEEeccceeccccEEEEEecC-eEeEe
Confidence            999874      78999999864 44433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.5e-13  Score=136.55  Aligned_cols=235  Identities=14%  Similarity=0.146  Sum_probs=160.8

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~  236 (458)
                      .|++||......   ..+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+.. +...+...+|  ++
T Consensus       183 ~l~~~d~dg~~~---~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG  257 (435)
T PRK05137        183 RLAIMDQDGANV---RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEEECCCCCCc---EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCC
Confidence            899999876554   334456778999999999999988764   468999999888653 3333 5556777788  46


Q ss_pred             CeE-EEEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679          237 HIL-TTGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       237 ~~l-~sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      +.| ++.+.+|.  |++||+.++.  ...+..+........|+|||+.|+..+. +|  .|++||+..+..       ..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-------~~  328 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-------RR  328 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-------EE
Confidence            655 45666665  7777887654  3455556666778999999999987764 33  688888765432       33


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC----CcEE
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQLT  386 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d----~~i~  386 (458)
                      +..+...+....|+|++..++++.....+..|.+||+.++. ...+.....+....|+|+|+.|+.+.....    ..|.
T Consensus       329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~  407 (435)
T PRK05137        329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY  407 (435)
T ss_pred             eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence            33344556778999999888877642233578899986554 344444445778899999999887643222    3678


Q ss_pred             EEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          387 LWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       387 iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      ++|+..+.. ..+. ..+.+...+|+|
T Consensus       408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        408 TVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             EEECCCCce-EEcc-CCCCccCcccCC
Confidence            888765544 3343 234456667776

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=1.8e-14  Score=127.29  Aligned_cols=205  Identities=20%  Similarity=0.279  Sum_probs=165.4

Q ss_pred             CcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          225 HRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       225 ~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      ...+|+|.+|+  ...++.+.....|.||.....+  ....++..|...|++++|+|..+.|++|+.|..-++|....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45789999995  6889999999999999988766  3567888999999999999999999999999999999985433


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-----EEEeCCCCeEEEEEcCCCCeEE
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-----NSVDTGSQVCALLWNKNERELL  375 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~  375 (458)
                      .   .++...+..++.+.+++.|+| .++.+|+|+  .-+.|.+|-++...--     ......+.|.++.|+|++-.++
T Consensus        89 ~---WkptlvLlRiNrAAt~V~WsP-~enkFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla  162 (361)
T KOG1523|consen   89 T---WKPTLVLLRINRAATCVKWSP-KENKFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA  162 (361)
T ss_pred             e---eccceeEEEeccceeeEeecC-cCceEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence            2   233555667899999999999 477888877  6778888877653321     1223457799999999998888


Q ss_pred             EEecCCCCcEEEEeC------------------CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          376 SSHGFTQNQLTLWKY------------------PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~------------------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      +  |..|+..+||..                  +-++.+.++....+.|..+.|+|+|..|+-.+.|+++.+=|-..+.+
T Consensus       163 a--Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~  240 (361)
T KOG1523|consen  163 A--GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE  240 (361)
T ss_pred             c--cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence            8  778999999874                  22445556655678899999999999999999999999999877754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5e-15  Score=137.48  Aligned_cols=289  Identities=16%  Similarity=0.246  Sum_probs=214.0

Q ss_pred             ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCce
Q 012679          141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      ..++|.+.|+.  ..+++++.|-.|.+||+..++.. +.-..+|...|...+|-|  +...+++++.||.|++=.+....
T Consensus       142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~  220 (559)
T KOG1334|consen  142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG  220 (559)
T ss_pred             CCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence            35788888876  56777888899999999988752 333458999999999998  45678999999999987764332


Q ss_pred             -ee--EEecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCee--EEEEccccc---ceEeEEEcCCC-CEEEE
Q 012679          217 -QL--RTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQ---EVCGLKWSASG-QQLAS  284 (458)
Q Consensus       217 -~~--~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~h~~---~v~~l~~spd~-~~l~s  284 (458)
                       +.  ..+. .|.++|..++.   ++..|.+++.|+.+.-+|++.....  ......+..   ....++..|.. .++++
T Consensus       221 ~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  221 YVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             ceecceecc-cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence             22  2233 49999999988   4689999999999999999876431  122223333   56788888854 48999


Q ss_pred             EECCCcEEEEeCCCCCCCCcceeeeeec------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-------
Q 012679          285 GGNDNLLHIWDRSMASSNSVTQWLHRLE------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-------  351 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-------  351 (458)
                      |+.|..+++||.+..........+.++.      .....|++++++.++..++++-   .|-.|++++-.-+.       
T Consensus       300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~  376 (559)
T KOG1334|consen  300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPS  376 (559)
T ss_pred             CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCC
Confidence            9999999999987655432222222222      3345689999998899999987   68889999543221       


Q ss_pred             -----eeEE-EeCC---CCeEEEE-EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679          352 -----CLNS-VDTG---SQVCALL-WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       352 -----~~~~-~~~~---~~v~~~~-~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~  421 (458)
                           .+.. ++.+   ..|..+- |-|...++++  |.+-|.|.||+-.+++.+.-+++....|+||.-+|--..||++
T Consensus       377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             cchhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence                 1122 2221   2255554 4567777777  7788999999999999999888877799999999999999999


Q ss_pred             eCCCcEEEEecCCCC
Q 012679          422 AADETLRFWNVFGAP  436 (458)
Q Consensus       422 s~Dg~i~iW~~~~~~  436 (458)
                      |-|.-|+||--.+.+
T Consensus       455 Gid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  455 GIDHDVKIWTPLTAE  469 (559)
T ss_pred             CCccceeeecCCccc
Confidence            999999999864443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=6e-13  Score=117.78  Aligned_cols=241  Identities=13%  Similarity=0.171  Sum_probs=167.1

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc--ccEEEEEeCCCeEE-EEeCC------CcEEEEEccC
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR--SRVGSLAWNNHILT-TGGMD------GLIINNDVRV  255 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~--~~v~~l~~~~~~l~-sg~~d------g~i~vwd~~~  255 (458)
                      ...+++|+.|..-+++|..+| .+||+.+--+....... +.  -.+..+-|..++|+ +|+.+      ..|.|||=. 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-
Confidence            355699999999999999887 89998876433222111 11  22333334344443 44433      479999943 


Q ss_pred             CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-CCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      .+.++..+ ....+|.++.+.++  .|++. ..+.|+||..... +.      ++.+.....+=--++.+|....-+.+.
T Consensus        84 k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~------l~~~et~~NPkGlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   84 KERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL------LHVIETRSNPKGLCSLCPTSNKSLLAF  153 (346)
T ss_pred             cCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh------eeeeecccCCCceEeecCCCCceEEEc
Confidence            33334443 35788999999765  45554 4578999998743 32      444433222222345556544444444


Q ss_pred             CCCCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCC-cEEEEeCCCceeeEEEeCCC--CcEEE
Q 012679          335 GGGGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVKMAELSGHT--SRVLF  408 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~-~i~iwd~~~~~~~~~~~~h~--~~V~~  408 (458)
                      -|..-|.|++-|+...+.   .....+.+.|.+++.+.+|..+++++  ..| .|+|||..+++++.+++.-.  ..|.+
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            466789999999987665   55556788999999999999999964  556 58999999999999997443  56999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          409 MAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      |+|||++.+|+.+|.-|+|.|+.+.......+
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~  263 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTED  263 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence            99999999999999999999999987664444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=2.1e-13  Score=139.41  Aligned_cols=255  Identities=14%  Similarity=0.191  Sum_probs=176.1

Q ss_pred             EEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCc-------eeeEEecCCCcccEEEEEe--CCCeEEEEeCC
Q 012679          176 LVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTAN-------RQLRTLRGGHRSRVGSLAW--NNHILTTGGMD  245 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d  245 (458)
                      +..+..|...|..++.+++ +.++++|+.||+|++||...-       +...++.. ...++.++..  +++.+|.++.|
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcCC
Confidence            6777889999999998875 499999999999999997532       12223332 4456666555  78999999999


Q ss_pred             CcEEEEEccCCC--ee----EEEEccc-ccc-eEeEEEcC-CCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679          246 GLIINNDVRVRD--HI----VETYRGH-NQE-VCGLKWSA-SGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT  315 (458)
Q Consensus       246 g~i~vwd~~~~~--~~----~~~~~~h-~~~-v~~l~~sp-d~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  315 (458)
                      |.|.+.++....  ..    ......+ .+. |..-+|.. .+. .|+.+..-+.|..||+++....    +..+.....
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----WRLKNQLRH 1195 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH----HhhhcCccc
Confidence            999999987621  10    1111111 222 33333333 233 6888888999999999887652    123334456


Q ss_pred             cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCC--eEEEEecC-CCCcEEEEeC
Q 012679          316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNER--ELLSSHGF-TQNQLTLWKY  390 (458)
Q Consensus       316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~--~l~~~~g~-~d~~i~iwd~  390 (458)
                      +.|++++.+|.+. .++.|.  ..|.+.+||++-+.++....++  .++..+..+|-..  ...+++|. ..+.|.+|++
T Consensus      1196 G~vTSi~idp~~~-WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCN-WLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             cceeEEEecCCce-EEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            8899999999766 666655  8999999999999999888664  5677777776554  34444355 7889999999


Q ss_pred             CCceeeEEEeCC-------------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          391 PSMVKMAELSGH-------------------TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       391 ~~~~~~~~~~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      .++.....+...                   .-......+..-+..+.+|+.|..|+.||.......
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            988665555322                   111122233334568899999999999999876655

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=3.4e-12  Score=113.08  Aligned_cols=273  Identities=15%  Similarity=0.195  Sum_probs=189.3

Q ss_pred             eeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEE-EecC------CeEEEEeCCCceee
Q 012679          147 LDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNN------CQVQLWDSTANRQL  218 (458)
Q Consensus       147 ~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~-g~~d------g~v~iwd~~~~~~~  218 (458)
                      ++|+. ...++++.+.-.+||+.+--+...........-.+..+-|  ..++||. |+.+      ..|.|||-...+++
T Consensus        11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k~~~i   88 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLKERCI   88 (346)
T ss_pred             EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence            78887 5699999999999999875332111111111122222222  3445544 4333      37999997777888


Q ss_pred             EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEE-ECCCcEEEEe
Q 012679          219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASG-GNDNLLHIWD  295 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd  295 (458)
                      .++.  ...+|.++......|++.-. +.|+||.....-+.+..+.  ......|+++-+.+..+||.= -.-|.|+|-|
T Consensus        89 ~el~--f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   89 IELS--FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             EEEE--eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            8887  78899999999888877754 6899999875544344333  223346666555455566553 3569999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEeCC---CCeEEEEEcCCC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVDTG---SQVCALLWNKNE  371 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~  371 (458)
                      +......    ....+.+|...|.|++.+-+ +.++|+++  ..|+ ||+||..+|+.+..+..+   ..|.+++|+|+.
T Consensus       166 L~~~~~~----~p~~I~AH~s~Iacv~Ln~~-Gt~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  166 LASTKPN----APSIINAHDSDIACVALNLQ-GTLVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             hhhcCcC----CceEEEcccCceeEEEEcCC-ccEEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence            8876542    13567899999999999985 67888876  6665 899999999999999765   469999999999


Q ss_pred             CeEEEEecCCCCcEEEEeCCCce---e---------------------eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMV---K---------------------MAELSGHTSRVLFMAQSPDGCTVASAAADETL  427 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~---~---------------------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i  427 (458)
                      .+|++++  +.|+|.||.+....   .                     +..+.-..+...-++|..+.+.++..+.||+-
T Consensus       239 s~LavsS--dKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy  316 (346)
T KOG2111|consen  239 SWLAVSS--DKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY  316 (346)
T ss_pred             cEEEEEc--CCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence            9999965  89999999875422   1                     11122223455567787776778888889876


Q ss_pred             EEEecC
Q 012679          428 RFWNVF  433 (458)
Q Consensus       428 ~iW~~~  433 (458)
                      +=+.+.
T Consensus       317 ~k~~f~  322 (346)
T KOG2111|consen  317 YKFKFD  322 (346)
T ss_pred             EEEEec
Confidence            655443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=9.2e-16  Score=141.49  Aligned_cols=259  Identities=18%  Similarity=0.213  Sum_probs=199.9

Q ss_pred             eeecc--CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          146 LLDWG--SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       146 ~~~~~--~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .++++  +..++.++.-|.|-.+|..++++  .+.+.- ...|.++.|-.+.+++|++-.. .++||| ..|..++.+. 
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~-y~yvYD-~~GtElHClk-  207 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINV-METVRDVTFLHNEQFFAVAQKK-YVYVYD-NNGTELHCLK-  207 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeeccccee--eeeeeh-hhhhhhhhhhcchHHHHhhhhc-eEEEec-CCCcEEeehh-
Confidence            34554  45699999999999999999987  444432 4569999999999999988554 899999 5677777777 


Q ss_pred             CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          224 GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       224 ~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                       ...+|..+.|=  --+|++++..|.+..-|+.+++. +..+..-.+.+..++-+|-+..+-+|...|+|.+|.......
T Consensus       208 -~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 -RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             -hcCchhhhcccchhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence             55678888884  46788889999999999998874 566666678888899999999999999999999999888766


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                            +..+..|.++|.+|++.+.|.++ ++.|  .|+.++|||+++...+.++........+++|..|...++    .
T Consensus       286 ------LvKiLcH~g~V~siAv~~~G~YM-aTtG--~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~----~  352 (545)
T KOG1272|consen  286 ------LVKILCHRGPVSSIAVDRGGRYM-ATTG--LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALS----Y  352 (545)
T ss_pred             ------HHHHHhcCCCcceEEECCCCcEE-eecc--cccceeEeeeccccccceeecCCCccccccccccceeee----c
Confidence                  78888999999999999965554 5554  899999999999998888888788888888877654443    3


Q ss_pred             CCcEEEEeCC-C--ceeeEEEeCC--CCcEEEEEEcCCCCEEEEEeCCC
Q 012679          382 QNQLTLWKYP-S--MVKMAELSGH--TSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       382 d~~i~iwd~~-~--~~~~~~~~~h--~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      ...+.||.-. .  +..-.-+..|  .+.|..+.|.|-...|-.|-.-|
T Consensus       353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            4578999632 1  1111122223  35799999999655555554444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=7.3e-13  Score=131.57  Aligned_cols=219  Identities=13%  Similarity=0.095  Sum_probs=151.8

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC---CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM---DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.++|.... ..+.+.. |...+.+.+|  +++.|+..+.   +..|++||+.++..  ..+..+.+.+....|+|||+
T Consensus       183 ~l~~~d~dg~-~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        183 RLAIMDQDGA-NVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             EEEEECCCCC-CcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence            7888997544 3445554 7788999999  5677777653   46899999987653  34455666778899999999


Q ss_pred             EEE-EEECCCc--EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          281 QLA-SGGNDNL--LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       281 ~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      .|+ +.+.++.  |++||+.++.       ...+..+........|+|++..++++.....+..|++||+.+++......
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~  331 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF  331 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence            876 4555554  7777887654       34455566667789999999888876542234578899988776554444


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 012679          358 TGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD------ETLRFW  430 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D------g~i~iW  430 (458)
                      ....+....|+|+|+.|+.+... ....|.+||...+.. ..+. ....+....|+|||+.|+..+.+      ..|.+.
T Consensus       332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~  409 (435)
T PRK05137        332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV  409 (435)
T ss_pred             CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence            45567778999999999886532 224688888765443 2332 22346788999999998776543      257777


Q ss_pred             ecCCCCc
Q 012679          431 NVFGAPQ  437 (458)
Q Consensus       431 ~~~~~~~  437 (458)
                      ++.+...
T Consensus       410 dl~g~~~  416 (435)
T PRK05137        410 DLTGRNE  416 (435)
T ss_pred             ECCCCce
Confidence            8765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6.3e-13  Score=131.89  Aligned_cols=216  Identities=17%  Similarity=0.152  Sum_probs=147.9

Q ss_pred             CeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679          205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                      ..|.+||.... ..+.+.. +...+.+.+|  +++.|+..+.+   ..|++||+.++..  ..+..+.+...++.|+|||
T Consensus       184 ~~l~i~D~~g~-~~~~lt~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGY-NPQTILR-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCC-CceEeec-CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCC
Confidence            36899998644 3444554 6778889999  46777777643   4699999987653  2333444555678999999


Q ss_pred             CEEE-EEECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeE
Q 012679          280 QQLA-SGGNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLN  354 (458)
Q Consensus       280 ~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~  354 (458)
                      +.|+ +.+.+|  .|++||+.++..       ..+..+.......+|+|++..++++..  .++  .|+++|+.+++...
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEE
Confidence            9876 445555  599999877643       445555555678899999888887754  333  47777887776544


Q ss_pred             EEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---CcEEEE
Q 012679          355 SVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---ETLRFW  430 (458)
Q Consensus       355 ~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iW  430 (458)
                      ....+.......|+|+|+.++.+.+.. ...|.+||+.+++.. .+. +........|+|||++|+..+.+   +.|.++
T Consensus       331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        331 LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            333344455789999999998865422 236999999877654 333 22344567999999988877653   357777


Q ss_pred             ecCCC
Q 012679          431 NVFGA  435 (458)
Q Consensus       431 ~~~~~  435 (458)
                      ++.+.
T Consensus       409 ~~~g~  413 (433)
T PRK04922        409 STDGR  413 (433)
T ss_pred             ECCCC
Confidence            77543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=6.8e-13  Score=125.67  Aligned_cols=281  Identities=14%  Similarity=0.225  Sum_probs=187.0

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-----ec-----CCeEEEEeC
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-----LN-----NCQVQLWDS  212 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-----~~-----dg~v~iwd~  212 (458)
                      ++....++ +++++.+.++.+.|++..++..  +.+... . .++++.|+|-|.+|.+-     ..     .-.+++|++
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~--~lt~~~-~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKV--VLCVEL-K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCCcE--EEEecc-c-eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            44455554 7899999999999999998863  333332 2 68999999999998762     11     235889999


Q ss_pred             CCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC--EEEE-----
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ--QLAS-----  284 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~--~l~s-----  284 (458)
                      +++.....+....... ++..|. ...|++--..+.+++|++.....+...  -|...|+.+.+||.+.  .+|+     
T Consensus       113 et~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  113 ETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             ccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCC
Confidence            9966555555322222 577775 344444445678999999875543333  3578899999999633  3433     


Q ss_pred             EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---------CCeEEEEECCCCCeeEE
Q 012679          285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---------DRCIKFWNTHTGACLNS  355 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---------d~~i~lwd~~~~~~~~~  355 (458)
                      +|.-..|+||.+.......... ...|  ..+.-..+.|.+-+..||+..+..-         +.++++.++....+...
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a-~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~  266 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVA-NKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP  266 (566)
T ss_pred             CCCCcEEEEeccccccccchhh-hccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe
Confidence            4556789999876332211111 1111  1223346788887777666553222         34688888885566666


Q ss_pred             EeCCCCeEEEEEcCCCCeEEEEecCC------------------------------------------CCcEEEEeCCCc
Q 012679          356 VDTGSQVCALLWNKNERELLSSHGFT------------------------------------------QNQLTLWKYPSM  393 (458)
Q Consensus       356 ~~~~~~v~~~~~s~~~~~l~~~~g~~------------------------------------------d~~i~iwd~~~~  393 (458)
                      +...++|.++.|++++++++++.|+.                                          .|.+.|||+.+.
T Consensus       267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            66677777777777777666655443                                          577788888887


Q ss_pred             eeeEEEeCCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCC
Q 012679          394 VKMAELSGHTSRVLFMAQSPDGCTVASAAA------DETLRFWNVFGAP  436 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~i~iW~~~~~~  436 (458)
                      +++..+.....  +-+.|+|||++++|++.      |+.++||+..+..
T Consensus       347 K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  347 KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            77777765443  45799999999998874      7889999987543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.60  E-value=2.4e-11  Score=116.79  Aligned_cols=275  Identities=13%  Similarity=0.160  Sum_probs=184.6

Q ss_pred             eEEEEcC----CEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----CCeEEEEeCCCc--e--eeE
Q 012679          154 VLAIALG----STVYLWDA--SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----NCQVQLWDSTAN--R--QLR  219 (458)
Q Consensus       154 ~la~~~d----~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----dg~v~iwd~~~~--~--~~~  219 (458)
                      +++++..    +.|++|++  +++++..+.... .......++++|++++|.+...    +|.|..|++...  +  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4555555    68998887  677766555543 2456788999999999999876    568999987764  2  333


Q ss_pred             EecCCCcccEEEEEe--CCCeEEEEe-CCCcEEEEEccCCCeeEEE--Ec-----------ccccceEeEEEcCCCCEEE
Q 012679          220 TLRGGHRSRVGSLAW--NNHILTTGG-MDGLIINNDVRVRDHIVET--YR-----------GHNQEVCGLKWSASGQQLA  283 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~--~~-----------~h~~~v~~l~~spd~~~l~  283 (458)
                      .... .......++.  ++.+|+++. .+|.|.++++.....+...  ..           .......++.|+|++++++
T Consensus        81 ~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~  159 (345)
T PF10282_consen   81 SVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY  159 (345)
T ss_dssp             EEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred             eecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence            3332 2334455666  577777775 5899999999875543222  11           1234567899999999888


Q ss_pred             EEEC-CCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCC--eeEEEe
Q 012679          284 SGGN-DNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGA--CLNSVD  357 (458)
Q Consensus       284 sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~--~~~~~~  357 (458)
                      +... ...|.+|++.......  .....+. .....-+.++|+|++..++++..  .++.|.++++.  ++.  .+..+.
T Consensus       160 v~dlG~D~v~~~~~~~~~~~l--~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  160 VPDLGADRVYVYDIDDDTGKL--TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             EEETTTTEEEEEEE-TTS-TE--EEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEecCCCEEEEEEEeCCCceE--EEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEee
Confidence            7653 4579999987765311  1112221 33456789999999999888876  88999999988  443  233332


Q ss_pred             C-------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC----CceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCC
Q 012679          358 T-------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP----SMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADE  425 (458)
Q Consensus       358 ~-------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~----~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg  425 (458)
                      .       ......+.++|++++|+++.. ..+.|.+|++.    ..+.+..+.........++++|+|++|+++. .++
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             eccccccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence            2       125788999999999999754 57899999993    2344555544445588999999999998887 467


Q ss_pred             cEEEEecCCC
Q 012679          426 TLRFWNVFGA  435 (458)
Q Consensus       426 ~i~iW~~~~~  435 (458)
                      .|.+|++...
T Consensus       315 ~v~vf~~d~~  324 (345)
T PF10282_consen  315 TVSVFDIDPD  324 (345)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEEEeCC
Confidence            8999988643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.6e-13  Score=124.40  Aligned_cols=254  Identities=15%  Similarity=0.134  Sum_probs=181.4

Q ss_pred             CCCCEEEEEEcCCCC--EEEEEecCCeEEEEeCCCceeeEEe-----cCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679          182 ENGPVTSVNWAPDGR--HIAIGLNNCQVQLWDSTANRQLRTL-----RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       182 h~~~V~~v~~s~~g~--~la~g~~dg~v~iwd~~~~~~~~~~-----~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~  254 (458)
                      ....|+.++|.-+++  .|...+.+-.+..+++........+     .......|..++.....|++|-.+|.+.+|...
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence            345677788876543  3444435656777776665544442     112556777777777888899999999999988


Q ss_pred             CCC---eeEEEEcccccceEeEEEcCCCC-EEEEEECC--CcEEEEeCCCCCCCCcceeee--eec-ccccceeEEEecC
Q 012679          255 VRD---HIVETYRGHNQEVCGLKWSASGQ-QLASGGND--NLLHIWDRSMASSNSVTQWLH--RLE-EHTSAVKAIAWCP  325 (458)
Q Consensus       255 ~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~--~~~-~h~~~v~~l~~~p  325 (458)
                      .+.   .....+..+ ..+..+.-++... .+|+||..  +.+.|||+.........+.+.  .+. .-.-.++++.|-+
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            543   112223222 4566666666544 55669988  899999998774311100000  000 0122456788877


Q ss_pred             C-CCcEEEEeCCCCCCeEEEEECCCCC-eeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE-EeC
Q 012679          326 F-QSNLLATGGGGGDRCIKFWNTHTGA-CLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSG  401 (458)
Q Consensus       326 ~-~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~-~~~  401 (458)
                      . -.+.|+++.  .-+.+++||.+.+. ++.+++. ...++++...|.++.+++  |...+.+..||.+.+..... +.+
T Consensus       213 g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~kg  288 (412)
T KOG3881|consen  213 GSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLKG  288 (412)
T ss_pred             CCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccCC
Confidence            3 167778876  78999999999864 6777765 578999999999999999  67899999999999998877 889


Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          402 HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       402 h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      -.+.|.+|..+|.+++|+++|-|..|||+|+.+...+.+
T Consensus       289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            999999999999999999999999999999998555444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=6.8e-15  Score=135.83  Aligned_cols=229  Identities=11%  Similarity=0.244  Sum_probs=187.0

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETY  263 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  263 (458)
                      .-+.+.++.+|++|+.|+..|.|..+|..+++....+.  -...|.++.| ++..+++......++|||-..-+  +..+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE--lHCl  206 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE--LHCL  206 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE--Eeeh
Confidence            35789999999999999999999999999999988887  5677899999 56666666677889999965322  3444


Q ss_pred             cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679          264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK  343 (458)
Q Consensus       264 ~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~  343 (458)
                      +.| ..|..+.|-|..-+|++++..|.++.-|+..++.      +..+....+.+..++-+|. +.++-+|.  ..|+|.
T Consensus       207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl------Va~~~t~~G~~~vm~qNP~-NaVih~Gh--snGtVS  276 (545)
T KOG1272|consen  207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL------VASIRTGAGRTDVMKQNPY-NAVIHLGH--SNGTVS  276 (545)
T ss_pred             hhc-CchhhhcccchhheeeecccCCceEEEeechhhh------hHHHHccCCccchhhcCCc-cceEEEcC--CCceEE
Confidence            443 5688999999999999999999999999999987      6677777788889999995 55666665  899999


Q ss_pred             EEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          344 FWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       344 lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      +|.....+++..+ .+.++|.++++.++|.++++++  .|..++|||++....+.++.. ..+...+++|..|  ++.++
T Consensus       277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG--~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~  351 (545)
T KOG1272|consen  277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG--LDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALS  351 (545)
T ss_pred             ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc--cccceeEeeeccccccceeec-CCCcccccccccc--ceeee
Confidence            9999988877655 5678999999999999999963  899999999999888777754 4566788998776  33345


Q ss_pred             CCCcEEEEec
Q 012679          423 ADETLRFWNV  432 (458)
Q Consensus       423 ~Dg~i~iW~~  432 (458)
                      ....|.||.=
T Consensus       352 ~G~~v~iw~d  361 (545)
T KOG1272|consen  352 YGDHVQIWKD  361 (545)
T ss_pred             cCCeeeeehh
Confidence            5568999963

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=2.4e-14  Score=131.04  Aligned_cols=192  Identities=16%  Similarity=0.199  Sum_probs=137.3

Q ss_pred             eeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec-
Q 012679          146 LLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR-  222 (458)
Q Consensus       146 ~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~-  222 (458)
                      +++++.  ..+.+++.||+++||+..+-..  +.....|...|.++.|+|||+.|++-+.| ..+||+++++..+.... 
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            455554  5688888999999999776554  55666788999999999999999999999 89999999997776655 


Q ss_pred             CCCcccEEEEEe--CC---Ce--EEEEeCCCcEEEEEccCCCe----eEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679          223 GGHRSRVGSLAW--NN---HI--LTTGGMDGLIINNDVRVRDH----IVETYRGHNQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       223 ~~~~~~v~~l~~--~~---~~--l~sg~~dg~i~vwd~~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                      .........+.|  ++   .+  ++.....+.|..||+.....    ...+...-...|.+++.++||+++|.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            223334555666  22   22  22334456677766643322    111112223469999999999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      -|++....+..     ...-+.|...|+.+.|+|+...+.-+.   .|..+.+.-+.
T Consensus       306 ai~~~~~lq~~-----~~vk~aH~~~VT~ltF~Pdsr~~~svS---s~~~~~v~~l~  354 (398)
T KOG0771|consen  306 AIYDAKSLQRL-----QYVKEAHLGFVTGLTFSPDSRYLASVS---SDNEAAVTKLA  354 (398)
T ss_pred             EEEEeceeeee-----EeehhhheeeeeeEEEcCCcCcccccc---cCCceeEEEEe
Confidence            99998876652     233457999999999999876666543   56666665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1.8e-13  Score=124.08  Aligned_cols=215  Identities=15%  Similarity=0.203  Sum_probs=171.1

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCC--eeeEEEecCCCCCEEEEEEcCCCC-EEEEEecC--CeEEEEeCCCceeeEEecCC
Q 012679          150 GSSNVLAIALGSTVYLWDASDGT--TSELVTVDDENGPVTSVNWAPDGR-HIAIGLNN--CQVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~--~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~d--g~v~iwd~~~~~~~~~~~~~  224 (458)
                      ....++++-.+|.+.+|..+.+.  -.++..+..+ ..+..|.-++... ++|+|+..  ..+.|||+++.+.+..-+..
T Consensus       114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            34678889999999999988544  2224444433 4577888777544 55668888  78999999988766554321


Q ss_pred             --------CcccEEEEEe-C---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          225 --------HRSRVGSLAW-N---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       225 --------~~~~v~~l~~-~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                              -+-.++++.| .   ...|++++.-+.+++||.+.+..++..+.--..+++++...|+++++++|..-|.+.
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA  272 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence                    2234566777 2   478999999999999999999888888888889999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      .||++.+...     ...+.+..+.|.+|..+| +..+++++|  -|+.+||+|+.+.+++..+...+.++.+.+.++-+
T Consensus       273 ~FD~r~~kl~-----g~~~kg~tGsirsih~hp-~~~~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  273 KFDLRGGKLL-----GCGLKGITGSIRSIHCHP-THPVLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             eecccCceee-----ccccCCccCCcceEEEcC-CCceEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence            9999988762     334788899999999999 466778877  99999999999988888888888888888876544


Q ss_pred             e
Q 012679          373 E  373 (458)
Q Consensus       373 ~  373 (458)
                      .
T Consensus       345 ~  345 (412)
T KOG3881|consen  345 I  345 (412)
T ss_pred             c
Confidence            3

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=6e-12  Score=124.42  Aligned_cols=216  Identities=14%  Similarity=0.081  Sum_probs=145.9

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.+||...... +.+.. +...+.+.+|  +|+.|+..+   .+..|++||+.+++.  ..+....+.+..+.|+|||+
T Consensus       180 ~l~~~d~dg~~~-~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eEEEEcCCCCCC-EEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence            689999875544 33433 6678888999  467777553   245799999987653  22333334455789999999


Q ss_pred             EEEEE-ECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEE
Q 012679          281 QLASG-GNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNS  355 (458)
Q Consensus       281 ~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~  355 (458)
                      .|+.. +.+|  .|++||+.++..       ..+..+...+....|+|++..++++..  .++  .|.++|+.+++....
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~l  326 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRI  326 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCE-------EEccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEe
Confidence            88865 4444  588999877643       344444556788999999888877754  333  456667777765443


Q ss_pred             EeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEe
Q 012679          356 VDTGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET---LRFWN  431 (458)
Q Consensus       356 ~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~---i~iW~  431 (458)
                      ...........|+|+|+.++.+... ....|.+||+.+++.. .+... .......|+|||++|+.++.|+.   +.+++
T Consensus       327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            3334456678999999999876432 2246888999877643 33321 22346789999999999998865   67777


Q ss_pred             cCCCC
Q 012679          432 VFGAP  436 (458)
Q Consensus       432 ~~~~~  436 (458)
                      +.+..
T Consensus       405 ~~G~~  409 (429)
T PRK03629        405 TDGRF  409 (429)
T ss_pred             CCCCC
Confidence            75443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=2e-13  Score=121.15  Aligned_cols=268  Identities=17%  Similarity=0.339  Sum_probs=174.6

Q ss_pred             ceeeccCC--C-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEE
Q 012679          145 NLLDWGSS--N-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       145 ~~~~~~~~--~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .-+.|.-+  . +.+...++.|.+|++...+.  .+.+.....++.++.|||||+.| .+..-+-.|.||.+.+.+....
T Consensus        52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~  129 (447)
T KOG4497|consen   52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL  129 (447)
T ss_pred             hheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence            34566542  3 44445578999999998877  67777778899999999999655 4555678999999988776544


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      -..  ...+..++|  ++.+.+..++-...-.+.+...+  .+.+.+.-.+...+++.|+|||+.||+         ||.
T Consensus       130 ~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~  198 (447)
T KOG4497|consen  130 PHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDN  198 (447)
T ss_pred             ccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecc
Confidence            332  233455666  56777766653211111111000  122334444566788899998877664         442


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE---------------------
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS---------------------  355 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~---------------------  355 (458)
                      --.-.      +..+ ...-.+..++|+| .+.+++.|+  .|+.+|+.|--+.+....                     
T Consensus       199 ~Leyk------v~aY-e~~lG~k~v~wsP-~~qflavGs--yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  199 VLEYK------VYAY-ERGLGLKFVEWSP-CNQFLAVGS--YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS  268 (447)
T ss_pred             hhhhe------eeee-eeccceeEEEecc-ccceEEeec--cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence            11110      1111 1234577888888 466777766  888887766433221100                     


Q ss_pred             ---------------------------------------Ee-------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          356 ---------------------------------------VD-------TGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       356 ---------------------------------------~~-------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                                                             ++       ....+.-++|++|..++++.....-+.+-+||
T Consensus       269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wd  348 (447)
T KOG4497|consen  269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWD  348 (447)
T ss_pred             hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEe
Confidence                                                   00       01125678999999999987665667899999


Q ss_pred             CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +...+.-..+. ...+|....|.|....|+.+.....+++|......
T Consensus       349 lq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  349 LQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             chhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            98877655553 45789999999998888888888889999887643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=7.4e-13  Score=115.78  Aligned_cols=142  Identities=15%  Similarity=0.312  Sum_probs=105.8

Q ss_pred             CcEEEEEccCCCeeEEEEcc-cccceEeEEEcCCCCEEEEE--ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679          246 GLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASG--GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      |...+|.++........+.- ..++|.+++|+|+|+.||+.  ..++.|.+||++. ..      +..+  +...+..+.
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~------i~~~--~~~~~n~i~  107 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KK------IFSF--GTQPRNTIS  107 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cE------eEee--cCCCceEEE
Confidence            34556666544433444432 34579999999999998655  3567999999962 22      4454  356778999


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC----CCCcEEEEeCCCceeeEE
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF----TQNQLTLWKYPSMVKMAE  398 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~----~d~~i~iwd~~~~~~~~~  398 (458)
                      |+|+|..++++|.|...|.|.+||.++.+.+....+. .++.++|+|+|++++++...    .|+.++||++. |+.+.+
T Consensus       108 wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  108 WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            9999888888776667789999999999988887655 47899999999999998643    48899999984 555544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=5.3e-13  Score=126.49  Aligned_cols=246  Identities=16%  Similarity=0.227  Sum_probs=178.7

Q ss_pred             CCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEE--ec--------------------------C------CC
Q 012679          181 DENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRT--LR--------------------------G------GH  225 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~--~~--------------------------~------~~  225 (458)
                      ++...-+.|..+|||+|+ |+|...-.|++||+........  +.                          .      .+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            456778899999999986 6677888999999875432111  00                          0      01


Q ss_pred             cccEE----EEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679          226 RSRVG----SLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       226 ~~~v~----~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      .-+|.    .++++  ..-|++++....|+-++++.+.. +..+....+.++++..++-..+|++|+.+|.|..||.+..
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k  207 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK  207 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence            11222    22222  23355556666788888886653 5677777789999999999999999999999999999887


Q ss_pred             CCCCcceeeeeeccccc-----ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCC--
Q 012679          300 SSNSVTQWLHRLEEHTS-----AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKN--  370 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~--  370 (458)
                      ...........+..|.+     .|+++.|+.+ +.-+++|.  .+|.+.|||+++.+++..-++.  .+|..+.|.+.  
T Consensus       208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhheeeecccccCCCccccccCcceEEEecCC-ceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            65332222223333433     4999999986 45556654  9999999999999998877764  46889999776  


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      .+.+++.   +...++|||-.+++....+.. +..+..+++-|++-+++++-.++.+..|-+..
T Consensus       285 q~~v~S~---Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  285 QNKVVSM---DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             CceEEec---chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            3445542   577899999999999988874 44599999999999999999988887776643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=7e-13  Score=118.41  Aligned_cols=245  Identities=13%  Similarity=0.254  Sum_probs=177.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----eeEEecCCC------------cccEEEEEe----CCCeEEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGH------------RSRVGSLAW----NNHILTT  241 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~~v~~l~~----~~~~l~s  241 (458)
                      .+-|.+|.|..+|.+||+|..+|.|.++.-....     ....++. |            ...|..+.|    +...++.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqs-hepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQS-HEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeec-cCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            4568999999999999999999999999643322     1222222 3            346778888    3567888


Q ss_pred             EeCCCcEEEEEccCCCee----------------------------------EEE-EcccccceEeEEEcCCCCEEEEEE
Q 012679          242 GGMDGLIINNDVRVRDHI----------------------------------VET-YRGHNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       242 g~~dg~i~vwd~~~~~~~----------------------------------~~~-~~~h~~~v~~l~~spd~~~l~sg~  286 (458)
                      .+.|.+|++|.++.....                                  .+. -.+|...|+++.++.|+..++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            889999999987643210                                  011 13688889999999999988887 


Q ss_pred             CCCcEEEEeCCCCCCCCcceeeeeecc-----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE----Ee
Q 012679          287 NDNLLHIWDRSMASSNSVTQWLHRLEE-----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS----VD  357 (458)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~----~~  357 (458)
                      .|-.|.+|++........   +..++.     -..-|++..|+|...++++-.+  ..|+|++-|++.......    +.
T Consensus       183 DdLRINLWnlei~d~sFn---IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFN---IVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             cceeeeeccccccCCcee---EEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhc
Confidence            568899999876544211   222332     3456899999999888888766  899999999985432111    10


Q ss_pred             -------------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeCCC------------CcE---EE
Q 012679          358 -------------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSGHT------------SRV---LF  408 (458)
Q Consensus       358 -------------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h~------------~~V---~~  408 (458)
                                   .-+.|..+.|+++|+++++-   +-.+|++||+. ..+++.++.-|.            ..|   ..
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsR---Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSR---DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEe---ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence                         11347889999999999983   33789999994 566677766553            112   45


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          409 MAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      ++|+-++.+++||+....++++++..+..
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             EEEcCCcceEecccccceEEEecCCCCcc
Confidence            78999999999999999999999765543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=6e-12  Score=124.80  Aligned_cols=234  Identities=16%  Similarity=0.145  Sum_probs=150.0

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~  236 (458)
                      .|+++|...+....   +..+...+.+.+|+|||++|+.+...   ..|++||+.+++......  +...+.+++|  ++
T Consensus       171 ~l~~~d~~g~~~~~---l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg  245 (417)
T TIGR02800       171 ELQVADYDGANPQT---ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDG  245 (417)
T ss_pred             eEEEEcCCCCCCEE---eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCC
Confidence            68999987655433   33456678999999999999988654   479999999886543332  4455666788  45


Q ss_pred             CeEE-EEeCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-C--cEEEEeCCCCCCCCcceeeee
Q 012679          237 HILT-TGGMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-N--LLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       237 ~~l~-sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      +.|+ +.+.++  .|++||+.++.  ...+..+........|+|||+.|+..+.. +  .|+++|+..+..       ..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------~~  316 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------RR  316 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EE
Confidence            6554 455554  58888887654  34444455555678999999998876653 3  577788765432       33


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC-CcEEEEe
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ-NQLTLWK  389 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d-~~i~iwd  389 (458)
                      +..+...+...+|+|++..++++........|.+||+.++... .+..........|+|+++.|+.+..... ..+.+.+
T Consensus       317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence            4444566778899999888877764111237899999886543 3332333456689999999887653221 2355555


Q ss_pred             CCCceeeEEEeCCCCcEEEEEE
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      .. +.....+..+.+.+..++|
T Consensus       396 ~~-g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       396 TD-GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CC-CceeeECCCCCCCcCCCCC
Confidence            33 3344444433444444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.1e-11  Score=123.27  Aligned_cols=236  Identities=16%  Similarity=0.119  Sum_probs=151.5

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~  236 (458)
                      .|.++|.+.+...   .+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.... .. ....+....|  ++
T Consensus       180 ~l~~~d~~g~~~~---~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~-~~g~~~~~~~SpDG  254 (430)
T PRK00178        180 TLQRSDYDGARAV---TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TN-FEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEEECCCCCCce---EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cC-CCCCcCCeEECCCC
Confidence            5888888766542   333456789999999999999887644   3699999988865432 22 3334456778  46


Q ss_pred             CeEE-EEeCCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679          237 HILT-TGGMDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       237 ~~l~-sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      +.|+ +.+.+|  .|+++|+.++..  ..+..+........|+|||+.|+..+. +|  .|+++|+..+..       ..
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-------~~  325 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-------ER  325 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EE
Confidence            6665 555555  688889887652  345555556677899999998877664 33  577778766543       11


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEe
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWK  389 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd  389 (458)
                      +..........+|+|++..++++........|.+||+.+++... +..........|+|+|+.++.+.... ...|.+++
T Consensus       326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~  404 (430)
T PRK00178        326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVS  404 (430)
T ss_pred             eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            11112233457899999888877641122368899999887543 32222334568999999998765321 23466777


Q ss_pred             CCCceeeEEEeCCCCcEEEEEEcC
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      ... .....+..+.+.+...+|+|
T Consensus       405 ~~g-~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        405 ING-RVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCC-CceEECcCCCCCcCCCccCC
Confidence            643 33334544555667777776

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.53  E-value=1.1e-11  Score=119.10  Aligned_cols=245  Identities=13%  Similarity=0.142  Sum_probs=160.3

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCC------
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGG------  224 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~------  224 (458)
                      ..+++.+.||.|.++|+.+++.  +.++.. .....++++++||++++++. ..+.+.|+|.++.+.++.+..+      
T Consensus        49 r~~yv~~rdg~vsviD~~~~~~--v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~  125 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATGKV--VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG  125 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSSSE--EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred             CEEEEEcCCCeEEEEECCcccE--EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence            4577778899999999999987  555543 34578999999999998875 6889999999999999887642      


Q ss_pred             CcccEEEEEe--CCC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCC
Q 012679          225 HRSRVGSLAW--NNH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMAS  300 (458)
Q Consensus       225 ~~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~  300 (458)
                      ...++..+..  ... ++++.-..+.|.+.|......+...............|+|++++++.+ ..++.|-++|..+..
T Consensus       126 ~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  126 PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence            2346666655  234 455555568898889876654443443445567788999999988665 446677788866543


Q ss_pred             CCCc-------------------------------------------------ceeeeeecccccceeEEEecCCCCcEE
Q 012679          301 SNSV-------------------------------------------------TQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       301 ~~~~-------------------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      ....                                                 .+.+.++...... ..+..+|++.++.
T Consensus       206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vw  284 (369)
T PF02239_consen  206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVW  284 (369)
T ss_dssp             EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEE
T ss_pred             EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEE
Confidence            2100                                                 0001112222222 4567789888888


Q ss_pred             EE-eCCCCCCeEEEEECCCCCeeEEEeCCC--CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679          332 AT-GGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       332 ~s-~~g~~d~~i~lwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      +. ..+...+.|.++|.++.+.+.++....  .+..+.|+++|+++.++....++.|.|||..+.+.+.++.
T Consensus       285 vd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  285 VDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             eeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            76 112256899999999998888876543  4999999999999999887777799999999999998886

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=1.8e-13  Score=121.45  Aligned_cols=220  Identities=17%  Similarity=0.231  Sum_probs=155.4

Q ss_pred             eeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCC
Q 012679          147 LDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       147 ~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~  224 (458)
                      ..+++ ++.+|...+..+.|-|.++-++.+++..   -+.|.-+.|..|..+++++ ..++.|++|++...+-...+.. 
T Consensus        14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde-   89 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE-   89 (447)
T ss_pred             eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH---HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc-
Confidence            34555 6788888888999999988877555544   3468889999988776554 6788999999999998888887 


Q ss_pred             CcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          225 HRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       225 ~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      ..+.+.+++|+  | ++|.+...+-.|.+|.+.+........  ....+.+++|+|||++.+.++.-.....+.+...+.
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence            77889999994  4 678888889999999998766432222  234568899999999999888642222222211110


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                         ...+..+.-.+-..+.+.|+|+|..+.            +||.--.-.+..+..+-.+..+.|+|.++++++  |+.
T Consensus       168 ---W~ll~~f~~dT~DltgieWsPdg~~la------------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflav--Gsy  230 (447)
T KOG4497|consen  168 ---WILLKEFKLDTIDLTGIEWSPDGNWLA------------VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAV--GSY  230 (447)
T ss_pred             ---HHHHHhcCCCcccccCceECCCCcEEE------------EecchhhheeeeeeeccceeEEEeccccceEEe--ecc
Confidence               111334444555678899999755443            454333333334455566788899999999998  778


Q ss_pred             CCcEEEEe
Q 012679          382 QNQLTLWK  389 (458)
Q Consensus       382 d~~i~iwd  389 (458)
                      |+.++|.+
T Consensus       231 D~~lrvln  238 (447)
T KOG4497|consen  231 DQMLRVLN  238 (447)
T ss_pred             chhhhhhc
Confidence            98888754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=1.7e-13  Score=128.80  Aligned_cols=166  Identities=20%  Similarity=0.350  Sum_probs=124.2

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecC--CCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC--------------
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDD--ENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA--------------  214 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~--h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~--------------  214 (458)
                      -.++.+-.-|.|++.|....+...++....  ....|+|+.|-| +...++++-.+|.+++||...              
T Consensus       186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~  265 (636)
T KOG2394|consen  186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD  265 (636)
T ss_pred             cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence            347777778899998876644433332221  246899999999 445677788999999997531              


Q ss_pred             ceeeE--------------EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679          215 NRQLR--------------TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS  278 (458)
Q Consensus       215 ~~~~~--------------~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  278 (458)
                      +....              .+.. -...|..++|  ++.+|++.+.||.++|+|..+.. ++..++..-+...|++||||
T Consensus       266 ~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  266 GDQFAILTSKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             CCeeEEeeeeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCC
Confidence            11111              1111 2235666666  58999999999999999998654 35555666678999999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      |++|++|++|..|.||.+...+.      +..-++|...|..++|.|
T Consensus       344 GKyIvtGGEDDLVtVwSf~erRV------VARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERRV------VARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccEEEecCCcceEEEEEeccceE------EEeccccccceeeEeecc
Confidence            99999999999999999988776      788889999999999984

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=2.6e-13  Score=131.96  Aligned_cols=284  Identities=17%  Similarity=0.271  Sum_probs=202.4

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCC--ceee
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTA--NRQL  218 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~--~~~~  218 (458)
                      ++.+..++ ++-++.+....+++.|+...-..+..-.....-.|-.+.|+|.  -.+-++......-.+|++..  ...+
T Consensus        27 ~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI  106 (1081)
T KOG0309|consen   27 FNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI  106 (1081)
T ss_pred             ccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence            44444444 3334444455677778775433222222222345788899874  34556666666788998753  3344


Q ss_pred             EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          219 RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      .-+.-+|...|+.+.|+   +..+++++.|..+..||++.....+.....-......++|+.....+.+.+..+.|.+||
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd  186 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD  186 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence            44444599999999995   589999999999999999998877776666566677899998666666667888999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEeCCCCeEEEEEcCCCCe
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVCALLWNKNERE  373 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~~~~v~~~~~s~~~~~  373 (458)
                      .+.+..+     +..+++|...|..++|.......+.+++  .|++|++||....  +....+.+..++..-.+-|-|.-
T Consensus       187 ~r~gs~p-----l~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  187 LRKGSTP-----LCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             ccCCCcc-----eEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCce
Confidence            9988753     7888899999999999887666777766  9999999998754  45566677788888888887665


Q ss_pred             EEEEecCCCCcEEEEeC---------C-CceeeEEEeCCCCcEEEEEEcCCC----------CEEEEEeCCCcEEEEecC
Q 012679          374 LLSSHGFTQNQLTLWKY---------P-SMVKMAELSGHTSRVLFMAQSPDG----------CTVASAAADETLRFWNVF  433 (458)
Q Consensus       374 l~~~~g~~d~~i~iwd~---------~-~~~~~~~~~~h~~~V~~l~~spdg----------~~l~s~s~Dg~i~iW~~~  433 (458)
                      .++.-...++.+.+++.         . ..++++++.||++.|....|-..+          -.|+|=+.|.+|++|-+.
T Consensus       260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            54422222334444433         2 246789999999999877775432          268999999999999986


Q ss_pred             C
Q 012679          434 G  434 (458)
Q Consensus       434 ~  434 (458)
                      +
T Consensus       340 ~  340 (1081)
T KOG0309|consen  340 S  340 (1081)
T ss_pred             H
Confidence            4

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.9e-11  Score=121.02  Aligned_cols=214  Identities=16%  Similarity=0.165  Sum_probs=138.3

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.++|.. +...+.+.. +...+.+.+|  +++.|+..+.+   ..|++||+.++..  ..+....+.+....|+|||+
T Consensus       177 ~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        177 QLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             EEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            57777764 444444444 7778889999  46777776543   3599999987754  23333445567899999999


Q ss_pred             EEE-EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEE--ECCCCCeeEEEe
Q 012679          281 QLA-SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW--NTHTGACLNSVD  357 (458)
Q Consensus       281 ~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw--d~~~~~~~~~~~  357 (458)
                      .|+ +.+.+|...||.+......     ...+..+........|+|++..+++++.  .++...+|  +..++.......
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~  325 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTF  325 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-----cEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEec
Confidence            887 4567887666655432111     3445555556677899999988887654  34555555  555555433322


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC-c--EEEEec
Q 012679          358 TGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE-T--LRFWNV  432 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-~--i~iW~~  432 (458)
                      .+.......|+|+|+.++.++... ...|.+||+.+++... +..+ .......|+|||+.|+.++.++ .  +.+-++
T Consensus       326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            333345688999999998764321 2369999998876543 3322 2346789999999998877654 3  444445

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.49  E-value=3.4e-13  Score=116.25  Aligned_cols=157  Identities=22%  Similarity=0.383  Sum_probs=119.9

Q ss_pred             CCCCEEEEEEcC-CCC--EEEEEecCCeEEEEeCCCceeeEEec---------CCCcccEEEEEeCC--CeEEEEeCCCc
Q 012679          182 ENGPVTSVNWAP-DGR--HIAIGLNNCQVQLWDSTANRQLRTLR---------GGHRSRVGSLAWNN--HILTTGGMDGL  247 (458)
Q Consensus       182 h~~~V~~v~~s~-~g~--~la~g~~dg~v~iwd~~~~~~~~~~~---------~~~~~~v~~l~~~~--~~l~sg~~dg~  247 (458)
                      ..+.+.|..|.. ++.  +|++|..+|.|.+||+.++..+-.+.         ..|..+|.++.++.  ..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            356788877654 333  56778899999999999984433332         13899999999963  44567777778


Q ss_pred             EEEEEccCCCe--eE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679          248 IINNDVRVRDH--IV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC  324 (458)
Q Consensus       248 i~vwd~~~~~~--~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  324 (458)
                      +..|.+.....  .+ ..+.-..-.|..+.+-||++.+|++|.|+.|+||..++...      +..++-|.+.|.+++|+
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p------LAVLkyHsagvn~vAfs  302 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP------LAVLKYHSAGVNAVAFS  302 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc------hhhhhhhhcceeEEEeC
Confidence            88888764421  11 11222234578899999999999999999999999999887      78888999999999999


Q ss_pred             CCCCcEEEEeCCCCCCeEEEEEC
Q 012679          325 PFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       325 p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      |+ ..++|+++  .|+.|.+|++
T Consensus       303 pd-~~lmAaas--kD~rISLWkL  322 (323)
T KOG0322|consen  303 PD-CELMAAAS--KDARISLWKL  322 (323)
T ss_pred             CC-Cchhhhcc--CCceEEeeec
Confidence            95 67777776  9999999986

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.8e-11  Score=118.31  Aligned_cols=244  Identities=13%  Similarity=0.079  Sum_probs=151.8

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE---EEecCC--eEEEEeCCCceeeEEecCCCcccEEEEEe-
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA---IGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW-  234 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la---~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-  234 (458)
                      ..|++.|.+.+...++.   .....+.+-.|+|||+.++   +...+|  .|.+.++.+++..+...  ..+.....+| 
T Consensus       165 ~~l~~~d~dG~~~~~lt---~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wS  239 (428)
T PRK01029        165 GELWSVDYDGQNLRPLT---QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFS  239 (428)
T ss_pred             ceEEEEcCCCCCceEcc---cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEEC
Confidence            37888998877654333   3345667889999997532   444444  57777888776443322  3333445667 


Q ss_pred             -CCCeEEEEe-CCC----cEEEEEccCC--CeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEe--CCCCCCCC
Q 012679          235 -NNHILTTGG-MDG----LIINNDVRVR--DHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWD--RSMASSNS  303 (458)
Q Consensus       235 -~~~~l~sg~-~dg----~i~vwd~~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd--~~~~~~~~  303 (458)
                       +|+.|+..+ .+|    .+..|++..+  .........+.......+|+|||+.|+..+ .+|...||.  +...... 
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-  318 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-  318 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-
Confidence             576666544 233    3344676542  222223323333456789999999888766 466555554  4321110 


Q ss_pred             cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEec-CCC
Q 012679          304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG-FTQ  382 (458)
Q Consensus       304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g-~~d  382 (458)
                          ...+..+...+....|+|++..++++........|.+||+.+++..........+....|+|+|+.|+.+.. ...
T Consensus       319 ----~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~  394 (428)
T PRK01029        319 ----PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNE  394 (428)
T ss_pred             ----eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCC
Confidence                233444455677899999998888776422235799999999887654444456778999999998886532 234


Q ss_pred             CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679          383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       383 ~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      ..|.++++..++..... ...+.+...+|+|-.
T Consensus       395 ~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        395 SELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             ceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence            57888998876654333 344556677888753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.3e-11  Score=119.65  Aligned_cols=233  Identities=16%  Similarity=0.114  Sum_probs=149.9

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C--eEEEEeCCCceeeEEecCCCcccEEEEEe--CC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C--QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~  236 (458)
                      .|+++|.......   .+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.... .. ........+|  ++
T Consensus       199 ~l~i~d~dG~~~~---~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~-~~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNEQ---MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TS-FPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCce---EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cC-CCCCcCCeeECCCC
Confidence            6888887665542   233346678999999999999887543 2  588899988765332 21 2223345677  56


Q ss_pred             CeEE-EEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679          237 HILT-TGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       237 ~~l~-sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      +.|+ +.+.+|.  |+++|+.++.  ...+..+........|+|||+.|+..+. ++  .|+++|+.++..       ..
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------~~  344 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------SR  344 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EE
Confidence            6555 4566675  7777887654  3444455556678899999998877654 33  466667765543       22


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEE
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLT  386 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~  386 (458)
                      +..........+|+|++..++++..  .++  .|.++|+.+++... +..........|+|+++.++.+.. .++  .+.
T Consensus       345 Lt~~g~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~-~~g~~~l~  420 (448)
T PRK04792        345 LTFEGEQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTT-YQGKQVLA  420 (448)
T ss_pred             EecCCCCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEe-cCCceEEE
Confidence            2212222345789999988887764  333  56678888876533 222222334579999999887653 333  477


Q ss_pred             EEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          387 LWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       387 iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      +++. ++.....+..+.+.+...+|+|
T Consensus       421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        421 AVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEC-CCCceEECcCCCCCcCCCccCC
Confidence            7776 4555566666666777888887

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.48  E-value=7.5e-12  Score=109.71  Aligned_cols=269  Identities=21%  Similarity=0.243  Sum_probs=186.1

Q ss_pred             CCEEEEEECCCCCeeeEEEec-CCCCCEEEEEEcC---CCC-EEEEEecCCeEEEEeCCCceeeEEecCCCc-----ccE
Q 012679          160 GSTVYLWDASDGTTSELVTVD-DENGPVTSVNWAP---DGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHR-----SRV  229 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~---~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~-----~~v  229 (458)
                      -|.+++|++.+-+..++.++. .....+..+.|..   +|. .++.+..+|.|.++..........+.+-..     ...
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            478899998876654433322 1245678888874   555 567778899999998765554444443111     123


Q ss_pred             EEEEe--CCCeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          230 GSLAW--NNHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      .++.|  .+..++++..+|.+.+-+..... ..++..+.|.-++..++|+. +.+++.+||.|+.+..||++.+..   .
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---~  201 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---F  201 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---e
Confidence            45566  36789999999998854443222 22447889999999999986 456889999999999999995432   1


Q ss_pred             eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                      . -+..+.|...|.+|.-+|..+..+++|+  .|-+|++||.+ -++++..-..++.|..+.++|.....+.+ ...-+-
T Consensus       202 i-~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-~CMh~G  277 (339)
T KOG0280|consen  202 I-WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-ACMHNG  277 (339)
T ss_pred             e-eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-HHHhcC
Confidence            1 2335678999999999998889999987  99999999999 47888888888999999999965522221 113445


Q ss_pred             EEEEeCCCc--e---eeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEE-EEecCCC
Q 012679          385 LTLWKYPSM--V---KMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLR-FWNVFGA  435 (458)
Q Consensus       385 i~iwd~~~~--~---~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~-iW~~~~~  435 (458)
                      .+|-+....  +   .....+.|.+-+..-.|......|+|++ .|..++ +|-.-++
T Consensus       278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            566665432  2   3344567777777777755556788876 477755 7855433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.48  E-value=6.9e-10  Score=104.51  Aligned_cols=267  Identities=13%  Similarity=0.051  Sum_probs=164.6

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----------CCeEEEEeCCCceeeEEecCCCccc--
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----------NCQVQLWDSTANRQLRTLRGGHRSR--  228 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----------dg~v~iwd~~~~~~~~~~~~~~~~~--  228 (458)
                      +.|++.|..+++.  +..+.....+ ..+ ++|||+.|+++..          +..|.+||..+.+.+..+..+...+  
T Consensus        27 ~~v~ViD~~~~~v--~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRV--LGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEE--EEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            8999999999887  4444432222 234 9999999888765          6799999999999999888532212  


Q ss_pred             ------EEEEEeCCCeEEEEe-C-CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          229 ------VGSLAWNNHILTTGG-M-DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       229 ------v~~l~~~~~~l~sg~-~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                            ...++-+|++|+... . +..|.+.|+.++.. +..+.- .+...-...+++..+  +-+.||......+....
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCC
Confidence                  455555788888765 3 68999999998764 333322 111111112212111  22334444433332221


Q ss_pred             CCCcceeeeeecccccce-eEEEecC-CCCcEEEEeCCCCCCeEEEEECCCC-----CeeEEEeC--------CCCeEEE
Q 012679          301 SNSVTQWLHRLEEHTSAV-KAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTG-----ACLNSVDT--------GSQVCAL  365 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v-~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~-----~~~~~~~~--------~~~v~~~  365 (458)
                      ... ......+.....++ ..-.+.+ ++..++++    ..|.|.+.|+...     +....+..        ...+.-+
T Consensus       179 ~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i  253 (352)
T TIGR02658       179 NPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV  253 (352)
T ss_pred             ceE-EeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence            100 00011111100000 0003455 66666665    4599999996443     33333221        1223449


Q ss_pred             EEcCCCCeEEE-Eec-------CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 012679          366 LWNKNERELLS-SHG-------FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGA  435 (458)
Q Consensus       366 ~~s~~~~~l~~-~~g-------~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~  435 (458)
                      +++++++.+++ .++       ...+.|.++|..+++.+..+.. ...+..++++|||+ +|++.. .++.|.+.|+.+.
T Consensus       254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            99999999998 332       1236899999999999998863 35789999999999 777666 5788999999988


Q ss_pred             Cccccc
Q 012679          436 PQVISK  441 (458)
Q Consensus       436 ~~~~~~  441 (458)
                      +.+.+.
T Consensus       333 k~i~~i  338 (352)
T TIGR02658       333 KELSSV  338 (352)
T ss_pred             eEEeee
Confidence            877664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.48  E-value=4.2e-12  Score=113.54  Aligned_cols=270  Identities=19%  Similarity=0.335  Sum_probs=179.2

Q ss_pred             CCCeEEEEcCCEEEEEEC-CCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC----CceeeEEecCCC
Q 012679          151 SSNVLAIALGSTVYLWDA-SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST----ANRQLRTLRGGH  225 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~-~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~----~~~~~~~~~~~~  225 (458)
                      ...+++++.|.+++||-- +.++.-+-... .-..+++++.+.++...|++|-.+|++.-+.+.    ....++.... |
T Consensus        36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~-h  113 (404)
T KOG1409|consen   36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLA-H  113 (404)
T ss_pred             CCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhh-h
Confidence            377999999999999953 34443111111 125679999999999999999999999888653    3344455554 7


Q ss_pred             cccEEEEEeC--CCeEEEEeCCCcEEEEEccC----------------------------------------CCeeEEEE
Q 012679          226 RSRVGSLAWN--NHILTTGGMDGLIINNDVRV----------------------------------------RDHIVETY  263 (458)
Q Consensus       226 ~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~----------------------------------------~~~~~~~~  263 (458)
                      ..+|..+-|+  ...+++.+.|..+.-.-.+.                                        .-.++.++
T Consensus       114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~  193 (404)
T KOG1409|consen  114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF  193 (404)
T ss_pred             hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence            7777777774  45555555554432211110                                        11235677


Q ss_pred             cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679          264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK  343 (458)
Q Consensus       264 ~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~  343 (458)
                      .+|.+.+.+++|.+....|.+|..|..+.+||+-.....     ...+.+|...|..+...+.-..+++ ++  .||.|.
T Consensus       194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-----~~el~gh~~kV~~l~~~~~t~~l~S-~~--edg~i~  265 (404)
T KOG1409|consen  194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-----AYELQGHNDKVQALSYAQHTRQLIS-CG--EDGGIV  265 (404)
T ss_pred             cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-----eeeeccchhhhhhhhhhhhheeeee-cc--CCCeEE
Confidence            899999999999999999999999999999999776552     5667789999999988775555555 44  899999


Q ss_pred             EEECCCCCeeEE----------E-------------------------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679          344 FWNTHTGACLNS----------V-------------------------DTGSQVCALLWNKNERELLSSHGFTQNQLTLW  388 (458)
Q Consensus       344 lwd~~~~~~~~~----------~-------------------------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw  388 (458)
                      +||++.......          .                         ..+..++..+-+....+...  |+ .-.+++-
T Consensus       266 ~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~m--g~-e~~vR~~  342 (404)
T KOG1409|consen  266 VWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTM--GF-EFSVRVC  342 (404)
T ss_pred             EEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccc--cc-eeEEEEe
Confidence            999875432100          0                         01222333333333333332  21 2234444


Q ss_pred             eC--------CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          389 KY--------PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       389 d~--------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      |-        +. .+++.+..-...|+.+.+..+-..|+|+|.|..|+|||+..
T Consensus       343 ~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  343 DSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             cccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            42        21 23444332235688999988888999999999999999864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=4e-12  Score=120.66  Aligned_cols=199  Identities=20%  Similarity=0.348  Sum_probs=154.2

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      ..++.++.+..||-+|++.|..  +..+....+.+++|..++...+|++|+.+|.|..||......+..+....  .|.+
T Consensus       146 cDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~--~v~s  221 (703)
T KOG2321|consen  146 CDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS--SVNS  221 (703)
T ss_pred             ccEEEeecCcceEEEEcccccc--ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc--ccCC
Confidence            4688899999999999999998  66666667889999999999999999999999999988777666655300  0100


Q ss_pred             EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679          232 LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       232 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                                                   .........|+++.|+.+|-.+++|+.+|.|.|||++...+.     +..-
T Consensus       222 -----------------------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~~kd  267 (703)
T KOG2321|consen  222 -----------------------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----LVKD  267 (703)
T ss_pred             -----------------------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----eecc
Confidence                                         001112345999999999999999999999999999998762     2222


Q ss_pred             cccccceeEEEecCC-CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          312 EEHTSAVKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       312 ~~h~~~v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      ....-+|..+.|.+. +...+++.   ....++|||-.+|+....+.....+..+|+-|++..++++  ..+..+..|=+
T Consensus       268 h~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A--ne~~~m~~yyi  342 (703)
T KOG2321|consen  268 HGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA--NESSKMHTYYI  342 (703)
T ss_pred             cCCccceeeecccccCCCceEEec---chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe--cCCCcceeEEc
Confidence            233457889999764 34455554   5678999999999999999998899999999999999984  46666766666


Q ss_pred             CCc
Q 012679          391 PSM  393 (458)
Q Consensus       391 ~~~  393 (458)
                      +..
T Consensus       343 P~L  345 (703)
T KOG2321|consen  343 PSL  345 (703)
T ss_pred             ccc
Confidence            554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.44  E-value=1.2e-10  Score=115.37  Aligned_cols=215  Identities=16%  Similarity=0.156  Sum_probs=143.3

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.++|..... .+.+.. +...+...+|  +++.|+.+..+   ..|++||+.++..  ..+..+...+.++.|+|||+
T Consensus       171 ~l~~~d~~g~~-~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       171 ELQVADYDGAN-PQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             eEEEEcCCCCC-CEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            68888875443 344444 6667888888  57778776643   4799999987653  23334556677799999999


Q ss_pred             EEEEE-ECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          281 QLASG-GNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       281 ~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      .|+.. +.++  .|++||+.++..       ..+..+........|+|++..++++........|.++|+.+++......
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~  319 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF  319 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            87644 4444  588889876542       3344454555678999998888776541223468889988877554444


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEecC
Q 012679          358 TGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE---TLRFWNVF  433 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iW~~~  433 (458)
                      ....+....|+|+++.++.+.... ...|.+||+.++... .+... .......|+|||+.|+.++.++   .+.+.+..
T Consensus       320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            455677889999999998865321 127888998875432 23222 2345568999999998887764   34555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3e-10  Score=112.97  Aligned_cols=218  Identities=17%  Similarity=0.150  Sum_probs=143.3

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC---CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD---GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.++|...+.. +.+.. +...+....|  +++.|+..+.+   ..|.+||+.++..  ..+....+.+....|+|||+
T Consensus       180 ~l~~~d~~g~~~-~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCc-eEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCC
Confidence            477888775543 44443 6678888899  46777665533   3689999987653  23333344556789999999


Q ss_pred             EEEE-EECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          281 QLAS-GGNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       281 ~l~s-g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      .|+. ...+|  .|++||+.++..       ..+..+........|+|++..++++........|+++|+.+++......
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~  328 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF  328 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            8874 44444  588889887643       3444555566778999999888877642223468888988887544332


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEecC
Q 012679          358 TGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---ETLRFWNVF  433 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iW~~~  433 (458)
                      .........|+|+++.++.+.... ...|.++|+.+++.. .+. +........|+|||+.|+..+.+   ..|.++++.
T Consensus       329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            333445678999999998865321 225888998877543 232 22222356899999999877654   346677775


Q ss_pred             CCC
Q 012679          434 GAP  436 (458)
Q Consensus       434 ~~~  436 (458)
                      +..
T Consensus       407 g~~  409 (430)
T PRK00178        407 GRV  409 (430)
T ss_pred             CCc
Confidence            443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=2.5e-10  Score=112.57  Aligned_cols=215  Identities=11%  Similarity=0.137  Sum_probs=138.1

Q ss_pred             eeccCC--C--eEEEEcC---CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CC----eEEEEeCCC
Q 012679          147 LDWGSS--N--VLAIALG---STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NC----QVQLWDSTA  214 (458)
Q Consensus       147 ~~~~~~--~--~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg----~v~iwd~~~  214 (458)
                      -.|+++  .  ++.++..   ..|++.++.+++...+..+.+   .....+|+|||+.||..+. +|    .+.+|++..
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~  266 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET  266 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence            467774  3  3334432   479999999998766665544   3456899999999887653 23    344577765


Q ss_pred             c--eeeEEecCCCcccEEEEEe--CCCeEEEEe-CCCcEEEE--EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC
Q 012679          215 N--RQLRTLRGGHRSRVGSLAW--NNHILTTGG-MDGLIINN--DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN  287 (458)
Q Consensus       215 ~--~~~~~~~~~~~~~v~~l~~--~~~~l~sg~-~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~  287 (458)
                      +  .....+...+.......+|  +|..|+..+ .+|...+|  ++.........+..+...+....|+|||+.|+..+.
T Consensus       267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~  346 (428)
T PRK01029        267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV  346 (428)
T ss_pred             CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence            3  2223333212233455677  567666554 56755555  443222223444445566778999999999987765


Q ss_pred             C---CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEE
Q 012679          288 D---NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA  364 (458)
Q Consensus       288 d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~  364 (458)
                      +   ..|.+||+.++..       ..+......+....|+|++..++++........|.++|+.+++........+.+..
T Consensus       347 ~~g~~~I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~  419 (428)
T PRK01029        347 IKGVRQICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRF  419 (428)
T ss_pred             CCCCcEEEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccC
Confidence            3   4699999987754       23333334567899999998888776533456799999998877665555566777


Q ss_pred             EEEcCCC
Q 012679          365 LLWNKNE  371 (458)
Q Consensus       365 ~~~s~~~  371 (458)
                      .+|+|-.
T Consensus       420 p~Ws~~~  426 (428)
T PRK01029        420 PSWGAFP  426 (428)
T ss_pred             ceecCCC
Confidence            7887753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=6.4e-11  Score=115.22  Aligned_cols=288  Identities=17%  Similarity=0.235  Sum_probs=198.3

Q ss_pred             CCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCe-------------eeEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 012679          138 LVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTT-------------SELVTVDDENGPVTSVNWAPDGRHIAIGL  202 (458)
Q Consensus       138 ~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~-------------~~~~~~~~h~~~V~~v~~s~~g~~la~g~  202 (458)
                      +.+...++++.|+.  +.++++|.||.+++..+.+...             ..-.++++|.+.|.-+.|+.+.+.|-+..
T Consensus        11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            45667899999987  5688888899999998765321             11245789999999999999999999999


Q ss_pred             cCCeEEEEeCCCceeeEEecC-CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679          203 NNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                      .+|.|.||-+-.+.-...+.. ...+.|.+++|  +|..++....||.|.+=.+....---+.+++  .....+.|++|.
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL  168 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence            999999999888775554432 25677899999  4899999999999988777644321222322  234578899999


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCc-ceeee----eecccccceeEEEec--------CCCCcEEEEeCCCCCCeEEEEE
Q 012679          280 QQLASGGNDNLLHIWDRSMASSNSV-TQWLH----RLEEHTSAVKAIAWC--------PFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~----~~~~h~~~v~~l~~~--------p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      +.++.+-..|.+.+||....-.... ..+..    .+......|..+.|.        |+.+ .++.+-  ..|.+.+-.
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy--~nGr~QiMR  245 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCY--ANGRMQIMR  245 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEE--cCceehhhh
Confidence            9999888999999999654321100 00101    111122235566664        3434 444443  678887776


Q ss_pred             CCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC-------CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679          347 THTGACLNSVDTGSQVCALLWNKNERELLSSHGFT-------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA  419 (458)
Q Consensus       347 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-------d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~  419 (458)
                      -.+...-..++++-.+....|+++|..|++++...       .+.|.+|. +-|+.+.+++.....|++++|-..|-.++
T Consensus       246 ~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  246 SENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             hcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE
Confidence            66555555667778899999999999999873221       13455554 56777888887788899999876665554


Q ss_pred             EEeCCCcEEEEec
Q 012679          420 SAAADETLRFWNV  432 (458)
Q Consensus       420 s~s~Dg~i~iW~~  432 (458)
                      .+ .|+.|.+=++
T Consensus       325 ~A-vdsfiyfanI  336 (1189)
T KOG2041|consen  325 IA-VDSFIYFANI  336 (1189)
T ss_pred             EE-ecceEEEEee
Confidence            33 4455444333

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.39  E-value=9.1e-11  Score=112.25  Aligned_cols=187  Identities=15%  Similarity=0.263  Sum_probs=150.1

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCC-CCCEEEEEEc------C--------------CCCEEEEEecCCeEEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDE-NGPVTSVNWA------P--------------DGRHIAIGLNNCQVQLW  210 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s------~--------------~g~~la~g~~dg~v~iw  210 (458)
                      ..++....||.+++|+...++..+-+.-..| .+..++..|.      |              |...++-|...|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            3466677899999999998876433321111 2344455552      2              33468889999999999


Q ss_pred             eCCCceeeEEec-CCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC
Q 012679          211 DSTANRQLRTLR-GGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN  287 (458)
Q Consensus       211 d~~~~~~~~~~~-~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~  287 (458)
                      ++..++....+. +.|.+.|.++.|+.  ..|.+++.|+.+..|+...... +.........+.+++.+||++.|++|+ 
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-eeeeccCCCccceEEEcCCCCEEEecc-
Confidence            999999988887 67999999999953  7899999999999999987654 677888888899999999999999987 


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC-----CCcEEEEeCCCCCCeEEEEECCC
Q 012679          288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-----QSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                       +.|++||+++.+.      +..|.+|.++|.+++|--.     |.++|.+..  .+..|.+|-+..
T Consensus       164 -~~ik~~~~~~kev------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 -RQIKVLDIETKEV------VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK  221 (541)
T ss_pred             -ceEEEEEccCceE------EEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence             5899999999887      8999999999999999876     677887766  666777886654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.39  E-value=3.4e-10  Score=106.47  Aligned_cols=284  Identities=12%  Similarity=0.155  Sum_probs=193.2

Q ss_pred             CccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-------------
Q 012679          140 DDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-------------  205 (458)
Q Consensus       140 ~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-------------  205 (458)
                      .++.++...|++ +..++...-..|.+|.......  +..+. | ..|..+.|+|.++||.+-...+             
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~--l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK--LVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhh--eeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            355677788988 5677777778899999877663  55554 2 4599999999999999865433             


Q ss_pred             --eEEEEeCCCceeeEEecCCCccc--EE-EEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-cccceEeEEEcC
Q 012679          206 --QVQLWDSTANRQLRTLRGGHRSR--VG-SLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSA  277 (458)
Q Consensus       206 --~v~iwd~~~~~~~~~~~~~~~~~--v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~sp  277 (458)
                        .+.+||+.++..+..+.. ...+  .. -+.|  +..+++-. ....++|+++ +.......+.. ....|....|+|
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             cCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence              499999999999998886 4433  22 3444  45554433 3456889997 33311111111 135688888999


Q ss_pred             CC--CEEEE-----EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC--------CCCCeE
Q 012679          278 SG--QQLAS-----GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG--------GGDRCI  342 (458)
Q Consensus       278 d~--~~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g--------~~d~~i  342 (458)
                      .+  ..||.     .+.++.++||.+.....      +.+..-....=..+.|.+.+..+++-.-.        -....+
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~------l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL  257 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSV------LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL  257 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCe------eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence            53  34443     45678899999875443      22211122233468899888877654310        023568


Q ss_pred             EEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          343 KFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       343 ~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      +++++....+-......++|..++|.|.++.+++++|+.+-.+.++|++.. ..  +......=..+.|+|.+++++.++
T Consensus       258 yl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         258 YLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             EEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEec
Confidence            888888555544446688999999999999999999999999999999876 22  223344445678999999999888


Q ss_pred             CC---CcEEEEecCCCCccc
Q 012679          423 AD---ETLRFWNVFGAPQVI  439 (458)
Q Consensus       423 ~D---g~i~iW~~~~~~~~~  439 (458)
                      -|   |.+-+|+..+.-...
T Consensus       335 F~nl~gni~i~~~~~rf~~~  354 (561)
T COG5354         335 FDNLQGNIEIFDPAGRFKVA  354 (561)
T ss_pred             CCccccceEEeccCCceEEE
Confidence            76   678888876654443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=2.4e-09  Score=100.86  Aligned_cols=237  Identities=10%  Similarity=0.094  Sum_probs=154.7

Q ss_pred             cCCEEEEEECCCCCeeeEEEecCC-----CCCEEEEEEcCCCCEEEEEe-c-CCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          159 LGSTVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGL-N-NCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       159 ~d~~v~iwd~~~~~~~~~~~~~~h-----~~~V~~v~~s~~g~~la~g~-~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      .+..|.+||..+.+...-..+...     ......++++|||++|++.. . +..|.+.|+.+++.+.++..  .....-
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~v  152 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHI  152 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEE
Confidence            368999999999987433333211     22344789999999999876 3 68999999999999998885  222222


Q ss_pred             EEeCCCeEEEEeCCCcEEEEEccCCCeeE-EE---Ecccccce-EeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          232 LAWNNHILTTGGMDGLIINNDVRVRDHIV-ET---YRGHNQEV-CGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       232 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~---~~~h~~~v-~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      +........+-+.||......+....... ..   +......+ ..-.|.+ +|+++..... |.|.+.|+........ 
T Consensus       153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-  230 (352)
T TIGR02658       153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-  230 (352)
T ss_pred             EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-
Confidence            33333333344455555554443332211 11   11100000 0003455 8887777666 9999999765443211 


Q ss_pred             eeeeeec-------ccccceeEEEecCCCCcEEEEeCCC-------CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679          306 QWLHRLE-------EHTSAVKAIAWCPFQSNLLATGGGG-------GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE  371 (458)
Q Consensus       306 ~~~~~~~-------~h~~~v~~l~~~p~~~~ll~s~~g~-------~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~  371 (458)
                      .....+.       -..+.+.-++++|+++.+++...+.       ..+.|.++|..+++.+..+..+..+..++++|++
T Consensus       231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg  310 (352)
T TIGR02658       231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA  310 (352)
T ss_pred             ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC
Confidence            1111111       1233444599999999888853211       2258999999999999999999999999999999


Q ss_pred             C-eEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679          372 R-ELLSSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       372 ~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      + .++++.+ .++.|.++|..+++.+.++.
T Consensus       311 kp~lyvtn~-~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       311 KPLLYALST-GDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             CeEEEEeCC-CCCcEEEEECcCCeEEeeec
Confidence            9 7776644 57889999999999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=3.5e-11  Score=115.06  Aligned_cols=216  Identities=15%  Similarity=0.153  Sum_probs=157.2

Q ss_pred             CCCCEEEEEecCCeEEEEeCCCceeeEEecCC--CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce
Q 012679          193 PDGRHIAIGLNNCQVQLWDSTANRQLRTLRGG--HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV  270 (458)
Q Consensus       193 ~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v  270 (458)
                      |.+.|+|....||.+++||...++....+...  -.+...+..|                 .+.....+.+....  ..+
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w-----------------~L~~~~s~~k~~~~--~~~   63 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW-----------------GLSADYSPMKWLSL--EKA   63 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE-----------------EEEeccchHHHHhH--HHH
Confidence            45679999999999999999999887777631  1223333333                 32222211111100  001


Q ss_pred             EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      .  .-+-|...++-|...|.|.+|+...++.    .....-..|.+.|.++.|+.+ -..+.+++  .|..+..|+...+
T Consensus        64 ~--~~s~~t~~lvlgt~~g~v~~ys~~~g~i----t~~~st~~h~~~v~~~~~~~~-~~ciyS~~--ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   64 K--KASLDTSMLVLGTPQGSVLLYSVAGGEI----TAKLSTDKHYGNVNEILDAQR-LGCIYSVG--ADLKVVYILEKEK  134 (541)
T ss_pred             h--hccCCceEEEeecCCccEEEEEecCCeE----EEEEecCCCCCcceeeecccc-cCceEecC--CceeEEEEecccc
Confidence            1  1123556788899999999999988775    112333579999999999874 56666666  8999999999999


Q ss_pred             CeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC-----CCEEEEE-eC
Q 012679          351 ACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD-----GCTVASA-AA  423 (458)
Q Consensus       351 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd-----g~~l~s~-s~  423 (458)
                      ..+...... ..+.+++.+||++.++++    .++|.+||+.+.+.+..|.||.++|.+++|..+     |.+++++ ..
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA  210 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence            988888764 558899999999999984    478999999999999999999999999999876     6666554 45


Q ss_pred             CCcEEEEecCCCCcccc
Q 012679          424 DETLRFWNVFGAPQVIS  440 (458)
Q Consensus       424 Dg~i~iW~~~~~~~~~~  440 (458)
                      +.-+.+|-+........
T Consensus       211 ~r~i~~w~v~~~~kkks  227 (541)
T KOG4547|consen  211 ERGITVWVVEKEDKKKS  227 (541)
T ss_pred             ccceeEEEEEcccccch
Confidence            67789998876544433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.2e-10  Score=114.38  Aligned_cols=285  Identities=16%  Similarity=0.178  Sum_probs=197.4

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC------------CCEEEEEecCCeEEEE
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD------------GRHIAIGLNNCQVQLW  210 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~------------g~~la~g~~dg~v~iw  210 (458)
                      ..+.+||++..++|.|..+.|.+-|..+-+.  +..++.|...|+.|.|.|.            .-.||++...|.|.+|
T Consensus        17 N~~A~Dw~~~GLiAygshslV~VVDs~s~q~--iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSGLIAYGSHSLVSVVDSRSLQL--IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccceEEEecCceEEEEehhhhhh--hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            3778999999999999999999999887776  7778889999999999873            1267888889999999


Q ss_pred             eCCCceeeEEecCCCcccEEEEEe-----C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEE
Q 012679          211 DSTANRQLRTLRGGHRSRVGSLAW-----N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLA  283 (458)
Q Consensus       211 d~~~~~~~~~~~~~~~~~v~~l~~-----~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~  283 (458)
                      |...+..+..+.. |..++..++|     + .+.|++-.....|.+|+..+++...+.-.+ .....|+.+.| |.+.+.
T Consensus        95 d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~~  172 (1062)
T KOG1912|consen   95 DFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHFC  172 (1062)
T ss_pred             EehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceEE
Confidence            9999988888886 8899999999     2 367888888899999999988864433323 34566788888 677777


Q ss_pred             EEECCCcEEEEeCCCCCCCCc-ceeeeeeccccc-------------------------ceeEEEecCCCCcEEEEeCCC
Q 012679          284 SGGNDNLLHIWDRSMASSNSV-TQWLHRLEEHTS-------------------------AVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       284 sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~-------------------------~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      .-+..|.+.+-+.-....+.. .+..+.-..|..                         ....++|+|.-.+++...   
T Consensus       173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---  249 (1062)
T KOG1912|consen  173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---  249 (1062)
T ss_pred             EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---
Confidence            777778887776544333211 111111112221                         012467788666665554   


Q ss_pred             CCCeEEEEECCCCCeeEEEeCCC-CeEEEEEcCCC--CeEEEEecCCCCcEEEEeCCC----------------ceeeEE
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNE--RELLSSHGFTQNQLTLWKYPS----------------MVKMAE  398 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~-~v~~~~~s~~~--~~l~~~~g~~d~~i~iwd~~~----------------~~~~~~  398 (458)
                      ..+.+.++|++-..++..+.... .+.-+.|-|+.  ..|++.  ..+|.+.||--+.                ++++..
T Consensus       250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl--H~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~  327 (1062)
T KOG1912|consen  250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL--HSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV  327 (1062)
T ss_pred             eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE--ecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence            68899999999998888876543 34455565554  556664  4899999997544                222222


Q ss_pred             EeCC-CCcEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCC
Q 012679          399 LSGH-TSRVLFMAQSPD-GCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       399 ~~~h-~~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +..- +-++...+..|. ...++.--.+|.+.+|.+.++.
T Consensus       328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence            2111 122333344453 4445555568889999998654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1e-08  Score=93.29  Aligned_cols=272  Identities=12%  Similarity=0.131  Sum_probs=182.3

Q ss_pred             CCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEeCCC--ceee--EEecCCCcccEE
Q 012679          160 GSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---CQVQLWDSTA--NRQL--RTLRGGHRSRVG  230 (458)
Q Consensus       160 d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g~v~iwd~~~--~~~~--~~~~~~~~~~v~  230 (458)
                      +.-|++|++.+  |++..+.. -.+.+.++-++|+|++++|.++-.+   |.|..|.+..  |+..  ..... ...+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCe
Confidence            56899999873  44333332 3456778999999999999888654   6777777664  4432  22221 222225


Q ss_pred             EEEe--CCCeEEEEeC-CCcEEEEEccCCCeeEE--EEcccccc----------eEeEEEcCCCCEEEEEEC-CCcEEEE
Q 012679          231 SLAW--NNHILTTGGM-DGLIINNDVRVRDHIVE--TYRGHNQE----------VCGLKWSASGQQLASGGN-DNLLHIW  294 (458)
Q Consensus       231 ~l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~--~~~~h~~~----------v~~l~~spd~~~l~sg~~-dg~i~iw  294 (458)
                      .++.  ++.+++++.. .|.|.++-++....+..  ....|.+.          +....+.|++++|++..- --.|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            5666  5777777754 58899999876543221  22234444          788899999999988763 3479999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-C---eeEEEe-------CCCCeE
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-A---CLNSVD-------TGSQVC  363 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-~---~~~~~~-------~~~~v~  363 (458)
                      ++..+......  ...+ ...+.-+.|+|+|+++...+.+-  -+++|-+|..... .   .++.+.       ......
T Consensus       173 ~~~dg~L~~~~--~~~v-~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         173 DLDDGKLTPAD--PAEV-KPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             EcccCcccccc--cccc-CCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            99866553222  1122 34556789999999888877776  8999999998873 2   233322       234577


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeE---EEeCCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCcc
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMA---ELSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNVFGAPQV  438 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iW~~~~~~~~  438 (458)
                      .+..+++|++|.++.- ..+.|.+|.+... ..+.   ....+........|+|.|++|+.+..| .+|.+|.+....-.
T Consensus       248 aIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         248 AIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             EEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence            8999999999999743 4558888887543 2222   222233346889999999999988865 57999998765443


Q ss_pred             c
Q 012679          439 I  439 (458)
Q Consensus       439 ~  439 (458)
                      .
T Consensus       327 L  327 (346)
T COG2706         327 L  327 (346)
T ss_pred             E
Confidence            3

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.2e-09  Score=108.61  Aligned_cols=216  Identities=18%  Similarity=0.171  Sum_probs=137.3

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-CC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-DG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.++|...... +.+.. +...+.+..|  +++.|+..+. ++  .|++||+.++..  ..+....+......|+|||+
T Consensus       199 ~l~i~d~dG~~~-~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence            577778655443 34443 6677888888  4677766543 33  588999887653  22222233345789999999


Q ss_pred             EEEE-EECCCc--EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          281 QLAS-GGNDNL--LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       281 ~l~s-g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      .|+. .+.+|.  |+++|+.++.       ...+..+.......+|+|++..++++........|.++|+.+++......
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~  347 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF  347 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence            8875 455664  7777877654       33444555566788999999988887642233467788888887544322


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-Cc--EEEEec
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-ET--LRFWNV  432 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~--i~iW~~  432 (458)
                      .........|+|+|+.++.+.. .++  .|.++|+.+++.. .+... .......|+|||+.|+..+.+ |.  |.+++.
T Consensus       348 ~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        348 EGEQNLGGSITPDGRSMIMVNR-TNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             CCCCCcCeeECCCCCEEEEEEe-cCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            3333456789999999988643 344  4566787776543 23222 122245899999988776653 33  667776


Q ss_pred             CCC
Q 012679          433 FGA  435 (458)
Q Consensus       433 ~~~  435 (458)
                      .+.
T Consensus       425 ~G~  427 (448)
T PRK04792        425 DGR  427 (448)
T ss_pred             CCC
Confidence            433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=6.3e-11  Score=120.02  Aligned_cols=260  Identities=15%  Similarity=0.196  Sum_probs=177.4

Q ss_pred             CeEEEEcCCEEEEEECCCCCeee----EEEecCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc
Q 012679          153 NVLAIALGSTVYLWDASDGTTSE----LVTVDDEN--GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR  226 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~----~~~~~~h~--~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~  226 (458)
                      ..+.++.+-.|.+||+..+....    ..-+..|.  +.+.     -.+.+++.+..-+.+..-+.... ....+.. +.
T Consensus        18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~~~-~~~~~s~-wi   90 (967)
T KOG0974|consen   18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEASNQ-IIERFSD-WI   90 (967)
T ss_pred             ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchhhh-hhhhccc-cc
Confidence            44666778899999999876521    11122330  0010     12335555555444444332221 1112221 21


Q ss_pred             ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc----cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679          227 SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN----QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN  302 (458)
Q Consensus       227 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~  302 (458)
                      .. ..+.|....++.++.+..+.+||...... ........    ....-+-++++.-++++|+.-+.|.+|+...... 
T Consensus        91 ~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~-~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-  167 (967)
T KOG0974|consen   91 FG-AKLFEENKKIALVTSRNSLLIRDSKNSSV-LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-  167 (967)
T ss_pred             cc-cchhhhcceEEEEEcCceEEEEecccCce-ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence            11 45556788899999999999999876543 22222111    1223344567788999999999999999883333 


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SVDTGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                           -..+.+|.+.|.++.|+-++.++ ++.+  .|+++++|++.+.+...  .+.+...+..+++.|+  ++++  +.
T Consensus       168 -----p~~l~GHeG~iF~i~~s~dg~~i-~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t--~g  235 (967)
T KOG0974|consen  168 -----PIRLKGHEGSIFSIVTSLDGRYI-ASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT--VG  235 (967)
T ss_pred             -----cceecccCCceEEEEEccCCcEE-EEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEE--ec
Confidence                 22678999999999999976554 5555  99999999999988665  4567788999999999  6666  44


Q ss_pred             CCCcEEEEeCCCceeeEEEeCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          381 TQNQLTLWKYPSMVKMAELSGHTS-RVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .|-+.++|+... +.+..+.+|.. .|..++..++...++|++.|+.+++|++...
T Consensus       236 edctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  236 EDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            899999996644 44447888874 5999999999999999999999999998654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=1.4e-08  Score=97.64  Aligned_cols=255  Identities=13%  Similarity=0.146  Sum_probs=164.4

Q ss_pred             CCeEEEEc----CCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-ceeeEE---
Q 012679          152 SNVLAIAL----GSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA-NRQLRT---  220 (458)
Q Consensus       152 ~~~la~~~----d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~-~~~~~~---  220 (458)
                      +.++++..    ++.|..|.+..  +++..+.+..........++++|++++|+++. .+|.|.++++.. +.....   
T Consensus        49 ~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~  128 (345)
T PF10282_consen   49 RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT  128 (345)
T ss_dssp             SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE
T ss_pred             CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee
Confidence            45666655    46888888765  66666666654456778999999999999987 488999999977 333222   


Q ss_pred             ec---------CCCcccEEEEEeC--CCeEEEEe-CCCcEEEEEccCCCe-eE--EEE-cccccceEeEEEcCCCCEEEE
Q 012679          221 LR---------GGHRSRVGSLAWN--NHILTTGG-MDGLIINNDVRVRDH-IV--ETY-RGHNQEVCGLKWSASGQQLAS  284 (458)
Q Consensus       221 ~~---------~~~~~~v~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~~-~~--~~~-~~h~~~v~~l~~spd~~~l~s  284 (458)
                      +.         ........++.++  ++++++.. ....|.+|++..... +.  ..+ ......-..+.|+|+++++.+
T Consensus       129 ~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv  208 (345)
T PF10282_consen  129 VRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV  208 (345)
T ss_dssp             EESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred             cccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence            21         0123456778884  56666654 345799999976552 21  112 233455788999999998866


Q ss_pred             EE-CCCcEEEEeCCCCCCCCcceeeeeecc------cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCC--ee
Q 012679          285 GG-NDNLLHIWDRSMASSNSVTQWLHRLEE------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGA--CL  353 (458)
Q Consensus       285 g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~--~~  353 (458)
                      .. .++.|.++++......  ...+..+..      .......|+++|+++.++++..  ....|.+|++.  ++.  .+
T Consensus       209 ~~e~s~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~  284 (345)
T PF10282_consen  209 VNELSNTVSVFDYDPSDGS--LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLV  284 (345)
T ss_dssp             EETTTTEEEEEEEETTTTE--EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEE
T ss_pred             ecCCCCcEEEEeecccCCc--eeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEE
Confidence            65 4788999998832221  111222211      1125678999999999999876  67899999983  343  33


Q ss_pred             EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC--CCceeeEEEe-CCCCcEEEEEE
Q 012679          354 NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY--PSMVKMAELS-GHTSRVLFMAQ  411 (458)
Q Consensus       354 ~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~--~~~~~~~~~~-~h~~~V~~l~~  411 (458)
                      ..+.. +.....+.++|++++|+++. ..++.|.+|++  .++.....-. ..-....||.|
T Consensus       285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  285 QTVPTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            44454 45589999999999999974 46778999876  4555443322 12344556665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.3e-09  Score=103.50  Aligned_cols=281  Identities=16%  Similarity=0.272  Sum_probs=181.1

Q ss_pred             ccceeeccCC--CeEEEEc-----------CCEEEEEECCCCCeeeEEEecCCCCCE-EEEEEcCCCCEEEEEecCCeEE
Q 012679          143 YLNLLDWGSS--NVLAIAL-----------GSTVYLWDASDGTTSELVTVDDENGPV-TSVNWAPDGRHIAIGLNNCQVQ  208 (458)
Q Consensus       143 ~~~~~~~~~~--~~la~~~-----------d~~v~iwd~~~~~~~~~~~~~~h~~~V-~~v~~s~~g~~la~g~~dg~v~  208 (458)
                      ++..++++|+  .|++-+.           +..+.|||+.+|.....+........+ .-..||.|++|+|.-..+ .|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence            3556777773  4555442           268999999999875444432122222 346899999999988776 799


Q ss_pred             EEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeC-----CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679          209 LWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGM-----DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       209 iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~  281 (458)
                      ||+..+..++..-.. ....|..++|.+  ++||--..     -..+.+-.+.+++. +++..-|.-.=+.+.|-.+|.+
T Consensus       330 IyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcE
Confidence            999877554433222 456788888865  34443221     12344445544443 3333444445567888889999


Q ss_pred             EEEEE----------CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-C
Q 012679          282 LASGG----------NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-G  350 (458)
Q Consensus       282 l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~  350 (458)
                      |+.--          .=-.+.|+.++....+     +..+ .-...|...+|-|.|..+.+..+.+...++.+|.+.+ .
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIp-----ve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~  481 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIP-----VEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI  481 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCC-----ceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence            87532          1123556666655442     2222 3456789999999988877766655667899998873 2


Q ss_pred             ---CeeEEEeCCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEEeCCC--ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-
Q 012679          351 ---ACLNSVDTGSQVCALLWNKNERELLSSH-GFTQNQLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAA-  423 (458)
Q Consensus       351 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iwd~~~--~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-  423 (458)
                         +.+..++. ...+.+.|+|.|++++++. ++..|.+.++|...  .+.+... .| ...+.+.|.|.|+|++|++. 
T Consensus       482 ~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  482 KKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             Cchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEeeeh
Confidence               23334433 5578899999999998754 33578999999874  3332222 23 34578899999999999975 


Q ss_pred             -----CCcEEEEecCCC
Q 012679          424 -----DETLRFWNVFGA  435 (458)
Q Consensus       424 -----Dg~i~iW~~~~~  435 (458)
                           |.--+||++.+.
T Consensus       559 wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  559 WRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             hhhccccceEEEEeecH
Confidence                 556788888653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=6.4e-11  Score=120.00  Aligned_cols=188  Identities=17%  Similarity=0.259  Sum_probs=147.4

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG----PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~----~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +.|...+++.+..++.+.+||...+..  +..+.....    ...-+.++++.-++++|+.-+.|.+|+....+.-..+.
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            455667899999999999999887665  333322111    12223456677799999999999999987433333455


Q ss_pred             CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          223 GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       223 ~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      + |.+.|.++.|  ++.++++.+.|..+++|++.+.+......-+|+..|..+.|.|+  .+++++.|.++++|+.+...
T Consensus       173 G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  173 G-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             c-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce
Confidence            5 9999999999  79999999999999999999888765567799999999999988  99999999999999766544


Q ss_pred             CCCcceeeeeeccccc-ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          301 SNSVTQWLHRLEEHTS-AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                             +..+.+|.. .+..++..+ +..++++++  .|+.+++||+..
T Consensus       250 -------l~~y~~h~g~~iw~~~~~~-~~~~~vT~g--~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  250 -------LEVYDEHSGKGIWKIAVPI-GVIIKVTGG--NDSTLKLWDLNG  289 (967)
T ss_pred             -------ehhhhhhhhcceeEEEEcC-CceEEEeec--cCcchhhhhhhc
Confidence                   346667754 588888888 466777776  999999999764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=4.9e-11  Score=108.34  Aligned_cols=171  Identities=12%  Similarity=0.147  Sum_probs=135.2

Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      +-+.+|.+.|.++.|+.++++|++|+.|..+++|.+...-.....+++.... .|...|.|++|.. +...+.+|+  .+
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~--~~  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGE--RW  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCC--Cc
Confidence            4566899999999999999999999999999999987543333334444443 3558999999998 567777776  99


Q ss_pred             CeEEEEECCCCCeeEEEeCCC---CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-ee--EEEeCCCCcEEEEEEcC
Q 012679          340 RCIKFWNTHTGACLNSVDTGS---QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KM--AELSGHTSRVLFMAQSP  413 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~--~~~~~h~~~V~~l~~sp  413 (458)
                      ++|.+.|+.+.+.+..+.+..   .|..+..+|..+.+++++  .++.|.+||.+... .+  ..+.........+.|+|
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t--~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT--RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe--cCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            999999999999988887654   799999999999888865  89999999997654 21  12233445677889999


Q ss_pred             C-CCEEEEEeCCCcEEEEecCCCC
Q 012679          414 D-GCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       414 d-g~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      . ..+|++++.-|-+-+||.....
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             CCceeEEeccccCCCCceeecccc
Confidence            4 5677888889999999997654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=4.9e-09  Score=97.91  Aligned_cols=211  Identities=14%  Similarity=0.138  Sum_probs=142.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEE-ecCC-----CCCEE---EEE-EcC-CCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVT-VDDE-----NGPVT---SVN-WAP-DGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~-~~~h-----~~~V~---~v~-~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +.-+.-...|.|++||.++..++.+-- ++-.     ...+.   -+. |++ +|.+++..+. |...|.+...+-.++ 
T Consensus       278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-  355 (668)
T COG4946         278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-  355 (668)
T ss_pred             CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE-
Confidence            345666778999999998877544321 0100     01111   111 444 6888887764 567777655444332 


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCC-cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDG-LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                        .+|...|.-..+  ++.-++.|..|| .+-++|.+++.  ++.+...-+.|.++..+++|++++.+.....|.+.|+.
T Consensus       356 --v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         356 --VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             --cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence              236677776666  577899999999 89999998765  46667778899999999999999999999999999999


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe-CCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~-~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  374 (458)
                      ++..      ...-+...+-|+.++|+|++..+..+- .|..-..|+++|+.+++........+.-.+-+|.|++++|
T Consensus       432 ngnv------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         432 NGNV------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             CCCe------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence            9875      222233457799999999866665542 1233457999999988876554433334444555555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.29  E-value=3.7e-09  Score=99.63  Aligned_cols=259  Identities=15%  Similarity=0.247  Sum_probs=173.7

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCC--EE-EEEEcCCCCEEEEEecCCeEEEEeCCCcee-eEEecCCCcccEEEEEeCC
Q 012679          161 STVYLWDASDGTTSELVTVDDENGP--VT-SVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-LRTLRGGHRSRVGSLAWNN  236 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~--V~-~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~~  236 (458)
                      +.+.+||..+|.+  +..+.....+  .. -+.|+-+.+|+|--..+ .++|+++ +... ...+..-....|...+|.+
T Consensus       108 n~~~vwd~~sg~i--v~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         108 NNVFVWDIASGMI--VFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             CceeEEeccCcee--EeeccccCCcccccceeeeeecchhhhhhccC-eEEEEec-CCccccCchhhccccceeeEEecC
Confidence            4799999999998  5555544433  44 67899988887766333 7999997 3322 1112111224566666643


Q ss_pred             ----CeEEE-----EeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-----------CCCcEEEEeC
Q 012679          237 ----HILTT-----GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-----------NDNLLHIWDR  296 (458)
Q Consensus       237 ----~~l~s-----g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-----------~dg~i~iwd~  296 (458)
                          ..|+.     ++..+.+++|.+.....+ .+-.-....-+.+.|.+.|++|+.--           ....++|+++
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence                33333     356788999998755432 22222233446799999999876421           1356788887


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                      .....       .....-.++|...+|.|.+..+.+.. |..+-.+.++|++..  +...-....-..+.|+|.++++++
T Consensus       263 ~e~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~  332 (561)
T COG5354         263 TERSI-------PVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILF  332 (561)
T ss_pred             ccccc-------ceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEE
Confidence            74433       22225578999999999866655544 568999999999876  444444555677889999999988


Q ss_pred             Ee-cCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcCCCCEEEEEe------CCCcEEEEecCCCC
Q 012679          377 SH-GFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSPDGCTVASAA------ADETLRFWNVFGAP  436 (458)
Q Consensus       377 ~~-g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s------~Dg~i~iW~~~~~~  436 (458)
                      +. |...|.+.+||......+. .+.+...  ..+.|+|||+++.+..      .|..|.||++.+..
T Consensus       333 agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         333 AGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            62 3346889999998766555 6665443  4578999999988764      37889999997654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.29  E-value=5.4e-09  Score=102.12  Aligned_cols=268  Identities=15%  Similarity=0.108  Sum_probs=168.0

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG  230 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  230 (458)
                      .+.+++++.++.|+.+|..+|+.  +..............  .++..+++++.+|.|..+|..+|+.+..... ......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~  139 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKR--LWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSEVLS  139 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcE--eeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cceeec
Confidence            46788888889999999999987  443332222111222  2567888999999999999999998877663 222122


Q ss_pred             EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       231 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      .....+..++.++.+|.|..+|.++++... ........+     .+...  .+..++.+..++.+..+|.+++...   
T Consensus       140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~---  213 (377)
T TIGR03300       140 PPLVANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL---  213 (377)
T ss_pred             CCEEECCEEEEECCCCeEEEEEcCCCceee-EEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe---
Confidence            223356678888899999999998876432 222111111     11111  2346778888899999998887641   


Q ss_pred             eeeeeecccc--c------ce-eEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679          306 QWLHRLEEHT--S------AV-KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       306 ~~~~~~~~h~--~------~v-~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                       +...+....  .      .+ ....+.  +..+++++   .++.++.||..+|+.+........ ....  ..+..+++
T Consensus       214 -W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv  284 (377)
T TIGR03300       214 -WEQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV  284 (377)
T ss_pred             -eeeccccCCCCCchhhhhccCCccEEE--CCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE
Confidence             111111000  0      00 011111  34455543   789999999999998877654321 1122  24566666


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      .  ..+|.+..+|..+++.+......... ......  .+..|++++.||.|+++|..+++...+..
T Consensus       285 ~--~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       285 T--DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             E--CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            3  47899999999999887665322211 122222  46688899999999999998888776544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.28  E-value=3.4e-09  Score=103.56  Aligned_cols=256  Identities=16%  Similarity=0.096  Sum_probs=159.7

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE-
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV-  229 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v-  229 (458)
                      .+.+++++.++.|+.+|..+|+.  +..... .+.+.+.-.. .+..+++++.+|.|..||.++++.+..+.. ....+ 
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~--~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~  179 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKE--LWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALT  179 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcE--eeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCcee
Confidence            46678888899999999999987  333322 1222221111 355778888899999999999998887764 21111 


Q ss_pred             ----EEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc---c---eEeEEEcC--CCCEEEEEECCCcEEEEeCC
Q 012679          230 ----GSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ---E---VCGLKWSA--SGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       230 ----~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~---~---v~~l~~sp--d~~~l~sg~~dg~i~iwd~~  297 (458)
                          .+....+..++.+..+|.+..+|.+++......-.....   .   ...+.-+|  .+..++.++.+|.++.||..
T Consensus       180 ~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       180 LRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             ecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence                111223457888888999999999887643221111000   0   00010111  35678888889999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCC-eEEEEEcCCCCeEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQ-VCALLWNKNERELL  375 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~-v~~~~~s~~~~~l~  375 (458)
                      +++.      +.....  ......+.  .+..+++. +  .||.|..+|..+|+.+.... .... ..+...  .+..++
T Consensus       260 tG~~------~W~~~~--~~~~~p~~--~~~~vyv~-~--~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~  324 (377)
T TIGR03300       260 SGRV------LWKRDA--SSYQGPAV--DDNRLYVT-D--ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLV  324 (377)
T ss_pred             CCcE------EEeecc--CCccCceE--eCCEEEEE-C--CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEE
Confidence            7754      222221  11112222  23455543 3  79999999999999887653 2222 222222  355666


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCCCcEEEE
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF-MAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      +  +..+|.|.++|..+++.+.++..+...+.. .++. ++ .|+.++.||.|..|
T Consensus       325 ~--~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       325 V--GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             E--EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            6  458999999999999999988866644322 2222 33 57789999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.26  E-value=1.4e-08  Score=108.30  Aligned_cols=271  Identities=15%  Similarity=0.249  Sum_probs=171.8

Q ss_pred             CCeEEEEcCCEEEEE----ECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--------------
Q 012679          152 SNVLAIALGSTVYLW----DASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--------------  213 (458)
Q Consensus       152 ~~~la~~~d~~v~iw----d~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--------------  213 (458)
                      +.++.+..+|.|.+.    +..+..++.+-.+   ...|.+++||||+..||..+.+|+|.+-+-.              
T Consensus        88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~  164 (928)
T PF04762_consen   88 ESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF  164 (928)
T ss_pred             CcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence            568888889999999    7777776656555   4579999999999999999999988876411              


Q ss_pred             -C--------ceeeEEecC--------------------C---CcccEEEEEe--CCCeEEEEeC---C---CcEEEEEc
Q 012679          214 -A--------NRQLRTLRG--------------------G---HRSRVGSLAW--NNHILTTGGM---D---GLIINNDV  253 (458)
Q Consensus       214 -~--------~~~~~~~~~--------------------~---~~~~v~~l~~--~~~~l~sg~~---d---g~i~vwd~  253 (458)
                       .        |+.-..|++                    +   +...-..|+|  ||.++++.+.   .   ..|+||+-
T Consensus       165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R  244 (928)
T PF04762_consen  165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR  244 (928)
T ss_pred             CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC
Confidence             0        111111111                    0   2224457889  6788888764   2   46888986


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      + +. +..+...-.+--.+++|.|.|++||+.-.   ...|.+|.-+.....   ++...+......|..++|++++.-|
T Consensus       245 e-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg---eF~l~~~~~~~~v~~l~Wn~ds~iL  319 (928)
T PF04762_consen  245 E-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG---EFTLRFDPEEEKVIELAWNSDSEIL  319 (928)
T ss_pred             C-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee---eEecCCCCCCceeeEEEECCCCCEE
Confidence            5 22 22222222333446899999999998865   456777775543321   1122233456789999999975544


Q ss_pred             EEEeCCCCCCeEEEEECCCCCee--EEEe--CCCCeEEEEEcCCCCe-EEEEecCCCCcEEEEeC----CCc--------
Q 012679          331 LATGGGGGDRCIKFWNTHTGACL--NSVD--TGSQVCALLWNKNERE-LLSSHGFTQNQLTLWKY----PSM--------  393 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~~~~~--~~~~--~~~~v~~~~~s~~~~~-l~~~~g~~d~~i~iwd~----~~~--------  393 (458)
                       |..-  .| .|.+|-..+....  +.+.  ....+..+.|+|.... |.+.+  .+|.+..+++    ..+        
T Consensus       320 -Av~~--~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t--~~g~~~~~~~~~~v~~s~~~~~~D~  393 (928)
T PF04762_consen  320 -AVWL--ED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT--SNGQYEIYDFAWDVSRSPGSSPNDN  393 (928)
T ss_pred             -EEEe--cC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe--cCCcEEEEEEEEEEEecCCCCccCc
Confidence             4442  34 4999998886532  3333  2344566999996544 33322  3355544332    111        


Q ss_pred             eeeEEEe-----------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          394 VKMAELS-----------------------GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       394 ~~~~~~~-----------------------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ..+..+.                       .-...|.+++|++++..+++-..||.|.+|......
T Consensus       394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence            0111111                       124679999999999889999999999999965543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=3.2e-11  Score=127.77  Aligned_cols=185  Identities=16%  Similarity=0.239  Sum_probs=148.1

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      -..++++.||.|++|....++........+. ..|+.+.|+.+|+.+.++..||.+.+|.+. .+.....+. |......
T Consensus      2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~D 2297 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSD 2297 (2439)
T ss_pred             ceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccc
Confidence            3578999999999999988876545555554 889999999999999999999999999977 555666666 9999999


Q ss_pred             EEeCCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          232 LAWNNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       232 l~~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      +.|=+..+++++   .++.+.+||.-........-..|.+.++++++-|..++|++||.+|.|++||++..+.      +
T Consensus      2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql------~ 2371 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL------R 2371 (2439)
T ss_pred             eeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH------H
Confidence            999778888775   4689999997544332223378999999999999999999999999999999987665      4


Q ss_pred             eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      +.+..         +.  ....+++|+  ..|.|+||++..-..++++..
T Consensus      2372 h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2372 HTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             HHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCch
Confidence            44433         33  466777766  999999999998877776643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.25  E-value=5e-10  Score=98.44  Aligned_cols=228  Identities=17%  Similarity=0.204  Sum_probs=147.4

Q ss_pred             CeEEEEcCCEEEEEECCCCCe-eeEEEecCCCC---CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE--EecCCCc
Q 012679          153 NVLAIALGSTVYLWDASDGTT-SELVTVDDENG---PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR--TLRGGHR  226 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~---~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~--~~~~~~~  226 (458)
                      +++-+-..|.|.++....... ..+..+..-.-   ...++.|++.+..++++..+|.+.+-+........  ..+. |.
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He  165 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HE  165 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-cc
Confidence            345555678888887553322 11111211111   24578899999999999999999966655544333  6666 99


Q ss_pred             ccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCC
Q 012679          227 SRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       227 ~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      .++....|   +++++.+|+.||.+..||++.....+ ...+-|...|++|.-+| .+.++++|+.|-.|++||.++...
T Consensus       166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            99999988   47899999999999999999554333 44667999999999887 688999999999999999996544


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCc-EEEEeCCCCCCeEEEEECCCCCee--EEEe----CCCCeEEEEEcCCCCeE
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSN-LLATGGGGGDRCIKFWNTHTGACL--NSVD----TGSQVCALLWNKNEREL  374 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~-ll~s~~g~~d~~i~lwd~~~~~~~--~~~~----~~~~v~~~~~s~~~~~l  374 (458)
                      +     +..- .-.+.|..+.++|.... +++++   .-+-.++-+...+...  ..+.    +.+-...-.|.....++
T Consensus       246 P-----l~~~-~v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l  316 (339)
T KOG0280|consen  246 P-----LFKA-KVGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL  316 (339)
T ss_pred             c-----cccC-ccccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeecccccccccee
Confidence            2     2222 23488999999996543 33333   3344566666554322  1111    12223344454443445


Q ss_pred             EEEecCCCCcEE-EEeCC
Q 012679          375 LSSHGFTQNQLT-LWKYP  391 (458)
Q Consensus       375 ~~~~g~~d~~i~-iwd~~  391 (458)
                      +++ .+-|+.++ +|-.-
T Consensus       317 ATC-sFYDk~~~~~Wl~~  333 (339)
T KOG0280|consen  317 ATC-SFYDKKIRQLWLHI  333 (339)
T ss_pred             eee-eccccceeeeeeec
Confidence            554 34455533 66443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=8.1e-11  Score=124.81  Aligned_cols=197  Identities=15%  Similarity=0.319  Sum_probs=158.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH  258 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~  258 (458)
                      .+-..|.++.-+|...+-++|+.||.|++|....+..+..++....++|+.+.|+  |+.+..+..||.+.+|.+.  ..
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PK 2283 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Cc
Confidence            3456688998899888999999999999999999998888886566899999994  8999999999999999986  44


Q ss_pred             eEEEEcccccceEeEEEcCCCCEEEEEE---CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          259 IVETYRGHNQEVCGLKWSASGQQLASGG---NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      +....+.|......+.|-.  ..+++++   .++.+.+||.......   .+++  ..|.+.++++++.| ...++++||
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~---s~v~--~~H~~gaT~l~~~P-~~qllisgg 2355 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN---SLVH--TCHDGGATVLAYAP-KHQLLISGG 2355 (2439)
T ss_pred             ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc---ceee--eecCCCceEEEEcC-cceEEEecC
Confidence            5677788998888888865  5667665   4788999997655432   1234  68999999999999 477888877


Q ss_pred             CCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679          336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                        .+|.|++||++..+.++.+..        ++ ...+++.  |...|.|+||++.....+.++.
T Consensus      2356 --r~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~--~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2356 --RKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVT--GSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             --CcCcEEEeehHHHHHHHHhhh--------hh-hhheeec--cCcccceEEEEccccchhhcCc
Confidence              999999999998887776654        44 4455555  7789999999999887777664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=4.5e-09  Score=100.15  Aligned_cols=251  Identities=14%  Similarity=0.227  Sum_probs=164.8

Q ss_pred             eeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCC--CEEEE-----EecCCeEEEEeCCCcee
Q 012679          146 LLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG--RHIAI-----GLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       146 ~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g--~~la~-----g~~dg~v~iwd~~~~~~  217 (458)
                      +..|+. +.+++--..+.|++|+..+.+. ....  -|...|+...+||.+  ..+|+     ++.-+.|+||.......
T Consensus       130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~-~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  130 VPQFSIDESLAARLVSNEVQFYDLGSFKT-IQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             ccccccchhhhhhhhcceEEEEecCCccc-eeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            345665 4466666689999999887442 1222  346679999999863  34544     24445799998763222


Q ss_pred             eEEe--cCCCcccEEEEEeC--C-CeEEEEe--CC---------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679          218 LRTL--RGGHRSRVGSLAWN--N-HILTTGG--MD---------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       218 ~~~~--~~~~~~~v~~l~~~--~-~~l~sg~--~d---------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~  281 (458)
                      -..+  +.-....-..+.|+  + .+|+.++  -|         .++++.++. +......+ ...++|.++.|+|+++.
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCE
Confidence            1111  11122334467786  2 3443332  23         257777776 33222222 34789999999999998


Q ss_pred             EEEE--ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679          282 LASG--GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG  359 (458)
Q Consensus       282 l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~  359 (458)
                      ++++  -.-..+.|+|++...       +..+  ..++=.++-|+|.|..++++|-|..-|.|.+||+.+.+++..+...
T Consensus       285 F~VvyGfMPAkvtifnlr~~~-------v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~  355 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLRGKP-------VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA  355 (566)
T ss_pred             EEEEEecccceEEEEcCCCCE-------eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence            8664  446789999987642       3333  4567788999999999999998989999999999998888777543


Q ss_pred             CCeEEEEEcCCCCeEEEEecC----CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          360 SQVCALLWNKNERELLSSHGF----TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       360 ~~v~~~~~s~~~~~l~~~~g~----~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                       .-+-+.|+|+|.++++++..    -|+.++||++.. ..+....- ......+.|-|
T Consensus       356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f-~sEL~qv~W~P  410 (566)
T KOG2315|consen  356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMF-KSELLQVEWRP  410 (566)
T ss_pred             -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhh-hHhHhheeeee
Confidence             34567899999999998754    388999999853 33322111 11355666665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=2.8e-08  Score=107.89  Aligned_cols=244  Identities=11%  Similarity=0.100  Sum_probs=157.3

Q ss_pred             EEEEEcCC-CCEEEEEecCCeEEEEeCCCceeeEEecC-CC------------cccEEEEEeC--CCeEEEEe-CCCcEE
Q 012679          187 TSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQLRTLRG-GH------------RSRVGSLAWN--NHILTTGG-MDGLII  249 (458)
Q Consensus       187 ~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~------------~~~v~~l~~~--~~~l~sg~-~dg~i~  249 (458)
                      ..++++++ |.++++-+.++.|++||... ..+..+.. +.            -.....++++  ++.|+++. ....|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 55666667788899999764 44443332 11            1234667774  55555554 456789


Q ss_pred             EEEccCCCeeEEEEccc-----------------ccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcce--eee
Q 012679          250 NNDVRVRDHIVETYRGH-----------------NQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQ--WLH  309 (458)
Q Consensus       250 vwd~~~~~~~~~~~~~h-----------------~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~  309 (458)
                      ++|+.++.  +.++.+.                 -..-.+++++| ++.++++.+.++.|++||...+.......  ...
T Consensus       650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            99986543  3333210                 11235789999 56666777788999999987653210000  000


Q ss_pred             eecc------cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-----------C-----------CCC
Q 012679          310 RLEE------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-----------T-----------GSQ  361 (458)
Q Consensus       310 ~~~~------h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-----------~-----------~~~  361 (458)
                      ...+      .-.....|+++|++..++++..  .++.|++||+.++.......           .           ...
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence            0001      1123567999999887888776  78999999998775322110           0           012


Q ss_pred             eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-------------CCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679          362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-------------GHTSRVLFMAQSPDGCTVASAAADETLR  428 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~i~  428 (458)
                      ...++++++|..+++  ...++.|++||..++.......             +.-.....|+++++|+.+++-+.++.|+
T Consensus       806 P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        806 PLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             CceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence            458899999986666  4478999999998776543221             1123577899999999999888999999


Q ss_pred             EEecCCCCc
Q 012679          429 FWNVFGAPQ  437 (458)
Q Consensus       429 iW~~~~~~~  437 (458)
                      +||+.++..
T Consensus       884 vid~~~~~~  892 (1057)
T PLN02919        884 YLDLNKGEA  892 (1057)
T ss_pred             EEECCCCcc
Confidence            999987654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=6.3e-09  Score=93.51  Aligned_cols=243  Identities=12%  Similarity=0.221  Sum_probs=158.0

Q ss_pred             cceeec--cCCCeEEEEcCCEEEEEECCC---CCeeeEEEecCC------------CCCEEEEEEcCCCC--EEEEEecC
Q 012679          144 LNLLDW--GSSNVLAIALGSTVYLWDASD---GTTSELVTVDDE------------NGPVTSVNWAPDGR--HIAIGLNN  204 (458)
Q Consensus       144 ~~~~~~--~~~~~la~~~d~~v~iwd~~~---~~~~~~~~~~~h------------~~~V~~v~~s~~g~--~la~g~~d  204 (458)
                      +.++.+  .++.+++|..+|.|.++.-+.   ++..-...+..|            ...|..+.|.++++  .++..+.|
T Consensus        28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd  107 (433)
T KOG1354|consen   28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND  107 (433)
T ss_pred             eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence            334444  346788888899999996432   211112223222            34688999998654  67778899


Q ss_pred             CeEEEEeCCCce-----------------------------------eeEEecCCCcccEEEEEeCC-CeEEEEeCCCcE
Q 012679          205 CQVQLWDSTANR-----------------------------------QLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLI  248 (458)
Q Consensus       205 g~v~iwd~~~~~-----------------------------------~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i  248 (458)
                      .+|++|.+....                                   +.+.+...|.--|.+++++. ...+....|=.|
T Consensus       108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRI  187 (433)
T KOG1354|consen  108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRI  187 (433)
T ss_pred             cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceee
Confidence            999999764321                                   11223336888889999953 334444566789


Q ss_pred             EEEEccCCCeeEE--EEcc-----cccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCC-----c-----ceeeee
Q 012679          249 INNDVRVRDHIVE--TYRG-----HNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNS-----V-----TQWLHR  310 (458)
Q Consensus       249 ~vwd~~~~~~~~~--~~~~-----h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~-----~-----~~~~~~  310 (458)
                      .+|.++.......  -++.     -..-|++..|+| ..+.|+..+..|+|++-|++....-.     .     .....-
T Consensus       188 NLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf  267 (433)
T KOG1354|consen  188 NLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF  267 (433)
T ss_pred             eeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh
Confidence            9999876543222  2222     234588999999 46788888999999999998532200     0     000111


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEEC-CCCCeeEEEeCCC----------------CeEEEEEcCCCC
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNT-HTGACLNSVDTGS----------------QVCALLWNKNER  372 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~-~~~~~~~~~~~~~----------------~v~~~~~s~~~~  372 (458)
                      +.+--..|..+.|++.|.++++     .| -+|++||+ ...+++.++..+.                .-..++|+.++.
T Consensus       268 fseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  268 FSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             HHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence            2233456889999998777775     44 78999999 4566666664322                134678999998


Q ss_pred             eEEEEecCCCCcEEEEeCCCc
Q 012679          373 ELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      .+++  |.-.+.+++|+...+
T Consensus       343 ~v~T--Gsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  343 YVMT--GSYNNVFRVFNLARG  361 (433)
T ss_pred             eEec--ccccceEEEecCCCC
Confidence            9888  778889999996433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=4.8e-08  Score=93.09  Aligned_cols=280  Identities=13%  Similarity=0.171  Sum_probs=177.8

Q ss_pred             ccccceeeccCC-CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-----------CCeEE
Q 012679          141 DYYLNLLDWGSS-NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-----------NCQVQ  208 (458)
Q Consensus       141 d~~~~~~~~~~~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-----------dg~v~  208 (458)
                      .+.-+-+.|+|. ..++.---..|.+|--++-..  +..+. |. .|.-+.|||..+||++-+.           ...+.
T Consensus       210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r--~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~  285 (698)
T KOG2314|consen  210 NWTETYVRWSPKGTYLVTFHKQGIALWGGESFDR--IQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI  285 (698)
T ss_pred             cceeeeEEecCCceEEEEEeccceeeecCccHHH--HHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence            445566889984 444444556788996554332  44443 54 4899999999999998642           14799


Q ss_pred             EEeCCCceeeEEecCC--CcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEE
Q 012679          209 LWDSTANRQLRTLRGG--HRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS  284 (458)
Q Consensus       209 iwd~~~~~~~~~~~~~--~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s  284 (458)
                      |||+.+|...+.+...  ....-.-+.|  +++++|.-.. ..|.||+...-. ++..-.-.-..|....|+|.+++||.
T Consensus       286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             EEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEEE
Confidence            9999999998888751  1111123345  6778777666 568889876422 12111123456888999999888876


Q ss_pred             EECC-----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC-------CCCCeEEEEECCCC-C
Q 012679          285 GGND-----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-------GGDRCIKFWNTHTG-A  351 (458)
Q Consensus       285 g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~lwd~~~~-~  351 (458)
                      -...     ..+.+-.+.+.+.      +.+..-|.-.=..+-|-..|.+|.+-...       +.-..+.|+.++.. -
T Consensus       364 wtpe~~~~parvtL~evPs~~~------iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI  437 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKRE------IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI  437 (698)
T ss_pred             EcccccCCcceEEEEecCccce------eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence            4321     2344544444433      33322333333456676665555442210       01123556666543 3


Q ss_pred             eeEEEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEeCCC----ceeeEEEeCCCCcEEEEEEcCCCCEEEEEe---C
Q 012679          352 CLNSVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWKYPS----MVKMAELSGHTSRVLFMAQSPDGCTVASAA---A  423 (458)
Q Consensus       352 ~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd~~~----~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---~  423 (458)
                      ++..+.....|...+|-|.|..+++.+|.. ..++.+|.+.+    ...+..+..  ...+.+.|+|.|++++.++   .
T Consensus       438 pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~  515 (698)
T KOG2314|consen  438 PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSR  515 (698)
T ss_pred             CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEeccc
Confidence            566677788899999999999999887754 35788898873    223334432  4467899999999998775   4


Q ss_pred             CCcEEEEecCC
Q 012679          424 DETLRFWNVFG  434 (458)
Q Consensus       424 Dg~i~iW~~~~  434 (458)
                      .|.+.++|...
T Consensus       516 ~g~l~F~D~~~  526 (698)
T KOG2314|consen  516 RGDLEFYDTDY  526 (698)
T ss_pred             ccceEEEecch
Confidence            68999999985

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.09  E-value=8.1e-09  Score=91.59  Aligned_cols=240  Identities=15%  Similarity=0.296  Sum_probs=167.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----eeEEecCCCc------------ccEEEEEe-C---CCeEEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGHR------------SRVGSLAW-N---NHILTT  241 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~~------------~~v~~l~~-~---~~~l~s  241 (458)
                      .+.|++|.|...|.||++|...|.|.+|.-+...     ....+++ |.            ..|..+.| +   ...++.
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            5679999999999999999999999999754332     1222333 32            45778888 1   356777


Q ss_pred             EeCCCcEEEEEccCCCe------------------------------------eE-----EEE-cccccceEeEEEcCCC
Q 012679          242 GGMDGLIINNDVRVRDH------------------------------------IV-----ETY-RGHNQEVCGLKWSASG  279 (458)
Q Consensus       242 g~~dg~i~vwd~~~~~~------------------------------------~~-----~~~-~~h~~~v~~l~~spd~  279 (458)
                      .+.|.+|++|.+.....                                    ++     +.+ ..|...|.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78899999998864310                                    00     111 3677788999999988


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc-----ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-
Q 012679          280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH-----TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-  353 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-  353 (458)
                      ..++++ .|-.|.+|++........   +..++.|     ..-|++..|+|...+++.-.+  ..|.|++-|++..... 
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFn---IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcd  258 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFN---IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCD  258 (460)
T ss_pred             heeeec-cceeeeeccccccCCceE---EEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhcc
Confidence            888776 568899999876554211   3333444     346889999998777776655  7899999999843211 


Q ss_pred             -----E--EEe---------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeEEEeCCC------------C
Q 012679          354 -----N--SVD---------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMAELSGHT------------S  404 (458)
Q Consensus       354 -----~--~~~---------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~~~~~h~------------~  404 (458)
                           .  .++         .-+.|..+.|+++|+++++-   +-.+++|||.... .++.++.-|.            .
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR---dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD  335 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR---DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND  335 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe---ccceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence                 0  111         12457889999999999973   4578999999753 4555554342            2


Q ss_pred             cE---EEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          405 RV---LFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       405 ~V---~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      .|   ..+.||-|...+++|+.....-|+-+
T Consensus       336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             ceeeeEEEEecCCcccccccccccceeeecc
Confidence            22   34778888888999988877777763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=4.6e-09  Score=102.59  Aligned_cols=237  Identities=16%  Similarity=0.286  Sum_probs=163.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee---------------eEEecCCCcccEEEEEeC--CCeEEEEeCC
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ---------------LRTLRGGHRSRVGSLAWN--NHILTTGGMD  245 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~v~~l~~~--~~~l~sg~~d  245 (458)
                      .....|++|+.+..|+|+|+.||.++|..+.+...               -+++.+ |...|.-+.||  ...|.+...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCC
Confidence            45689999999999999999999999997765321               123444 99999999996  5789999999


Q ss_pred             CcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679          246 GLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC  324 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  324 (458)
                      |.|.+|-+-.+..+...+. ...+-|.+++|+.||..++..-.||.|.+=.+.....     +-..+++  .....+.|+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-----wgKeLkg--~~l~hv~ws  165 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-----WGKELKG--QLLAHVLWS  165 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-----cchhcch--heccceeec
Confidence            9999999877654322222 3456789999999999999999999998766654432     1112222  123468899


Q ss_pred             CCCCcEEEEeCCCCCCeEEEEECCCC-------CeeEEEe-----CCCCeEEEEEc--------CCCCeEEEEecCCCCc
Q 012679          325 PFQSNLLATGGGGGDRCIKFWNTHTG-------ACLNSVD-----TGSQVCALLWN--------KNERELLSSHGFTQNQ  384 (458)
Q Consensus       325 p~~~~ll~s~~g~~d~~i~lwd~~~~-------~~~~~~~-----~~~~v~~~~~s--------~~~~~l~~~~g~~d~~  384 (458)
                      +|...+++.-   ..|.+.++|....       .+.....     .+..+..+.|.        |+...+++  .+.+|.
T Consensus       166 ~D~~~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr  240 (1189)
T KOG2041|consen  166 EDLEQALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGR  240 (1189)
T ss_pred             ccHHHHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCce
Confidence            9877766633   7899999997642       1211111     12336666664        36667777  447888


Q ss_pred             EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEecC
Q 012679          385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD---------ETLRFWNVF  433 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---------g~i~iW~~~  433 (458)
                      +.|..-.+......+. ..-.|....|+++|..|+.+|.|         +.|.++.-.
T Consensus       241 ~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY  297 (1189)
T ss_pred             ehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence            8776554432222222 22568899999999999999865         256666544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.07  E-value=2e-08  Score=90.37  Aligned_cols=250  Identities=15%  Similarity=0.231  Sum_probs=175.9

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe-CCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD-STANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIIN  250 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd-~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~v  250 (458)
                      ..+..++||.+.|++...-|-..-+++.+.|.+++||- .+.++.-..+......+++++++.  ...|+.|-..|++.-
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            33567789999999999988777899999999999994 455665555554456778888885  478899999999988


Q ss_pred             EEccCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          251 NDVRVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       251 wd~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      +.+...-   ...+....|...|..+-|+....++++.+.|..+.---.+.+.....    ..+..   .-.++.+.-  
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~----Y~~~~---~~t~~~~d~--  165 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG----YNFET---PASALQFDA--  165 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc----eEeec---cCCCCceee--
Confidence            8765332   23456678999999999999999999999987765433333322100    00100   001111110  


Q ss_pred             CcEEEEeCCCCCCeEEEEEC--CCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCC
Q 012679          328 SNLLATGGGGGDRCIKFWNT--HTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHT  403 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~  403 (458)
                      . ....  |...|.|..-.+  ..-..+.++. +...+.++.|.+....+++  |..|..+.+||+.-.+ ...++.+|.
T Consensus       166 ~-~~fv--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh~  240 (404)
T KOG1409|consen  166 L-YAFV--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGHN  240 (404)
T ss_pred             E-EEEe--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccch
Confidence            0 1222  224444444332  2233444443 4577999999999999999  7799999999997654 345788999


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      ..|..+..-+--+.+++++.||.|.+|+......
T Consensus       241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            9999999888888999999999999999976543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.06  E-value=3.2e-09  Score=97.38  Aligned_cols=159  Identities=17%  Similarity=0.213  Sum_probs=108.6

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEeCCCcee----eEEecCCCcccEEEEEe--CCCeEEEEeC---CCcEEEEEccCC
Q 012679          186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ----LRTLRGGHRSRVGSLAW--NNHILTTGGM---DGLIINNDVRVR  256 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~----~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~  256 (458)
                      +..+..++++++||++..+....+++......    +....  -..+-.++.+  .......+..   ...+.+|....+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            44556778888999988887776776654332    22221  2222233333  2233333333   344445554432


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee-ecccccceeEEEecCCCCcEEEEeC
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                        ....+.||-..++.++|+||+++|+++..|..|+|-.+.....      +.. .-+|..-|..++.-++  ++|+++|
T Consensus       143 --~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~------IesfclGH~eFVS~isl~~~--~~LlS~s  212 (390)
T KOG3914|consen  143 --RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV------IESFCLGHKEFVSTISLTDN--YLLLSGS  212 (390)
T ss_pred             --CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc------hhhhccccHhheeeeeeccC--ceeeecC
Confidence              2356679999999999999999999999999999977665443      333 3479999999999884  5577766


Q ss_pred             CCCCCeEEEEECCCCCeeEEEeC
Q 012679          336 GGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                        .|++|++||+.+|+++.+++.
T Consensus       213 --GD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  213 --GDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             --CCCcEEEEecccCCcccccch
Confidence              799999999999999877654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.06  E-value=1.7e-07  Score=81.78  Aligned_cols=231  Identities=11%  Similarity=-0.019  Sum_probs=152.4

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE---EeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc--
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL---AWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ--  268 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~--  268 (458)
                      ...+||.|+..|.+.+|...+.+....+-..|...|.-+   +-....+..++.|.++++.++..+..   ....|..  
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~h~~~~  159 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAVHNQNL  159 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc---cceeecccc
Confidence            456899999999999999987664433332244433322   22345577778888888888765432   1112333  


Q ss_pred             ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      .+.++++++|++++++.+....|..|.+.........   .........-.+..|+. ....+|++.  .||++.+||++
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~s~-~~~~FAv~~--Qdg~~~I~DVR  233 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSFSE-NDLQFAVVF--QDGTCAIYDVR  233 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeeecc-CcceEEEEe--cCCcEEEEEec
Confidence            3889999999999999999999999998776542111   12222333445778887 466777776  99999999999


Q ss_pred             CCCeeE-EE-----eCCCCeEEEEEcCCCC--eEEEEecCCCCcEEEEeCCCceeeEEEeC-------CC-CcEEEEEEc
Q 012679          349 TGACLN-SV-----DTGSQVCALLWNKNER--ELLSSHGFTQNQLTLWKYPSMVKMAELSG-------HT-SRVLFMAQS  412 (458)
Q Consensus       349 ~~~~~~-~~-----~~~~~v~~~~~s~~~~--~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-------h~-~~V~~l~~s  412 (458)
                      ...... ..     .+.+.+..+.|++.|.  .|+.+-  .-+.+.+.|++++.....+..       |. ..|..-.|+
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~  311 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE--HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN  311 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec--CcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence            754322 22     3456789999998653  344432  456899999998876554432       32 237778888


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCC
Q 012679          413 PDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       413 pdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      .++..+.+.+++ .+.=|++....
T Consensus       312 ~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  312 NENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             CCCcccccccch-hhheeeccccc
Confidence            887777666655 45567765443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.06  E-value=6.9e-07  Score=79.15  Aligned_cols=238  Identities=16%  Similarity=0.250  Sum_probs=131.0

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCee--eEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTS--ELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS  227 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~--~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~  227 (458)
                      .++++|+-.|..|.|-...+.-..  ..+.+. ...-.-.-++||||+..||.+...|+|+++|+.. ..+..+...+. 
T Consensus         8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~-   85 (282)
T PF15492_consen    8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMS-   85 (282)
T ss_pred             CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccc-
Confidence            478999999999999987764221  222232 2223467899999999999999999999999876 34445543121 


Q ss_pred             cEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC------CCEEEEEECCCcEEEEeCCCCCC
Q 012679          228 RVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS------GQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       228 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd------~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                            +.+               |+             ...|.++.|.+.      ...|++-..+|.++=|-+..+..
T Consensus        86 ------~~~---------------d~-------------~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~  131 (282)
T PF15492_consen   86 ------FPG---------------DL-------------SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN  131 (282)
T ss_pred             ------cCC---------------cc-------------ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC
Confidence                  101               00             111222222110      12344455566666555432211


Q ss_pred             C-Ccceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCC----------eEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679          302 N-SVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDR----------CIKFWNTHTGACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       302 ~-~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~----------~i~lwd~~~~~~~~~~~~~~~v~~~~~s~  369 (458)
                      . ........+.. +...|.++.++|. ..||++|| ....          -+..|.+-++.+....         ..+.
T Consensus       132 q~y~e~hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG-~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~---------v~~~  200 (282)
T PF15492_consen  132 QGYQENHSFSFSSHYPHGINSAVYHPK-HRLLLVGG-CEQNQDGMSKASSCGLTAWRILSDSPYYKQ---------VTSS  200 (282)
T ss_pred             CcceeeEEEEecccCCCceeEEEEcCC-CCEEEEec-cCCCCCccccccccCceEEEEcCCCCcEEE---------cccc
Confidence            1 11111223333 3678999999995 45555553 1222          1233333332221111         0000


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +...-.     ......+|.+.+.............|..|..||||..||+...+|.|.+|++-.-....+
T Consensus       201 ~~~~~~-----~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  201 EDDITA-----SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             Cccccc-----cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence            000000     011223455444333332233457799999999999999999999999999977655544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=6.9e-07  Score=87.75  Aligned_cols=214  Identities=7%  Similarity=0.011  Sum_probs=131.3

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCE-EEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe--
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH-IAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW--  234 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--  234 (458)
                      ..|++-|.+.... +... .+  +.+..-.|+|||+. ++..+.+   ..|.++|+.+++......  .........|  
T Consensus       169 ~~l~~~d~dg~~~-~~~~-~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SP  242 (419)
T PRK04043        169 SNIVLADYTLTYQ-KVIV-KG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSK  242 (419)
T ss_pred             ceEEEECCCCCce-eEEc-cC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECC
Confidence            3677777765543 2222 22  36889999999985 6654443   468999998887654433  3444555667  


Q ss_pred             CCCeEE-EEeCC--CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceee
Q 012679          235 NNHILT-TGGMD--GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       235 ~~~~l~-sg~~d--g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~  308 (458)
                      ++..|+ +.+.+  ..|.++|+..+.  ...+..+........|+|||+.|+..++ .+  .|++.|+..+..       
T Consensus       243 DG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-------  313 (419)
T PRK04043        243 DGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-------  313 (419)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-------
Confidence            565544 44444  468888887654  2344434433445689999998877664 23  677888876553       


Q ss_pred             eeecccccceeEEEecCCCCcEEEEeCCCC-----C-CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGG-----D-RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ  382 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~-----d-~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d  382 (458)
                      ..+......  ...|+|++..++++.....     . ..|.+.|+.++.... +..........|+|+|+.++.+.....
T Consensus       314 ~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~  390 (419)
T PRK04043        314 EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGN  390 (419)
T ss_pred             EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            122111111  2489999999988875211     1 478889998887543 333334446889999998887653221


Q ss_pred             -CcEEEEeCCC
Q 012679          383 -NQLTLWKYPS  392 (458)
Q Consensus       383 -~~i~iwd~~~  392 (458)
                       ..|.+.++..
T Consensus       391 ~~~L~~~~l~g  401 (419)
T PRK04043        391 QSALGIIRLNY  401 (419)
T ss_pred             cEEEEEEecCC
Confidence             2355566543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=8.4e-07  Score=80.96  Aligned_cols=228  Identities=13%  Similarity=0.137  Sum_probs=153.0

Q ss_pred             CCeEEEEeCCCc--eeeEEecCCCcccEEEEEeC--CCeEEEEeC---CCcEEEEEccCC-Cee--EEEEcccccceEeE
Q 012679          204 NCQVQLWDSTAN--RQLRTLRGGHRSRVGSLAWN--NHILTTGGM---DGLIINNDVRVR-DHI--VETYRGHNQEVCGL  273 (458)
Q Consensus       204 dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~---dg~i~vwd~~~~-~~~--~~~~~~h~~~v~~l  273 (458)
                      +.-|++|++.+.  +.-......+....+-|+|+  ++.|.++..   +|.|..|.+... ..+  +........+-|.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            356999988733  22211122366778888996  456777754   577888877653 221  11111223344889


Q ss_pred             EEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccc----------eeEEEecCCCCcEEEEeCCCCCCeE
Q 012679          274 KWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSA----------VKAIAWCPFQSNLLATGGGGGDRCI  342 (458)
Q Consensus       274 ~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~ll~s~~g~~d~~i  342 (458)
                      +++++|++++++.. -|.|.++-++.......   ......|.+.          +....+.|++..++++.-|  --.|
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri  169 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRI  169 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceE
Confidence            99999999988864 68899999876432111   2222234444          7888999998888887652  3479


Q ss_pred             EEEECCCCCeeE----EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-eeeEEEeCC---------CCcEEE
Q 012679          343 KFWNTHTGACLN----SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-VKMAELSGH---------TSRVLF  408 (458)
Q Consensus       343 ~lwd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-~~~~~~~~h---------~~~V~~  408 (458)
                      .+|++..|....    .+..+.....+.|+|++++..+.+ --+++|.+|.+... ..+.+++.+         ....-.
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence            999999876443    235567789999999999998875 36899999999873 333333322         245678


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEecCCCCc
Q 012679          409 MAQSPDGCTVASAAA-DETLRFWNVFGAPQ  437 (458)
Q Consensus       409 l~~spdg~~l~s~s~-Dg~i~iW~~~~~~~  437 (458)
                      |.++|||++|.++.. ...|-+|.+.....
T Consensus       249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         249 IHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence            899999999987653 34788888876543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=4.9e-09  Score=99.54  Aligned_cols=263  Identities=17%  Similarity=0.284  Sum_probs=171.8

Q ss_pred             CCeEEEEcCCEEEEEECCC-----CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC---
Q 012679          152 SNVLAIALGSTVYLWDASD-----GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG---  223 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~-----~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~---  223 (458)
                      +.+++++.|.+|++|.+..     +.....+++..|..+|.++.|-.+.++++++  ||.|.+||.--++.+..+..   
T Consensus       748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk  825 (1034)
T KOG4190|consen  748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPK  825 (1034)
T ss_pred             cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcc
Confidence            5689999999999999864     2223477888999999999999998888765  88899999888877765432   


Q ss_pred             -CCcccEEEEEe-CCCeEEEE-eCCCcEEEEEccCCCeeE--E--EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          224 -GHRSRVGSLAW-NNHILTTG-GMDGLIINNDVRVRDHIV--E--TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       224 -~~~~~v~~l~~-~~~~l~sg-~~dg~i~vwd~~~~~~~~--~--~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                       +....|.|+.- +..+++.| +...+|+++|.+..+..-  +  ...+...-+.+++..+.|+.++.+-..|.|.+.|.
T Consensus       826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa  905 (1034)
T KOG4190|consen  826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA  905 (1034)
T ss_pred             cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence             12334555544 55666666 778999999998776421  1  12345667899999999999999999999999999


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE-EECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF-WNTHTGACLNSVDTGSQVCALLWNKNERELL  375 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l-wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  375 (458)
                      +++..      +............++- |. ...++...  .|.++.+ |....|......+.......+ ...-|..++
T Consensus       906 R~G~v------INswrpmecdllqlaa-ps-dq~L~~sa--ldHslaVnWhaldgimh~q~kpppepahf-lqsvgpSLV  974 (1034)
T KOG4190|consen  906 RNGKV------INSWRPMECDLLQLAA-PS-DQALAQSA--LDHSLAVNWHALDGIMHLQDKPPPEPAHF-LQSVGPSLV  974 (1034)
T ss_pred             CCCce------eccCCcccchhhhhcC-ch-hHHHHhhc--ccceeEeeehhcCCeeeeccCCCCcchhh-hhccCceeE
Confidence            99876      4433333333444432 32 23333333  6888888 887777655544332211111 112234444


Q ss_pred             EEecCCCCcEEEEeCC-C---ceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679          376 SSHGFTQNQLTLWKYP-S---MVKMAELS--GHTSRVLFMAQSPDGCTVASAAADETLRF  429 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~-~---~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~i  429 (458)
                      ++.  ..+.+.+|.-. .   ...+..++  ...+..++++.-|-..-++.|...|.|.+
T Consensus       975 ~a~--~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  975 TAQ--NGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             Eec--cCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            432  33455555321 1   11111222  23456788888887777777888888875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.00  E-value=1.5e-07  Score=82.02  Aligned_cols=221  Identities=11%  Similarity=0.024  Sum_probs=146.3

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      ...++++|.-|...+|...+.+. .+.....|...|+-+.=.- ..-.+..++.|.++++.+++.+........ ..-.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-cccce
Confidence            35677777899999999987654 2333344444443332111 223466778888888888765544333322 11236


Q ss_pred             EEEEe--CCCeEEEEeCCCcEEEEEccCCCee-EE-EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHI-VE-TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       230 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~-~~-~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      .+++.  ++.++++.+....|..|.+...... +. .....+..-.+..|+.....+|++..||++.|||++....+...
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            67777  5789999999999999998765432 23 22334445567889999999999999999999999987653222


Q ss_pred             eeeeeecccccceeEEEecCCCCc--EEEEeCCCCCCeEEEEECCCCCeeEEEeC--------CCC-eEEEEEcCCCCeE
Q 012679          306 QWLHRLEEHTSAVKAIAWCPFQSN--LLATGGGGGDRCIKFWNTHTGACLNSVDT--------GSQ-VCALLWNKNEREL  374 (458)
Q Consensus       306 ~~~~~~~~h~~~v~~l~~~p~~~~--ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------~~~-v~~~~~s~~~~~l  374 (458)
                      . ..+-..|.++++.+.|++.+..  |+.+-   .-+.+.+.|++++...+.+..        ..+ +...+|+.++..+
T Consensus       242 ~-sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~  317 (344)
T KOG4532|consen  242 I-SSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN  317 (344)
T ss_pred             h-cccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence            1 1233458999999999986543  34443   457899999999986665532        222 5666666666655


Q ss_pred             EEE
Q 012679          375 LSS  377 (458)
Q Consensus       375 ~~~  377 (458)
                      .+.
T Consensus       318 ~v~  320 (344)
T KOG4532|consen  318 DVK  320 (344)
T ss_pred             ccc
Confidence            553

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=9.7e-08  Score=94.43  Aligned_cols=244  Identities=16%  Similarity=0.254  Sum_probs=174.4

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--------------CeEEEEeCCCcEE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--------------HILTTGGMDGLII  249 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--------------~~l~sg~~dg~i~  249 (458)
                      ..-.++.|+|.| +||.|+.. .|.+.|..+-+.+..+.. |...|+.+.|.+              -+|+++...|.|.
T Consensus        16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccccCccc-eEEEecCc-eEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            336788999887 67777766 799999999999999998 999999999921              2678888999999


Q ss_pred             EEEccCCCeeEEEEcccccceEeEEEcC---CC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          250 NNDVRVRDHIVETYRGHNQEVCGLKWSA---SG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       250 vwd~~~~~~~~~~~~~h~~~v~~l~~sp---d~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      +||...... +..+..|..++..++|-+   +. ..|+.-.....|.+|+..+++.      .-+.........|+.+.|
T Consensus        93 l~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   93 LVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             EEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCC
Confidence            999987654 556777888899999876   34 4566667778999999998876      445544556677789999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCC-------CCeeEEEeCC-------------C-------C------eEEEEEcCCCC
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHT-------GACLNSVDTG-------------S-------Q------VCALLWNKNER  372 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~-------~~~~~~~~~~-------------~-------~------v~~~~~s~~~~  372 (458)
                      ....-+..-+  ..|.+.+-+.-.       |+.++.-...             .       .      .-.++|+|.-+
T Consensus       166 fd~rh~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r  243 (1062)
T KOG1912|consen  166 FDSRHFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR  243 (1062)
T ss_pred             CCcceEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence            7665554443  556665554321       1111111000             0       0      12356788776


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEecCCCCccccc
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG--CTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      .++...  -...+.|+|++-...+....-..+.+.-+.+-|++  ..|...-.||.+.||--.......++
T Consensus       244 n~lfi~--~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~  312 (1062)
T KOG1912|consen  244 NILFIT--FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK  312 (1062)
T ss_pred             ceEEEE--eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence            665543  46789999999888888776666666677777765  47888999999999987765555544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=1.5e-09  Score=102.89  Aligned_cols=248  Identities=13%  Similarity=0.168  Sum_probs=157.8

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-------ceeeEEecCCCcccEEEEEeCCCeEEEEeCCC
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-------NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG  246 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-------~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg  246 (458)
                      ..++.+.+|+..|..++--.+.+-+++++.|.+|++|.++.       ..+..++.. |..+|.++.|-...-..++.||
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~ScD~  804 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIASCDG  804 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeeeccC
Confidence            45677889999999998777788899999999999998753       235556666 9999999999544434456689


Q ss_pred             cEEEEEccCCCeeEEEEc-ccccceEeEEEcC--CCCEEE-EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679          247 LIINNDVRVRDHIVETYR-GHNQEVCGLKWSA--SGQQLA-SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       247 ~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~sp--d~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      .|.+||.-.+..+.+... ...+.+..+..-+  +...+. .++...+|+++|.+........+ +-.-.+..+.+++++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k-Vcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK-VCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE-eccCCCCchheeEEE
Confidence            999999865543221111 1112233333333  333443 44778999999998876522211 111234557789999


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEE-EeCCCceeeEEEe
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTL-WKYPSMVKMAELS  400 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~i-wd~~~~~~~~~~~  400 (458)
                      ..+.|+.+.+.-   ..|+|.+.|.++|+.+..+..- .....+ -.|..+.++.+  ..|..+.+ |..-++....+.+
T Consensus       884 Va~~GN~lAa~L---SnGci~~LDaR~G~vINswrpmecdllql-aapsdq~L~~s--aldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  884 VADKGNKLAAAL---SNGCIAILDARNGKVINSWRPMECDLLQL-AAPSDQALAQS--ALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             eccCcchhhHHh---cCCcEEEEecCCCceeccCCcccchhhhh-cCchhHHHHhh--cccceeEeeehhcCCeeeeccC
Confidence            999777666543   6899999999999988766431 111111 12444455542  25777887 8776666555554


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ....+...+.  .-|..|+++.....+.+|.
T Consensus       958 pppepahflq--svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  958 PPPEPAHFLQ--SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             CCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence            3333322211  1355677776666677774

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.6e-06  Score=85.22  Aligned_cols=214  Identities=12%  Similarity=0.022  Sum_probs=133.0

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCC-eEEEEeC---CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNH-ILTTGGM---DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~-~l~sg~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                      .|.+-|..... .+.+.. . .......|  +++ .++..+.   ...|+++|+.+++.  ..+....+......|+|||
T Consensus       170 ~l~~~d~dg~~-~~~~~~-~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVK-G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             eEEEECCCCCc-eeEEcc-C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence            55665654443 333443 2 26677788  455 3554333   35799999987654  2333345556678899999


Q ss_pred             CEEEEEE-C--CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679          280 QQLASGG-N--DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV  356 (458)
Q Consensus       280 ~~l~sg~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~  356 (458)
                      +.|+... .  +..|.++|+..+..       ..+..+........|+|++..++++........|.+.|+.+++..+..
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt  317 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV  317 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence            8776543 2  34688888766542       334444433445689999998888865222337888999888764443


Q ss_pred             eCCCCeEEEEEcCCCCeEEEEecCCC-------CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-C--c
Q 012679          357 DTGSQVCALLWNKNERELLSSHGFTQ-------NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-E--T  426 (458)
Q Consensus       357 ~~~~~v~~~~~s~~~~~l~~~~g~~d-------~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g--~  426 (458)
                      ..+..  ...|+|+|+.++.+....+       ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+ +  .
T Consensus       318 ~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~  393 (419)
T PRK04043        318 FHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSA  393 (419)
T ss_pred             cCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEE
Confidence            32222  3489999999988764321       3688888887754 334332 223358899999988766643 3  3


Q ss_pred             EEEEecCCC
Q 012679          427 LRFWNVFGA  435 (458)
Q Consensus       427 i~iW~~~~~  435 (458)
                      |.+.++.+.
T Consensus       394 L~~~~l~g~  402 (419)
T PRK04043        394 LGIIRLNYN  402 (419)
T ss_pred             EEEEecCCC
Confidence            556666553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.98  E-value=6.3e-07  Score=84.16  Aligned_cols=147  Identities=11%  Similarity=0.157  Sum_probs=114.3

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEeCCCceeeEEecCCC
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-QVQLWDSTANRQLRTLRGGH  225 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-~v~iwd~~~~~~~~~~~~~~  225 (458)
                      ++..++..++.-+.|...|.+...+-.   ..+ +|.+.|.-..+.-+++-++.|..|| .+-|+|..+++..+...  .
T Consensus       327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~---iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~  400 (668)
T COG4946         327 FAVVNGDYIALVSRGKAFIMRPWDGYS---IQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--D  400 (668)
T ss_pred             hccCCCcEEEEEecCcEEEECCCCCee---EEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--C
Confidence            344456777777778888888766654   233 4566799999988888999999999 89999999887655444  5


Q ss_pred             cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC----cEEEEeCCCC
Q 012679          226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN----LLHIWDRSMA  299 (458)
Q Consensus       226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg----~i~iwd~~~~  299 (458)
                      -+.|.++..  +|+.++.+.....|.+.|+.++.. ...-+...+-|+.+.|||+++++|-+--+|    .|+++|+..+
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            677888877  578999999999999999998874 233345567899999999999999876655    6889998775


Q ss_pred             C
Q 012679          300 S  300 (458)
Q Consensus       300 ~  300 (458)
                      +
T Consensus       480 K  480 (668)
T COG4946         480 K  480 (668)
T ss_pred             e
Confidence            4

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.98  E-value=4.6e-07  Score=88.99  Aligned_cols=258  Identities=14%  Similarity=0.034  Sum_probs=156.1

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEE-EEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc-
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTS-VNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR-  228 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~-v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-  228 (458)
                      .+.+++++.++.++.+|.++|+.  +.+.... +.+.+ ...  .+..+++++.+|.|..+|.++|+.+.......... 
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~--~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEV--AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCC--cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence            46778888899999999999987  4443322 22221 111  34567788889999999999999988876421100 


Q ss_pred             ---EEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc---c---ceEeEEEcC--CCCEEEEEECCCcEEEEeCC
Q 012679          229 ---VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN---Q---EVCGLKWSA--SGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       229 ---v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~---~---~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~  297 (458)
                         ..+-...+..++.++.+|.+..+|..+++.....-....   .   ....+.-+|  .+..++.++.+|.+..+|..
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence               011112234677788899999999887764222110000   0   001111222  35567777889999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-C-CCeEEEEEcCCCCeEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-G-SQVCALLWNKNERELL  375 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~  375 (458)
                      +++.    .+...+.    ....+..  .+..+++..   .++.+..+|..+|+.+..... . ....+...  .+..++
T Consensus       275 tG~~----~W~~~~~----~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~  339 (394)
T PRK11138        275 SGQI----VWKREYG----SVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLV  339 (394)
T ss_pred             CCCE----EEeecCC----CccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEE
Confidence            8764    1112111    1112222  234555543   789999999999988765432 1 11222222  245555


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEec
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF-MAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      +  +..+|.|.++|..+++.+...+-....+.. ..+  .+..|+.++.||.|..++.
T Consensus       340 v--~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        340 V--GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             E--EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            5  457899999999999988877643333322 122  2447888899999988764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=3.7e-06  Score=76.92  Aligned_cols=216  Identities=13%  Similarity=0.141  Sum_probs=142.5

Q ss_pred             EEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee-EEEE
Q 012679          188 SVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI-VETY  263 (458)
Q Consensus       188 ~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~  263 (458)
                      ++.|.+ ++.++++-...+.|..|+..+++... +..  .. ...+.+  .+..|+.+...+. .++|+.++... +...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeec
Confidence            578888 67777777778999999998876543 332  12 444444  3566666666554 55588776421 1122


Q ss_pred             c--c-cccceEeEEEcCCCCEEEEEECC--------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          264 R--G-HNQEVCGLKWSASGQQLASGGND--------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       264 ~--~-h~~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      .  . .....+.+++.++|++.++....        |.|..++.. ++       +..+...-.....|+|+|++..|++
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-------~~~~~~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-------VTVVADGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-------EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-------EEEEecCcccccceEECCcchheee
Confidence            1  1 34568899999999987776654        557777766 32       2222233455689999999888888


Q ss_pred             EeCCCCCCeEEEEECCCCCe-e---EEE-e--CC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC
Q 012679          333 TGGGGGDRCIKFWNTHTGAC-L---NSV-D--TG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS  404 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~-~---~~~-~--~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~  404 (458)
                      +-+  ..+.|..+++..... +   ..+ .  .. .....+++..+|+..++.  ...+.|.+++.. ++.+..+.-...
T Consensus       151 ~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~--~~~~~I~~~~p~-G~~~~~i~~p~~  225 (246)
T PF08450_consen  151 ADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD--WGGGRIVVFDPD-GKLLREIELPVP  225 (246)
T ss_dssp             EET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE--ETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred             ccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE--cCCCEEEEECCC-ccEEEEEcCCCC
Confidence            776  788899999864221 1   112 2  22 237889999999887774  468899999977 888888876666


Q ss_pred             cEEEEEE-cCCCCEEEEE
Q 012679          405 RVLFMAQ-SPDGCTVASA  421 (458)
Q Consensus       405 ~V~~l~~-spdg~~l~s~  421 (458)
                      .+++++| .++...|...
T Consensus       226 ~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  226 RPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             SEEEEEEESTTSSEEEEE
T ss_pred             CEEEEEEECCCCCEEEEE
Confidence            8999999 4666655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.97  E-value=3.3e-07  Score=90.00  Aligned_cols=275  Identities=11%  Similarity=0.040  Sum_probs=162.2

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEE-----EEEEcC--CCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT-----SVNWAP--DGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~-----~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .+.+++.+.++.|+-+|.++|+..=...+......+.     .+.-.|  ++..+++++.+|.+..+|.++|+.+.+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  148 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV  148 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence            4677888888999999999998732222222111000     001111  456788888999999999999999887764


Q ss_pred             CCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc-ceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCC
Q 012679          224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-EVCGLKWSA--SGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       224 ~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                       ......+....+..++.++.+|.+..+|..+++.....-..... .... .-+|  .+..++.++.+|.+..+|..+++
T Consensus       149 -~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~  226 (394)
T PRK11138        149 -AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQ  226 (394)
T ss_pred             -CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence             22212222234567778888999999999988754332211100 0000 0111  23456777888999999988776


Q ss_pred             CCCcceeeeeecccc--c---ceeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679          301 SNSVTQWLHRLEEHT--S---AVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE  373 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~--~---~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  373 (458)
                      ...    ...+....  .   ....+.-+|  .+..+++.+   .++.+..+|..+|+.+......... .+.  ..+..
T Consensus       227 ~~W----~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~-~~~--~~~~~  296 (394)
T PRK11138        227 LIW----QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSVN-DFA--VDGGR  296 (394)
T ss_pred             hhh----eeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCcc-CcE--EECCE
Confidence            521    11111000  0   000111111  234555543   6899999999999988766543321 121  23455


Q ss_pred             EEEEecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      +++  +..++.+..+|..+++.+.....-... ......  .+..|+.++.||.|.+.|..+++...+.
T Consensus       297 vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        297 IYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             EEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            555  337899999999998876544321111 111122  2457788899999999999888776654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=1.2e-06  Score=95.43  Aligned_cols=238  Identities=12%  Similarity=0.130  Sum_probs=147.0

Q ss_pred             eeccC--CCeEEE-EcCCEEEEEECCCCCeeeEEEecC--C------------CCCEEEEEEcCCCCEEEEEec-CCeEE
Q 012679          147 LDWGS--SNVLAI-ALGSTVYLWDASDGTTSELVTVDD--E------------NGPVTSVNWAPDGRHIAIGLN-NCQVQ  208 (458)
Q Consensus       147 ~~~~~--~~~la~-~~d~~v~iwd~~~~~~~~~~~~~~--h------------~~~V~~v~~s~~g~~la~g~~-dg~v~  208 (458)
                      +.++.  ++++.+ ..++.|++||... ..  +..+.+  .            -.....|++.++++.|+++.. ++.|+
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCC-CE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45543  333333 4567899999764 43  222221  1            123578999998887766654 56799


Q ss_pred             EEeCCCceeeEEecCC-C---------------cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcc----
Q 012679          209 LWDSTANRQLRTLRGG-H---------------RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRG----  265 (458)
Q Consensus       209 iwd~~~~~~~~~~~~~-~---------------~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~----  265 (458)
                      ++|..++. +.++.+. .               -..-..++++   +.++++.+.++.|++||...+..  ..+.+    
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~  726 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYE  726 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCcc
Confidence            99987765 3333210 0               0123456774   45667777889999999876542  22211    


Q ss_pred             -----------cccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcc-------eeeeeeccc--------ccce
Q 012679          266 -----------HNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVT-------QWLHRLEEH--------TSAV  318 (458)
Q Consensus       266 -----------h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~h--------~~~v  318 (458)
                                 .-....+++++|+++.| ++-+.++.|++||+.++......       .....+..+        -...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence                       11235679999999855 55566799999998765421000       000011100        1123


Q ss_pred             eEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       319 ~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                      ..+++++++. ++++..  .++.|++||..++........+              .....++++++|+.+++  ...++.
T Consensus       807 ~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~  881 (1057)
T PLN02919        807 LGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSL  881 (1057)
T ss_pred             ceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCE
Confidence            5889999765 666655  7899999999888766443221              24678999999986665  457899


Q ss_pred             EEEEeCCCcee
Q 012679          385 LTLWKYPSMVK  395 (458)
Q Consensus       385 i~iwd~~~~~~  395 (458)
                      |++||+.+++.
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999988754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=1.9e-08  Score=92.38  Aligned_cols=165  Identities=15%  Similarity=0.230  Sum_probs=122.1

Q ss_pred             eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      ...+..+++++++|.+..+....++++.....  ..+++..... ...-.++.+..+....+++-.......+.+|....
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            34456788899999999988888888766543  1122222221 22234455555555555543323667788888777


Q ss_pred             CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679          350 GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLR  428 (458)
Q Consensus       350 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~i~  428 (458)
                      +.+...+.+-+.+..++|+||++.|++  ...|..|+|-.++....+..+ -||+.-|..++.-++ +.|++||.|++|+
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~Iit--aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIIT--ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR  218 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEE--ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence            888888888889999999999999999  458999999999887776665 479999999998865 4689999999999


Q ss_pred             EEecCCCCcccc
Q 012679          429 FWNVFGAPQVIS  440 (458)
Q Consensus       429 iW~~~~~~~~~~  440 (458)
                      +||+.++.....
T Consensus       219 ~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  219 LWDITSGKLLDT  230 (390)
T ss_pred             EEecccCCcccc
Confidence            999999887744

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=7.1e-10  Score=110.48  Aligned_cols=216  Identities=14%  Similarity=0.205  Sum_probs=156.0

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-CC-cEEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-DG-LIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg-~i~vw  251 (458)
                      ...+..|+...+|++|+-+.++|++|+..|.|++|++.+|.......+ |.+.|+-+..  +|..+++.+. .. ...+|
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHh
Confidence            445667888999999999999999999999999999999999999988 9999999988  5665554443 33 56789


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee----cccccceeEEEecCCC
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL----EEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~  327 (458)
                      ++.........+.    +-.++.|+.....-+.|+......|||+.+...      +.++    .+.+..-.+..|+|..
T Consensus      1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~------l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP------LQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             ccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH------HHHhcCcchhhhhhccccccCCCc
Confidence            9875433333332    345788887665556677667899999998765      3331    1223334678899964


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL  407 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~  407 (458)
                      . |+.     .||.  +||++..+.++.++.-..-..-.|+|+|..+++-       -.|||+++.+.++....-.  -.
T Consensus      1243 ~-LIl-----ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN-------SEIwD~RTF~lLh~VP~Ld--qc 1305 (1516)
T KOG1832|consen 1243 T-LIL-----NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN-------SEIWDMRTFKLLHSVPSLD--QC 1305 (1516)
T ss_pred             c-eEe-----eCce--eeeeccHHHHhhhhhheecccccccCCCceEEee-------chhhhhHHHHHHhcCcccc--ce
Confidence            4 444     5664  7999998888877654444455799999999983       3689999988776654322  24


Q ss_pred             EEEEcCCCCEEE
Q 012679          408 FMAQSPDGCTVA  419 (458)
Q Consensus       408 ~l~~spdg~~l~  419 (458)
                      .+.|+..|..+.
T Consensus      1306 ~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMY 1317 (1516)
T ss_pred             EEEeccCccchh
Confidence            566766666544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.91  E-value=5e-08  Score=84.66  Aligned_cols=165  Identities=13%  Similarity=0.259  Sum_probs=103.4

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-EEecCCCcccE-EEEEeCCCeEEEEe-----CCCcEE
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-RTLRGGHRSRV-GSLAWNNHILTTGG-----MDGLII  249 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v-~~l~~~~~~l~sg~-----~dg~i~  249 (458)
                      ..+..|.++-.+-+.+-.++.++++..||.+.+++.+.-..+ +.+...|.+.. .++.-.++.+.++.     .-+..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            333334433333333445678999999999999987652111 11111111111 11112344444432     224556


Q ss_pred             EEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          250 NNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       250 vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .|+++.........+.- ..|.+++-+|. .+++++|+.||.+.+||.+....+     ...+..|..++..+-|+|..+
T Consensus       163 a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-----~S~l~ahk~~i~eV~FHpk~p  236 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-----VSLLKAHKAEIWEVHFHPKNP  236 (319)
T ss_pred             eeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----HHHHHHhhhhhhheeccCCCc
Confidence            77776444322222222 33999999995 456678889999999999987442     566789999999999999877


Q ss_pred             cEEEEeCCCCCCeEEEEECCC
Q 012679          329 NLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .-|.+++  .||.+--||..+
T Consensus       237 ~~Lft~s--edGslw~wdas~  255 (319)
T KOG4714|consen  237 EHLFTCS--EDGSLWHWDAST  255 (319)
T ss_pred             hheeEec--CCCcEEEEcCCC
Confidence            7777776  999999999765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=8.1e-08  Score=88.25  Aligned_cols=258  Identities=14%  Similarity=0.173  Sum_probs=163.0

Q ss_pred             EEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCe
Q 012679          163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHI  238 (458)
Q Consensus       163 v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~  238 (458)
                      |++.+-.+-+.  ..-+..|...|..++|||..+ ++..++.+..|+|.|+++...+..+.. + ..+++++|+   .++
T Consensus       175 v~~l~~~~fks--sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKS--SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcch--hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcce
Confidence            55555444333  335667888999999999776 788899999999999999999888885 4 889999994   589


Q ss_pred             EEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEEE------cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee
Q 012679          239 LTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLKW------SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       239 l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~------spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      |..|...|.|.+||++.....+..+.+  ...+|..++.      .+.|.+|+....+  +..|++........  ++..
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p--~vle  326 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP--CVLE  326 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC--cccc
Confidence            999999999999999977654433332  2334444443      2345555555543  56677654432111  1122


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCC---eEE----EEECCCCCeeEEEeC---CCC-----eEEEEEcCCCCeEE
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDR---CIK----FWNTHTGACLNSVDT---GSQ-----VCALLWNKNERELL  375 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~---~i~----lwd~~~~~~~~~~~~---~~~-----v~~~~~s~~~~~l~  375 (458)
                      + +..+...+++.++..+.++++.-  .+.   .++    --|..+|..+.....   ++.     -....+.+..+.++
T Consensus       327 l-e~pG~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~i  403 (463)
T KOG1645|consen  327 L-EPPGICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYI  403 (463)
T ss_pred             c-CCCcceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEE
Confidence            2 33566778888887788888763  211   111    122333433322211   111     11222333333444


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCC-EEEEEeCCCcEEEEecC
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGC-TVASAAADETLRFWNVF  433 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~-~l~s~s~Dg~i~iW~~~  433 (458)
                      +..|.+.+.+.+||..+++.+.++.- ..+|..++... +|. +|+ .-.|..++||...
T Consensus       404 v~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa-~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  404 VVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLA-LLTDDRVHIYKNE  461 (463)
T ss_pred             EEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhh-heecceEEEEecC
Confidence            44477889999999999999998863 47787777654 343 555 4456688888754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.90  E-value=1.2e-06  Score=79.70  Aligned_cols=221  Identities=14%  Similarity=0.107  Sum_probs=139.0

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeE
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL  239 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l  239 (458)
                      +|.|..||..+|+..-...+........+. ..+++.++++++.++.|..||..+|+.+..+......... ....+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccccc
Confidence            689999999999873333332112222221 2335677888899999999999999998887742221111 34467777


Q ss_pred             EEEeCCCcEEEEEccCCCeeEEEEcccc---cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679          240 TTGGMDGLIINNDVRVRDHIVETYRGHN---QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS  316 (458)
Q Consensus       240 ~sg~~dg~i~vwd~~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  316 (458)
                      +.++.++.|..+|..++...........   ..........++..++.+..++.|..+|..+++.      +........
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~------~w~~~~~~~  153 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL------LWKYPVGEP  153 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE------EEEEESSTT
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE------EEEeecCCC
Confidence            7787888999999988886544222211   1112222333488889999899999999998876      333322221


Q ss_pred             c----------e-eEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          317 A----------V-KAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       317 ~----------v-~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                      .          + ..+.+.  +..++++.   .++. +.+ |+.+++.+.... ......+ ....+..+++..  .++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~--~~~~  223 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVIS--DGRVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTS--SDGR  223 (238)
T ss_dssp             -SS--EEEETTEEEEEECC--TTEEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEE--TTTE
T ss_pred             CCCcceeeecccccceEEE--CCEEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEe--CCCE
Confidence            1          1 223333  23555554   4664 555 999999775443 3333332 456777777753  7899


Q ss_pred             EEEEeCCCceeeEE
Q 012679          385 LTLWKYPSMVKMAE  398 (458)
Q Consensus       385 i~iwd~~~~~~~~~  398 (458)
                      |..||..+++.+.+
T Consensus       224 l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  224 LYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEECCCCCEEeE
Confidence            99999999987653

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.85  E-value=1.4e-06  Score=90.60  Aligned_cols=237  Identities=16%  Similarity=0.275  Sum_probs=139.2

Q ss_pred             ccceeecc--CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWG--SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~--~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+..+.+-  .+.++.+..+|.|.+-|.++......-.+   .+.|.+++|+||++.++..+..+++.+-+ .+...+..
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E  145 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE  145 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence            34555553  36688888889998889888776544444   56799999999999999999888776643 22222111


Q ss_pred             ec----CCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-----ECCCc
Q 012679          221 LR----GGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-----GNDNL  290 (458)
Q Consensus       221 ~~----~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-----~~dg~  290 (458)
                      ..    ....+....+-|.. ..-+-|+. |.....+.............+. .=+.+.|--||.++|+.     .....
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             cccccccccccccceecccccceeeecch-hhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCcee
Confidence            11    01223344455532 11222221 2221211111111111111222 23468999999999983     23379


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE----eCCC-CeEEE
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGS-QVCAL  365 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~----~~~~-~v~~~  365 (458)
                      |+|||-+ +.......      ...+--.+++|-|.|..+.+...-+.|+.|.++.-+ |-.-..+    .... .+..+
T Consensus       224 irV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             EEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchhee
Confidence            9999977 33311111      122333579999976666666555567789999743 3322222    2222 38999


Q ss_pred             EEcCCCCeEEEEecCCCCc-EEEEeCCCc
Q 012679          366 LWNKNERELLSSHGFTQNQ-LTLWKYPSM  393 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~-i~iwd~~~~  393 (458)
                      +|+.++..|++......+. |++|-..+.
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCe
Confidence            9999999998854444554 999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.82  E-value=4.1e-06  Score=76.11  Aligned_cols=216  Identities=13%  Similarity=0.079  Sum_probs=135.4

Q ss_pred             cCCeEEEEeCCCceeeEEecCCC-cccEEE-EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGH-RSRVGS-LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~-~~~v~~-l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .+|.|..||..+++.+....... .....+ ...++..+++++.++.|..||..+++.....-.  ...+.... ..++.
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDGG   77 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEETT
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eeccc
Confidence            36899999999999998886422 222232 233677888889999999999988875333222  22211111 22456


Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCcceeeeee-ccc----c-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679          281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEH----T-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN  354 (458)
Q Consensus       281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h----~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~  354 (458)
                      .++.++.++.|+.+|..+++.      +... ...    . .......+.  +..+++..   .++.|..+|..+|+.+.
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~------~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKV------LWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT---SSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCE------EEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE---TCSEEEEEETTTTEEEE
T ss_pred             ccccccceeeeEecccCCcce------eeeeccccccccccccccCceEe--cCEEEEEe---ccCcEEEEecCCCcEEE
Confidence            677777888999999888876      3331 111    1 111222222  45555544   58999999999999988


Q ss_pred             EEeCCCCe-----------EEEEEcCCCCeEEEEecCCCCc-EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          355 SVDTGSQV-----------CALLWNKNERELLSSHGFTQNQ-LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       355 ~~~~~~~v-----------~~~~~s~~~~~l~~~~g~~d~~-i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      .......-           ..-....++ .++++.  .++. +.+ |..+++.+.+..  ...+.. ....++..|+.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~  219 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS--GDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS  219 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC--CTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE
T ss_pred             EeecCCCCCCcceeeecccccceEEECC-EEEEEc--CCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe
Confidence            88653311           122222344 555543  4554 555 999999775443  222332 1345777888888


Q ss_pred             CCCcEEEEecCCCCccc
Q 012679          423 ADETLRFWNVFGAPQVI  439 (458)
Q Consensus       423 ~Dg~i~iW~~~~~~~~~  439 (458)
                      .++.|..||+.+++...
T Consensus       220 ~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  220 SDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCCCEEe
Confidence            99999999999887654

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.78  E-value=7.3e-08  Score=94.75  Aligned_cols=198  Identities=20%  Similarity=0.301  Sum_probs=139.8

Q ss_pred             CCCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCC--CEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679          235 NNHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASG--QQLASGGNDNLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       235 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                      .|.-++.+++-|. .+.|+.........+. ...-.|....|+|..  .+-++......-.+|++........   ...+
T Consensus        35 ~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI---ef~l  110 (1081)
T KOG0309|consen   35 SGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI---EFVL  110 (1081)
T ss_pred             ccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce---EEEE
Confidence            4666777777764 4556554433222221 123357778888743  3444444555667899876655322   4456


Q ss_pred             cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      .+|..+|+.+.|+|..+.++++++  .|..+..||+++.. ++.... -......+.|+.....+++..  ..+.|.+||
T Consensus       111 hghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass--hg~~i~vwd  186 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS--HGNDIFVWD  186 (1081)
T ss_pred             ecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc--cCCceEEEe
Confidence            789999999999999999999998  99999999999854 444443 355677888987665555522  457899999


Q ss_pred             CCCc-eeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          390 YPSM-VKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       390 ~~~~-~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      .+.+ .++..+++|...|..++|.. .-..+.+.+.||+|++||........+
T Consensus       187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~  239 (1081)
T KOG0309|consen  187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK  239 (1081)
T ss_pred             ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence            9864 67889999999999999976 234578899999999999876654443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=2.8e-08  Score=62.23  Aligned_cols=39  Identities=36%  Similarity=0.572  Sum_probs=36.9

Q ss_pred             ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.77  E-value=3.2e-05  Score=70.74  Aligned_cols=218  Identities=13%  Similarity=0.189  Sum_probs=137.9

Q ss_pred             eeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEc-CCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          147 LDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWA-PDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       147 ~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s-~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      ..|.+  +.++.+. ..+.|+.|+..+++.. ...+.+    ...+++. ++| .|+++...+ +.++|..+++......
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~----~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG----PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS----EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC----CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence            45654  5566665 4789999999887642 233322    6777777 565 555565554 5666998886544333


Q ss_pred             C---C-CcccEEEEEeC--CCeEEEEeCC--------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEEC
Q 012679          223 G---G-HRSRVGSLAWN--NHILTTGGMD--------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGN  287 (458)
Q Consensus       223 ~---~-~~~~v~~l~~~--~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~  287 (458)
                      .   . .....+.++++  |++.++....        |.|..++.. +.  +......-...++|+|+|+++.|+ +-+.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence            2   1 44677888884  6666655433        457777766 22  233333345678999999999775 5567


Q ss_pred             CCcEEEEeCCCCCC-CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEE
Q 012679          288 DNLLHIWDRSMASS-NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCAL  365 (458)
Q Consensus       288 dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~  365 (458)
                      .+.|..+++..... .........+....+..-.+++..++. +.++..  ..+.|.++|.. |+.+..+... ..++++
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC  230 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence            88899999865433 111111222333333477899999765 444433  57899999987 9999888776 789999


Q ss_pred             EE-cCCCCeEEEEe
Q 012679          366 LW-NKNERELLSSH  378 (458)
Q Consensus       366 ~~-s~~~~~l~~~~  378 (458)
                      +| -++.+.|++++
T Consensus       231 ~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  231 AFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEESTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEe
Confidence            99 46777777764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.76  E-value=2.9e-07  Score=92.77  Aligned_cols=181  Identities=20%  Similarity=0.290  Sum_probs=140.7

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL  273 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l  273 (458)
                      ++..++.|+-...+..+|+.+.+..+.... ....|.-+..++..+.+|...|+|.+-|.++.+. +.++..|++.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEecCcEEEeecccceEEeecCCcCce-eeeeeccccceeee
Confidence            455677787777899999999988887775 4556889999999999999999999999987664 78999999999876


Q ss_pred             EEcCCCCEEEEEEC---------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679          274 KWSASGQQLASGGN---------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF  344 (458)
Q Consensus       274 ~~spd~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l  344 (458)
                      ..  .|+.|+++|.         |.-|+|||+++.+.      +..+.-+.++ .-+.|+|.-...+++++  ..|...+
T Consensus       224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra------l~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~  292 (1118)
T KOG1275|consen  224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA------LSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQF  292 (1118)
T ss_pred             ec--cCCeEEEeecccccccccccchhhhhhhhhhhc------cCCcccccCc-hhhhhcccccceEEEEe--cccceee
Confidence            54  6899999884         55689999998876      3333333333 45778887666677666  7888999


Q ss_pred             EECCC---C-CeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          345 WNTHT---G-ACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       345 wd~~~---~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      -|..+   . .-+..+ ..++.+..+++++++..++.  |..+|.|.+|.
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa  340 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA  340 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence            88433   2 122333 34566999999999999999  77999999997

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.75  E-value=2e-07  Score=82.90  Aligned_cols=210  Identities=16%  Similarity=0.265  Sum_probs=139.6

Q ss_pred             CcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCee----EEEEcccc------------cceEeEEEcCCC--CEEEE
Q 012679          225 HRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI----VETYRGHN------------QEVCGLKWSASG--QQLAS  284 (458)
Q Consensus       225 ~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~~h~------------~~v~~l~~spd~--~~l~s  284 (458)
                      ....|+++.|+  |.+|++|...|.|.+|.-.....+    ...+++|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45678899995  789999999999999976543321    22344554            347788887654  36777


Q ss_pred             EECCCcEEEEeCCCCCCCCc------------------------------------ceeeeee-cccccceeEEEecCCC
Q 012679          285 GGNDNLLHIWDRSMASSNSV------------------------------------TQWLHRL-EEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~------------------------------------~~~~~~~-~~h~~~v~~l~~~p~~  327 (458)
                      .++|.+|++|.+........                                    ..+.... ..|..-+.++.+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            88999999998765421000                                    0001111 4577788999999987


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCC-eeEEEeC--C------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce----
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGA-CLNSVDT--G------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV----  394 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~~--~------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~----  394 (458)
                      ..++.+    .|=.|.+|++.--. +...++.  +      .-|++..|+|....++.- ..+.|.|++-|++...    
T Consensus       185 et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         185 ETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             heeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccC
Confidence            666653    68899999987533 2222222  1      237888999976655543 3378999999987321    


Q ss_pred             --eeEE----------EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          395 --KMAE----------LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       395 --~~~~----------~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                        .+.+          +.+-...|..+.|+++|+++++-+. -+|+|||+.......+
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik  316 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK  316 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence              1111          1122356888999999999986544 5899999987665444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.3e-07  Score=86.47  Aligned_cols=240  Identities=13%  Similarity=0.114  Sum_probs=166.6

Q ss_pred             CCeEEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccE
Q 012679          152 SNVLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      +.++.++.||.++.|--.. .-.+-+..+..|...|.+++.+-+|..++++.. |..++++|+++-..+.-+..  ...-
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL--~~lP   98 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL--VDLP   98 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc--ccCC
Confidence            6689999999999997554 222334556678888999999999999999777 99999999987665543331  1112


Q ss_pred             EEEEe---CC----CeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-C
Q 012679          230 GSLAW---NN----HILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-S  300 (458)
Q Consensus       230 ~~l~~---~~----~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~  300 (458)
                      ..+.|   .|    .+-++.-.+|.|.++|-....+.. ..-.-|..+|..+.+++-+..+++....|.|.-|..... +
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q  178 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ  178 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence            23334   23    233344567899999987665333 334469999999999999999999999999999997731 1


Q ss_pred             CCC--------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------------
Q 012679          301 SNS--------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------------  358 (458)
Q Consensus       301 ~~~--------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------------  358 (458)
                      .+.        ....+..+........++.|+|++..+-..+   .|..|++++.++|+.++.++.              
T Consensus       179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~  255 (558)
T KOG0882|consen  179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG  255 (558)
T ss_pred             CccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence            100        0011222333456678999999876665544   899999999999987665531              


Q ss_pred             --------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          359 --------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       359 --------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                                          ...-+.++|...+++|+-.+   -=-|++.++.+.+.+..+
T Consensus       256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t---~~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT---ILGIKVINLDTNTVVRIL  313 (558)
T ss_pred             cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec---ceeEEEEEeecCeEEEEe
Confidence                                01235678888999988732   234788888877766554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.69  E-value=6.3e-07  Score=90.42  Aligned_cols=185  Identities=15%  Similarity=0.216  Sum_probs=134.7

Q ss_pred             CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679          235 NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH  314 (458)
Q Consensus       235 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  314 (458)
                      ++..++.|+....+..+|+++... .+...-..+.|.-+.  .+++++.+|...|+|.+-|.++.+.      ++++..|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~------iht~~aH  216 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE-TRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFET------IHTFDAH  216 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee-eeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCce------eeeeecc
Confidence            567888888888899999987653 233322233354444  4789999999999999999998877      8999999


Q ss_pred             ccceeEEEecCCCCcEEEEeCC-------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679          315 TSAVKAIAWCPFQSNLLATGGG-------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL  387 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i  387 (458)
                      ++.|..+...   +++|+++|-       ..|..|++||++..+.+.-+.......-+.|.|.-...++.+ +..|+..+
T Consensus       217 s~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~-S~sGq~q~  292 (1118)
T KOG1275|consen  217 SGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVT-SQSGQFQF  292 (1118)
T ss_pred             ccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEE-ecccceee
Confidence            9999887753   455555542       247789999999988877776665556677888765444332 25788888


Q ss_pred             EeCCCc----eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          388 WKYPSM----VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       388 wd~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      -|..+.    ..+..+..-...+..+++|++|+.++.|..+|.|.+|.-
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            884321    112222333455999999999999999999999999983

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.69  E-value=4e-07  Score=79.18  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-----cCCeEEEEeCCCceeeEEecCCC
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-----NNCQVQLWDSTANRQLRTLRGGH  225 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-----~dg~v~iwd~~~~~~~~~~~~~~  225 (458)
                      .+.++++..||.+.+.+.+. ......++......-.+.+....++.+.++.     .-+..++|++...+.+..-.. .
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~  178 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-A  178 (319)
T ss_pred             CCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-c
Confidence            47889999999999998765 1111111111111122233333455554432     123566776654443332222 2


Q ss_pred             cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCC
Q 012679          226 RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       226 ~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~  298 (458)
                      ...|.+++-+   .+++++|+.||.+.+||.+....++..+..|..++..+.|+| ++..|+++++||.+--||..+
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3348888876   478999999999999999988777788899999999999999 678999999999999999764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.67  E-value=2.2e-08  Score=100.16  Aligned_cols=251  Identities=14%  Similarity=0.239  Sum_probs=168.6

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCC-cee
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTA-NRQ  217 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~-~~~  217 (458)
                      .++|++++.  +.++.|...|.|++|++.+|..  ......|..+|+.+.-+.||..+++.+...  ...+|++.. +..
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence            456677765  5678888899999999999987  566778999999999999999877665433  578999754 344


Q ss_pred             eEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEEEc---ccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          218 LRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYR---GHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      .+++..     -.++.|.+  ..-+.|+......+||+++...+..-+.   +....-++..|+|+..+++   +||  .
T Consensus      1181 ~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--v 1250 (1516)
T KOG1832|consen 1181 RHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--V 1250 (1516)
T ss_pred             cccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--e
Confidence            444443     45677743  2334455556788999998875433232   2333447789999998876   455  5


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      +||.+....      ++.|...+.. ..-.|+|.+..+++-        -.|||++|.+.++.+..- .-|.+.|+..|.
T Consensus      1251 LWDvR~~~a------Ih~FD~ft~~-~~G~FHP~g~eVIIN--------SEIwD~RTF~lLh~VP~L-dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1251 LWDVRIPEA------IHRFDQFTDY-GGGGFHPSGNEVIIN--------SEIWDMRTFKLLHSVPSL-DQCAVTFNSTGD 1314 (1516)
T ss_pred             eeeeccHHH------Hhhhhhheec-ccccccCCCceEEee--------chhhhhHHHHHHhcCccc-cceEEEeccCcc
Confidence            799998765      6666554422 234699988777763        248999999888776432 246788888888


Q ss_pred             eEEEEecCCC---------------CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          373 ELLSSHGFTQ---------------NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       373 ~l~~~~g~~d---------------~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      .++++-.-.|               ...+-|+......+.++.+ ...|..++-+|...+|+.--
T Consensus      1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEEe
Confidence            7765321000               1233444455556666653 34566777788777776553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.67  E-value=1.6e-05  Score=80.15  Aligned_cols=278  Identities=13%  Similarity=0.137  Sum_probs=163.5

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC------CEE--EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG------PVT--SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~------~V~--~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+.+++++.++.|+-.|..+|+.  +.+......      .+.  .+... ++..+++++.+|.|.-+|.++++.+..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            35677777889999999999986  333322111      010  01111 22678889999999999999999998876


Q ss_pred             CCCcc----cE-EEEEeCCCeEEEEe---------CCCcEEEEEccCCCeeEEEEccccc-------------------c
Q 012679          223 GGHRS----RV-GSLAWNNHILTTGG---------MDGLIINNDVRVRDHIVETYRGHNQ-------------------E  269 (458)
Q Consensus       223 ~~~~~----~v-~~l~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~~~~h~~-------------------~  269 (458)
                      .....    .+ .+....+..++.++         .+|.+..+|..+++..-..-.....                   .
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            42110    01 12222345565654         3678899999888754332211110                   0


Q ss_pred             e-EeEEEcCCCCEEEEEECCC------------------cEEEEeCCCCCCCCcceeeeeeccccc----ceeEEEec--
Q 012679          270 V-CGLKWSASGQQLASGGNDN------------------LLHIWDRSMASSNSVTQWLHRLEEHTS----AVKAIAWC--  324 (458)
Q Consensus       270 v-~~l~~spd~~~l~sg~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~----~v~~l~~~--  324 (458)
                      | ....+.+.+..++.++.++                  .|.-+|..+++.    .+......|..    ......+.  
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~----~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV----KWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE----EEEeeCCCCCCcccccCCCCeEEec
Confidence            1 1234445566777777655                  688888888876    22222222211    00000111  


Q ss_pred             --CCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe----------------cCCCCc
Q 012679          325 --PFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH----------------GFTQNQ  384 (458)
Q Consensus       325 --p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------------g~~d~~  384 (458)
                        -++.  .+++.++  .+|.+...|.++|+.+.......  ..+..+|  ..+++..                ...+|.
T Consensus       294 ~~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~  367 (488)
T cd00216         294 KPKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG  367 (488)
T ss_pred             cccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence              1122  2455554  89999999999999988765431  1122333  2222211                113678


Q ss_pred             EEEEeCCCceeeEEEeCCC--------CcE--EEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679          385 LTLWKYPSMVKMAELSGHT--------SRV--LFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA  443 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~~h~--------~~V--~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~  443 (458)
                      +.-.|..+++.+.+.....        .+.  ..++.  .+..|+.++.||.|+.+|..+++.+.+...
T Consensus       368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            8889999998877765331        111  11222  456888899999999999999998877554

The alignment model contains an 8-bladed beta-propeller.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=9e-08  Score=86.28  Aligned_cols=142  Identities=22%  Similarity=0.268  Sum_probs=113.3

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-----eeeEEecCCCccc
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-----RQLRTLRGGHRSR  228 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-----~~~~~~~~~~~~~  228 (458)
                      -+++|.+..|-+-|+++|-.   ..+. ..+.|.++.|...++++..|..+|.|..+|++..     .+...+.  |.+.
T Consensus       227 hfs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ss  300 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSS  300 (425)
T ss_pred             eecccccceeEEEEeecccc---cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcc
Confidence            37788899999999999864   2232 3667999999999999999999999999999754     3455555  8999


Q ss_pred             EEEEEe---CCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeE--EEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          229 VGSLAW---NNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGL--KWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       229 v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l--~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      |+++..   ++..|++.+.+|.|.+||.+.-++  -+..+.||...-.-+  ...+....++++|.|...+||.+..+..
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            998764   789999999999999999986543  367788886544333  3456677889999999999999998765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.66  E-value=1.5e-05  Score=79.58  Aligned_cols=275  Identities=13%  Similarity=0.058  Sum_probs=164.5

Q ss_pred             ceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEec----------------------CC-----
Q 012679          130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVD----------------------DE-----  182 (458)
Q Consensus       130 ~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~----------------------~h-----  182 (458)
                      .++.-+|+-.++||.         +.++|..|.|+|+-+.+++.  +..+.                      ++     
T Consensus        54 ~~~~v~pg~~deyy~---------f~SgG~sG~~~v~G~PSmr~--l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~  122 (635)
T PRK02888         54 GKYEVAPGELDEYYG---------FWSGGHSGEVRILGLPSMRE--LMRIPVFNRDSATGWGITNESKKVLGEGARGGKY  122 (635)
T ss_pred             CcccCCCCCcccEEE---------EeeCCccceEEEEecCCcce--EEEeeeecCCCCcccCCchhHHHHhhccccCCcc
Confidence            455667788888874         45667778888887776554  11111                      00     


Q ss_pred             -CCCEEEEEEc-----CCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEe-------C
Q 012679          183 -NGPVTSVNWA-----PDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGG-------M  244 (458)
Q Consensus       183 -~~~V~~v~~s-----~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~-------~  244 (458)
                       .+......+|     .||+||.+-.. ++.|...++...++-+.+.......+..+.+    +..++++++       .
T Consensus       123 ~~gD~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn  202 (635)
T PRK02888        123 LNGDTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN  202 (635)
T ss_pred             cCCCcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC
Confidence             0011111222     26778877654 5566666766665544444323344444443    123333332       2


Q ss_pred             C-----------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeee
Q 012679          245 D-----------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       245 d-----------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~  309 (458)
                      |           +.+.+.|..+.+...+...+  +....+.++|+|+++++.+.+    +++..-+......      +.
T Consensus       203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~------~v  274 (635)
T PRK02888        203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW------VV  274 (635)
T ss_pred             CCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCce------EE
Confidence            3           34555565544322222221  233567889999999887632    2233322211110      11


Q ss_pred             eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-----CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-----GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                      .+...  .+  -++.++++..++     .++.|.+.|..+     .+.+..+..+.....+.++|||++++++ |..+++
T Consensus       275 vfni~--~i--ea~vkdGK~~~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~t  344 (635)
T PRK02888        275 VFNIA--RI--EEAVKAGKFKTI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSPT  344 (635)
T ss_pred             EEchH--HH--HHhhhCCCEEEE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCCc
Confidence            11110  00  133446665554     357899999998     5678888999999999999999999998 557899


Q ss_pred             EEEEeCCCcee------------eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          385 LTLWKYPSMVK------------MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       385 i~iwd~~~~~~------------~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +.|+|+.+.+.            +.+.+- .......+|.++|....|--.|..|..|++..
T Consensus       345 VSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        345 VTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            99999988653            444433 23345789999999888888999999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.63  E-value=8.8e-05  Score=67.94  Aligned_cols=219  Identities=16%  Similarity=0.161  Sum_probs=136.7

Q ss_pred             CCeEEEEc--CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-----cCCeEEEEeCC-CceeeEEecC
Q 012679          152 SNVLAIAL--GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-----NNCQVQLWDST-ANRQLRTLRG  223 (458)
Q Consensus       152 ~~~la~~~--d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-----~dg~v~iwd~~-~~~~~~~~~~  223 (458)
                      ...++.+.  +....+||..+++......-....----.-.||+||++|++.-     ..|.|-|||.. +-+.+.++..
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s   96 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS   96 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence            34445544  4578999999998744333221111122467999999999863     45789999998 6677777776


Q ss_pred             CCcccEEEEEe--CCCeEEEEe------------------CCCcEEEEEccCCCeeEE-EE--cccccceEeEEEcCCCC
Q 012679          224 GHRSRVGSLAW--NNHILTTGG------------------MDGLIINNDVRVRDHIVE-TY--RGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       224 ~~~~~v~~l~~--~~~~l~sg~------------------~dg~i~vwd~~~~~~~~~-~~--~~h~~~v~~l~~spd~~  280 (458)
                       |.-.-..+.+  ++..|+++.                  .+-.+...|..++..+-+ .+  ..|...|..+++.++|.
T Consensus        97 -~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen   97 -HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             -CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence             5555555556  455565552                  223455555565553222 23  34777899999999987


Q ss_pred             EEEEEECCCc-------EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          281 QLASGGNDNL-------LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       281 ~l~sg~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      .++..-..|.       |-+++....-. ....+......-...+-+|++++++..+++|+-  .-+.+.+||..+++.+
T Consensus       176 V~~a~Q~qg~~~~~~PLva~~~~g~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  176 VAFAMQYQGDPGDAPPLVALHRRGGALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVWDAATGRLL  252 (305)
T ss_pred             EEEEEecCCCCCccCCeEEEEcCCCcce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEEECCCCCEe
Confidence            6665544332       33444322110 000000111233467889999998888888876  8899999999999988


Q ss_pred             EEEeCCCCeEEEEEcCCCCeEEE
Q 012679          354 NSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       354 ~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                      ..... ..+|.++-.+++ ++++
T Consensus       253 ~~~~l-~D~cGva~~~~~-f~~s  273 (305)
T PF07433_consen  253 GSVPL-PDACGVAPTDDG-FLVS  273 (305)
T ss_pred             ecccc-CceeeeeecCCc-eEEe
Confidence            76543 457778777777 4443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.62  E-value=0.00017  Score=77.51  Aligned_cols=287  Identities=18%  Similarity=0.211  Sum_probs=174.2

Q ss_pred             eeeeCCCCCCccccceeeccC-CCeEEEEcC----CEEEEEECCCCCeeeEEEec--CCCCCEEEEEEcCCCCEEEEEec
Q 012679          131 RTLDAPDLVDDYYLNLLDWGS-SNVLAIALG----STVYLWDASDGTTSELVTVD--DENGPVTSVNWAPDGRHIAIGLN  203 (458)
Q Consensus       131 ~~l~~~~~~~d~~~~~~~~~~-~~~la~~~d----~~v~iwd~~~~~~~~~~~~~--~h~~~V~~v~~s~~g~~la~g~~  203 (458)
                      ..|+.-.-.-+.--..++|.| ++++|+...    ..|.+|.- +|-...-+.+.  .....|..++|++|+..||+...
T Consensus       246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~  324 (928)
T PF04762_consen  246 GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE  324 (928)
T ss_pred             ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence            344443334555567899988 678887764    56777763 34333334443  34678999999999999999887


Q ss_pred             CCeEEEEeCCCce--eeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679          204 NCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS  278 (458)
Q Consensus       204 dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  278 (458)
                      |. |++|-..+-.  ..+.+.......+..+.|+   +..|...+.+|.+..+++.-     ....+..       .+|+
T Consensus       325 ~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-----~v~~s~~-------~~~~  391 (928)
T PF04762_consen  325 DR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-----DVSRSPG-------SSPN  391 (928)
T ss_pred             CC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE-----EEEecCC-------CCcc
Confidence            74 9999887765  2233332234455669996   46788888878887776531     1111100       1122


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-----
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-----  353 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-----  353 (458)
                      +.-.+..=....+.+-.++....+.+.- ...+. -...|.+++|++.+..+++..   .||.|.+|........     
T Consensus       392 D~g~vaVIDG~~lllTpf~~a~VPPPMs-~~~l~-~~~~v~~vaf~~~~~~~avl~---~d~~l~~~~~~~~~~~~~~~~  466 (928)
T PF04762_consen  392 DNGTVAVIDGNKLLLTPFRRAVVPPPMS-SYELE-LPSPVNDVAFSPSNSRFAVLT---SDGSLSIYEWDLKNMWSVKPP  466 (928)
T ss_pred             CceEEEEEeCCeEEEecccccCCCchHh-ceEEc-CCCCcEEEEEeCCCCeEEEEE---CCCCEEEEEecCCCcccccCc
Confidence            2222222233467777776655543321 23332 357899999999766554443   7999999885432211     


Q ss_pred             ---EEEe-----------CCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCce---eeEEEeCCCCcEEEEEEcCCC
Q 012679          354 ---NSVD-----------TGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMV---KMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       354 ---~~~~-----------~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg  415 (458)
                         ..+.           ....+..++|..+...++..... ....+.++++...+   .+.....-.+.+..+...++.
T Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (928)
T PF04762_consen  467 KLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS  546 (928)
T ss_pred             chhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC
Confidence               1111           23457889998888777776543 45788888874332   333333344566666666666


Q ss_pred             CEEEEEeCCCcEEEEecCCCC
Q 012679          416 CTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       416 ~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ..++.-..||.+...+.....
T Consensus       547 ~~~~~q~~~G~v~~~~~~~~~  567 (928)
T PF04762_consen  547 GSLYIQTNDGKVFQLSSDGEL  567 (928)
T ss_pred             cEEEEEECCCEEEEeecCCCc
Confidence            556667789988866555443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.61  E-value=0.00012  Score=67.17  Aligned_cols=236  Identities=14%  Similarity=0.155  Sum_probs=153.0

Q ss_pred             EEEEEEcC-CCCEEEEEecCCe-EEEEeCCCceeeEEecCCCccc----EEEEEeCCCeEEEEe-----CCCcEEEEEcc
Q 012679          186 VTSVNWAP-DGRHIAIGLNNCQ-VQLWDSTANRQLRTLRGGHRSR----VGSLAWNNHILTTGG-----MDGLIINNDVR  254 (458)
Q Consensus       186 V~~v~~s~-~g~~la~g~~dg~-v~iwd~~~~~~~~~~~~~~~~~----v~~l~~~~~~l~sg~-----~dg~i~vwd~~  254 (458)
                      ...++.+| .+..++.+-.-|. ..+||..+++....+.. ...+    -.+++-+|.+|++.-     ..|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            45678888 6667777877774 78899999998887764 2222    223334688888864     35899999999


Q ss_pred             CCCeeEEEEcccccceEeEEEcCCCCEEEEEEC------------------CCcEEEEeCCCCCCCCcceeeeee--ccc
Q 012679          255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGN------------------DNLLHIWDRSMASSNSVTQWLHRL--EEH  314 (458)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~------------------dg~i~iwd~~~~~~~~~~~~~~~~--~~h  314 (458)
                      ..-..+..+..|.-.-..+.+.|||+.|+++-.                  +-.+.+.|..++....    ...+  ..|
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~----q~~Lp~~~~  161 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE----QVELPPDLH  161 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee----eeecCcccc
Confidence            555557777777777788899999988887631                  1233444444444310    1224  347


Q ss_pred             ccceeEEEecCCCCcEEEEeC-CC-CC--CeEEEEECCCCCeeEEEe--------CCCCeEEEEEcCCCCeEEEEecCCC
Q 012679          315 TSAVKAIAWCPFQSNLLATGG-GG-GD--RCIKFWNTHTGACLNSVD--------TGSQVCALLWNKNERELLSSHGFTQ  382 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~-g~-~d--~~i~lwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~g~~d  382 (458)
                      ...|..+++.+++.-+++.-- |. .+  --|-+++  .++.+..+.        ....+-++++++++..+++++- ..
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP-rG  238 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP-RG  238 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-CC
Confidence            788999999997554444321 00 01  1233333  333333332        2456899999999999988753 67


Q ss_pred             CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       383 ~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      |.+.+||..+++.+....-  ..+..++..+++ +++|.+. |.  ++.+...
T Consensus       239 g~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~--~~~~~~~  285 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQ--LIRLSPD  285 (305)
T ss_pred             CEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC-cc--EEEccCc
Confidence            8999999999998876542  346778887777 6665544 44  4444433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=2.6e-07  Score=83.36  Aligned_cols=151  Identities=15%  Similarity=0.194  Sum_probs=116.3

Q ss_pred             EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-----CeeEEEe
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-----ACLNSVD  357 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-----~~~~~~~  357 (458)
                      ++.|.+-.|.+-|+.++..       +.+. ..+.|.++.|... ..++..|.  ..|.|..+|++.+     .+...+-
T Consensus       228 fs~G~sqqv~L~nvetg~~-------qsf~-sksDVfAlQf~~s-~nLv~~Gc--RngeI~~iDLR~rnqG~~~~a~rly  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-------QSFQ-SKSDVFALQFAGS-DNLVFNGC--RNGEIFVIDLRCRNQGNGWCAQRLY  296 (425)
T ss_pred             ecccccceeEEEEeecccc-------cccc-cchhHHHHHhccc-CCeeEecc--cCCcEEEEEeeecccCCCcceEEEE
Confidence            5566677888999888753       2333 5678889999874 56666655  9999999999864     5788889


Q ss_pred             CCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCcee---eEEEeCCCCcEEE--EEEcCCCCEEEEEeCCCcEEEEe
Q 012679          358 TGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVK---MAELSGHTSRVLF--MAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       358 ~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~---~~~~~~h~~~V~~--l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      +++.|+++..-. ++.+|+++  ..+|.|.+||.+-.+.   +.+++||...-..  +-+.+....++++|.|...|||.
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS--~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs  374 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMAS--DMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS  374 (425)
T ss_pred             cCcchhhhhhhccccceEeec--cCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence            999999998887 77888874  4899999999987666   8899999754333  33456677899999999999999


Q ss_pred             cCCCCcccccCCCCC
Q 012679          432 VFGAPQVISKSAPKP  446 (458)
Q Consensus       432 ~~~~~~~~~~~~~~~  446 (458)
                      +..+...-+.+.+.+
T Consensus       375 l~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  375 LDSGHLLCTIPFPYS  389 (425)
T ss_pred             cccCceeeccCCCCc
Confidence            998876665544433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.60  E-value=3.8e-05  Score=69.20  Aligned_cols=204  Identities=10%  Similarity=0.110  Sum_probs=121.4

Q ss_pred             EEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          177 VTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ..+.+-...+..++|.|+.+ ++++....+.|..++. +|+.++.+........-.|++  ++.++++--+++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34556566799999999754 6677777888888886 578888887534566778888  3445555556899999988


Q ss_pred             cCCCe-----eEEEEc-----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee------ecccccc
Q 012679          254 RVRDH-----IVETYR-----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR------LEEHTSA  317 (458)
Q Consensus       254 ~~~~~-----~~~~~~-----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------~~~h~~~  317 (458)
                      .....     ....+.     .+...+-+++|.+.++.|+.+-...-..||.+.......... ...      .......
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceecc
Confidence            43321     111111     345668999999998888888877777777765411100000 011      1123345


Q ss_pred             eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----------CCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679          318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----------SQVCALLWNKNERELLSSHGFTQNQLTL  387 (458)
Q Consensus       318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~g~~d~~i~i  387 (458)
                      +.+++++|..+.+++...  .++.|..+| .+|+.+..+...          .+.-.++|.++|+..+++   +-+..++
T Consensus       173 ~S~l~~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs---EpNlfy~  246 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS---EPNLFYR  246 (248)
T ss_dssp             --EEEEETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE---TTTEEEE
T ss_pred             ccceEEcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc---CCceEEE
Confidence            789999998888888876  889999999 778887777543          368899999999777763   4555555


Q ss_pred             E
Q 012679          388 W  388 (458)
Q Consensus       388 w  388 (458)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.58  E-value=3.7e-05  Score=71.22  Aligned_cols=235  Identities=11%  Similarity=0.083  Sum_probs=148.8

Q ss_pred             CEEEEEECCCCCeeeEEEecCC-C----CCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEEecCCCcccEEEEE
Q 012679          161 STVYLWDASDGTTSELVTVDDE-N----GPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRTLRGGHRSRVGSLA  233 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h-~----~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~  233 (458)
                      ..|.+||..+-....-..++.. .    ......+++.||+++++.--  --.|.|.|+...+.+.++.  -.+...-.-
T Consensus        67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PGC~~iyP  144 (342)
T PF06433_consen   67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPGCWLIYP  144 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTSEEEEEE
T ss_pred             eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCCEEEEEe
Confidence            4799999998776555555532 1    12334678899999888643  4479999999999998887  344444444


Q ss_pred             eCCCeEEEEeCCCcEEEEEccCCCeeEEEE----cccccc-eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          234 WNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQE-VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       234 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~h~~~-v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      +.+.-+.+-|.||.+....+....+.....    .....+ +..-.+...+..++--+.+|.|+--|+.......    .
T Consensus       145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~----~  220 (342)
T PF06433_consen  145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF----G  220 (342)
T ss_dssp             EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE----E
T ss_pred             cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc----c
Confidence            456778899999999999888655433221    111112 2233444555566667888999988887665311    1


Q ss_pred             eeecc----------cccceeEEEecCCCCcEEEEeC-C----CCCC--eEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679          309 HRLEE----------HTSAVKAIAWCPFQSNLLATGG-G----GGDR--CIKFWNTHTGACLNSVDTGSQVCALLWNKNE  371 (458)
Q Consensus       309 ~~~~~----------h~~~v~~l~~~p~~~~ll~s~~-g----~~d~--~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~  371 (458)
                      .....          ..+.-.-+++++..+.|++.-. |    ..|+  .|-++|+.+++.+..+....++.++..+.+.
T Consensus       221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~  300 (342)
T PF06433_consen  221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDD  300 (342)
T ss_dssp             EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSS
T ss_pred             CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCC
Confidence            11111          1123345777765555544321 1    1122  4777899999999999988889999999998


Q ss_pred             CeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~  401 (458)
                      +-++.+....++.|.+||..+++.+.++.+
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            855543333678999999999999998864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=4.3e-06  Score=83.64  Aligned_cols=186  Identities=13%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      ..+.++..+...++.|.-.|.|++.+....-    .+...|...      ..+|.++++|+.||+|.|-.+-+.+...++
T Consensus        40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhhcceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            3466777888889999999999999976432    122223332      568999999999999999999888887777


Q ss_pred             cCCCcccEEEEEeCC-------CeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          222 RGGHRSRVGSLAWNN-------HILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~-------~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      .  ...++.++++++       ..+++|+.-| +.++.-+--+... ..+..-.++|.++.|.  |+++|-++.+| |+|
T Consensus       110 d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  110 D--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             e--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            6  566888888864       5799999999 7776533222111 1355667899999994  88999988776 899


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      ||..........++-.........-..+.|.+.  ..++.|   ...+|++..++
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIG---W~d~v~i~~I~  233 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIG---WGDSVKICSIK  233 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEe---cCCeEEEEEEe
Confidence            998877652221111111111223356788873  344444   45578888776

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=3.5e-07  Score=57.16  Aligned_cols=37  Identities=27%  Similarity=0.708  Sum_probs=35.0

Q ss_pred             eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679          175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd  211 (458)
                      .+..+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=4.1e-06  Score=84.03  Aligned_cols=110  Identities=20%  Similarity=0.369  Sum_probs=88.0

Q ss_pred             CEEEEEEcCCCCEEEEEe----cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCe
Q 012679          185 PVTSVNWAPDGRHIAIGL----NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDH  258 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~----~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~  258 (458)
                      .-+-.+|+|...++|+++    ..|.|.||- ++|++.+...  .+-.+++++|++  -.|+.|-.-|.+.+|...+.+.
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            344567999999999886    457899984 6777655554  455677899986  4677888899999999876553


Q ss_pred             eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                       ......|..+|..+.||++|..++++.+-|.|.+|.+..
T Consensus        94 -htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   94 -HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             -eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence             344567999999999999999999999999999998763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=3.4e-05  Score=77.90  Aligned_cols=211  Identities=12%  Similarity=0.177  Sum_probs=139.8

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc-EEEEEe-CC-CeEEEEeCCC-----cEEEEEccCC
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR-VGSLAW-NN-HILTTGGMDG-----LIINNDVRVR  256 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~-~~-~~l~sg~~dg-----~i~vwd~~~~  256 (458)
                      .|+|  |++.+..+|.|+.+|.|.+.+ ...+.++.+.. +... |..+.. ++ .+|++.+.|+     .+++|+++..
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa-~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQA-YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec-ccceeeehhee-cchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            4444  577888999999999998887 33344466665 5555 444444 33 5788877765     4899998654


Q ss_pred             C-----eeE---EEEc----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679          257 D-----HIV---ETYR----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC  324 (458)
Q Consensus       257 ~-----~~~---~~~~----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  324 (458)
                      +     .++   ..+.    ....++++++.+.+-+.+|+|-.+|.|..+.-.-...... + ..-......+|+.+++.
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r-~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-R-QDYSHRGKEPITGLALR  180 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-c-eeeeccCCCCceeeEEe
Confidence            1     222   1111    2356789999999999999999999999986432221110 0 12222346789999999


Q ss_pred             CCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-C
Q 012679          325 PFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-G  401 (458)
Q Consensus       325 p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~  401 (458)
                      .++..++.+.   .-..|.+|.+....+ ...++ ++..+.+..+++....++++   ....+.+|+.+...+-..+. |
T Consensus       181 ~d~~s~lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca---~~e~l~fY~sd~~~~cfaf~~g  254 (933)
T KOG2114|consen  181 SDGKSVLFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA---GSEFLYFYDSDGRGPCFAFEVG  254 (933)
T ss_pred             cCCceeEEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe---cCceEEEEcCCCcceeeeecCC
Confidence            8888733333   345799999884442 33344 45678888888877756664   36789999998777766776 6


Q ss_pred             CCCcEE
Q 012679          402 HTSRVL  407 (458)
Q Consensus       402 h~~~V~  407 (458)
                      |.....
T Consensus       255 ~kk~~~  260 (933)
T KOG2114|consen  255 EKKEML  260 (933)
T ss_pred             CeEEEE
Confidence            665443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=7.2e-06  Score=82.33  Aligned_cols=109  Identities=20%  Similarity=0.314  Sum_probs=84.7

Q ss_pred             ccccceeeccC-CCeEEEEc-----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 012679          141 DYYLNLLDWGS-SNVLAIAL-----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       141 d~~~~~~~~~~-~~~la~~~-----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~  214 (458)
                      |...+..+|+| .-+++++.     +|+|.||- ++|+...-.+.+-|   +++++|+|..-.|+.|-.-|.+.+|...+
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCC
Confidence            33445578988 45666664     68999994 66775444444444   67899999999999999999999999776


Q ss_pred             ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEcc
Q 012679          215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       215 ~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  254 (458)
                      .+. +++...|..+|..+.|  +|..++++..-|.+.+|...
T Consensus        91 ~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            654 4444459999999999  58999999999999999775

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.51  E-value=3e-05  Score=75.16  Aligned_cols=245  Identities=16%  Similarity=0.208  Sum_probs=137.0

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-------------------------EE------------------e
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-------------------------RT------------------L  221 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-------------------------~~------------------~  221 (458)
                      .|+.|.|+++..-|++|...|.|.||.....+..                         ..                  +
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5899999999889999999999999864322111                         01                  1


Q ss_pred             cCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEE-EEcc------cccceEeEEEcC-----CC---CEEEEE
Q 012679          222 RGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVE-TYRG------HNQEVCGLKWSA-----SG---QQLASG  285 (458)
Q Consensus       222 ~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~------h~~~v~~l~~sp-----d~---~~l~sg  285 (458)
                      . ...++|++++.+ =.+++.|..+|.+.|.|+|...-+.. .+..      ....|+++.|.-     |+   -.|++|
T Consensus        83 ~-~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 D-AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ----S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             e-ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1 135788888884 48999999999999999986553322 1112      234688888863     33   478899


Q ss_pred             ECCCcEEEEeCCC-CCCCCcceeeeeecccccceeEEE-ecCC--------------------CCcEEEEeCCCCCCeEE
Q 012679          286 GNDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIA-WCPF--------------------QSNLLATGGGGGDRCIK  343 (458)
Q Consensus       286 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~-~~p~--------------------~~~ll~s~~g~~d~~i~  343 (458)
                      ++.|.+.+|.+.- .......+.......+.+.|..+. ++.+                    -+.+++++   .+..++
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~ir  238 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDIR  238 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccceE
Confidence            9999999998752 222111122222234556655554 3211                    11244444   478899


Q ss_pred             EEECCCCCeeEEEeCCCCe-EEEEEc-----CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC----CcEEEEEEcC
Q 012679          344 FWNTHTGACLNSVDTGSQV-CALLWN-----KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT----SRVLFMAQSP  413 (458)
Q Consensus       344 lwd~~~~~~~~~~~~~~~v-~~~~~s-----~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~----~~V~~l~~sp  413 (458)
                      ++...+.+........... ..+.+-     ..+..|++..  .+|.|++|.++..+.+..+.-+.    ..+....+++
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            9999988877665522222 233442     2445555543  79999999999999998887543    3455678899


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCC
Q 012679          414 DGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +|..++-.+.. .+.++.+....
T Consensus       317 ~Gdi~~~~gps-E~~l~sv~~~~  338 (395)
T PF08596_consen  317 NGDIFYWTGPS-EIQLFSVWGEG  338 (395)
T ss_dssp             TS-EEEE-SSS-EEEEEEEES--
T ss_pred             CCCEEEEeCcc-cEEEEEEEccC
Confidence            99987766544 45555554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.48  E-value=0.0002  Score=66.48  Aligned_cols=269  Identities=15%  Similarity=0.153  Sum_probs=150.4

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGHRSRVG  230 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~~~~v~  230 (458)
                      +.++|+|.++++.  +-.+.  .+..-.+..+|+++.++++.          ..-.|.+||..+......+......+..
T Consensus        17 ~rv~viD~d~~k~--lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKL--LGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEE--EEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcE--EEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            4899999999887  33333  23345577899999888753          2336999999999887766532221222


Q ss_pred             --------EEEeCCCeEEEE--eCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          231 --------SLAWNNHILTTG--GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       231 --------~l~~~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                              .+.-++++++..  +-...|.|-|+..++. +..+.   -+=|.+.+-...+-|.+-|.||.+.-..+....
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv-v~ei~---~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G  168 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV-VGEID---TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADG  168 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE-EEEEE---GTSEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce-eeeec---CCCEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence                    222234444433  2234555666654432 22221   122333332223568888999999988887544


Q ss_pred             CCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee--EEEeC-----------CCCeEEEE
Q 012679          301 SNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL--NSVDT-----------GSQVCALL  366 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~--~~~~~-----------~~~v~~~~  366 (458)
                      ... ......+.....+ +..-++...+..++...   .+|.|+--|+......  ..+..           .+...-++
T Consensus       169 k~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A  244 (342)
T PF06433_consen  169 KEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA  244 (342)
T ss_dssp             SEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred             CEe-EeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence            321 1111122222222 22334444344444332   7889998888766532  22211           12234566


Q ss_pred             EcCCCCeEEEE-ecCCC-------CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCC
Q 012679          367 WNKNERELLSS-HGFTQ-------NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASA-AADETLRFWNVFGAP  436 (458)
Q Consensus       367 ~s~~~~~l~~~-~g~~d-------~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~-s~Dg~i~iW~~~~~~  436 (458)
                      +++..+.|++. +...+       ..|.++|+.+.+.+..+.. ...+.+|+.+.|.+ +|++. ..++.|.+||..+++
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            77665555443 21122       2588889999999998863 34577999998766 55544 458999999999988


Q ss_pred             cccccC
Q 012679          437 QVISKS  442 (458)
Q Consensus       437 ~~~~~~  442 (458)
                      .+.+..
T Consensus       324 ~~~~~~  329 (342)
T PF06433_consen  324 LVRSIE  329 (342)
T ss_dssp             EEEEE-
T ss_pred             EEeehh
Confidence            776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=2e-05  Score=79.04  Aligned_cols=183  Identities=20%  Similarity=0.303  Sum_probs=131.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      .+.++|++++  +++|+.|+.+|.|++++....-  .+... |...    .-.|.++++|+.||.|.|..+-+.+..  .
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~-~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~--~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFD-HSSS----ILEGEYVASCSDDGKVVIGSLFTDDEI--T  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccc-cccc----ccCCceEEEecCCCcEEEeeccCCccc--e
Confidence            3457777775  6799999999999999976443  33332 5444    446899999999999999988776642  2


Q ss_pred             EcccccceEeEEEcCC-----CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          263 YRGHNQEVCGLKWSAS-----GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      ......++.+++++|+     .+.+++||.-| +.++.-+-.....    ...+....++|.++.|..   +++|-+   
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~----~v~l~~~eG~I~~i~W~g---~lIAWa---  176 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD----SVVLSEGEGPIHSIKWRG---NLIAWA---  176 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc----ceeeecCccceEEEEecC---cEEEEe---
Confidence            2234678999999997     67899999988 7777643322211    113456678999999964   566655   


Q ss_pred             CCCeEEEEECCCCCeeEEEeCCC-------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGS-------QVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      .|--|++||+.+++.+..++...       -.+.+.|.++.+.++   | ...+|+|..++
T Consensus       177 nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI---G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  177 NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI---G-WGDSVKICSIK  233 (846)
T ss_pred             cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE---e-cCCeEEEEEEe
Confidence            56779999999999888775533       256788988777666   4 34568887776

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.44  E-value=9.4e-08  Score=92.80  Aligned_cols=199  Identities=19%  Similarity=0.291  Sum_probs=133.6

Q ss_pred             cccceeeccC--C-C-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEe----cCCeEEEEeC
Q 012679          142 YYLNLLDWGS--S-N-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGL----NNCQVQLWDS  212 (458)
Q Consensus       142 ~~~~~~~~~~--~-~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~----~dg~v~iwd~  212 (458)
                      -|+.|++|.-  + - +.+|..+|.|-+-......-..-...+++....++++|++ |.++||+|.    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3667777753  2 2 4445567888888776543322334567788999999998 778888884    3567999999


Q ss_pred             CCc--e--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEE
Q 012679          213 TAN--R--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASG  285 (458)
Q Consensus       213 ~~~--~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg  285 (458)
                      .++  .  ....+..+......+++|  +..++.+|.....+.++|++....  ....-.+..+.++...| .++++++-
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--hhhhhhhhhcccceecCCCCCceecc
Confidence            876  1  112222223445568888  567888999999999999984321  22222345677888888 78888776


Q ss_pred             ECCCcEEEEe-CCCCCCCCcceeeeeecc----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          286 GNDNLLHIWD-RSMASSNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       286 ~~dg~i~iwd-~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      . ||.|.+|| .+..+..     +..+..    ....+..++|+|....++++.. ...++|+++|+..
T Consensus       215 ~-dg~iAiwD~~rnienp-----l~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENP-----LQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDICV  276 (783)
T ss_pred             c-cCceeeccchhhhccH-----HHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEecccc
Confidence            5 89999999 3333221     222222    2235899999999888888775 2557899999863

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.40  E-value=6.3e-05  Score=74.55  Aligned_cols=277  Identities=14%  Similarity=0.165  Sum_probs=159.4

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----  216 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----  216 (458)
                      .+++|++-+...++.|+.-|.||+|+-..++.. .....+..+.+..+..+++..++|.|+..|.|.++-+....     
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            467888888888999999999999998777642 23333445667777889999999999999999999876532     


Q ss_pred             eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679          217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                      .+......|..+|++++|  ++..+++|...|.|....+....   .....+....++|-.+.+. ++.+|++...  ..
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~  191 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RC  191 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hh
Confidence            222333347899999999  57899999999999998887621   1123333456677777764 3444444332  23


Q ss_pred             EEEeCCCCCCCCcceeeeeeccccc-ceeEEEecCC----CCcEEEEeCCCCCCeEEEEECCC-CCeeEEEeC-------
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTS-AVKAIAWCPF----QSNLLATGGGGGDRCIKFWNTHT-GACLNSVDT-------  358 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~----~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~~-------  358 (458)
                      .+++.+......    +-+- ...+ .-...+|-|.    +.-.++++    ---.|+|..+- |+.+++...       
T Consensus       192 ~Lc~tE~eti~Q----IG~k-~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala~~  262 (726)
T KOG3621|consen  192 ILCQTEAETITQ----IGKK-PRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALARP  262 (726)
T ss_pred             heeecchhHHHH----hcCC-CcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhccC
Confidence            344443332100    1000 0111 1123344442    33344443    34478887653 454444321       


Q ss_pred             -------CC-----------CeEEEE----EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679          359 -------GS-----------QVCALL----WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       359 -------~~-----------~v~~~~----~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  416 (458)
                             .+           +-..+.    +.-++..+++-   .+-.|+|+|..+.+.+.-.. ....|..++.  .|+
T Consensus       263 p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~---te~Giyv~d~~~~~v~l~se-~~~DI~dVs~--~~n  336 (726)
T KOG3621|consen  263 PAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW---TEVGIYVFDSNNSQVYLWSE-GGHDILDVSH--CGN  336 (726)
T ss_pred             CCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEe---ecceEEEEEeccceEEEeec-CCCceeEEee--cCc
Confidence                   00           000000    01111222221   23337788877666554432 2334555544  455


Q ss_pred             EEEEEeCCCcEEEEecCCCCc
Q 012679          417 TVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       417 ~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      -|..--.|+.+++..+...++
T Consensus       337 eiFvL~~d~~l~~~sv~s~qr  357 (726)
T KOG3621|consen  337 EIFVLNLDRGLKVESVASRQR  357 (726)
T ss_pred             eEEEEecCCceeEEEeehhHH
Confidence            566666777777777765443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.40  E-value=0.0011  Score=65.05  Aligned_cols=120  Identities=15%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             eEEEecCCCCcEEEEeC--CCCCCe----EEEEECCCCC----eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679          319 KAIAWCPFQSNLLATGG--GGGDRC----IKFWNTHTGA----CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLW  388 (458)
Q Consensus       319 ~~l~~~p~~~~ll~s~~--g~~d~~----i~lwd~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw  388 (458)
                      .++.|+-.+++.+.+-.  -+.+|.    ..+|++...+    .+..+...+++.+++++|+...++.  |+.||.|.+|
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSiiLy  286 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSIILY  286 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeEEEE
Confidence            46667665555544431  012222    3456665443    2345567899999999999999999  6699999999


Q ss_pred             eCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      |...+...  +....-.++.++|+|+|..+++|+.-|.|.+||+.-........
T Consensus       287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLl  338 (545)
T PF11768_consen  287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLL  338 (545)
T ss_pred             EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeec
Confidence            98766333  33345667899999999999999999999999997665544443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.40  E-value=7.4e-05  Score=73.19  Aligned_cols=206  Identities=15%  Similarity=0.202  Sum_probs=129.5

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe---cC-CeEEEEeCCCceeeEEecCCCcccEEEEEeCC
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL---NN-CQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN  236 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~---~d-g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~  236 (458)
                      ..+.+=|.+ |..  ...+......+..-+|+|++..++.-.   .. ..+.++|+.+++....+...........+.+|
T Consensus       173 ~~l~~~D~d-g~~--~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYN--QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-Ccc--eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCC
Confidence            355565655 443  233333456688889999998766542   23 46999999998876666532334444445566


Q ss_pred             C-eEEEEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEEEeCCCCCCCCcceeeee
Q 012679          237 H-ILTTGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       237 ~-~l~sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      + ++++...||.  |+++|+..+.  ...+....+.-+.-.|+|||+.++-.+. .|  .|.++|.+....       ..
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-------~r  320 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-------TR  320 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-------eE
Confidence            4 5556667775  5566776555  2334433344447789999999977664 44  355666655443       22


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCe--EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRC--IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~--i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      +......-..-.|+|++..++....  .+|.  |.+.|+.++...+.+........-.|.++++.++..++.
T Consensus       321 iT~~~~~~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         321 LTFSGGGNSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eeccCCCCcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            2222222227789999998888763  3444  777777777666666666666677889999988886653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.38  E-value=3.1e-07  Score=89.31  Aligned_cols=240  Identities=17%  Similarity=0.171  Sum_probs=158.1

Q ss_pred             CCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCCceee-EEecCCCcccEEEEEeC---CCeEEEEe----CCCcEEEEE
Q 012679          183 NGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQL-RTLRGGHRSRVGSLAWN---NHILTTGG----MDGLIINND  252 (458)
Q Consensus       183 ~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~v~~l~~~---~~~l~sg~----~dg~i~vwd  252 (458)
                      ...+.|+++.-+  ...+++|..+|.|.+-.+....-- ..+..++...+++++|+   .+.|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            445778887653  458899999999999887654433 44444588899999996   36777773    466899999


Q ss_pred             ccCCCe-eE--EEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          253 VRVRDH-IV--ETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       253 ~~~~~~-~~--~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      +.+.-. +.  ..+. +......+++|-.+.+++.+|.....+.++|++....       ....-.+..|..+...|+..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-------~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-------SVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-------hhhhhhhhhcccceecCCCC
Confidence            987621 00  1111 2334455888988999999999999999999985432       11112344677888999888


Q ss_pred             cEEEEeCCCCCCeEEEEEC-CCC-CeeEEEeC-----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--------
Q 012679          329 NLLATGGGGGDRCIKFWNT-HTG-ACLNSVDT-----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM--------  393 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~-~~~-~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~--------  393 (458)
                      ..+++.   .|+.|.+||. ++- .++..+..     ..++..++|+|...-++++.....++|+++|+..-        
T Consensus       209 nY~cs~---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn  285 (783)
T KOG1008|consen  209 NYFCSN---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN  285 (783)
T ss_pred             Cceecc---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc
Confidence            888865   6999999993 332 22322222     24699999999887777766667889999987421        


Q ss_pred             eeeEE------EeCCC---CcEEEEEEcCCC--CEEEEEeCCCcEEEEecC
Q 012679          394 VKMAE------LSGHT---SRVLFMAQSPDG--CTVASAAADETLRFWNVF  433 (458)
Q Consensus       394 ~~~~~------~~~h~---~~V~~l~~spdg--~~l~s~s~Dg~i~iW~~~  433 (458)
                      .....      ++ |.   +.|.+..|++..  ...+++....++.-+++.
T Consensus       286 ~~~~~~~s~~~~q-~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~  335 (783)
T KOG1008|consen  286 SVFVNYESKYPVQ-PNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH  335 (783)
T ss_pred             cceeeeccccccc-ccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence            01111      12 22   457777777643  334445555555555554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=8.5e-05  Score=68.85  Aligned_cols=251  Identities=14%  Similarity=0.142  Sum_probs=138.4

Q ss_pred             CCCCCCceeeeCCCCCC-------ccccceeeccC-C--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC
Q 012679          124 HIPQSSERTLDAPDLVD-------DYYLNLLDWGS-S--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP  193 (458)
Q Consensus       124 ~i~~~~~~~l~~~~~~~-------d~~~~~~~~~~-~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~  193 (458)
                      .+|+---++|+.+++..       ...+..+++++ +  -+..++.++.|.|.|+++...  ...+..+ ..+++++|.-
T Consensus       169 ~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~--vssy~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  169 LLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV--VSSYIAY-NQIWSCCWDL  245 (463)
T ss_pred             cCCccceEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee--eeheecc-CCceeeeecc
Confidence            44444455555544432       22466678877 2  367788899999999998876  4444444 7899999987


Q ss_pred             C-CCEEEEEecCCeEEEEeCCCcee-eEEecC-CCcccEEEEEe--------CCCeEEEEeCCCcEEEEEccCCCe-eEE
Q 012679          194 D-GRHIAIGLNNCQVQLWDSTANRQ-LRTLRG-GHRSRVGSLAW--------NNHILTTGGMDGLIINNDVRVRDH-IVE  261 (458)
Q Consensus       194 ~-g~~la~g~~dg~v~iwd~~~~~~-~~~~~~-~~~~~v~~l~~--------~~~~l~sg~~dg~i~vwd~~~~~~-~~~  261 (458)
                      | .++|..|..+|.|.|||+...+- +..+.. -...+|..++.        .+.+|+....+  +..|++..... ...
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~  323 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC  323 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc
Confidence            5 46788888999999999976542 222221 13345555544        13444444332  44555543221 111


Q ss_pred             EEc-ccccceEeEEEcCCCCEEEEEECCC-----------------cEEEEeCCCCCCCCcceeeeeecccccceeEEEe
Q 012679          262 TYR-GHNQEVCGLKWSASGQQLASGGNDN-----------------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW  323 (458)
Q Consensus       262 ~~~-~h~~~v~~l~~spd~~~l~sg~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  323 (458)
                      .+. +..+...++.+++-.+.++..-..+                 --.||-.+..-....   ..+  -+..  .++.-
T Consensus       324 vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~---~~k--l~t~--~ai~~  396 (463)
T KOG1645|consen  324 VLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSK---QTK--LSTT--QAIRA  396 (463)
T ss_pred             ccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCc---ccc--cccc--cceec
Confidence            111 2234445555555444443332210                 011222111100000   000  0111  12222


Q ss_pred             cCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC-CC-CeEEEEecCCCCcEEEEeCC
Q 012679          324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK-NE-RELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       324 ~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~g~~d~~i~iwd~~  391 (458)
                      .++...++..++  .-+.+.+||..+++.++++....+|..++... ++ .+|++-   .|..++||..+
T Consensus       397 ~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L---Td~~v~Iyk~e  461 (463)
T KOG1645|consen  397 VEDNNYIVVVGD--STNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL---TDDRVHIYKNE  461 (463)
T ss_pred             cccccEEEEecC--CcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe---ecceEEEEecC
Confidence            344444444443  77899999999999999999998888887654 33 344443   47788888754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.37  E-value=0.00022  Score=68.90  Aligned_cols=253  Identities=16%  Similarity=0.229  Sum_probs=139.5

Q ss_pred             cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCC-------------
Q 012679          159 LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH-------------  225 (458)
Q Consensus       159 ~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~-------------  225 (458)
                      ..+.++|||+++++..++...   ...+....|||+|+.+|... ++.|.+++..++...+.-..+.             
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred             cceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence            347899999999886444332   56788999999999999885 5689999987775443322210             


Q ss_pred             ---cccEEEEEe--CCCeEEEEeCC-C-----------------------------------cEEEEEccCCCee-EEEE
Q 012679          226 ---RSRVGSLAW--NNHILTTGGMD-G-----------------------------------LIINNDVRVRDHI-VETY  263 (458)
Q Consensus       226 ---~~~v~~l~~--~~~~l~sg~~d-g-----------------------------------~i~vwd~~~~~~~-~~~~  263 (458)
                         -..-..+-|  +++.|+....| .                                   .+.++|+.++... +...
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~  176 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP  176 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence               011233445  34444443221 1                                   2334555444321 1111


Q ss_pred             ---cccccceEeEEEcCCCCEEEEE--ECCC---cEEEEeCCCCCCCCcceeeeeecccccc---eeEEEec-CCCCcEE
Q 012679          264 ---RGHNQEVCGLKWSASGQQLASG--GNDN---LLHIWDRSMASSNSVTQWLHRLEEHTSA---VKAIAWC-PFQSNLL  331 (458)
Q Consensus       264 ---~~h~~~v~~l~~spd~~~l~sg--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~-p~~~~ll  331 (458)
                         ..-...+..+.|.++++.|+..  ..+.   .+.+.|..++....    +.. ....+.   -....|. +++..++
T Consensus       177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~----~~~-e~~~~Wv~~~~~~~~~~~~~~~~l  251 (353)
T PF00930_consen  177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV----VLE-ETSDGWVDVYDPPHFLGPDGNEFL  251 (353)
T ss_dssp             HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE----EEE-EESSSSSSSSSEEEE-TTTSSEEE
T ss_pred             cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE----EEE-ecCCcceeeecccccccCCCCEEE
Confidence               1234567889999998844333  3332   46667776654411    111 111222   2345554 6666666


Q ss_pred             EEeCCCCCC--eEEEEECCCCCeeEEEeCCCCeEE-EEEcCCCCeEEEEecC-C--CCcEEEEeCCCceeeEEEeCCCCc
Q 012679          332 ATGGGGGDR--CIKFWNTHTGACLNSVDTGSQVCA-LLWNKNERELLSSHGF-T--QNQLTLWKYPSMVKMAELSGHTSR  405 (458)
Q Consensus       332 ~s~~g~~d~--~i~lwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~g~-~--d~~i~iwd~~~~~~~~~~~~h~~~  405 (458)
                      ....  .||  .|.+++...+.........-.|.. +.|+++++.++..+.. .  ...|..-++..+..+..+......
T Consensus       252 ~~s~--~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~  329 (353)
T PF00930_consen  252 WISE--RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD  329 (353)
T ss_dssp             EEEE--TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred             EEEE--cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence            6654  555  466667666664433334455644 7788888877655332 1  234555566623444556544433


Q ss_pred             EEEEEEcCCCCEEEEEe
Q 012679          406 VLFMAQSPDGCTVASAA  422 (458)
Q Consensus       406 V~~l~~spdg~~l~s~s  422 (458)
                      -..+.|||+|++++-..
T Consensus       330 ~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  330 HYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TEEEEE-TTSSEEEEEE
T ss_pred             ceEEEECCCCCEEEEEE
Confidence            36899999999887544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.36  E-value=0.00082  Score=67.88  Aligned_cols=237  Identities=12%  Similarity=0.129  Sum_probs=138.4

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEe---------cCCeEEEEeCCCceeeEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGL---------NNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~---------~dg~v~iwd~~~~~~~~~  220 (458)
                      +.+++++.++.|+-+|.++|+..-......+...-..+.-+|  .+..+++++         .+|.|..+|..+++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            678888889999999999998733333322210001122222  234566664         367899999999998887


Q ss_pred             ecCCCcc-------------------cE-EEEEe--CCCeEEEEeCCC------------------cEEEEEccCCCeeE
Q 012679          221 LRGGHRS-------------------RV-GSLAW--NNHILTTGGMDG------------------LIINNDVRVRDHIV  260 (458)
Q Consensus       221 ~~~~~~~-------------------~v-~~l~~--~~~~l~sg~~dg------------------~i~vwd~~~~~~~~  260 (458)
                      +......                   .+ ...+.  .+..++.++.++                  .|.-.|..+++..-
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            7642110                   01 01222  246777777665                  68889998887643


Q ss_pred             EEEcc-ccc---ce-EeEEEc----CCCC---EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          261 ETYRG-HNQ---EV-CGLKWS----ASGQ---QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       261 ~~~~~-h~~---~v-~~l~~s----pd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      ..-.. |..   .. ....+.    -++.   .++.++.+|.+...|..+++.      +-.....   ...++..|  .
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~------~W~~~~~---~~~~~~~~--~  339 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL------ISARPEV---EQPMAYDP--G  339 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE------eeEeEee---ccccccCC--c
Confidence            32212 211   00 000111    1333   577888899999999999876      2222110   11233344  2


Q ss_pred             cEEEEeC---------------CCCCCeEEEEECCCCCeeEEEeCC---------CCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          329 NLLATGG---------------GGGDRCIKFWNTHTGACLNSVDTG---------SQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       329 ~ll~s~~---------------g~~d~~i~lwd~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                      .+++...               ...++.+.-.|..+|+.+......         .....-...-.+..+++  |..+|.
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~  417 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGY  417 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCe
Confidence            2322110               124678999999999988887654         11111111124456666  558999


Q ss_pred             EEEEeCCCceeeEEEeC
Q 012679          385 LTLWKYPSMVKMAELSG  401 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~~  401 (458)
                      |+.+|..+++.+.+++-
T Consensus       418 l~ald~~tG~~lW~~~~  434 (488)
T cd00216         418 FRAFDATTGKELWKFRT  434 (488)
T ss_pred             EEEEECCCCceeeEEEC
Confidence            99999999999988764

The alignment model contains an 8-bladed beta-propeller.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=3.7e-06  Score=78.67  Aligned_cols=208  Identities=15%  Similarity=0.099  Sum_probs=146.6

Q ss_pred             CcccEEEEEeC-CCeEEEEeCCCcEEEEEccC--CCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 012679          225 HRSRVGSLAWN-NHILTTGGMDGLIINNDVRV--RDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMAS  300 (458)
Q Consensus       225 ~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~  300 (458)
                      |...|+.+... .+++.+++.||.++.|--..  +-..+..+..|...|.+++.+.++.++.+++. |..++++|+.+..
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            77777777664 68999999999999997643  22345566789999999999999999999888 9999999988765


Q ss_pred             CCCcceeeeeecccccceeEEEecCC-CCcEEEEeCCCCCCeEEEEECCCCCeeEEE---eCCCCeEEEEEcCCCCeEEE
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSV---DTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~  376 (458)
                      ...    ...+..-.+.+.. ..++. --.+++.+ -..++.|.++|-....+...+   -+.++|..+.+++.+..+++
T Consensus        88 min----miKL~~lPg~a~w-v~skGd~~s~IAVs-~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   88 MIN----MIKLVDLPGFAEW-VTSKGDKISLIAVS-LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             hhh----hcccccCCCceEE-ecCCCCeeeeEEee-cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            421    1122222222221 12221 11233333 237889999998765533222   34678999999999999988


Q ss_pred             EecCCCCcEEEEeCCC------ceeeEE---------EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          377 SHGFTQNQLTLWKYPS------MVKMAE---------LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~------~~~~~~---------~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                        +...|.|.-|..+.      .+....         +........++.|+|+|..+.+-+.|..|+++++.+++.+..
T Consensus       162 --iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  162 --IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             --ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence              55788999998862      111111         222345678999999999999999999999999998875543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.32  E-value=0.00024  Score=71.21  Aligned_cols=216  Identities=11%  Similarity=0.060  Sum_probs=128.0

Q ss_pred             EcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC----cEEEEEccCCCeeEEEEcc
Q 012679          191 WAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG----LIINNDVRVRDHIVETYRG  265 (458)
Q Consensus       191 ~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~  265 (458)
                      +.|||+.+... -..+.+.+.|.++.+...++..+.......+..++.++++.+.+.    ++..-+...... ...+.-
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEch
Confidence            34455544322 234567777888877777766433333444444677777765322    222222221111 111110


Q ss_pred             cccceEeEEEcCCCCEEEEEECCCcEEEEeCCC----CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679          266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM----ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC  341 (458)
Q Consensus       266 h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~  341 (458)
                        ..+  -++.++|++...  .++.|.+.|..+    ...      +..+-.-......++++||+.++++++.  .+.+
T Consensus       279 --~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~------v~~yIPVGKsPHGV~vSPDGkylyVank--lS~t  344 (635)
T PRK02888        279 --ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA------LTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPT  344 (635)
T ss_pred             --HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcc------eEEEEECCCCccceEECCCCCEEEEeCC--CCCc
Confidence              000  133457887766  367899999887    221      2222223455678999999999999876  8999


Q ss_pred             EEEEECCCCC------------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC----------ceeeEEE
Q 012679          342 IKFWNTHTGA------------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----------MVKMAEL  399 (458)
Q Consensus       342 i~lwd~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----------~~~~~~~  399 (458)
                      +.+.|+.+.+            .+..+..+-.....+|.++|....+  -+-|.+|..|++..          ...+..+
T Consensus       345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~  422 (635)
T PRK02888        345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEAAIRAYKGEKVDPIVQKL  422 (635)
T ss_pred             EEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHHHHHHhccccCCcceecc
Confidence            9999998865            3555555666778889999875554  45799999999875          2334444


Q ss_pred             eCCCCcEE-----EEEEcCCCCEEEEEeC
Q 012679          400 SGHTSRVL-----FMAQSPDGCTVASAAA  423 (458)
Q Consensus       400 ~~h~~~V~-----~l~~spdg~~l~s~s~  423 (458)
                      .-|-.+-.     .=.-.|||++|++...
T Consensus       423 dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        423 DVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             cCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            43433221     1123578888887643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.32  E-value=0.0019  Score=56.88  Aligned_cols=140  Identities=9%  Similarity=0.045  Sum_probs=89.7

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE-E
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV-G  230 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v-~  230 (458)
                      ..++.++-.+.+.--|..+|+..-...+   ...|.+-+.- -|++++.|...|.+++.+.++|.+...+.....-.+ .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            4566677778888889888886322222   2233333222 477899999999999999999988877763222222 2


Q ss_pred             EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       231 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      .+++++.++..|+.|++.+..|.++...+ ...+...+...+-+..|-...|..+...|.|.--..
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cV-ykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCV-YKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK  164 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceE-EecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence            35678999999999999999999987753 334433333334445553333444444455444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.31  E-value=0.00036  Score=68.64  Aligned_cols=220  Identities=13%  Similarity=0.166  Sum_probs=118.6

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEE-EccCC
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINN-DVRVR  256 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vw-d~~~~  256 (458)
                      +.........+.++|+|+++++ ..+|.-.|+.....+....      +....+.|. .+.+++-...+.|.++ ++...
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE------EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc------CceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence            3334456889999999999998 5677888888444433221      233456773 4677787778889996 44322


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      .  ...+.. ...+..+-.   |.+|+..+.+ .|.+||+.++..      +.++..  .+|+.+.|++++..+.+.+  
T Consensus       101 ~--~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~------i~~i~v--~~vk~V~Ws~~g~~val~t--  163 (443)
T PF04053_consen  101 V--VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL------IRRIDV--SAVKYVIWSDDGELVALVT--  163 (443)
T ss_dssp             T--T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E------EEEESS---E-EEEEE-TTSSEEEEE---
T ss_pred             c--ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce------eeEEec--CCCcEEEEECCCCEEEEEe--
Confidence            2  112211 112333332   8888777665 899999998876      666653  2489999999877666663  


Q ss_pred             CCCCeEEEEECCCC-----------CeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEEeCC
Q 012679          337 GGDRCIKFWNTHTG-----------ACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAELSGH  402 (458)
Q Consensus       337 ~~d~~i~lwd~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~~~h  402 (458)
                        +..+.+++....           ..+..+.. ...|.+.+|..+  .++-++   .+.|+-  +..|+  .+..+   
T Consensus       164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT---~~~lkY--l~~Ge~~~i~~l---  231 (443)
T PF04053_consen  164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT---SNHLKY--LVNGETGIIAHL---  231 (443)
T ss_dssp             --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TTEEEE--EETTEEEEEEE----
T ss_pred             --CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc---CCeEEE--EEcCCcceEEEc---
Confidence              457777775443           12333333 678999999877  333322   235555  33332  23333   


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ..++.=+.+.|+.+.+.....|+.|..+.+..
T Consensus       232 d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  232 DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            34566677788777888889999999888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00024  Score=72.03  Aligned_cols=206  Identities=13%  Similarity=0.150  Sum_probs=134.1

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC-EEEEEEcCCCCEEEEEecCC-----eEEEEeCCCc-
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGP-VTSVNWAPDGRHIAIGLNNC-----QVQLWDSTAN-  215 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~-V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~-  215 (458)
                      -+.+++-+...++.+..+|.|.+.+-.-   ..+..+..+... |..+....+..+|++.+.|+     .|+|||++.- 
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4666666668899999999999997432   223455555555 55444444446777766654     5899998532 


Q ss_pred             -----eee---EEec--C-CCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc---CCCeeEEEEcccccceEeEEEcCCC
Q 012679          216 -----RQL---RTLR--G-GHRSRVGSLAWN--NHILTTGGMDGLIINNDVR---VRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       216 -----~~~---~~~~--~-~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~---~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                           .++   +.+.  . ....++.+++.+  -..+++|-.+|.|..+.-.   ..............+|+++.+..++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence                 233   2222  1 134567777774  4789999999999988422   1111122222346789999999998


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679          280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG  359 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~  359 (458)
                      +.++-+..-..|.+|.+....+     ....+..|...+.|.++++....++++    .+..+.+|+.....+...+..+
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~p-----~~~~ld~~G~~lnCss~~~~t~qfIca----~~e~l~fY~sd~~~~cfaf~~g  254 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRTP-----SLKVLDNNGISLNCSSFSDGTYQFICA----GSEFLYFYDSDGRGPCFAFEVG  254 (933)
T ss_pred             ceeEEEEecceeEEEEecCCCc-----ceeeeccCCccceeeecCCCCccEEEe----cCceEEEEcCCCcceeeeecCC
Confidence            8743334446899999884442     145577889999999999854445554    3568999998876666666543


Q ss_pred             C
Q 012679          360 S  360 (458)
Q Consensus       360 ~  360 (458)
                      .
T Consensus       255 ~  255 (933)
T KOG2114|consen  255 E  255 (933)
T ss_pred             C
Confidence            3

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.27  E-value=0.00028  Score=74.19  Aligned_cols=207  Identities=12%  Similarity=0.155  Sum_probs=132.6

Q ss_pred             cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC----CCC
Q 012679          226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR----SMA  299 (458)
Q Consensus       226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~----~~~  299 (458)
                      ...|.++.|  ++..++.+..+|.|.+.|..+...  .....-...|.+++|+||+..++..+.++++.+-+-    -..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            368899998  578899999999999998876653  333334678999999999999999999888876542    111


Q ss_pred             CCC----------Cccee---eeeeccc---------------------ccceeEEEecCCCCcEEEEeC--CCCCCeEE
Q 012679          300 SSN----------SVTQW---LHRLEEH---------------------TSAVKAIAWCPFQSNLLATGG--GGGDRCIK  343 (458)
Q Consensus       300 ~~~----------~~~~~---~~~~~~h---------------------~~~v~~l~~~p~~~~ll~s~~--g~~d~~i~  343 (458)
                      +..          ....|   ...+.+.                     ...=+.|.|--||.++.++.-  .+..+.|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            100          00000   0111110                     111235889888766655331  12238999


Q ss_pred             EEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEec-CCCCcEEEEeCCCce---eeEEEeCCCCcEEEEEEcCCCCEE
Q 012679          344 FWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHG-FTQNQLTLWKYPSMV---KMAELSGHTSRVLFMAQSPDGCTV  418 (458)
Q Consensus       344 lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg~~l  418 (458)
                      +||.. |..-.+- .....-.+++|-|.|..+++... .+++.|.+|.-+..+   ....+......|..++|+.++..|
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence            99987 4432222 22344678999999998887643 245568888754432   222222233448999999999999


Q ss_pred             EE---EeCCCcEEEEecCCC
Q 012679          419 AS---AAADETLRFWNVFGA  435 (458)
Q Consensus       419 ~s---~s~Dg~i~iW~~~~~  435 (458)
                      ++   ......|++|-+.+-
T Consensus       305 Av~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeeecccccceEEEEEecCe
Confidence            87   444455999988764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.23  E-value=0.0053  Score=58.28  Aligned_cols=281  Identities=15%  Similarity=0.144  Sum_probs=136.6

Q ss_pred             cccceeecc--CCCeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          142 YYLNLLDWG--SSNVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       142 ~~~~~~~~~--~~~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      +|+..=.|.  ++.++.++.   ...+++.|+.+++..++....+..  .....++|+++.++.......|.-.|+.+.+
T Consensus        36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGGFLSPDDRALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence            344444444  455666555   358999999999987776644322  2245667888888766666689999999987


Q ss_pred             eeEEecCCCcccEEEEEe----CCCeEEEEe---C-------------------CCcEEEEEccCCCeeEEEEcccccce
Q 012679          217 QLRTLRGGHRSRVGSLAW----NNHILTTGG---M-------------------DGLIINNDVRVRDHIVETYRGHNQEV  270 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~----~~~~l~sg~---~-------------------dg~i~vwd~~~~~~~~~~~~~h~~~v  270 (458)
                      ....+.. ....+....|    ++..++-.-   .                   ...|.-.|+.+++.  +.+..-...+
T Consensus       114 ~~~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~wl  190 (386)
T PF14583_consen  114 ERVVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTDWL  190 (386)
T ss_dssp             EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS-E
T ss_pred             EEEEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCccc
Confidence            6555543 4445544555    233332211   0                   12345556665542  3333345667


Q ss_pred             EeEEEcCCCC-EEEEEEC---CC-cEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeC--CCCCCe
Q 012679          271 CGLKWSASGQ-QLASGGN---DN-LLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGG--GGGDRC  341 (458)
Q Consensus       271 ~~l~~spd~~-~l~sg~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~--g~~d~~  341 (458)
                      ..+.|+|... +|+-|-+   +. .-+||-++.....     ...+..+  ...+..=-|.|+|..+...+.  |..+..
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~  265 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW  265 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence            7889999554 4444432   32 2367776654432     2222222  234455568999988877542  335678


Q ss_pred             EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC--------------CCcEEEEeCCCceeeEEE--------
Q 012679          342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT--------------QNQLTLWKYPSMVKMAEL--------  399 (458)
Q Consensus       342 i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~--------------d~~i~iwd~~~~~~~~~~--------  399 (458)
                      |.-+|..+++........ ....+.-+++++.++-=.+..              +-.|++++...+......        
T Consensus       266 i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v  344 (386)
T PF14583_consen  266 IAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKV  344 (386)
T ss_dssp             EEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------
T ss_pred             EEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCccee
Confidence            888999998765433332 344566677887776532211              125667888766543211        


Q ss_pred             -eCCCC-cEEEEEEcCCCCEEEEE-eCCCcEEEEecC
Q 012679          400 -SGHTS-RVLFMAQSPDGCTVASA-AADETLRFWNVF  433 (458)
Q Consensus       400 -~~h~~-~V~~l~~spdg~~l~s~-s~Dg~i~iW~~~  433 (458)
                       .++.. .=-...|+|||++|+-. ...|...||-+.
T Consensus       345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence             11111 11457899999987654 457887777654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.23  E-value=0.0031  Score=58.64  Aligned_cols=227  Identities=11%  Similarity=0.128  Sum_probs=132.8

Q ss_pred             CCCeEEEEcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe--------
Q 012679          151 SSNVLAIALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL--------  221 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~--------  221 (458)
                      .+.++.|..+| |++++.. ......+..    ...|..+...++-+.|++-+ ||.+.++++..-......        
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            45677776776 9999983 333322222    33499999999877766654 599999998765433311        


Q ss_pred             -----cCCCcccEEEEE----eCCCeEEEEeCCCcEEEEEccCCC----eeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679          222 -----RGGHRSRVGSLA----WNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGND  288 (458)
Q Consensus       222 -----~~~~~~~v~~l~----~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d  288 (458)
                           .......+..++    ..+...+.......|.+|......    ...+.+. -...+.+++|.  ++.++.|..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence                 111334455555    133444444445588888886531    2223332 34778889998  6677777654


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecc----------cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EE
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEE----------HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SV  356 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~  356 (458)
                       ...+.|+.++....    +.....          ...++..+.... +. +|++    .|..-.+.|. .|+..+  .+
T Consensus       158 -~f~~idl~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e-~Ll~----~~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  158 -GFYLIDLNTGSPSE----LLDPSDSSSSFKSRNSSSKPLGIFQLSD-NE-FLLC----YDNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             -ceEEEecCCCCceE----EeCccCCcchhhhcccCCCceEEEEeCC-ce-EEEE----ecceEEEEcC-CCCcCcccEE
Confidence             58888988655421    111111          122333444433 33 3333    3445555554 444433  44


Q ss_pred             eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                      .-...+.++++  ...++++.   .++.|.||++.+++.++++....
T Consensus       226 ~W~~~p~~~~~--~~pyli~~---~~~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  226 QWSSAPQSVAY--SSPYLIAF---SSNSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EcCCchhEEEE--ECCEEEEE---CCCEEEEEECcCCcEEEEEECCC
Confidence            44556667766  34577764   35779999999999998887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.20  E-value=0.00015  Score=70.84  Aligned_cols=135  Identities=18%  Similarity=0.179  Sum_probs=93.5

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEE----ecCCe----EEEEeCCCcee--eEEecCCCcccEE
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIG----LNNCQ----VQLWDSTANRQ--LRTLRGGHRSRVG  230 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g----~~dg~----v~iwd~~~~~~--~~~~~~~~~~~v~  230 (458)
                      .+.++.+..++.+.+..+.... ...++.|+. +...+.+.    +.+|.    -.+|++..++.  +........+.|.
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~-dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~  263 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTEN-DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI  263 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecC-CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence            5666666666666565555433 346788886 34444332    33443    35677665532  2222234778899


Q ss_pred             EEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          231 SLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       231 ~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      |.+++  ...|+.|+.||.|.+||...+..   .+....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  264 CCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99996  58999999999999999876532   233345567889999999999999999999999976543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=0.00093  Score=65.80  Aligned_cols=225  Identities=14%  Similarity=0.174  Sum_probs=118.1

Q ss_pred             ccccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          141 DYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       141 d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      +++...+.++| ++.++++.+|.-.|+.......  ..     .+.-....|.+.++ +|+-..++.|.|+.--..+...
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~--k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN--KA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE--EE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc--cc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence            45567788888 6799999999999998443322  11     12245688998555 6666668899997433444434


Q ss_pred             EecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679          220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      .+..  ...+..|-. |.+|...+.+ .|.+||+.++.. +..+..  ..|..+.|++++.++|..+.+ .+.|++....
T Consensus       104 ~i~~--~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~-i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  104 SIKL--PFSVEKIFG-GNLLGVKSSD-FICFYDWETGKL-IRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             ------SS-EEEEE--SSSEEEEETT-EEEEE-TTT--E-EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             EEcC--CcccceEEc-CcEEEEECCC-CEEEEEhhHcce-eeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence            4443  223333333 7777777655 899999997764 555543  248999999999999998865 6788775443


Q ss_pred             -----CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679          300 -----SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       300 -----~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  374 (458)
                           ...........+..-...|.+.+|..+  -++.+.   .. .|+.  +..|+.-.......++.-+.+.+..+.+
T Consensus       176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT---~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~l  247 (443)
T PF04053_consen  176 AVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT---SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRL  247 (443)
T ss_dssp             HHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred             hcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc---CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEE
Confidence                 000000012333333678999999874  555553   23 6766  4445443333335566666677766666


Q ss_pred             EEEecCCCCcEEEEeCC
Q 012679          375 LSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~  391 (458)
                      +..  ..++.+..+.++
T Consensus       248 y~~--Dr~~~v~~~~ld  262 (443)
T PF04053_consen  248 YLI--DRDGNVISYELD  262 (443)
T ss_dssp             EEE---TT--EEEEE--
T ss_pred             EEE--ECCCCEEEEEEC
Confidence            663  256666666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=0.0073  Score=59.80  Aligned_cols=247  Identities=11%  Similarity=0.081  Sum_probs=131.5

Q ss_pred             EEEEEEcCCCCEEEEEe-cCC----eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC-----------Cc
Q 012679          186 VTSVNWAPDGRHIAIGL-NNC----QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD-----------GL  247 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~-~dg----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d-----------g~  247 (458)
                      +....++|+|++||.+- ..|    .|+++|+.+++.+.....  ......+.|  ++..|+....+           ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34678899999999874 334    599999999987764321  122234899  34555554432           23


Q ss_pred             EEEEEccCCCee-EEEEcccccc--eEeEEEcCCCCEEEEEEC---C-CcEEEEeCCCCC-CCCcceeeeeeccccccee
Q 012679          248 IINNDVRVRDHI-VETYRGHNQE--VCGLKWSASGQQLASGGN---D-NLLHIWDRSMAS-SNSVTQWLHRLEEHTSAVK  319 (458)
Q Consensus       248 i~vwd~~~~~~~-~~~~~~h~~~--v~~l~~spd~~~l~sg~~---d-g~i~iwd~~~~~-~~~~~~~~~~~~~h~~~v~  319 (458)
                      |+.|.+.+.... ...+......  ...+..++|+++|+....   + ..+.+.|+.... ....   ...+......+.
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~---~~~l~~~~~~~~  280 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK---PKLLSPREDGVE  280 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S---EEEEEESSSS-E
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC---cEEEeCCCCceE
Confidence            788888765432 2334333322  568889999999875443   2 457888887641 1111   233333333333


Q ss_pred             EEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---e-EEEeCCCCeEEEEEcCCCCeEEEEec-CCCCcEEEEeCCCce
Q 012679          320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---L-NSVDTGSQVCALLWNKNERELLSSHG-FTQNQLTLWKYPSMV  394 (458)
Q Consensus       320 ~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~-~~~~~~~~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~~~~  394 (458)
                      ...-+..+..++.+..+...+.|.-.++.+...   . ..+.....+.-..+...+..|+...- .....|.++++..+.
T Consensus       281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            322222334455555455667888888887763   2 22333333333334445555555321 123368899998334


Q ss_pred             eeEEEeC-CCCcEEEEEEcCCCCEEE-EEeC---CCcEEEEecCCCCc
Q 012679          395 KMAELSG-HTSRVLFMAQSPDGCTVA-SAAA---DETLRFWNVFGAPQ  437 (458)
Q Consensus       395 ~~~~~~~-h~~~V~~l~~spdg~~l~-s~s~---Dg~i~iW~~~~~~~  437 (458)
                      ....+.. -.+.|..+...+++..+. +.+.   -+++.-||+.+++.
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            4333332 334566666666655443 3222   25677788776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.12  E-value=0.0094  Score=58.64  Aligned_cols=197  Identities=13%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec------CCCcccEEEEEeC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWN  235 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~  235 (458)
                      .|.||+... +......+..  +.|.++.|+.+. .|++-..||.+++||+.... ...+.      .-....+....+.
T Consensus        62 ~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCC-CEeEEEEECC--CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence            599998754 4433344443  789999999865 56677799999999986333 11111      0012223333332


Q ss_pred             CCeEEEEeCCCcEEEEEccCCCeeEEEEc---c-----cccce-E-eEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          236 NHILTTGGMDGLIINNDVRVRDHIVETYR---G-----HNQEV-C-GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---~-----h~~~v-~-~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      ++-++.-..++.+.+..--........+.   .     |.... . -..++.+....+....++.+.+.+-....     
T Consensus       137 ~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~-----  211 (410)
T PF04841_consen  137 KNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK-----  211 (410)
T ss_pred             CCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----
Confidence            12233334445554432211111111111   0     00000 0 12344455555555555666644422210     


Q ss_pred             eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEE
Q 012679          306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLS  376 (458)
Q Consensus       306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~  376 (458)
                          .+ ...+++..++.||+++.+....   .+|.+.+....-.+.+..++.+  .....+.|.-+...++.
T Consensus       212 ----~i-~~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~  276 (410)
T PF04841_consen  212 ----QI-DSDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS  276 (410)
T ss_pred             ----cc-cCCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence                11 1246799999999877665543   6789999887777777777765  66788888876544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.11  E-value=0.0018  Score=61.72  Aligned_cols=215  Identities=13%  Similarity=0.110  Sum_probs=125.6

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEE---cCC----CCEEEEEec---------C-CeEEEEeCCCc-----eee
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNW---APD----GRHIAIGLN---------N-CQVQLWDSTAN-----RQL  218 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~---s~~----g~~la~g~~---------d-g~v~iwd~~~~-----~~~  218 (458)
                      +.|++.|..+.+......+.. ...+++++.   ..+    ..+|++|+.         . |.|.++++...     +..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            478999988888766666664 344665554   322    578888864         2 89999999884     222


Q ss_pred             EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      ........++|.+++--+..|+++. .+.|.+|++.... ............+.++...  +++++.|.....+.++.++
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred             EEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence            2222226788999987554544444 4789999998777 3222222233356666654  6699999988888887554


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-------CC----eeEEEeCCCCeEEE-
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-------GA----CLNSVDTGSQVCAL-  365 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-------~~----~~~~~~~~~~v~~~-  365 (458)
                      ....  ... ...-......+.++.+-+++. .++.+.  .+|.+.++....       +.    ....+..+..|+++ 
T Consensus       158 ~~~~--~l~-~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~  231 (321)
T PF03178_consen  158 EENN--KLI-LVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR  231 (321)
T ss_dssp             TTTE---EE-EEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred             ccCC--EEE-EEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence            4211  011 111123355688888886665 545444  899999987652       22    34455667888888 


Q ss_pred             --EEcC--CCCe------EEEEecCCCCcEEE
Q 012679          366 --LWNK--NERE------LLSSHGFTQNQLTL  387 (458)
Q Consensus       366 --~~s~--~~~~------l~~~~g~~d~~i~i  387 (458)
                        .+.|  .+..      ++.  ++.+|.|.+
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~--~T~~G~Ig~  261 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILY--GTVDGSIGV  261 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEE--EETTS-EEE
T ss_pred             EEEeeecCCCCcccccceEEE--EecCCEEEE
Confidence              4445  2222      444  336777763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.10  E-value=0.011  Score=59.98  Aligned_cols=283  Identities=12%  Similarity=0.108  Sum_probs=159.9

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEE---E-------EEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVT---S-------VNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~---~-------v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      .+.+++++.++.|+-.|..+|+.  +.+..... ..+.   +       +++  .+..+++++.||.|.-.|..+|+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~--lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKE--LWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCce--eeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            35677777788999999999987  44432111 1111   1       122  23567788899999999999999988


Q ss_pred             EecCCCcc---cEEE-EEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEcccc----------------------
Q 012679          220 TLRGGHRS---RVGS-LAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRGHN----------------------  267 (458)
Q Consensus       220 ~~~~~~~~---~v~~-l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h~----------------------  267 (458)
                      ........   .+.+ -...+..++.+.      .+|.|..+|.++++.+-.......                      
T Consensus       145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            76531111   1111 111234455543      268899999988875432111100                      


Q ss_pred             --------cce-EeEEEcCCCCEEEEEECC-----C-----------cEEEEeCCCCCCCCcceeeeeeccccc------
Q 012679          268 --------QEV-CGLKWSASGQQLASGGND-----N-----------LLHIWDRSMASSNSVTQWLHRLEEHTS------  316 (458)
Q Consensus       268 --------~~v-~~l~~spd~~~l~sg~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~~~h~~------  316 (458)
                              ..+ ..+++.|...++..+...     +           .|.-.|+++++.    ++..+...|..      
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~----~W~~Q~~~~D~wD~d~~  300 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI----KWHYQTTPHDEWDYDGV  300 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE----EEeeeCCCCCCccccCC
Confidence                    011 134566666666655422     1           455566666654    23333333321      


Q ss_pred             -ceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEE------------e--CCCC------------------
Q 012679          317 -AVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSV------------D--TGSQ------------------  361 (458)
Q Consensus       317 -~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~------------~--~~~~------------------  361 (458)
                       ...-+....++.  .+++.+.  .+|.+.+.|-.+|+.+...            .  ...+                  
T Consensus       301 ~~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  378 (527)
T TIGR03075       301 NEMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG  378 (527)
T ss_pred             CCcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence             111122223444  4666655  9999999999999986221            0  0000                  


Q ss_pred             ----------eEEEEEcCCCCeEEEEecC-------------------------------CCCcEEEEeCCCceeeEEEe
Q 012679          362 ----------VCALLWNKNERELLSSHGF-------------------------------TQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       362 ----------v~~~~~s~~~~~l~~~~g~-------------------------------~d~~i~iwd~~~~~~~~~~~  400 (458)
                                -..++++|+...+++..+.                               .-+.|.-+|+.+++.+-...
T Consensus       379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~  458 (527)
T TIGR03075       379 VCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK  458 (527)
T ss_pred             ECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec
Confidence                      1125566666665543221                               12457778888888777664


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      ......-+. +.-.|..++.++.||.++.+|..+++++.+....
T Consensus       459 ~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       459 EDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            322111111 1124557777888999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=0.0028  Score=55.82  Aligned_cols=122  Identities=12%  Similarity=0.068  Sum_probs=85.3

Q ss_pred             CCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE
Q 012679          195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL  273 (458)
Q Consensus       195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l  273 (458)
                      ..+++.|+..+.+.-.|..+|+....-.  -..++-+-+. -|++++.|+..|.+++.+..++..... +..-..--...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~-f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWN-FVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheee-eeehhhhccce
Confidence            4678889999999999999998877654  3344444333 477899999999999999999865332 22211111234


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      ...+++.++..|+.|++.+..|.++...      +.+.+...+...+-+..|
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~c------VykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGC------VYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccce------EEecccCCceeccceecC
Confidence            4567999999999999999999988776      555444333333344445

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.03  E-value=0.01  Score=58.39  Aligned_cols=198  Identities=11%  Similarity=0.078  Sum_probs=102.9

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCee-----EEEEcccccceEeEEEcCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHI-----VETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~-----~~~~~~h~~~v~~l~~spd~  279 (458)
                      .|.||+. .|+.+..+.-.+ +.+.++.|+ ...|++-..||.+++||+......     +....-....+....+..+|
T Consensus        62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECC-CCCEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            4888874 455666665424 899999995 678889999999999998633200     00001111122222333355


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCC-Cc--cee--eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679          280 QQLASGGNDNLLHIWDRSMASSN-SV--TQW--LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN  354 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~-~~--~~~--~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~  354 (458)
                      -.++  ..++.+.+.+-...... ..  ..+  ......+........++.+....+...   .++.+.+.+....+   
T Consensus       140 ivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~---  211 (410)
T PF04841_consen  140 IVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK---  211 (410)
T ss_pred             EEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc---
Confidence            3333  34455544432221100 00  000  000000111000022333323222222   34455544433221   


Q ss_pred             EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCC
Q 012679          355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDG  415 (458)
Q Consensus       355 ~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg  415 (458)
                      .+...+++..++.||++++++..+  .+|.+.|.+..-.+.+.++... ......|.|.-+.
T Consensus       212 ~i~~~~~i~~iavSpng~~iAl~t--~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  212 QIDSDGPIIKIAVSPNGKFIALFT--DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             cccCCCCeEEEEECCCCCEEEEEE--CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            134457899999999999998865  6789989887666666666543 3456677776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.016  Score=56.48  Aligned_cols=263  Identities=14%  Similarity=0.136  Sum_probs=167.3

Q ss_pred             EEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-eEEEEeCCCceeeEEecCCCcccEEEEEe--CC-Ce
Q 012679          163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NN-HI  238 (458)
Q Consensus       163 v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~-~~  238 (458)
                      +.+++..+........+.  . ....+...+++..+.+....+ .+.+.+............ -...-..++.  .+ ..
T Consensus        13 ~~v~~~~~~~~~~~~~~~--~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~-g~~~p~~i~v~~~~~~v   88 (381)
T COG3391          13 VSVINTGTNKVTAAISLG--R-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSV-GGVYPAGVAVNPAGNKV   88 (381)
T ss_pred             eEEEeecccEEEEEeecC--C-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccC-CCccccceeeCCCCCeE
Confidence            566665555442222222  2 456778888886555543222 455555542222222221 1122234444  33 45


Q ss_pred             EEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679          239 LTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLEEHT  315 (458)
Q Consensus       239 l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~  315 (458)
                      .+....+..|.+.|............+.  ....++++++++.+..+..   ++++.+.|..+...      ......-.
T Consensus        89 yv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~------~~~~~vG~  160 (381)
T COG3391          89 YVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV------TATIPVGN  160 (381)
T ss_pred             EEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE------EEEEecCC
Confidence            6666667899999976655432333333  5678999999988766655   68888888777655      33332222


Q ss_pred             cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-----EEeCCCCeEEEEEcCCCCeEEEEecCC-CCcEEEEe
Q 012679          316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-----SVDTGSQVCALLWNKNERELLSSHGFT-QNQLTLWK  389 (458)
Q Consensus       316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~g~~-d~~i~iwd  389 (458)
                      .+ ..+++.|++..++++..  .++.|.+.|..+.....     .+........+.+++++.++.++.... ++.+...|
T Consensus       161 ~P-~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id  237 (381)
T COG3391         161 TP-TGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID  237 (381)
T ss_pred             Cc-ceEEECCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence            33 88999999998888765  78999999977766653     233455678899999999887765433 36899999


Q ss_pred             CCCceeeEE-EeCCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCcccc
Q 012679          390 YPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNVFGAPQVIS  440 (458)
Q Consensus       390 ~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iW~~~~~~~~~~  440 (458)
                      ..++..... +..-......+..+|+|..+.+.... +.+.+-|.........
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            988877665 22111145678999999998877544 7888888776555443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.022  Score=55.53  Aligned_cols=225  Identities=13%  Similarity=0.100  Sum_probs=150.3

Q ss_pred             CCEEEEEEcCCCCEEEE-EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeC---CCcEEEEEccCCCee
Q 012679          184 GPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGM---DGLIINNDVRVRDHI  259 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~---dg~i~vwd~~~~~~~  259 (458)
                      ..-..++.++.+..+.+ ...++.|.+.|..+.+.......+....-..+.++++.+..+..   ++.+.+.|..+....
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            34567888888885544 44557999999888888887775453333333335655555544   688889988877654


Q ss_pred             EEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC
Q 012679          260 VETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      .. ...-..+ ..++++|+|+.+..+. .++.|.+.|........ ....... .-...-..+++.|++..+.++..++.
T Consensus       154 ~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         154 AT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc-ccCCCCceEEECCCCCEEEEEeccCC
Confidence            44 3322234 8899999999766555 78999999966654311 0000011 11223457899999998888876445


Q ss_pred             CCeEEEEECCCCCeeEE-EeCCC-CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC---cEEEEEEcC
Q 012679          339 DRCIKFWNTHTGACLNS-VDTGS-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS---RVLFMAQSP  413 (458)
Q Consensus       339 d~~i~lwd~~~~~~~~~-~~~~~-~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~---~V~~l~~sp  413 (458)
                      ++.+...|..++..... ..... ....+..+|+++.+.+... ..+.+.+.|..+............   .+..+++.+
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            57999999999887776 22222 6788999999999998753 368899999988877776543332   244555544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.91  E-value=0.0036  Score=56.06  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=36.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ...|..+..+|+|..|++.+  .+|.|.+|++++........-+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih--~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIH--FSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCceEEEEECCCCCEEEEEE--cCCeEEEEecCcchhhcccchh
Confidence            45699999999999999987  7999999999998887766533

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00019  Score=71.32  Aligned_cols=117  Identities=12%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             EEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          229 VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       229 v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      .+|++-+.++++.|+.-|.+++|+-..+........+..+.++.+..+++..++|.|+..|.|.++-++........ .+
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~-~~  116 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD-YV  116 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce-ee
Confidence            45666678999999999999999987776544555556677888889999999999999999999998874433222 22


Q ss_pred             eee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          309 HRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       309 ~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      ... ..|...|++++|++++..++. |  ...|+|.+-.+.+
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ys-G--D~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYS-G--DSQGKVVLTELDS  155 (726)
T ss_pred             ccccccCCceEEEEEecccccEEee-c--CCCceEEEEEech
Confidence            222 237889999999998666654 3  4789998887776

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.83  E-value=0.017  Score=53.55  Aligned_cols=227  Identities=11%  Similarity=0.112  Sum_probs=123.2

Q ss_pred             CCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCeeEEE--------
Q 012679          193 PDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVET--------  262 (458)
Q Consensus       193 ~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~--------  262 (458)
                      ..++.|++|+.+| |.+++.........+.  +...|..+..-.  +.|++-+ |+.+.++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3678999999998 9999984333333333  333488887732  4444443 499999998754332210        


Q ss_pred             -----EcccccceEeEE---EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          263 -----YRGHNQEVCGLK---WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       263 -----~~~h~~~v~~l~---~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                           .......+...+   -......|+++ ....|.+|.......... .....+. -...+.+++|.+  ..+ +.|
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~-~~~ke~~-lp~~~~~i~~~~--~~i-~v~  154 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS-KLLKEIS-LPDPPSSIAFLG--NKI-CVG  154 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccc-ceeEEEE-cCCCcEEEEEeC--CEE-EEE
Confidence                 111222333333   11233344444 445899988776422110 1133332 347788999984  344 443


Q ss_pred             CCCCCCeEEEEECCCCCeeEEEeCCC-------------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE--EE
Q 012679          335 GGGGDRCIKFWNTHTGACLNSVDTGS-------------QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA--EL  399 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~~~~~~~~~-------------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~--~~  399 (458)
                         ..+...+.|+.++.....+....             ++..+.. +++.+|++    .++.-.+.|. .|+...  .+
T Consensus       155 ---~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~----~~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  155 ---TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC----YDNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             ---eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE----ecceEEEEcC-CCCcCcccEE
Confidence               35568899999877654442211             2223333 33444443    1333333333 333322  33


Q ss_pred             eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          400 SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       400 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      .- ...+.++++.  ..+|+..+. +.|-||++.+++.+....
T Consensus       226 ~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  226 QW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             Ec-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            32 2345566663  457776655 559999999997765544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.79  E-value=0.0007  Score=70.38  Aligned_cols=142  Identities=16%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             CCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-------CCeEEEEeCCCcEEEEEccCCCe-eEE-EEc
Q 012679          195 GRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-------NHILTTGGMDGLIINNDVRVRDH-IVE-TYR  264 (458)
Q Consensus       195 g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~sg~~dg~i~vwd~~~~~~-~~~-~~~  264 (458)
                      .++|+.- .....|+-.|+++|+.+.........+|..++.+       +...+.|-.+..+..||.|.... ++. ...
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 3456899999999999999997444558888763       45677888889999999997642 221 111


Q ss_pred             --ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679          265 --GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI  342 (458)
Q Consensus       265 --~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i  342 (458)
                        .......|++-+.+| +||+|+.+|.|++||--....      ...+.+-..+|..|..+.+|.++|||+    +..|
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~A------KT~lp~lG~pI~~iDvt~DGkwilaTc----~tyL  641 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRA------KTALPGLGDPIIGIDVTADGKWILATC----KTYL  641 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhh------hhcCCCCCCCeeEEEecCCCcEEEEee----cceE
Confidence              233456777766665 799999999999999432221      344556678999999999999999996    6788


Q ss_pred             EEEEC
Q 012679          343 KFWNT  347 (458)
Q Consensus       343 ~lwd~  347 (458)
                      .|+++
T Consensus       642 lLi~t  646 (794)
T PF08553_consen  642 LLIDT  646 (794)
T ss_pred             EEEEE
Confidence            88886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.77  E-value=0.017  Score=55.86  Aligned_cols=231  Identities=15%  Similarity=0.209  Sum_probs=125.8

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCC----------------CCCEEEEEEcCCCCEEEEEecC-
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDE----------------NGPVTSVNWAPDGRHIAIGLNN-  204 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----------------~~~V~~v~~s~~g~~la~g~~d-  204 (458)
                      .+....|++ ++.++...++.|++++..++...++.. .+.                -+.-..+-|||||++||....| 
T Consensus        44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~  122 (353)
T PF00930_consen   44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE  122 (353)
T ss_dssp             TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred             ccccceeecCCCeeEEEecCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence            455678887 678888889999999988875443332 220                1123568899999999876433 


Q ss_pred             Ce-----------------------------------EEEEeCCCceeeE-Eec---CCCcccEEEEEe--CCCeEEEE-
Q 012679          205 CQ-----------------------------------VQLWDSTANRQLR-TLR---GGHRSRVGSLAW--NNHILTTG-  242 (458)
Q Consensus       205 g~-----------------------------------v~iwd~~~~~~~~-~~~---~~~~~~v~~l~~--~~~~l~sg-  242 (458)
                      ..                                   +.|+|+.+++... ...   .....-+..+.|  ++..|+.. 
T Consensus       123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~  202 (353)
T PF00930_consen  123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW  202 (353)
T ss_dssp             TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred             cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence            11                                   3334444443321 111   113345666777  33323322 


Q ss_pred             -eCCC---cEEEEEccCCCeeEEEEcccccc---eEeEEEc-CCCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679          243 -GMDG---LIINNDVRVRDHIVETYRGHNQE---VCGLKWS-ASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE  313 (458)
Q Consensus       243 -~~dg---~i~vwd~~~~~~~~~~~~~h~~~---v~~l~~s-pd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  313 (458)
                       .++.   .+.+.|..++...+.........   -....|. +++. +|.....||--+||-+......     ...+..
T Consensus       203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~~lT~  277 (353)
T PF00930_consen  203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PRQLTS  277 (353)
T ss_dssp             EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EEESS-
T ss_pred             cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----eecccc
Confidence             3332   35566776554322221112222   2245554 5555 4445556776555544333321     345555


Q ss_pred             cccceeE-EEecCCCCcEEEEeCC--CCCCeEEEEECCCCCeeEEEeCCCCeE-EEEEcCCCCeEEEEec
Q 012679          314 HTSAVKA-IAWCPFQSNLLATGGG--GGDRCIKFWNTHTGACLNSVDTGSQVC-ALLWNKNERELLSSHG  379 (458)
Q Consensus       314 h~~~v~~-l~~~p~~~~ll~s~~g--~~d~~i~lwd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~g  379 (458)
                      ..-.|.. +.|++.+..++.++.+  .....|..-++..+..+..+....... .+.|+|++++++..+.
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            5566644 7788888888888763  224467777777445556665555444 9999999999987653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00013  Score=71.57  Aligned_cols=90  Identities=18%  Similarity=0.379  Sum_probs=72.9

Q ss_pred             cceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEE-EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          144 LNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT-SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~-~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +--+.|+|  +-++.+..+|.|.+..+.   ..++.+++-|+..++ +++|.|||+.||+|-.||+|++.|++++..+..
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            34578988  446777788999999887   344788887777787 999999999999999999999999999998887


Q ss_pred             ecCCCcccEEEEEeCC
Q 012679          221 LRGGHRSRVGSLAWNN  236 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~~  236 (458)
                      ....-...|.++-|+.
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            4433667788888863

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.77  E-value=0.002  Score=67.01  Aligned_cols=134  Identities=16%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEeCCCc--eeeEEec--CCCcccEE
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-----DGRHIAIGLNNCQVQLWDSTAN--RQLRTLR--GGHRSRVG  230 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-----~g~~la~g~~dg~v~iwd~~~~--~~~~~~~--~~~~~~v~  230 (458)
                      .+.|+-.|++.|++..-..+.. ..+|..++-..     +.....+|-.+..+..||.+-.  +.+..-.  -.......
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            5789999999999954444432 23355543221     1334567888889999998753  2332111  11445677


Q ss_pred             EEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          231 SLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       231 ~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      |++-. ..+||+|+.+|.|++||- .+......+.+-..+|.+|..+.||+++++.+. ..|.+++.
T Consensus       582 ~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            88875 589999999999999994 344445567788899999999999999877665 56667764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.74  E-value=0.011  Score=53.36  Aligned_cols=164  Identities=16%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679          180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       180 ~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      .+-...|.++.|+|+.+.|++....+.-.|+=...|+.++++.-..-...-.+.|  ++.+.++--+++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445569999999999999998888888888778899999887534444556677  45566666678888888776553


Q ss_pred             eeEE------EE---cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc-------ccceeEE
Q 012679          258 HIVE------TY---RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH-------TSAVKAI  321 (458)
Q Consensus       258 ~~~~------~~---~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l  321 (458)
                      ..+.      .+   ...+...-+++|.|.+..|..+-+-+-+.||..........   .+....+       -..|.++
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~---~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS---VHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc---cccccCcccccceEeeccccc
Confidence            2111      11   11255678899999999999998888888887764432100   1111112       2347788


Q ss_pred             EecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          322 AWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      .|++..+.+++-+.  +++.+...|..
T Consensus       239 ~~~~~~~~LLVLS~--ESr~l~Evd~~  263 (316)
T COG3204         239 EFNAITNSLLVLSD--ESRRLLEVDLS  263 (316)
T ss_pred             eecCCCCcEEEEec--CCceEEEEecC
Confidence            89987788888765  77777777754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.74  E-value=0.0084  Score=57.14  Aligned_cols=134  Identities=11%  Similarity=0.156  Sum_probs=92.1

Q ss_pred             CEEEEEECCCC-----CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-eeEEecCCCcccEEEEEe
Q 012679          161 STVYLWDASDG-----TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLRGGHRSRVGSLAW  234 (458)
Q Consensus       161 ~~v~iwd~~~~-----~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~v~~l~~  234 (458)
                      |.|+++++...     ++..+... ...++|++++-- +| +|+++. .+.|.+|++...+ ....-.......+.++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999999884     44434333 346889999876 34 455554 4689999998877 444333224458888888


Q ss_pred             CCCeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          235 NNHILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       235 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      .+++++.|+....+.++..+.....+..+  ......++++.+-++++.++.+..+|.+.++....
T Consensus       138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            88899999998888888665433212222  22355688899987777999999999999998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.73  E-value=0.0079  Score=58.52  Aligned_cols=194  Identities=13%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec-------CCCcccEEEEEe-------CC---C
Q 012679          175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR-------GGHRSRVGSLAW-------NN---H  237 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~-------~~~~~~v~~l~~-------~~---~  237 (458)
                      +..-+....++|++++.|.= -++|+|..+|.+.|.|++....+..-.       ......|+++.|       ++   -
T Consensus        78 P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            34444455789999999844 499999999999999998877666522       123456888888       22   4


Q ss_pred             eEEEEeCCCcEEEEEccC--CCe----eEEEEcccccceEeEE-EcCC-C-------------------CEEEEEECCCc
Q 012679          238 ILTTGGMDGLIINNDVRV--RDH----IVETYRGHNQEVCGLK-WSAS-G-------------------QQLASGGNDNL  290 (458)
Q Consensus       238 ~l~sg~~dg~i~vwd~~~--~~~----~~~~~~~h~~~v~~l~-~spd-~-------------------~~l~sg~~dg~  290 (458)
                      .+++|...|.+.+|.+.-  +..    .......+.+.|..+. ++.+ |                   +.++....+..
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            688999999999998752  121    1112224556665554 3221 1                   12344445678


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecC----CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-----
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP----FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-----  361 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p----~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-----  361 (458)
                      ++++...+.+.      .++..........+.+-+    .+...|++-.  .+|.|+++.+..-+.+..+.....     
T Consensus       237 irv~~~~~~k~------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~  308 (395)
T PF08596_consen  237 IRVFKPPKSKG------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRR  308 (395)
T ss_dssp             EEEE-TT---E------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHH
T ss_pred             eEEEeCCCCcc------cceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCcccccc
Confidence            99998776654      333333222333344421    2344444444  799999999999998888766432     


Q ss_pred             eEEEEEcCCCCeEEEE
Q 012679          362 VCALLWNKNERELLSS  377 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~  377 (458)
                      +....++++|..++.+
T Consensus       309 ~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  309 LSSSSISRNGDIFYWT  324 (395)
T ss_dssp             HTT-EE-TTS-EEEE-
T ss_pred             ccccEECCCCCEEEEe
Confidence            3445667777766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.71  E-value=0.036  Score=50.18  Aligned_cols=198  Identities=13%  Similarity=0.150  Sum_probs=108.8

Q ss_pred             CcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          225 HRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       225 ~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      -...+..|+|+   +.++++....+.|..++.+ +. ++..+. ...+..-+|++..++.++++--.++.+.++++....
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            44569999995   3577777888888888864 33 444443 224567889998888777766668999999985443


Q ss_pred             CCCcceeeeee-----cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC---CCeeEEEe---------CCCCeE
Q 012679          301 SNSVTQWLHRL-----EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT---GACLNSVD---------TGSQVC  363 (458)
Q Consensus       301 ~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~---~~~~~~~~---------~~~~v~  363 (458)
                      ..........+     ..+...+..++|.|.+..++++-   ...-..++.+..   ...+....         .-..+.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            22111111111     13456689999999888888764   444445555443   22222111         124578


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC---------CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT---------SRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~---------~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      ++.++|....+++.+ .....|..+| .+++.+..+.-..         ...-.|+|.++|++.+ .+.-+..+++
T Consensus       175 ~l~~~p~t~~lliLS-~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILS-DESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEE-TTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEE-CCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            999999887777664 3678888898 6676655443111         2467899999997655 4565544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.0019  Score=63.48  Aligned_cols=166  Identities=13%  Similarity=0.108  Sum_probs=106.5

Q ss_pred             EEcccccceEeEEEcCCCCEEEEEE---CC-CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGG---ND-NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      .+..-...+..-+|+|++..++...   .. ..+.++|+..+....    +..+.+   .-..-+|+|++..++.+....
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~----i~~~~g---~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV----ILNFNG---NNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce----eeccCC---ccCCccCCCCCCEEEEEECCC
Confidence            3334455677788999998876542   22 469999999887632    223333   334578999999999988743


Q ss_pred             CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      ..-.|.+.|+.++...+.....+.-+.-.|+|+|+.++.++. ..|  .|.+++.+.... ..+......-..-.|+|||
T Consensus       260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG  337 (425)
T COG0823         260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSD-RGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDG  337 (425)
T ss_pred             CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeC-CCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCC
Confidence            344577778888774442233334457789999999998753 444  466666665544 3333333322377899999


Q ss_pred             CEEEEEeCC-Cc--EEEEecCCCC
Q 012679          416 CTVASAAAD-ET--LRFWNVFGAP  436 (458)
Q Consensus       416 ~~l~s~s~D-g~--i~iW~~~~~~  436 (458)
                      .+|+..+.. |.  |.+.++.++.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCC
Confidence            999887753 44  5555554444

>smart00320 WD40 WD40 repeats

Probab=97.70  E-value=0.00014  Score=44.05  Aligned_cols=38  Identities=42%  Similarity=0.650  Sum_probs=34.0

Q ss_pred             eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      +.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.0037  Score=48.09  Aligned_cols=99  Identities=15%  Similarity=0.262  Sum_probs=69.3

Q ss_pred             EEEEEEcC---CC-CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeE
Q 012679          186 VTSVNWAP---DG-RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       186 V~~v~~s~---~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~  260 (458)
                      |+++++..   || +.|++|+.|..|++|+  ..+.+..+.  ....|.+|.- .+..++.+-.+|+|-+|+-....   
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~--e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT--ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe--cccceEEEEEcCCCEEEEEecCCEEEEEeCccee---
Confidence            56666654   32 5899999999999998  446777777  5677888777 57899999999999999864332   


Q ss_pred             EEEcccccceEeEEEcC-C--C-CEEEEEECCCcEE
Q 012679          261 ETYRGHNQEVCGLKWSA-S--G-QQLASGGNDNLLH  292 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~sp-d--~-~~l~sg~~dg~i~  292 (458)
                      -..+. ...++++.+.. +  | ..|++|-.+|.|-
T Consensus        75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            22222 23355565543 2  2 3688888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00057  Score=67.17  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=76.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE-EEEe--CCCeEEEEeCCCcEEEEEccCCCee
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG-SLAW--NNHILTTGGMDGLIINNDVRVRDHI  259 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  259 (458)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.. +...++ +++|  +|+.|+.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            3458889999999999999999999999988 777888886 666666 9999  6899999999999999999988765


Q ss_pred             EEEEcccccceEeEEEc
Q 012679          260 VETYRGHNQEVCGLKWS  276 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~s  276 (458)
                      ......-...|.++.|.
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            44444455677777776

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.46  E-value=0.011  Score=60.47  Aligned_cols=217  Identities=15%  Similarity=0.173  Sum_probs=123.3

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C-----eEEEEeCCCceeeE--EecCCCcccEEEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C-----QVQLWDSTANRQLR--TLRGGHRSRVGSL  232 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g-----~v~iwd~~~~~~~~--~~~~~~~~~v~~l  232 (458)
                      ..+..||..++.+..+..+..... -.+++.. +|...++|+.| |     .+..||..+++-..  .+.. ........
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~  377 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVA  377 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-ccccceeE
Confidence            478999999998877776664333 3344443 55778888888 3     57888887776332  2222 33445555


Q ss_pred             EeCCCeEEEEeCCCc-----EEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC------cEEEEeCCCCC
Q 012679          233 AWNNHILTTGGMDGL-----IINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN------LLHIWDRSMAS  300 (458)
Q Consensus       233 ~~~~~~l~sg~~dg~-----i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg------~i~iwd~~~~~  300 (458)
                      ..+|.+.++|+.||.     |-.||..+..... ..+.........+.  -+|.+.++||.++      .+..||..+..
T Consensus       378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            668999999999974     6778887665311 11111111122222  2688888888654      46788877765


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-----eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-----CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL  375 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-----~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  375 (458)
                      ..........-..+.     ++.  .+..+++.||  .|+     ++..||..+.+....-..............+..++
T Consensus       456 W~~~~~M~~~R~~~g-----~a~--~~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly  526 (571)
T KOG4441|consen  456 WTLIAPMNTRRSGFG-----VAV--LNGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLY  526 (571)
T ss_pred             eeecCCcccccccce-----EEE--ECCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEE
Confidence            422111111111111     222  2467778775  444     37788888877655433333444444444455555


Q ss_pred             EEecCCCC-----cEEEEeCCC
Q 012679          376 SSHGFTQN-----QLTLWKYPS  392 (458)
Q Consensus       376 ~~~g~~d~-----~i~iwd~~~  392 (458)
                      +..| .+|     +|..||..+
T Consensus       527 ~vGG-~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  527 AVGG-FDGNNNLNTVECYDPET  547 (571)
T ss_pred             EEec-ccCccccceeEEcCCCC
Confidence            5545 333     455565443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.45  E-value=0.067  Score=46.75  Aligned_cols=205  Identities=11%  Similarity=0.088  Sum_probs=118.2

Q ss_pred             CCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---C-CCeEEEE-eCCCcEEEEEccCCCe-eEEEEc----
Q 012679          195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---N-NHILTTG-GMDGLIINNDVRVRDH-IVETYR----  264 (458)
Q Consensus       195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~-~~~l~sg-~~dg~i~vwd~~~~~~-~~~~~~----  264 (458)
                      +.++.+--..|.|.-||+.+.+..+.--.  ..++.++.+   + +..++++ +..-.|.-||...... +..++.    
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie--~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIE--GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEe--cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            34555555566777788877654443221  111333333   2 2333333 3334455676432221 112211    


Q ss_pred             -ccccceEeEEEcCCCCEEEEEEC---------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          265 -GHNQEVCGLKWSASGQQLASGGN---------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       265 -~h~~~v~~l~~spd~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                       ......+.-..+|+|++++-.-.         .|.++.|-....        +..+...-.--..++|+.+...+.++-
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--------v~~i~~~v~IsNgl~Wd~d~K~fY~iD  176 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--------VELIWNCVGISNGLAWDSDAKKFYYID  176 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--------ceeeehhccCCccccccccCcEEEEEc
Confidence             11334556677899998542211         244555543221        222223334446899998888888876


Q ss_pred             CCCCCCeEEEEE--CCCCCee-----EEEeC----CC-CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          335 GGGGDRCIKFWN--THTGACL-----NSVDT----GS-QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       335 ~g~~d~~i~lwd--~~~~~~~-----~~~~~----~~-~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      +  .+-.|.-||  ..+|...     ..+..    .+ ..-.++....|+..++  .++.++|..+|..+++.+.+++-.
T Consensus       177 s--ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va--~~ng~~V~~~dp~tGK~L~eiklP  252 (310)
T KOG4499|consen  177 S--LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA--TFNGGTVQKVDPTTGKILLEIKLP  252 (310)
T ss_pred             c--CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE--EecCcEEEEECCCCCcEEEEEEcC
Confidence            5  778887787  6666532     22222    11 1345566777887777  447899999999999999999988


Q ss_pred             CCcEEEEEEcC
Q 012679          403 TSRVLFMAQSP  413 (458)
Q Consensus       403 ~~~V~~l~~sp  413 (458)
                      +..|++++|--
T Consensus       253 t~qitsccFgG  263 (310)
T KOG4499|consen  253 TPQITSCCFGG  263 (310)
T ss_pred             CCceEEEEecC
Confidence            99999999964

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.44  E-value=0.076  Score=51.11  Aligned_cols=195  Identities=11%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             CeEEEEe-CCCcEEEEEccCCC---eeEEEEcc---cc----cceEeEEEcCCCCEEEEEE--C----CCcEEEEeCCCC
Q 012679          237 HILTTGG-MDGLIINNDVRVRD---HIVETYRG---HN----QEVCGLKWSASGQQLASGG--N----DNLLHIWDRSMA  299 (458)
Q Consensus       237 ~~l~sg~-~dg~i~vwd~~~~~---~~~~~~~~---h~----~~v~~l~~spd~~~l~sg~--~----dg~i~iwd~~~~  299 (458)
                      ++|+..+ ..+.|+|.|+.+..   .+.+.+..   +.    ..-..+..-|+|+.++++-  .    -|-+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            5666665 78899999998542   23344432   11    1223344567898887753  2    245777776654


Q ss_pred             CCCCcceeeeeecc---cccceeEEEecCCCCcEEEEeC------------------CCCCCeEEEEECCCCCeeEEEeC
Q 012679          300 SSNSVTQWLHRLEE---HTSAVKAIAWCPFQSNLLATGG------------------GGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       300 ~~~~~~~~~~~~~~---h~~~v~~l~~~p~~~~ll~s~~------------------g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      ..      ......   ...--..+-|.|. .++++|..                  +....++.+||+.+.+.+++++.
T Consensus       168 ~v------~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  168 EV------KGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             -E------EEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cc------cceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            33      222221   1223456778884 55555543                  22457899999999999999988


Q ss_pred             CCC---eEEEEE--cCCCCeEEEEecCCCCcEEEEeCCCce----eeEEEeCC-----------------CCcEEEEEEc
Q 012679          359 GSQ---VCALLW--NKNERELLSSHGFTQNQLTLWKYPSMV----KMAELSGH-----------------TSRVLFMAQS  412 (458)
Q Consensus       359 ~~~---v~~~~~--s~~~~~l~~~~g~~d~~i~iwd~~~~~----~~~~~~~h-----------------~~~V~~l~~s  412 (458)
                      +..   ...+.|  .|+..+=++.+.-.....++|.-..++    ++.++..-                 ..-|+.|..|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            743   334444  555666555444333334444434332    33333211                 2347999999


Q ss_pred             CCCCEEEEEe-CCCcEEEEecCCCCcc
Q 012679          413 PDGCTVASAA-ADETLRFWNVFGAPQV  438 (458)
Q Consensus       413 pdg~~l~s~s-~Dg~i~iW~~~~~~~~  438 (458)
                      .|.++|..++ .+|.|+.||+......
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             cCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            9999997666 5899999999876543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.43  E-value=0.18  Score=51.35  Aligned_cols=249  Identities=12%  Similarity=0.149  Sum_probs=137.2

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeEEe
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~~~  221 (458)
                      ..+.++.+..++.|+-.|..+|+..-...+..+... ..+.-+|  .+..++++..      +|.|.-+|.++|+.+..+
T Consensus       119 ~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            346788888999999999999997322222221110 1111122  2335566543      689999999999988776


Q ss_pred             cCCCcc------------------------------cEE-EEEeC--CCeEEEEeCC-----C-----------cEEEEE
Q 012679          222 RGGHRS------------------------------RVG-SLAWN--NHILTTGGMD-----G-----------LIINND  252 (458)
Q Consensus       222 ~~~~~~------------------------------~v~-~l~~~--~~~l~sg~~d-----g-----------~i~vwd  252 (458)
                      ......                              .+. .++++  ..++..+...     +           .|.-.|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            531111                              010 12333  2445554421     2           566677


Q ss_pred             ccCCCeeEEEEc--ccc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcc------eeeeeeccc
Q 012679          253 VRVRDHIVETYR--GHN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVT------QWLHRLEEH  314 (458)
Q Consensus       253 ~~~~~~~~~~~~--~h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~~~h  314 (458)
                      +++++.. -.++  .|.       ....-+....+|+   .++.+..+|.+++.|..+++.....      .+...+...
T Consensus       278 ~~TG~~~-W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~  356 (527)
T TIGR03075       278 PDTGKIK-WHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK  356 (527)
T ss_pred             cccCCEE-EeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence            7777642 2222  121       1111223334666   7789999999999999887652100      000000000


Q ss_pred             ------------------ccc-----------eeEEEecCCCCcEEEEeCC-----------------------------
Q 012679          315 ------------------TSA-----------VKAIAWCPFQSNLLATGGG-----------------------------  336 (458)
Q Consensus       315 ------------------~~~-----------v~~l~~~p~~~~ll~s~~g-----------------------------  336 (458)
                                        ...           -..++++|....+++-..-                             
T Consensus       357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~  436 (527)
T TIGR03075       357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP  436 (527)
T ss_pred             CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence                              000           0125566643333322110                             


Q ss_pred             -CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          337 -GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       337 -~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                       ..-+.|.-+|+.+|+.+.......+...-...-.+..++.  |..+|.++.+|..+++.+.+++-.
T Consensus       437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEeEEEeCC
Confidence             0125688899999998887765443222112224445555  557999999999999999888643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.08  Score=49.65  Aligned_cols=216  Identities=13%  Similarity=0.086  Sum_probs=126.0

Q ss_pred             EEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CC-CeEEEEeCCCcEEEEEccCCCeeEEEEc--
Q 012679          190 NWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NN-HILTTGGMDGLIINNDVRVRDHIVETYR--  264 (458)
Q Consensus       190 ~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~--  264 (458)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+.  +...+.++.. +. ..|+++ ..| +.+++.+.+.. +..+.  
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~--~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~-~t~~~~~  104 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP--SPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGK-ITLLAEP  104 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE--CCCCcccceeecCCCeEEEE-ccc-cEEEeccCCce-eEEeccc
Confidence            4666666 4444456678888888766432 222  3333444444 43 344443 333 44555543432 11111  


Q ss_pred             --c-cccceEeEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          265 --G-HNQEVCGLKWSASGQQLASGGN-----------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       265 --~-h~~~v~~l~~spd~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                        + .....+.+...|+|.+-++...           -|.|+.+|. .+..      ...+..+-..-+.|+|+|++..+
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~------~~l~~~~~~~~NGla~SpDg~tl  177 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV------VRLLDDDLTIPNGLAFSPDGKTL  177 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE------EEeecCcEEecCceEECCCCCEE
Confidence              1 1234566778888886665433           123444443 2222      33444445566789999999888


Q ss_pred             EEEeCCCCCCeEEEEECCC--CC---eeEEEe---CCCCeEEEEEcCCCCeEEEEecCCC-CcEEEEeCCCceeeEEEeC
Q 012679          331 LATGGGGGDRCIKFWNTHT--GA---CLNSVD---TGSQVCALLWNKNERELLSSHGFTQ-NQLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~--~~---~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d-~~i~iwd~~~~~~~~~~~~  401 (458)
                      +++-+  ..+.|.-|++..  +.   ....+.   ..+..-.++...+|.+.+++.  .+ +.|.+|+.. ++++..+.-
T Consensus       178 y~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~--~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         178 YVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV--WGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc--cCCceEEEECCC-CcEEEEEEC
Confidence            88765  678888887752  21   111111   234566788888888886532  33 489999988 999998887


Q ss_pred             CCCcEEEEEEc-CCCCEEEEEeC
Q 012679          402 HTSRVLFMAQS-PDGCTVASAAA  423 (458)
Q Consensus       402 h~~~V~~l~~s-pdg~~l~s~s~  423 (458)
                      ....+++++|- |+.+.|...+.
T Consensus       253 P~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         253 PVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCCccceEeCCCcCEEEEEec
Confidence            77788888885 45555554444

>PHA02713 hypothetical protein; Provisional

Probab=97.41  E-value=0.012  Score=60.28  Aligned_cols=222  Identities=13%  Similarity=0.059  Sum_probs=111.2

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEeCCCceee--EEecCCCcccEEEEE
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN------CQVQLWDSTANRQL--RTLRGGHRSRVGSLA  233 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d------g~v~iwd~~~~~~~--~~~~~~~~~~v~~l~  233 (458)
                      .+..||..++++..+..+...... .+++. -++...++|+.+      ..+..||..++.-.  ..+.. .........
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-~R~~~~~~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-NRCRFSLAV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-hhhceeEEE
Confidence            578899998887665555432221 12222 266777777753      34788898776532  22221 222344556


Q ss_pred             eCCCeEEEEeCCC-----cEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC------------------
Q 012679          234 WNNHILTTGGMDG-----LIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN------------------  289 (458)
Q Consensus       234 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg------------------  289 (458)
                      .++.+.+.||.++     .+..||..+..... ..+.........+.  -+|++.+.||.++                  
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence            6888889998764     47889987654311 11111111111222  2677888887653                  


Q ss_pred             -----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC----CCeEEEEECCC-CCeeEEEeCC
Q 012679          290 -----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG----DRCIKFWNTHT-GACLNSVDTG  359 (458)
Q Consensus       290 -----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~----d~~i~lwd~~~-~~~~~~~~~~  359 (458)
                           .+..||..+..-..    +..+....... +++..  ++.+.+.||.+.    ...+..||..+ .+....-...
T Consensus       428 ~~~~~~ve~YDP~td~W~~----v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~  500 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWET----LPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE  500 (557)
T ss_pred             ccccceEEEECCCCCeEee----cCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence                 46778877654321    11111111111 12222  356777765211    12467899887 4543222222


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceee
Q 012679          360 SQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKM  396 (458)
Q Consensus       360 ~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~  396 (458)
                      .+.......--+..|.+.+| .++  .+..||..+.+-.
T Consensus       501 ~~r~~~~~~~~~~~iyv~Gg-~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        501 SRLSALHTILHDNTIMMLHC-YESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             cccccceeEEECCEEEEEee-ecceeehhhcCccccccc
Confidence            22111111112334444434 445  5666776655433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.40  E-value=0.019  Score=58.89  Aligned_cols=231  Identities=17%  Similarity=0.207  Sum_probs=123.6

Q ss_pred             CCCCEEEEEecCC------eEEEEeCCCceeeEEecCC-CcccEEEEEeCCCeEEEEeCC-C-----cEEEEEccCCCee
Q 012679          193 PDGRHIAIGLNNC------QVQLWDSTANRQLRTLRGG-HRSRVGSLAWNNHILTTGGMD-G-----LIINNDVRVRDHI  259 (458)
Q Consensus       193 ~~g~~la~g~~dg------~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~~~~~l~sg~~d-g-----~i~vwd~~~~~~~  259 (458)
                      ..+..+++|+.++      .+..||..++......... ....+.....++.+.++|+.| |     .+..||.++.+..
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            3456677777663      6888998887543322221 223344444578899999999 3     5678888776631


Q ss_pred             EEEEcccccceEeEEE-cCCCCEEEEEECCCc-----EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          260 VETYRGHNQEVCGLKW-SASGQQLASGGNDNL-----LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~-spd~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                        ....-...-..+.. .-+|.+.|+||.||.     |-.||..+.+....    ..   ........+....++.+.++
T Consensus       363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v----a~---m~~~r~~~gv~~~~g~iYi~  433 (571)
T KOG4441|consen  363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV----AP---MLTRRSGHGVAVLGGKLYII  433 (571)
T ss_pred             --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc----CC---CCcceeeeEEEEECCEEEEE
Confidence              11111111111111 127888899999864     77788777654221    11   11122333333335778887


Q ss_pred             eCCCCC----CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC----CcEEEEeCCCce--eeEEEeCCC
Q 012679          334 GGGGGD----RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQLTLWKYPSMV--KMAELSGHT  403 (458)
Q Consensus       334 ~~g~~d----~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d----~~i~iwd~~~~~--~~~~~~~h~  403 (458)
                      ||.+..    ..+..||..+++....-.....-......--+..|++.+|+.+    ..|..||..+.+  .+..+....
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r  513 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR  513 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence            762222    3578899888775544333222111112223344555545432    236778876644  333333333


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCc-----EEEEecCC
Q 012679          404 SRVLFMAQSPDGCTVASAAADET-----LRFWNVFG  434 (458)
Q Consensus       404 ~~V~~l~~spdg~~l~s~s~Dg~-----i~iW~~~~  434 (458)
                      ..+-...+  ++...+.|+.||.     |..||-..
T Consensus       514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence            33333333  5777788888764     56665443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.36  E-value=0.17  Score=49.34  Aligned_cols=87  Identities=13%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcC----------------CCC
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNK----------------NER  372 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~----------------~~~  372 (458)
                      +......+.+++.+|+ ..++|+..  .=|.|.++|+.++..++.++.  +.++.-+....                ...
T Consensus       303 l~D~~R~~~~i~~sP~-~~laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  303 LPDSKREGESICLSPS-GRLAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             eccCCceEEEEEECCC-CCEEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            3344456789999997 55666654  668999999999988776653  22221111111                112


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      .+++.+.-.-|.|.||.++++..+..+.
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence            3444445568899999998888777664

>smart00320 WD40 WD40 repeats

Probab=97.34  E-value=0.00074  Score=40.57  Aligned_cols=36  Identities=42%  Similarity=0.827  Sum_probs=32.0

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd  211 (458)
                      ...+..|...|.++.|.+++.++++++.||.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.32  E-value=0.022  Score=43.97  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             eeEEEecC---CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679          318 VKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV  394 (458)
Q Consensus       318 v~~l~~~p---~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~  394 (458)
                      |.+|+++.   ++..-|++|+  .|..|++|+  ..+.+..+.....+++++-...+++.+   +..+|+|-+|+-  ..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs--~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y---~l~NGTVGvY~~--~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGS--DDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAY---ALANGTVGVYDR--SQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEec--CCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEE---EecCCEEEEEeC--cc
Confidence            45566544   5556777766  999999998  457888998999999999888866444   447899999875  33


Q ss_pred             eeEEEeCCCCcEEEEEEcC---CC-CEEEEEeCCCcEE
Q 012679          395 KMAELSGHTSRVLFMAQSP---DG-CTVASAAADETLR  428 (458)
Q Consensus       395 ~~~~~~~h~~~V~~l~~sp---dg-~~l~s~s~Dg~i~  428 (458)
                      .+...+. ...++++++..   || .-|++|-.+|.|-
T Consensus        73 RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3444442 33466666543   22 2688888888764

>PHA02713 hypothetical protein; Provisional

Probab=97.29  E-value=0.014  Score=60.01  Aligned_cols=179  Identities=13%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeE--EecCCCcccEEEEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLR--TLRGGHRSRVGSLA  233 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~--~~~~~~~~~v~~l~  233 (458)
                      ..+..||..+..+..+..+.........+.  -+|+..++|+.+|     .+..||..+++-..  .+.. .......+.
T Consensus       320 ~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~-~r~~~~~~~  396 (557)
T PHA02713        320 NKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI-ALSSYGMCV  396 (557)
T ss_pred             ceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-ccccccEEE
Confidence            357888988877654444432222222222  2677778888764     48899988764322  2222 122233455


Q ss_pred             eCCCeEEEEeCCC-----------------------cEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEECC-
Q 012679          234 WNNHILTTGGMDG-----------------------LIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGND-  288 (458)
Q Consensus       234 ~~~~~l~sg~~dg-----------------------~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d-  288 (458)
                      .++.+.+.|+.++                       .+..||..+.... +..+....... +++ .-++++.+.||.+ 
T Consensus       397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~  474 (557)
T PHA02713        397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKD  474 (557)
T ss_pred             ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCC
Confidence            6888888888653                       4777888766431 11111111111 122 2357777777754 


Q ss_pred             -----CcEEEEeCCC-CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCee
Q 012679          289 -----NLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACL  353 (458)
Q Consensus       289 -----g~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~  353 (458)
                           ..+..||..+ ..-..    +..+.........+++   ++.+.++||  .|+  .+..||..+.+-.
T Consensus       475 ~~~~~~~ve~Ydp~~~~~W~~----~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        475 EKNVKTCIFRYNTNTYNGWEL----ITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             CCccceeEEEecCCCCCCeeE----ccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCccccccc
Confidence                 2467888876 44311    2222222222222332   467888876  666  6777777766543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.0039  Score=65.16  Aligned_cols=97  Identities=25%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      -+++++..|.|-..|... .+.++..-..-.++|++++|+.+|..++.|-.+|.|.+||+.+++.++.+.. |..+...+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t~v  178 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVTGV  178 (1206)
T ss_pred             eEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-cCCccceE
Confidence            467777788888888654 2322333333468999999999999999999999999999999999888876 65555544


Q ss_pred             Ee----C-CCeEEEEeCCCcEEEEEc
Q 012679          233 AW----N-NHILTTGGMDGLIINNDV  253 (458)
Q Consensus       233 ~~----~-~~~l~sg~~dg~i~vwd~  253 (458)
                      -+    + +..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            33    3 456888888886  4543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.28  E-value=0.18  Score=48.13  Aligned_cols=237  Identities=15%  Similarity=0.160  Sum_probs=119.3

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee---eEEe---cCCCcccEEEEEeCC-----CeEEEEeCC--------
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ---LRTL---RGGHRSRVGSLAWNN-----HILTTGGMD--------  245 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~---~~~~---~~~~~~~v~~l~~~~-----~~l~sg~~d--------  245 (458)
                      ..+.|+|.|||++++ +...|.|.+++ ..+..   +..+   ..........+++++     ..|......        
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            368899999997665 56699999999 44433   2222   122455678899965     344433331        


Q ss_pred             -CcEEEEEccCC-------CeeEEEEcc---cccceEeEEEcCCCCEEEEEECCCc-------------EEEEeCCCCCC
Q 012679          246 -GLIINNDVRVR-------DHIVETYRG---HNQEVCGLKWSASGQQLASGGNDNL-------------LHIWDRSMASS  301 (458)
Q Consensus       246 -g~i~vwd~~~~-------~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~~dg~-------------i~iwd~~~~~~  301 (458)
                       ..|.-|.....       +.++..+..   .......|.|.|||.+.++.+..+.             |.-.+....-.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23444444333       112222222   2334567999999977776654332             22223221100


Q ss_pred             C--Cc------ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----------------------
Q 012679          302 N--SV------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----------------------  351 (458)
Q Consensus       302 ~--~~------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----------------------  351 (458)
                      .  ..      ...+. -.++. ....++|+|....++++-.| .|..=.|--+..|.                      
T Consensus       161 ~dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             TTSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            0  00      00000 11222 23579999975666665432 22222221122111                      


Q ss_pred             -------eeEEEeCCCCeEEEEEcCC-------CCeEEEEecCCCCcEEEEeCCCceeeE---EE-eCCCCcEEEEEEcC
Q 012679          352 -------CLNSVDTGSQVCALLWNKN-------ERELLSSHGFTQNQLTLWKYPSMVKMA---EL-SGHTSRVLFMAQSP  413 (458)
Q Consensus       352 -------~~~~~~~~~~v~~~~~s~~-------~~~l~~~~g~~d~~i~iwd~~~~~~~~---~~-~~h~~~V~~l~~sp  413 (458)
                             ++..+..+..+..+.|...       +.++++  ....+.|....+.....+.   .+ .....++..+++.|
T Consensus       238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p  315 (331)
T PF07995_consen  238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP  315 (331)
T ss_dssp             S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred             CCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence                   2233344555677777643       344555  3346678777776443322   22 23445899999999


Q ss_pred             CCCEEEEEeCCCcEE
Q 012679          414 DGCTVASAAADETLR  428 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~  428 (458)
                      ||.+.++...+|.|.
T Consensus       316 DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  316 DGALYVSDDSDGKIY  330 (331)
T ss_dssp             TSEEEEEE-TTTTEE
T ss_pred             CCeEEEEECCCCeEe
Confidence            999999888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.27  E-value=0.17  Score=47.48  Aligned_cols=209  Identities=15%  Similarity=0.149  Sum_probs=117.3

Q ss_pred             EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC----CCcccEEEE
Q 012679          157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSL  232 (458)
Q Consensus       157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l  232 (458)
                      --.++.|.-|+..+++.. .+..   .+.+.++..-..+..|+++. . -+.+++.+++..+..+..    ....+.+.+
T Consensus        43 DI~~~~i~r~~~~~g~~~-~~~~---p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~  116 (307)
T COG3386          43 DILGGRIHRLDPETGKKR-VFPS---PGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG  116 (307)
T ss_pred             eCCCCeEEEecCCcCceE-EEEC---CCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence            335789999998877642 2222   33345555554555555443 3 366777665555332221    111233333


Q ss_pred             Ee--CCCeEEEEeCC------------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCC
Q 012679          233 AW--NNHILTTGGMD------------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRS  297 (458)
Q Consensus       233 ~~--~~~~l~sg~~d------------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~  297 (458)
                      ..  +|.+. .++..            |.|+.+|.  ....++.+..+-..-++|+||||++.|..+.. .+.|.-|++.
T Consensus       117 ~v~pdG~~w-fgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         117 VVDPDGRIW-FGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             eEcCCCCEE-EeCCCccccCccccCCcceEEEEcC--CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            33  23333 33222            33444443  23335555566667789999999988877665 4788888876


Q ss_pred             C--CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEECCCCCeeEEEeCC-CCeEEEEEc-CCCC
Q 012679          298 M--ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNTHTGACLNSVDTG-SQVCALLWN-KNER  372 (458)
Q Consensus       298 ~--~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s-~~~~  372 (458)
                      .  ...... .....+....+..-.++...++.... ++.  .+ +.|..|+.. |+.+..+..+ ..+++++|- ++.+
T Consensus       194 ~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~-~a~--~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~  268 (307)
T COG3386         194 PATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWV-AAV--WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN  268 (307)
T ss_pred             cccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEE-ecc--cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence            3  111111 11222223445556677776544443 332  33 389999998 9999999887 678888875 3456


Q ss_pred             eEEEEec
Q 012679          373 ELLSSHG  379 (458)
Q Consensus       373 ~l~~~~g  379 (458)
                      .|++++.
T Consensus       269 ~L~iTs~  275 (307)
T COG3386         269 TLYITSA  275 (307)
T ss_pred             EEEEEec
Confidence            6666543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.25  E-value=0.22  Score=48.59  Aligned_cols=279  Identities=12%  Similarity=0.170  Sum_probs=158.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCee---eEEEecCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEeCCCc--e-----
Q 012679          152 SNVLAIALGSTVYLWDASDGTTS---ELVTVDDENGPVTSVNWAP-----DGRHIAIGLNNCQVQLWDSTAN--R-----  216 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~---~~~~~~~h~~~V~~v~~s~-----~g~~la~g~~dg~v~iwd~~~~--~-----  216 (458)
                      +.+++|+..|.++||+...+...   .+.+.+ -..+|..|+.-.     +...||+ -.-..+.||.+...  .     
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            56888999999999998654422   123322 357888887643     3345665 45558888877211  1     


Q ss_pred             --eeEEecCCCcccE-----EEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679          217 --QLRTLRGGHRSRV-----GSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       217 --~~~~~~~~~~~~v-----~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                        .+..+.. |.-.-     .+..|.    .+.|.+=+.||.+.+|+-+.-. ....+.+ .--...+.|.+....|+++
T Consensus       116 ~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~  192 (418)
T PF14727_consen  116 QYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTA  192 (418)
T ss_pred             EEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence              1222222 32221     222232    3688888999999999875422 1222322 2223457788888899999


Q ss_pred             ECCCcEEEEeCCCCCC-------------------CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679          286 GNDNLLHIWDRSMASS-------------------NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      +.+..+..|.......                   .....|...+...--.|..+.++.....+++.|    .+.+.+.+
T Consensus       193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~  268 (418)
T PF14727_consen  193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG----ERSLFCLK  268 (418)
T ss_pred             cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe----cceEEEEc
Confidence            9988998887532111                   011122222222222344444444445666664    56777777


Q ss_pred             CCCCCeeEEEeCCCCeEEEE-EcC----CCC---eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE---cCCC
Q 012679          347 THTGACLNSVDTGSQVCALL-WNK----NER---ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ---SPDG  415 (458)
Q Consensus       347 ~~~~~~~~~~~~~~~v~~~~-~s~----~~~---~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~---spdg  415 (458)
                      . +|.............+++ |..    .+.   .+++  +..++++.||.-.+..--+.+  ...+| ++..   ..-.
T Consensus       269 ~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~~L~WsA~l--~~~PV-al~v~~~~~~~  342 (418)
T PF14727_consen  269 D-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDTTLVWSAQL--PHVPV-ALSVANFNGLK  342 (418)
T ss_pred             C-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCCeEEEecCC--CCCCE-EEEecccCCCC
Confidence            6 466665555544433322 221    222   2444  447899999875544333333  22332 3333   2334


Q ss_pred             CEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679          416 CTVASAAADETLRFWNVFGAPQVISKSAPK  445 (458)
Q Consensus       416 ~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~  445 (458)
                      ..|++-+.+|.|.+--+-+.+.....+...
T Consensus       343 G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~  372 (418)
T PF14727_consen  343 GLIVSLSDEGQLSVSYLGTDPSLFQVPPLE  372 (418)
T ss_pred             ceEEEEcCCCcEEEEEeCCCCccccCCCcc
Confidence            578889999999999998887766654444

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.013  Score=56.90  Aligned_cols=137  Identities=17%  Similarity=0.238  Sum_probs=95.1

Q ss_pred             EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEeCCCcee--eEEecC---C
Q 012679          157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-------HIAIGLNNCQVQLWDSTANRQ--LRTLRG---G  224 (458)
Q Consensus       157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-------~la~g~~dg~v~iwd~~~~~~--~~~~~~---~  224 (458)
                      ++....|+-.|++.|++..-..+  |.+ |+-+.+.|+.+       .-++|-.+..|.-||.+-...  +.....   .
T Consensus       352 ~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  352 GGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             CCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            34446788999999998444444  444 88888888653       235678888999999864322  211111   1


Q ss_pred             CcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          225 HRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       225 ~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      ......|++- ...++++|+.+|.|++||- .+......+++...+|..+..+.||++|+..+ +..+.+-+..-
T Consensus       429 ~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~  501 (644)
T KOG2395|consen  429 TKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI  501 (644)
T ss_pred             cccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence            2234556665 3579999999999999997 44444567888899999999999999887655 45677666543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.19  Score=49.70  Aligned_cols=193  Identities=9%  Similarity=0.055  Sum_probs=106.0

Q ss_pred             CCCeEEEE-eCCC----cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-----------cEEEEeCCC
Q 012679          235 NNHILTTG-GMDG----LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN-----------LLHIWDRSM  298 (458)
Q Consensus       235 ~~~~l~sg-~~dg----~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-----------~i~iwd~~~  298 (458)
                      ++++++.+ +..|    .|+++|+.++..+...+...  ....+.|.+|++.|+....+.           .|+.|.+.+
T Consensus       134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt  211 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT  211 (414)
T ss_dssp             TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred             CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence            56666654 4444    59999999886543333321  122399999999887766443           377777766


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEECCCC-----CeeEEEeCCCCeEEEEEcCCCC
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNTHTG-----ACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      ....  ...+..-..+......+..++++..+++......+ ..+.+.|+..+     ...........+....-+..+.
T Consensus       212 ~~~~--d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~  289 (414)
T PF02897_consen  212 PQSE--DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDR  289 (414)
T ss_dssp             -GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTE
T ss_pred             ChHh--CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCE
Confidence            5431  11222222222225678899999988876543344 67899999875     3333333333343333233444


Q ss_pred             eEEEE-ecCCCCcEEEEeCCCcee---eEEEeCCCCc--EEEEEEcCCCCEEE-EEeCCC--cEEEEecC
Q 012679          373 ELLSS-HGFTQNQLTLWKYPSMVK---MAELSGHTSR--VLFMAQSPDGCTVA-SAAADE--TLRFWNVF  433 (458)
Q Consensus       373 ~l~~~-~g~~d~~i~iwd~~~~~~---~~~~~~h~~~--V~~l~~spdg~~l~-s~s~Dg--~i~iW~~~  433 (458)
                      +++.+ .+...+.|...++.....   ...+..|...  +..+..  .+.+|+ ..-.++  .|+++++.
T Consensus       290 ~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  290 LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            44433 233456777778776552   3355556653  444544  344454 444444  57888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.11  E-value=0.086  Score=54.24  Aligned_cols=180  Identities=12%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe------cCC--eEEEEeCCCceeeEEecCC
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL------NNC--QVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~------~dg--~v~iwd~~~~~~~~~~~~~  224 (458)
                      .++++. +|.+.-.+  .+...++-...+....+.+.+++|+|+.+|...      .|+  .|.+++.. +.. ..+..+
T Consensus       322 ~~~~v~-~G~l~~~~--~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g  396 (591)
T PRK13616        322 GLHALV-DGSLVSVD--GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG  396 (591)
T ss_pred             cceEEE-CCeEEEec--CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC
Confidence            344444 66665543  333333333323334688999999999887765      243  45555542 222 333321


Q ss_pred             CcccEEEEEeC--CCeEEEEeC------------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCc
Q 012679          225 HRSRVGSLAWN--NHILTTGGM------------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL  290 (458)
Q Consensus       225 ~~~~v~~l~~~--~~~l~sg~~------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~  290 (458)
                      .  ....-.|+  +..|++...            .+.+.+.++..+.. ..   ...+.|..+.|||||..+|... ++.
T Consensus       397 ~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~  469 (591)
T PRK13616        397 H--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGK  469 (591)
T ss_pred             C--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCE
Confidence            2  36666774  455555532            23444444443321 11   3356799999999999998766 477


Q ss_pred             EEE---EeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          291 LHI---WDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       291 i~i---wd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      |++   -....+.. .... ...+. .-...+..+.|.+++. |++... ..+..+...++.
T Consensus       470 v~Va~Vvr~~~G~~-~l~~-~~~l~~~l~~~~~~l~W~~~~~-L~V~~~-~~~~~v~~v~vD  527 (591)
T PRK13616        470 VYLAVVEQTEDGQY-ALTN-PREVGPGLGDTAVSLDWRTGDS-LVVGRS-DPEHPVWYVNLD  527 (591)
T ss_pred             EEEEEEEeCCCCce-eecc-cEEeecccCCccccceEecCCE-EEEEec-CCCCceEEEecC
Confidence            776   33233321 1111 12222 2233467899999766 443322 134445444444

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.10  E-value=0.029  Score=57.61  Aligned_cols=151  Identities=13%  Similarity=0.107  Sum_probs=91.3

Q ss_pred             cceEeEEEcCCCCEEEEEE------CCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC---
Q 012679          268 QEVCGLKWSASGQQLASGG------NDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG---  336 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g---  336 (458)
                      ..+...+++|||+.+|..-      .|.  .|.+++.  +...     .....+  .....-.|+|++..+.+...+   
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~-----~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~  420 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVA-----VQVLEG--HSLTRPSWSLDADAVWVVVDGNTV  420 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcc-----eeeecC--CCCCCceECCCCCceEEEecCcce
Confidence            4678899999999987765      244  4555554  2221     111222  237788999997766655321   


Q ss_pred             ------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE---EeCCCcee-e---EEEe-CC
Q 012679          337 ------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL---WKYPSMVK-M---AELS-GH  402 (458)
Q Consensus       337 ------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i---wd~~~~~~-~---~~~~-~h  402 (458)
                            ...+.+.+.++..+....  .....|..+.|+|||..++...   ++.|.+   -....++. +   ..+. +-
T Consensus       421 ~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l  495 (591)
T PRK13616        421 VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGL  495 (591)
T ss_pred             EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeeccc
Confidence                  122344444555544433  3456799999999999999875   467776   44444541 1   1122 22


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ...+..+.|..++.++ .+..++.-.+|.+.
T Consensus       496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             CCccccceEecCCEEE-EEecCCCCceEEEe
Confidence            3446889999999855 55555555566654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.76  E-value=0.41  Score=43.33  Aligned_cols=234  Identities=15%  Similarity=0.136  Sum_probs=137.4

Q ss_pred             EEEEEEcCC-CCEEEEEecCCe-EEEEeCCCceeeEEecC---CCcccEEEEEeCCCeEEEEeCC-----CcEEEEEccC
Q 012679          186 VTSVNWAPD-GRHIAIGLNNCQ-VQLWDSTANRQLRTLRG---GHRSRVGSLAWNNHILTTGGMD-----GLIINNDVRV  255 (458)
Q Consensus       186 V~~v~~s~~-g~~la~g~~dg~-v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~  255 (458)
                      -..|+++|. ..-++.+-.-|+ ..++|....+...++..   .|--.-.+.+-+|.+|...-.|     |.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            346788884 445666666665 57889888776666543   1222223444467777776443     7899999997


Q ss_pred             CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE--------------------eCCCCCCCCcceeeeeec--c
Q 012679          256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW--------------------DRSMASSNSVTQWLHRLE--E  313 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw--------------------d~~~~~~~~~~~~~~~~~--~  313 (458)
                      .-..+..+..|.-.-..+.|.+||+.++.+..  -|..-                    |..++....    .+++.  .
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~lie----kh~Lp~~l  223 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE----KHTLPASL  223 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhh----hccCchhh
Confidence            66667777888888888999999999988643  33333                    222222100    11111  2


Q ss_pred             cccceeEEEecCCCCcEEEEeC-C-CCCCeEEEEECCCCCeeEEEeCC--------CCeEEEEEcCCCCeEEEEecCCCC
Q 012679          314 HTSAVKAIAWCPFQSNLLATGG-G-GGDRCIKFWNTHTGACLNSVDTG--------SQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       314 h~~~v~~l~~~p~~~~ll~s~~-g-~~d~~i~lwd~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                      +.-.|..++..+++.-++.+-- | ..|.--.+=....++.+.-++..        ..|-+++.+.+...++.++ -..+
T Consensus       224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS-P~GN  302 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS-PRGN  302 (366)
T ss_pred             hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec-CCCC
Confidence            3455777777775443333210 0 01111222223345555544432        3367788887777776653 3567


Q ss_pred             cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      ...+||..++..+..-.-  ..+..++--  ..-++..+.+|.+.++
T Consensus       303 ~~vi~da~tG~vv~~a~l--~daaGva~~--~~gf~vssg~G~~~~~  345 (366)
T COG3490         303 RAVIWDAATGAVVSEAAL--PDAAGVAAA--KGGFAVSSGQGRIIFY  345 (366)
T ss_pred             eEEEEEcCCCcEEecccc--cccccceec--cCceEEecCCceEEec
Confidence            788999999988764421  112233333  3335666788888887

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.019  Score=55.85  Aligned_cols=137  Identities=13%  Similarity=0.107  Sum_probs=93.4

Q ss_pred             EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---------CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccc-
Q 012679          199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---------NHILTTGGMDGLIINNDVRVRDH-IVETYRGHN-  267 (458)
Q Consensus       199 a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~-  267 (458)
                      ..+.....++-.|++.|+.+..... +.. |.-+.+.         ...-+.|-.+..|.-||++.... .+...++|. 
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            3455555788889999999998886 444 4444442         23345677788899999986654 222233332 


Q ss_pred             ---cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679          268 ---QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF  344 (458)
Q Consensus       268 ---~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l  344 (458)
                         ....|.+-..+ .++|+||.+|.|++||--....      ...+.+-..+|+.+..+.+|..+|+++    +..+.+
T Consensus       428 ~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~A------KTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlL  496 (644)
T KOG2395|consen  428 STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRA------KTALPGLGDAIKHVDVTADGKWILATC----KTYLLL  496 (644)
T ss_pred             ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhh------hhcccccCCceeeEEeeccCcEEEEec----ccEEEE
Confidence               23444444444 4899999999999999633222      334566788999999999999999985    677777


Q ss_pred             EECC
Q 012679          345 WNTH  348 (458)
Q Consensus       345 wd~~  348 (458)
                      .++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            7754

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.73  E-value=0.084  Score=52.31  Aligned_cols=152  Identities=16%  Similarity=0.292  Sum_probs=88.9

Q ss_pred             ccEEEEEe-CCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC----CCEEEEEECCCcEEEEeCCC
Q 012679          227 SRVGSLAW-NNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS----GQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       227 ~~v~~l~~-~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd----~~~l~sg~~dg~i~iwd~~~  298 (458)
                      .++..++| ||+.++-..   .+|.+++=|-        ...|.-..|+++.|.|-    ...|++.-....|.||.+..
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            57889999 676544332   2344333222        11233456999999984    33455556678999999864


Q ss_pred             CCCCCcceeeeeeccc-cc----ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEeCCCCeEEEEEcCCC
Q 012679          299 ASSNSVTQWLHRLEEH-TS----AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVCALLWNKNE  371 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h-~~----~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~~~~v~~~~~s~~~  371 (458)
                      ..... .+++.....+ ..    --..+.|+|. ..+|++-.  ....-.+++++..  .....++..+-|.+.+|.+||
T Consensus        92 s~~e~-~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT--~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   92 STTER-NKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT--ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             Ccccc-ccceeeeeeeccCCcccCCCcccccCC-CceEEEEe--cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            32211 1112221111 11    1246789996 44444432  2323345555443  344556777889999999999


Q ss_pred             CeEEEEecCCCCcEEEEeCC
Q 012679          372 RELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~  391 (458)
                      ..|+++.|. .=.-+|||-.
T Consensus       168 ~RLVVAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  168 QRLVVAVGS-SLHSYIWDSA  186 (671)
T ss_pred             CEEEEEeCC-eEEEEEecCc
Confidence            999998773 3456778753

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.70  E-value=0.0061  Score=39.27  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ...|.+++|+|...+||.|+.+|.|.||.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.70  E-value=0.61  Score=44.63  Aligned_cols=225  Identities=14%  Similarity=0.152  Sum_probs=109.3

Q ss_pred             EEcCCCCEEEEEec-CC--eEEEEeCCCceeeEEecCCCccc-EEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcc
Q 012679          190 NWAPDGRHIAIGLN-NC--QVQLWDSTANRQLRTLRGGHRSR-VGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG  265 (458)
Q Consensus       190 ~~s~~g~~la~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~-v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  265 (458)
                      +|.+||+.|+.++. +|  .+.+.|+.+++..+.-.+..... -.+++-..+.++-......|.-.|+++.+. ...+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence            56788987766654 44  67777999988776555422222 234444556665555556788888887664 233333


Q ss_pred             cccceEeEEE--cCCCCEEEEEEC----------------------CCcEEEEeCCCCCCCCcceeeeeecccccceeEE
Q 012679          266 HNQEVCGLKW--SASGQQLASGGN----------------------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI  321 (458)
Q Consensus       266 h~~~v~~l~~--spd~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  321 (458)
                      ....+-...|  +.|+..++-.-.                      ...|.--|+.+++.       ..+..-...+..+
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~-------~~v~~~~~wlgH~  193 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER-------KVVFEDTDWLGHV  193 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E-------EEEEEESS-EEEE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce-------eEEEecCccccCc
Confidence            3444443445  345665543211                      12344445555432       2333345567788


Q ss_pred             EecCCCCcEEEEeC-CCCCCe-EEEEECCC-CCeeEEEeC---CCCeEEEEEcCCCCeEEEEec---CCCCcEEEEeCCC
Q 012679          322 AWCPFQSNLLATGG-GGGDRC-IKFWNTHT-GACLNSVDT---GSQVCALLWNKNERELLSSHG---FTQNQLTLWKYPS  392 (458)
Q Consensus       322 ~~~p~~~~ll~s~~-g~~d~~-i~lwd~~~-~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g---~~d~~i~iwd~~~  392 (458)
                      .|+|..+.+++-|. |..+.. -|+|-+++ |.....+..   ...+..=-|.++|..|.--..   ..+..|.-++..+
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            99998888877653 333432 36675543 332232221   223555679999988875432   2334577788888


Q ss_pred             ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679          393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      ++......  ......+-.++||+++|-=+.|
T Consensus       274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             --EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred             CCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence            76543222  2245577778999988755555

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.024  Score=59.90  Aligned_cols=148  Identities=16%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             CCEEEEEEcCCCCEEEEEecC--CeEEEEeCCCceeeE-----EecC-----CCcccEEEEEeCC---CeEEEEeCCCcE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNN--CQVQLWDSTANRQLR-----TLRG-----GHRSRVGSLAWNN---HILTTGGMDGLI  248 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~d--g~v~iwd~~~~~~~~-----~~~~-----~~~~~v~~l~~~~---~~l~sg~~dg~i  248 (458)
                      -++..+...+|+...++....  -.|..||+++-..-.     -+..     ....-..++.|++   ...+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345666667787766554333  378899986543211     1110     1234456788875   456677788888


Q ss_pred             EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .+..+......+..+ .....+++++|+|.|++++.|-+.|++.-|...........  ..... ....|.+|+|-....
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip--~Pp~~-e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIP--EPPVE-ENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeeccc--CCCcC-CCcceeEEEEeccee
Confidence            887765433322332 23567899999999999999999999998875543211100  00111 157899999988666


Q ss_pred             cEEEEeC
Q 012679          329 NLLATGG  335 (458)
Q Consensus       329 ~ll~s~~  335 (458)
                      .+++-+.
T Consensus       257 flvvy~n  263 (1405)
T KOG3630|consen  257 FLVVYGN  263 (1405)
T ss_pred             EEEEecc
Confidence            6655543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.69  E-value=0.004  Score=53.99  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             CCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC
Q 012679          125 IPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN  204 (458)
Q Consensus       125 i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d  204 (458)
                      |...|..-+.+.++.++.+        ..+.+-+.++.|.-+++...+...... ..|...-.-+   .-+..+++|+.+
T Consensus        12 ~dk~~~~d~i~~~~t~~~~--------~~l~~~sa~~~v~~~~~~k~k~s~rse-~~~~e~~~v~---~~~~~~~vG~~d   79 (238)
T KOG2444|consen   12 IDKHPSTDLIAAGLTDGHL--------HLLRATSADGLVRERKVRKHKESCRSE-RFIDEGQRVV---TASAKLMVGTSD   79 (238)
T ss_pred             eeccchhhhhhhcchhhhh--------hhhccccCCcccccchhhhhhhhhhhh-hhhhcceeec---ccCceEEeeccc
Confidence            3334444444445554433        445666777777777665433211111 1111111112   235579999999


Q ss_pred             CeEEEEeCCCceeeEEecCCCcccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc-cceEeEEEcCCCC
Q 012679          205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHN-QEVCGLKWSASGQ  280 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~l~~spd~~  280 (458)
                      |.|.+|..............-...|-++-.   ++.+..+++.+|.|+.|++.-... +.....|. .++..+..+..++
T Consensus        80 g~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~  158 (238)
T KOG2444|consen   80 GAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDE  158 (238)
T ss_pred             ceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCc
Confidence            999999876222211111112233333333   346889999999999999875543 44555565 4555555555666


Q ss_pred             EEEEE--ECCCcEEEEeCCCC
Q 012679          281 QLASG--GNDNLLHIWDRSMA  299 (458)
Q Consensus       281 ~l~sg--~~dg~i~iwd~~~~  299 (458)
                      .++++  |.|..++.|++...
T Consensus       159 ~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  159 FLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eEEeeccccchhhhhcchhhh
Confidence            66666  66677777776543

>PHA03098 kelch-like protein; Provisional

Probab=96.69  E-value=0.12  Score=53.02  Aligned_cols=179  Identities=13%  Similarity=0.140  Sum_probs=90.4

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCceeeE--EecCCCcccEEEEEe
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANRQLR--TLRGGHRSRVGSLAW  234 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~  234 (458)
                      .++.||..+.++..+..+.........+.+  ++...+.|+.+     ..+..||..+++-..  .+.. ..........
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~  388 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNV  388 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEE
Confidence            688899888887555444322222233332  67777888765     357788887665322  1221 1112233445


Q ss_pred             CCCeEEEEeCC------CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC--------cEEEEeCCCC
Q 012679          235 NNHILTTGGMD------GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN--------LLHIWDRSMA  299 (458)
Q Consensus       235 ~~~~l~sg~~d------g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg--------~i~iwd~~~~  299 (458)
                      ++.+.+.|+.+      ..+..||+.+..... ..+.........+  ..++..++.||.++        .+.+||..+.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            77888888742      357888987654211 1111111111112  23566777776432        3888888766


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCe
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGAC  352 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~  352 (458)
                      +-...    ..+.........+.+   ++.+++.||...   .+.+.+||..+.+-
T Consensus       467 ~W~~~----~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        467 KWTEL----SSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             ceeeC----CCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            53211    111111111111222   456666664211   24677788776543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.0063  Score=63.70  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=76.5

Q ss_pred             CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679          225 HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV  304 (458)
Q Consensus       225 ~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~  304 (458)
                      ....+.+.+.-+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||......   
T Consensus        88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~---  164 (1206)
T KOG2079|consen   88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI---  164 (1206)
T ss_pred             CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc---
Confidence            33455555666678899999999999998754221122223467899999999999999999999999999988776   


Q ss_pred             ceeeeeecccccceeEEE---ecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          305 TQWLHRLEEHTSAVKAIA---WCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~---~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                         ++.+..|..++.++-   +..++. .+.++.  ..|.  +|.+
T Consensus       165 ---l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l  202 (1206)
T KOG2079|consen  165 ---LKVITEHGAPVTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL  202 (1206)
T ss_pred             ---eeeeeecCCccceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence               666666666555443   334333 444432  3333  6654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.56  E-value=0.57  Score=42.45  Aligned_cols=199  Identities=12%  Similarity=0.087  Sum_probs=117.7

Q ss_pred             ceeeeCCCCCCccccceeec-cCCCeEEEE-cC--CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC
Q 012679          130 ERTLDAPDLVDDYYLNLLDW-GSSNVLAIA-LG--STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC  205 (458)
Q Consensus       130 ~~~l~~~~~~~d~~~~~~~~-~~~~~la~~-~d--~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg  205 (458)
                      .+++..-......+..-+.+ +.+.++-++ .-  ..|+.+|+.+|+......++.. ----.++.. +++.....-.++
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~-~d~l~qLTWk~~  110 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITIL-GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEE-TTEEEEEESSSS
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEE-CCEEEEEEecCC
Confidence            34555433344456667777 444443333 32  3899999999998666666532 122233333 344555566788


Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc--cc---ccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR--GH---NQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~h---~~~v~~l~~spd~~  280 (458)
                      ...+||..+.+.+.++.  ....=..++.++..|+.......|+++|..+-.. ...+.  ..   -..++-+.|- +|.
T Consensus       111 ~~f~yd~~tl~~~~~~~--y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G~  186 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFP--YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NGK  186 (264)
T ss_dssp             EEEEEETTTTEEEEEEE---SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TTE
T ss_pred             eEEEEccccceEEEEEe--cCCcceEEEcCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cCE
Confidence            99999999999999887  5567788889998888888889999999876543 22222  11   1245567775 666


Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCccee---eeee------cccccceeEEEecCCCCcEEEEe
Q 012679          281 QLASGGNDNLLHIWDRSMASSNSVTQW---LHRL------EEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~------~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      ..|=.=....|...|..++........   ....      .....-.+.|||.|....++++|
T Consensus       187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            666555566777778777765211000   0000      01134578999999999999987

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.53  E-value=0.62  Score=42.57  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=85.3

Q ss_pred             CEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEE-ccCCCeeE
Q 012679          185 PVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINND-VRVRDHIV  260 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd-~~~~~~~~  260 (458)
                      .+.+.+++++|+.+|... .++.-.||-...+.......  ....+..-+|+  +...+....+....++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            689999999999887665 23333333333444333332  12256666774  45555555555555553 22222211


Q ss_pred             EEEc--ccccceEeEEEcCCCCEEEEEE---CCCcEEEEeCCCCCCC---CcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          261 ETYR--GHNQEVCGLKWSASGQQLASGG---NDNLLHIWDRSMASSN---SVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       261 ~~~~--~h~~~v~~l~~spd~~~l~sg~---~dg~i~iwd~~~~~~~---~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      ....  .-...|..+.+||||..+|...   .++.|.+=-+......   ....+..........+..++|.+++..+++
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            1121  1122899999999999987765   3577776654322221   111122222234568899999997554444


Q ss_pred             EeCCCCCCeEEE
Q 012679          333 TGGGGGDRCIKF  344 (458)
Q Consensus       333 s~~g~~d~~i~l  344 (458)
                      ...  .+..+..
T Consensus       183 ~~~--~~~~~~~  192 (253)
T PF10647_consen  183 GRS--AGGPVVR  192 (253)
T ss_pred             eCC--CCCceeE
Confidence            332  4443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.53  E-value=0.011  Score=38.01  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      ...|..++|+|...+||.++.||.|.++++ +.+.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            456999999999999999999999999999 44443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.64  Score=42.32  Aligned_cols=150  Identities=15%  Similarity=0.010  Sum_probs=97.1

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecC
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRG  223 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~  223 (458)
                      +.++.+....+-.+.-++|.|+.+.....+..+-...+.-.++..  .|++..++..|.-+.+.|+.+..   ....+..
T Consensus        92 v~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~  169 (370)
T COG5276          92 VRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL  169 (370)
T ss_pred             eEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence            445556667777778899999987664333333222344455555  58888888866667888886543   3333332


Q ss_pred             CCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       224 ~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                       .......++.+|++-..+..|+-+.+-|+.....++..-. .....+.++..+++-.+++...  --+.+-|....+.
T Consensus       170 -~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ss  245 (370)
T COG5276         170 -PGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSS  245 (370)
T ss_pred             -CCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCC
Confidence             3444467788899999999999999999987664332211 1223677777777666665543  3477777776654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.49  E-value=0.95  Score=48.11  Aligned_cols=227  Identities=12%  Similarity=0.080  Sum_probs=117.1

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC--C------EEEEEEc----------------CCCCEEEEEecCCe
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG--P------VTSVNWA----------------PDGRHIAIGLNNCQ  206 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~--~------V~~v~~s----------------~~g~~la~g~~dg~  206 (458)
                      .+.++.++.++.|+-.|..+|+.  +.++.....  .      ...+++.                ..+..+++++.||.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~--lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE--KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            35677777789999999999987  444332111  0      1122221                13458889999999


Q ss_pred             EEEEeCCCceeeEEecCCCcccEE----------------E-EEeCCCeEEEEeC----------CCcEEEEEccCCCee
Q 012679          207 VQLWDSTANRQLRTLRGGHRSRVG----------------S-LAWNNHILTTGGM----------DGLIINNDVRVRDHI  259 (458)
Q Consensus       207 v~iwd~~~~~~~~~~~~~~~~~v~----------------~-l~~~~~~l~sg~~----------dg~i~vwd~~~~~~~  259 (458)
                      |.-.|.++|+.+..+..  ...|.                + -...+..++.|+.          +|.|+-+|.++++..
T Consensus       272 LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       272 LIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            99999999999877642  11110                0 0112456666643          688999999998865


Q ss_pred             EEEEcccccceEeEEEcCCCCEEEEEECCC-cEEEEeCCCCCCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCC
Q 012679          260 VETYRGHNQEVCGLKWSASGQQLASGGNDN-LLHIWDRSMASSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       260 ~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~  337 (458)
                      -....+.... ...  -+.+.....++.+. ...-+|.+.+..       ..-.+...+ ...-.-.| +.++       
T Consensus       350 W~~~~g~p~~-~~~--~~~g~~~~~gg~n~W~~~s~D~~~glv-------y~ptGn~~pd~~g~~r~~-~~n~-------  411 (764)
T TIGR03074       350 WAWDPGNPDP-TAP--PAPGETYTRNTPNSWSVASYDEKLGLV-------YLPMGNQTPDQWGGDRTP-ADEK-------  411 (764)
T ss_pred             eEEecCCCCc-ccC--CCCCCEeccCCCCccCceEEcCCCCeE-------EEeCCCccccccCCcccc-Cccc-------
Confidence            4433222111 100  01233222222111 222233222211       000010000 00000001 0111       


Q ss_pred             CCCeEEEEECCCCCeeEEEeC-CC---------CeEEEEEcC-CCC-eEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          338 GDRCIKFWNTHTGACLNSVDT-GS---------QVCALLWNK-NER-ELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~-~~---------~v~~~~~s~-~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      ..+.|.-.|.+||+....++. +.         +..-+.+.. +++ .=++..+..+|.+.++|-.+++.+...
T Consensus       412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            345677788888888776654 22         222222333 453 112333678999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.32  E-value=0.0059  Score=52.97  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=66.3

Q ss_pred             EEEEeCCCCCCeEEEEECCCC-CeeEEEeCC-CCeE-EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-Cc
Q 012679          330 LLATGGGGGDRCIKFWNTHTG-ACLNSVDTG-SQVC-ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SR  405 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~-~~~~~~~~~-~~v~-~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~  405 (458)
                      -+++|+  .+|.|++|+..-. .....+... .++- .+.--.++.+..+  +..+|.|+.|+..-.+.+.....|. .+
T Consensus        72 ~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   72 KLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             eEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEE--eccCCceeeeccccCceeeeeccccCCC
Confidence            344444  8999999987621 111111111 1222 2222222333444  6689999999999988888887787 66


Q ss_pred             EEEEEEcCCCCEEEEE--eCCCcEEEEecCCC
Q 012679          406 VLFMAQSPDGCTVASA--AADETLRFWNVFGA  435 (458)
Q Consensus       406 V~~l~~spdg~~l~s~--s~Dg~i~iW~~~~~  435 (458)
                      +..+..+..+++|+.+  |.|..+++|++..-
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            7777777777888888  88888999988643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.32  E-value=0.8  Score=41.51  Aligned_cols=182  Identities=12%  Similarity=0.129  Sum_probs=112.8

Q ss_pred             CEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      ....+.|..+|.++-+.+.-|  .|+.+|+.+++.+....-...----.++. ++.+..-.-.++...+||..+-+. +.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~-~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK-IG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE-EE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE-EE
Confidence            345677777888777777666  79999999999877665322222223333 445555566788999999987654 44


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc---cceeEEEecCCCCcEEEEeCCCC
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT---SAVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      .+. ..++=.+++  .|++.|+.......|+++|..+......   + ......   ..++.+.|-.  +.+.|-.=  .
T Consensus       125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~---i-~V~~~g~pv~~LNELE~i~--G~IyANVW--~  193 (264)
T PF05096_consen  125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT---I-QVTDNGRPVSNLNELEYIN--GKIYANVW--Q  193 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE---E-E-EETTEE---EEEEEEET--TEEEEEET--T
T ss_pred             EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE---E-EEEECCEECCCcEeEEEEc--CEEEEEeC--C
Confidence            443 234566676  4677777777778999999876654211   1 111122   2355566653  55666543  5


Q ss_pred             CCeEEEEECCCCCeeEEEeC----------------CCCeEEEEEcCCCCeEEEEe
Q 012679          339 DRCIKFWNTHTGACLNSVDT----------------GSQVCALLWNKNERELLSSH  378 (458)
Q Consensus       339 d~~i~lwd~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~  378 (458)
                      ...|...|..+|+.+..++.                ..-.+.++|+|....++++.
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            67888899999998887742                12378999999998888863

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=96.31  E-value=1.9  Score=45.67  Aligned_cols=240  Identities=9%  Similarity=0.046  Sum_probs=118.3

Q ss_pred             CEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-C-----CcEEEE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-D-----GLIINN  251 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-d-----g~i~vw  251 (458)
                      .+..+.|+|||++|+.+...+     .|++.|+.+++.+..... ...  ..++|  +++.|+.... +     ..|+.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Ccc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            467788999999998875432     688999988864433221 111  45888  4555544432 2     367888


Q ss_pred             EccCCCe-eEEEEcccccceE-eEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          252 DVRVRDH-IVETYRGHNQEVC-GLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       252 d~~~~~~-~~~~~~~h~~~v~-~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      ++.++.. -...+........ .+..+.++++++..+.   ++.+.+++.......  .  ...+.........+. +..
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~  279 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE--P--FVFLPRRKDHEYSLD-HYQ  279 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC--c--eEEEECCCCCEEEEE-eCC
Confidence            8877631 1223332222222 3334558887765443   457888885443221  0  111111112222222 222


Q ss_pred             CCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeC--CCCeEEEEEcCCCCeEEEEecCCCCc--EEEEeCCCceeeEEEe-
Q 012679          327 QSNLLATGGGGGDRCIKFWNTH-TGACLNSVDT--GSQVCALLWNKNERELLSSHGFTQNQ--LTLWKYPSMVKMAELS-  400 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~--i~iwd~~~~~~~~~~~-  400 (458)
                      +..++.+..+.....|...++. .++....+..  ...+..+.+.  ++.|+.. ...++.  +.+++.... .+..+. 
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~-~~~~l~~  355 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTR-EVIGIAF  355 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCC-ceEEecC
Confidence            2333334322233445555655 2332223333  2357777777  3344443 334554  444554332 333333 


Q ss_pred             CCCCcEEEEEEc--CCC-CEEEEEeC---CCcEEEEecCCCC
Q 012679          401 GHTSRVLFMAQS--PDG-CTVASAAA---DETLRFWNVFGAP  436 (458)
Q Consensus       401 ~h~~~V~~l~~s--pdg-~~l~s~s~---Dg~i~iW~~~~~~  436 (458)
                      .....+..+.++  +++ .++++.+.   -+.+..+|+.++.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            222233334444  343 34444443   3667778876543

>PHA03098 kelch-like protein; Provisional

Probab=96.25  E-value=0.22  Score=51.12  Aligned_cols=191  Identities=10%  Similarity=0.124  Sum_probs=91.5

Q ss_pred             EEEEeCCCeEEEEeCCC------cEEEEEccCCCeeEEEEcc---cccceEeEEEcCCCCEEEEEECC-----CcEEEEe
Q 012679          230 GSLAWNNHILTTGGMDG------LIINNDVRVRDHIVETYRG---HNQEVCGLKWSASGQQLASGGND-----NLLHIWD  295 (458)
Q Consensus       230 ~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd  295 (458)
                      .++..++.+++.|+.++      .+..||..+...  ..+..   .......+.  -+++.++.||.+     ..+..||
T Consensus       289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd  364 (534)
T PHA03098        289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWK  364 (534)
T ss_pred             eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEc
Confidence            45556777778887543      567788776543  22211   111112222  267778888865     3477788


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC----CeEEEEECCCCCeeEEEeCCCC--eEEEEEcC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD----RCIKFWNTHTGACLNSVDTGSQ--VCALLWNK  369 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d----~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~  369 (458)
                      ..+......    ..+...... .+++.  .++.+++.||-..+    ..+..||..+++....-.....  -.+++. .
T Consensus       365 ~~~~~W~~~----~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~  436 (534)
T PHA03098        365 PGESKWREE----PPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-H  436 (534)
T ss_pred             CCCCceeeC----CCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-E
Confidence            776543211    111110111 11222  24567776641111    4688899887654332211111  112222 2


Q ss_pred             CCCeEEEEecCCC-------CcEEEEeCCCce--eeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 012679          370 NERELLSSHGFTQ-------NQLTLWKYPSMV--KMAELSGHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVFGA  435 (458)
Q Consensus       370 ~~~~l~~~~g~~d-------~~i~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~~  435 (458)
                      ++ .+++.+|...       ..+.+||..+.+  .+..+.........+.+  ++..++.||.+     ..|.+||....
T Consensus       437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        437 DG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            33 4444444322       237888876543  22222111111112222  67777777764     46777876654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.21  E-value=1.1  Score=41.97  Aligned_cols=234  Identities=10%  Similarity=0.154  Sum_probs=108.9

Q ss_pred             ccccceeeccCCCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ++.++.+++..+..++++..+.|..- .+.|+ ...+..-..-.+....+....++..++ ++..|.|..= ...++.-.
T Consensus        61 ~~~l~~I~f~~~~g~ivG~~g~ll~T-~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~  137 (302)
T PF14870_consen   61 DYHLNSISFDGNEGWIVGEPGLLLHT-TDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ  137 (302)
T ss_dssp             --EEEEEEEETTEEEEEEETTEEEEE-SSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred             eeeEEEEEecCCceEEEcCCceEEEe-cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence            46678888877777777777754433 33343 333221111123344444444443333 4455544332 23333333


Q ss_pred             EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+...-...+..+..  ++.+++++.......-||.-...- ...-..-...|..+.|.|++.+.+.+ ..|.|+.=+..
T Consensus       138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred             EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence            333224566777665  567777776655566777643222 12222346789999999998876655 88888887721


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCCCe
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNERE  373 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~  373 (458)
                      ..... -.+.+..+......+..++|.++ ..+.++|+   .|.+ +.....|+.=+...    ....+..+.|..+.+-
T Consensus       216 ~~~~~-w~~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg---~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g  289 (302)
T PF14870_consen  216 DDGET-WSEPIIPIKTNGYGILDLAYRPP-NEIWAVGG---SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKG  289 (302)
T ss_dssp             TEEEE-E---B-TTSS--S-EEEEEESSS-S-EEEEES---TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEE
T ss_pred             CCccc-cccccCCcccCceeeEEEEecCC-CCEEEEeC---CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCce
Confidence            11100 00001111122334789999985 66666664   4443 33444555433332    2456888999877777


Q ss_pred             EEEEecCCCCcEEEE
Q 012679          374 LLSSHGFTQNQLTLW  388 (458)
Q Consensus       374 l~~~~g~~d~~i~iw  388 (458)
                      ++.  | .+|.|.-|
T Consensus       290 f~l--G-~~G~ll~~  301 (302)
T PF14870_consen  290 FVL--G-QDGVLLRY  301 (302)
T ss_dssp             EEE----STTEEEEE
T ss_pred             EEE--C-CCcEEEEe
Confidence            776  4 56666544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.83  E-value=0.015  Score=59.79  Aligned_cols=159  Identities=19%  Similarity=0.313  Sum_probs=92.1

Q ss_pred             CEEEEEECC--CCCeeeEEE---ecCCCCCEEEEEEcC---CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          161 STVYLWDAS--DGTTSELVT---VDDENGPVTSVNWAP---DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       161 ~~v~iwd~~--~~~~~~~~~---~~~h~~~V~~v~~s~---~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      |.+.||+++  .|++.+...   .......+.-|.|.|   +.-++..+..+|.|++....+... ..+.+ |..++..+
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccH
Confidence            678889875  455533222   222345566777776   667888888999998877655443 33344 88877777


Q ss_pred             EeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679          233 AWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       233 ~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                      ++- ..++...+                               .+|||+.||.++.||.++.|.+.-... ....+++..
T Consensus       231 a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~-~~~rclhew  278 (1283)
T KOG1916|consen  231 AFFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGK-IVHRCLHEW  278 (1283)
T ss_pred             HHHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeecc-ccHhhhhcc
Confidence            661 11111110                               688999999999999888887543322 112234555


Q ss_pred             ccccc-ceeEEEecCC-------CCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          312 EEHTS-AVKAIAWCPF-------QSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       312 ~~h~~-~v~~l~~~p~-------~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      +.|.. +-.|.-++.+       +.+.+...+....+.+++|.....+|+
T Consensus       279 kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  279 KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            56652 2222222221       112222222236677999998888777

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.70  E-value=0.56  Score=48.10  Aligned_cols=120  Identities=11%  Similarity=0.230  Sum_probs=77.7

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCCcEEEEE
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINND  252 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg~i~vwd  252 (458)
                      .++...-...+-+.-+.-++..++-.....+.|||...+.....-.-.....|.++.|    ++..+++.+....|.+|-
T Consensus        23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3444334455666666656655554455589999998887544433236889999999    477888888888888875


Q ss_pred             cc-----CCC---eeEEE--Ecccc-cceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          253 VR-----VRD---HIVET--YRGHN-QEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       253 ~~-----~~~---~~~~~--~~~h~-~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      -.     ...   ..++.  +..|+ .+|.+..|.++|.+++.+|  +.+.|+|-..
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~  157 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWL  157 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCc
Confidence            32     111   11221  23444 6799999999997766554  5788887443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.67  E-value=1.4  Score=44.17  Aligned_cols=170  Identities=14%  Similarity=0.236  Sum_probs=99.4

Q ss_pred             CCEEEEEEcCCCCEEEEE-e--cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC------CeEEEEeCCCcEEEEEcc
Q 012679          184 GPVTSVNWAPDGRHIAIG-L--NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN------HILTTGGMDGLIINNDVR  254 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g-~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~------~~l~sg~~dg~i~vwd~~  254 (458)
                      .+|..++|. ||+.++-. -  .+|.+++=|   .+.+..|.     .|..++|.+      ..|++.-....|.||.+.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            468899997 56554433 1  344444322   23344443     588899942      356666777899999885


Q ss_pred             CCC-----eeEEEEccc----ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          255 VRD-----HIVETYRGH----NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       255 ~~~-----~~~~~~~~h----~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      -..     .++......    .---.++.|+|....|++-.....-.+++++.....    ....+ ...+-|.|.+|.+
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr----VkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR----VKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce----EEEec-cCCceEEEEEecC
Confidence            221     111111111    111246789999999988776655556666655431    12223 3467899999999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCCCC-----eeEEEeCCCCeEEEEEcC
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHTGA-----CLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~~~-----~~~~~~~~~~v~~~~~s~  369 (458)
                      ||..|+++-|  ..=.-++||-....     ..-.++.++.|+++.-.-
T Consensus       166 DG~RLVVAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~  212 (671)
T PF15390_consen  166 DGQRLVVAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV  212 (671)
T ss_pred             cCCEEEEEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence            9998887765  45567889854322     112334455555554433

>PHA02790 Kelch-like protein; Provisional

Probab=95.63  E-value=0.6  Score=47.14  Aligned_cols=132  Identities=11%  Similarity=0.035  Sum_probs=73.0

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceee--EEecCCCcccEEEEEeCCC
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQL--RTLRGGHRSRVGSLAWNNH  237 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~~~  237 (458)
                      .+..||..++++..+..+.........+.  -+|...++|+.++  .+..||..+++-.  ..+.. ..........++.
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~r~~~~~~~~~g~  364 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-PRCNPAVASINNV  364 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-CCcccEEEEECCE
Confidence            67889988887755554443222222222  3677778887543  5888987665432  22221 1223344556888


Q ss_pred             eEEEEeCCC---cEEEEEccCCCeeEE-EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          238 ILTTGGMDG---LIINNDVRVRDHIVE-TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       238 ~l~sg~~dg---~i~vwd~~~~~~~~~-~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      +.+.|+.++   .+..||.++...... .+.........+.  -++++.+.|+   .+.+||..+..-
T Consensus       365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W  427 (480)
T PHA02790        365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTW  427 (480)
T ss_pred             EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcE
Confidence            888888664   467888876543111 1111111112222  3566666664   577888876543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.59  E-value=3.8  Score=43.31  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      .-.|..|..+|+|++||..+..|. .|-.+.. ......+.+ ....|.|=.                 +.+.  ..  .
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~-g~~~i~Crt-----------------~~v~--~~--~  140 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFED-GKKEINCRT-----------------VPVD--ER--F  140 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccC-CCcceeEEE-----------------EEec--hh--h
Confidence            346889999999999999888764 4433322 111122222 112222211                 1111  10  0


Q ss_pred             EEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCCC
Q 012679          262 TYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      ....+...|..+.|+|.   +..|+.-+.|+++++||+.....
T Consensus       141 ~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  141 FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence            11234567888999995   68999999999999999975543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.54  E-value=2.1  Score=40.05  Aligned_cols=268  Identities=11%  Similarity=0.115  Sum_probs=120.7

Q ss_pred             ccceeecc-CCCeEEEEcCCEEEEEECCCCC-eeeEE-EecCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWG-SSNVLAIALGSTVYLWDASDGT-TSELV-TVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~-~~~~la~~~d~~v~iwd~~~~~-~~~~~-~~~~h-~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      .+..+.|. +++-++++..+.|.- ..+.|+ ..... ..... .-...+|.|..+ ..+++| ..| +.+.....++.-
T Consensus        18 ~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW   93 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTW   93 (302)
T ss_dssp             -EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-
T ss_pred             ceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCc
Confidence            45556664 466777787776532 223332 22221 11110 123677887643 344444 455 344444455444


Q ss_pred             EEecC--CCcccEEE-EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          219 RTLRG--GHRSRVGS-LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       219 ~~~~~--~~~~~v~~-l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      ..+..  .-...... .+.+......++..|.|+.=. ..+..-......-.+.+..+.-++||++++++...+...-||
T Consensus        94 ~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~  172 (302)
T PF14870_consen   94 ERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWD  172 (302)
T ss_dssp             EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-
T ss_pred             EEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEec
Confidence            33321  12222222 333444444445556543321 222222233344557788899999999999987776677888


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC-CCCCeeEE--Ee---CCCCeEEEEEcC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT-HTGACLNS--VD---TGSQVCALLWNK  369 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~-~~~~~~~~--~~---~~~~v~~~~~s~  369 (458)
                      .-...-      ...-..-...|.+|.|.|++...+++    ..|.|++=+. ...+.-..  ..   ....+..++|.+
T Consensus       173 ~G~~~w------~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  173 PGQTTW------QPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             TT-SS-------EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred             CCCccc------eEEccCccceehhceecCCCCEEEEe----CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence            543222      22223346789999999985554543    6788888772 22222111  11   123478999998


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEE---EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAE---LSGHTSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~---~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      ++...++  | ..|.+ +.....++.-..   ...-...+..+.|.++.+-+| -+.||.|.=|
T Consensus       243 ~~~~wa~--g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  243 PNEIWAV--G-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             SS-EEEE--E-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             CCCEEEE--e-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            8766665  3 23433 333333332222   223345578888876544444 5688887655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.51  E-value=0.53  Score=48.27  Aligned_cols=109  Identities=17%  Similarity=0.302  Sum_probs=73.9

Q ss_pred             eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec--CCCCcEEEEeCCCCCCeEEEEEC
Q 012679          270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC--PFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      ..-+.-+.-++.-++-+....+.|||.+.+..    +....+ .....|..+.|.  |++..++++|   ..+.|.++--
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l----E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVL----EYEESF-SEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEE----EEeeee-cCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEc
Confidence            33444444455445555556899999987653    222333 456789999984  6788899988   6888888853


Q ss_pred             C---------CCCeeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          348 H---------TGACLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       348 ~---------~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      .         +...++.++    +..+|...+|.++|..++++    .+++.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s----GNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS----GNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe----CCEEEEECC
Confidence            2         223455543    34689999999999988874    578888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.29  E-value=0.75  Score=48.45  Aligned_cols=38  Identities=13%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             CCCcEEEEEEcCC---CCEEEEEeCCCcEEEEecCCCCccc
Q 012679          402 HTSRVLFMAQSPD---GCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       402 h~~~V~~l~~spd---g~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      +...|..+.|+|.   +..|+.-..|+++|+||+.......
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCe
Confidence            4456888888885   5788888888999999987654433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.26  E-value=0.082  Score=56.11  Aligned_cols=148  Identities=15%  Similarity=0.085  Sum_probs=94.1

Q ss_pred             ceEeEEEcCCCCEEEEE--ECCCcEEEEeCCCCCCCCcce--ee---eeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679          269 EVCGLKWSASGQQLASG--GNDNLLHIWDRSMASSNSVTQ--WL---HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC  341 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg--~~dg~i~iwd~~~~~~~~~~~--~~---~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~  341 (458)
                      .+..+...+|+...++.  +++-.|..||++........+  ++   ........-+.++.|.|.-....+.+.  .|+.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls  179 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS  179 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence            34455556676655443  344578999988755432111  00   111122344568889986555555554  7889


Q ss_pred             EEEEECCCCC-eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC----CCcEEEEEEcCCCC
Q 012679          342 IKFWNTHTGA-CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH----TSRVLFMAQSPDGC  416 (458)
Q Consensus       342 i~lwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h----~~~V~~l~~spdg~  416 (458)
                      |++.-+.-.. .+..+......++++|+|.|+.+++  |...|++.-|.. .++....+.+.    ..+|++|+|-....
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence            9888765432 3344566777999999999999999  888999888864 33333333221    37899999987777


Q ss_pred             EEEEE
Q 012679          417 TVASA  421 (458)
Q Consensus       417 ~l~s~  421 (458)
                      ++++-
T Consensus       257 flvvy  261 (1405)
T KOG3630|consen  257 FLVVY  261 (1405)
T ss_pred             EEEEe
Confidence            76644

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.23  E-value=0.0023  Score=61.36  Aligned_cols=143  Identities=17%  Similarity=0.280  Sum_probs=101.5

Q ss_pred             EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      -...|-+.+.-++.++.+..+..||-....       .... ..++....++|..++..+++.+.  ..+.+.+||+.+.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-------~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~e  107 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-------ILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSE  107 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcce-------eccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhh
Confidence            346678877779999999999999954332       1122 23455567889887777776655  7889999999764


Q ss_pred             CeeE-EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679          351 ACLN-SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET  426 (458)
Q Consensus       351 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~  426 (458)
                      ..-+ .......-.-+.|++.+.+++.  |...+.+.|++..+.+.+...-.|..+++++++.+.+. .+.++.|..
T Consensus       108 ytqqLE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  108 YTQQLESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             hHHHHhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            3211 1112223334789999999998  67899999999988888777666999999999999774 444555543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.22  E-value=0.8  Score=50.22  Aligned_cols=231  Identities=12%  Similarity=0.071  Sum_probs=103.6

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      .....++|+|...++|.|+.+|.|++|-...-+..........-.+..+.+  ..........+..+.+|.......   
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---  112 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---  112 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence            345678999999999999999999999755443332222101111222222  122233334445555555432221   


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC  341 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~  341 (458)
                        ..+.+.+++..-.+--.. +.| ..+.+++||..-.......  ...+..+...+ ....++.-......    .+-.
T Consensus       113 --~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~s~~~~~~~~~----~~~~  181 (993)
T KOG1983|consen  113 --VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLK--YAGTESSNFVP-YESLSPTLSIEGLV----IDLD  181 (993)
T ss_pred             --eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccce--eccccccccce-eeeeccceeeeccc----cccc
Confidence              112233333332222223 344 7788888886543221000  00111111000 00000000000000    1111


Q ss_pred             EEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679          342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       342 i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~  421 (458)
                      -.+|-+..-. .........+.+..+....+..+.   +..+.+.+|+.........+.     +.....++++..++++
T Consensus       182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~  252 (993)
T KOG1983|consen  182 TVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIG---FNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSY  252 (993)
T ss_pred             cceeeccccc-ccccccccccceeeeecCCCccee---eeeeeeeehhcccccchhhcc-----cccccCccCCceEEEE
Confidence            1111111111 111112233344444444444432   245566666654433322222     2222228899999999


Q ss_pred             eCCCcEEEEecCCCCc
Q 012679          422 AADETLRFWNVFGAPQ  437 (458)
Q Consensus       422 s~Dg~i~iW~~~~~~~  437 (458)
                      -.||.+.+||+..+..
T Consensus       253 h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  253 HTDGSYAFWDVSSGKL  268 (993)
T ss_pred             EecCCEEeeecCCCce
Confidence            9999999999998754

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.15  E-value=1.3  Score=43.02  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             cceEeEEEcCCCCEEEEEE-----------CCC-cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          268 QEVCGLKWSASGQQLASGG-----------NDN-LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+....  .....+.........+++.+++  ++++. 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~--d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY--DKSNVFAEELSMVTGLAVAVGG--VYVAT-   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc--ceeEEeecCCCCccceeEecCC--EEEeC-
Confidence            3456789999999877653           223 67777644332211  0122333333456789998865  66653 


Q ss_pred             CCCCCeEEEEECCCC-----Ce--e-EEEeC-----CCCeEEEEEcCCCCeEEEEecCC------------------CCc
Q 012679          336 GGGDRCIKFWNTHTG-----AC--L-NSVDT-----GSQVCALLWNKNERELLSSHGFT------------------QNQ  384 (458)
Q Consensus       336 g~~d~~i~lwd~~~~-----~~--~-~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~------------------d~~  384 (458)
                        .....++.|....     +.  + ..+..     +.....+.|.|+|...++. |..                  .+.
T Consensus        89 --~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        89 --PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH-GNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             --CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec-ccCCCceeccCCCccCcccccCce
Confidence              3333334454321     21  1 12222     2347789999999766654 311                  134


Q ss_pred             EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679          385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      |.-++....+......++ .....++|+|+|+++++-..+
T Consensus       166 i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       166 LFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence            555555544332222333 335689999999988765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=95.11  E-value=5.4  Score=42.25  Aligned_cols=196  Identities=8%  Similarity=-0.020  Sum_probs=99.5

Q ss_pred             EEEEEe--CCCeEEEEe-C----CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC------CcEEEEe
Q 012679          229 VGSLAW--NNHILTTGG-M----DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND------NLLHIWD  295 (458)
Q Consensus       229 v~~l~~--~~~~l~sg~-~----dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d------g~i~iwd  295 (458)
                      +..+.|  ++++|+.+. .    ...|++.|+.++..+...+.+-   -..++|++|++.|+....+      ..|+.++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            333444  455555442 2    2358888887665322223221   1458999999877766543      3577777


Q ss_pred             CCCCCCCCcceeeeeeccccccee-EEEecCCCCcEEEEeCCCCCCeEEEEECC--CCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVK-AIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      +.+....  ...+  +........ .+..+.++..+++......++.+.+++..  ++.....+.....+..-..+.. .
T Consensus       206 lgt~~~~--d~lv--~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  280 (686)
T PRK10115        206 IGTPASQ--DELV--YEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQ-H  280 (686)
T ss_pred             CCCChhH--CeEE--EeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCC-C
Confidence            7766321  1112  222222222 33334467777766655566789999953  3443333333322221112333 3


Q ss_pred             eEEEEec--CCCCcEEEEeCCCceeeEEEeCC-C-CcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          373 ELLSSHG--FTQNQLTLWKYPSMVKMAELSGH-T-SRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       373 ~l~~~~g--~~d~~i~iwd~~~~~~~~~~~~h-~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      .++..+.  .....|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3333332  22334444455422222344445 3 367888887 33566666677776666554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.07  E-value=5.8  Score=42.30  Aligned_cols=153  Identities=16%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             ceEeEEEcCC-CCEEEEEEC----------CCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeC
Q 012679          269 EVCGLKWSAS-GQQLASGGN----------DNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       269 ~v~~l~~spd-~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      .|.++.|..| +.++++|+.          .|.|.|+.......      +.....+  .+.+.++.  -.++.++|.  
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------L~~v~e~~v~Gav~aL~--~fngkllA~--  845 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------LELVAETVVKGAVYALV--EFNGKLLAG--  845 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------eeeeeeeeeccceeehh--hhCCeEEEe--
Confidence            4666678887 778888752          46777877766322      2222222  34454444  344566664  


Q ss_pred             CCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEE-eCCCCcEEEEEE
Q 012679          336 GGGDRCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAEL-SGHTSRVLFMAQ  411 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~-~~h~~~V~~l~~  411 (458)
                        -...|++|+..+.+.++.- ....++..+...-.+.++++  |.--+.+.+..+...+  ..... ..+..+.+++.+
T Consensus       846 --In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V--gDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei  921 (1096)
T KOG1897|consen  846 --INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV--GDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI  921 (1096)
T ss_pred             --cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE--eeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence              5678999999988555433 44567888999999999999  6567777776665443  33222 246677888887


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          412 SPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      -.+. .++.+..+|.+.+-...+..
T Consensus       922 l~~d-~ylgae~~gNlf~v~~d~~~  945 (1096)
T KOG1897|consen  922 LDDD-TYLGAENSGNLFTVRKDSDA  945 (1096)
T ss_pred             ecCc-eEEeecccccEEEEEecCCC
Confidence            7554 44556778888887766443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.95  E-value=3.9  Score=39.72  Aligned_cols=101  Identities=14%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             CCEEEEEEcCCCCEEEEEe-----------cCC-eEEEEeCCC--ce--eeEEecCCCcccEEEEEeC-CCeEEEEeCCC
Q 012679          184 GPVTSVNWAPDGRHIAIGL-----------NNC-QVQLWDSTA--NR--QLRTLRGGHRSRVGSLAWN-NHILTTGGMDG  246 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg  246 (458)
                      .....|+|.++|+++++-.           ..+ .|.+++-..  ++  ....+.. .......+++. +. |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G-lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG-VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC-EEEeCCCe
Confidence            3467899999998766642           223 777776432  22  2233332 23345677773 33 55555554


Q ss_pred             cEEEEEccCC-----C--eeEEEEcc----cccceEeEEEcCCCCEEEEEE
Q 012679          247 LIINNDVRVR-----D--HIVETYRG----HNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       247 ~i~vwd~~~~-----~--~~~~~~~~----h~~~v~~l~~spd~~~l~sg~  286 (458)
                      .+++.|....     .  .++..+..    +......+.|.|||.+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3344454321     1  12222322    234477899999998776555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.89  E-value=3.6  Score=39.08  Aligned_cols=106  Identities=11%  Similarity=0.063  Sum_probs=56.0

Q ss_pred             CCCEEEEEecCC-----eEEEEeCCCcee---eEEecC-C-CcccEEEEEeCCCeEEEEeCC-----CcEEEEEccCCCe
Q 012679          194 DGRHIAIGLNNC-----QVQLWDSTANRQ---LRTLRG-G-HRSRVGSLAWNNHILTTGGMD-----GLIINNDVRVRDH  258 (458)
Q Consensus       194 ~g~~la~g~~dg-----~v~iwd~~~~~~---~~~~~~-~-~~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~  258 (458)
                      ++.++++|+.++     .+..||+.+.+.   ...+.. . ......+...++.+.+.|+..     ..+..||+.+..-
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            566677777543     577777766553   122221 0 111223344577787887752     3578888876653


Q ss_pred             eEE-EEcccccceEeEEEcCCCCEEEEEECCC----cEEEEeCCCCC
Q 012679          259 IVE-TYRGHNQEVCGLKWSASGQQLASGGNDN----LLHIWDRSMAS  300 (458)
Q Consensus       259 ~~~-~~~~h~~~v~~l~~spd~~~l~sg~~dg----~i~iwd~~~~~  300 (458)
                      ... .+... ..........++++.+.|+.++    .+.+||..+..
T Consensus       152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            211 11111 1111222234677788887764    35678877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.88  E-value=1.4  Score=45.88  Aligned_cols=155  Identities=9%  Similarity=0.092  Sum_probs=95.0

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCCeee----EEEec----------------CCCCCEEEEEEcC--CCCEEE
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSE----LVTVD----------------DENGPVTSVNWAP--DGRHIA  199 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~----~~~~~----------------~h~~~V~~v~~s~--~g~~la  199 (458)
                      |.-|+..-+..+++.++..+.|+||+...-....    ...+.                .....|+.|....  +...|+
T Consensus        39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl  118 (717)
T PF08728_consen   39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL  118 (717)
T ss_pred             cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence            4445555555778888999999999976432211    00100                0112255554443  556899


Q ss_pred             EEecCCeEEEEeCCC-------c----ee-e------EEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCC-
Q 012679          200 IGLNNCQVQLWDSTA-------N----RQ-L------RTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVR-  256 (458)
Q Consensus       200 ~g~~dg~v~iwd~~~-------~----~~-~------~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~-  256 (458)
                      ++..||.|.+|.+++       .    +. .      -.+.......+++++++    .++||+++....|.||-.... 
T Consensus       119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~  198 (717)
T PF08728_consen  119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD  198 (717)
T ss_pred             EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Confidence            999999999996521       0    00 0      00111134567788875    478888888888888765442 


Q ss_pred             -CeeEEEEcccccceEeEEEcCCC---C---EEEEEECCCcEEEEeC
Q 012679          257 -DHIVETYRGHNQEVCGLKWSASG---Q---QLASGGNDNLLHIWDR  296 (458)
Q Consensus       257 -~~~~~~~~~h~~~v~~l~~spd~---~---~l~sg~~dg~i~iwd~  296 (458)
                       ......-..|...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       199 ~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  199 ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence             11111122356678899997743   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.85  E-value=4.2  Score=39.61  Aligned_cols=240  Identities=12%  Similarity=0.165  Sum_probs=105.1

Q ss_pred             CeeeEEEecCCCCCEEEEEEc-----------CCCCEEEEEe-cCCeEEEEeCCCc----eeeEEecC-------CCcc-
Q 012679          172 TTSELVTVDDENGPVTSVNWA-----------PDGRHIAIGL-NNCQVQLWDSTAN----RQLRTLRG-------GHRS-  227 (458)
Q Consensus       172 ~~~~~~~~~~h~~~V~~v~~s-----------~~g~~la~g~-~dg~v~iwd~~~~----~~~~~~~~-------~~~~-  227 (458)
                      ++.....+..-.+.....-|+           .+.++|++.+ .++.|+|.|+.+.    +..+.+..       +-.. 
T Consensus        53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P  132 (461)
T PF05694_consen   53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP  132 (461)
T ss_dssp             SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE
T ss_pred             cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC
Confidence            443333344334456666665           2456777765 7789999998743    44444432       0111 


Q ss_pred             -cEEEEEeCCCeEEEE--eC----CCcEEEEEccCCCeeEEEEcc---cccceEeEEEcCCCCEEEEEE-----------
Q 012679          228 -RVGSLAWNNHILTTG--GM----DGLIINNDVRVRDHIVETYRG---HNQEVCGLKWSASGQQLASGG-----------  286 (458)
Q Consensus       228 -~v~~l~~~~~~l~sg--~~----dg~i~vwd~~~~~~~~~~~~~---h~~~v~~l~~spd~~~l~sg~-----------  286 (458)
                       .+.|+. +|.+++++  +.    -|.+.+.|-++-+. ......   ....-..+-|.|..+.++|..           
T Consensus       133 HT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v-~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf  210 (461)
T PF05694_consen  133 HTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEV-KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF  210 (461)
T ss_dssp             EEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--E-EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred             ceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccc-cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence             122222 56677765  22    24566777664432 233322   122345677788888887763           


Q ss_pred             ---------CCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEe--cCCCCcEEEEeCCCCCCeEEEE-ECCCCC-
Q 012679          287 ---------NDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAW--CPFQSNLLATGGGGGDRCIKFW-NTHTGA-  351 (458)
Q Consensus       287 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~p~~~~ll~s~~g~~d~~i~lw-d~~~~~-  351 (458)
                               ...++.+||+...+.      ++++.-.  ......|.|  .|....-++.+.  ...+|..| ....++ 
T Consensus       211 ~~~d~~~~~yG~~l~vWD~~~r~~------~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W  282 (461)
T PF05694_consen  211 NPEDLEAGKYGHSLHVWDWSTRKL------LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEW  282 (461)
T ss_dssp             -TTTHHHH-S--EEEEEETTTTEE------EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEE
T ss_pred             ChhHhhcccccCeEEEEECCCCcE------eeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCe
Confidence                     245899999998776      5555432  223445555  454555555443  44455444 334443 


Q ss_pred             ---eeEEEeC------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc---eeeEEEe-C-----
Q 012679          352 ---CLNSVDT------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM---VKMAELS-G-----  401 (458)
Q Consensus       352 ---~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~---~~~~~~~-~-----  401 (458)
                         .+..+..                  ..-++.|..|.|.++|.++ ....|.|+.||+..-   +.+.++. |     
T Consensus       283 ~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~  361 (461)
T PF05694_consen  283 AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRK  361 (461)
T ss_dssp             EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-
T ss_pred             eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEecc
Confidence               1222211                  2347899999999999998 468999999999653   2333221 1     


Q ss_pred             ----------CCCcEEEEEEcCCCCEEEEEe
Q 012679          402 ----------HTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       402 ----------h~~~V~~l~~spdg~~l~s~s  422 (458)
                                -.+...-|..|-||+.|....
T Consensus       362 ~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  362 GDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence                      012346678888998876543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.80  E-value=6.8  Score=41.83  Aligned_cols=155  Identities=12%  Similarity=0.130  Sum_probs=92.2

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccce-------------eEEEecC--CCCcEEEEeCC-C-----
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV-------------KAIAWCP--FQSNLLATGGG-G-----  337 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v-------------~~l~~~p--~~~~ll~s~~g-~-----  337 (458)
                      +..++.++.|+.|.-.|..+++.      +..+.. .+.|             ..+.-.|  .+. ++++|+. .     
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~------~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~  331 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKL------CEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYST  331 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCE------EEEecC-CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccc
Confidence            45778888899999999888875      322211 1111             0011111  123 3344421 1     


Q ss_pred             --CCCeEEEEECCCCCeeEEEeCCCC------------------e-EEEEEcCCCCeEEEEecC----------------
Q 012679          338 --GDRCIKFWNTHTGACLNSVDTGSQ------------------V-CALLWNKNERELLSSHGF----------------  380 (458)
Q Consensus       338 --~d~~i~lwd~~~~~~~~~~~~~~~------------------v-~~~~~s~~~~~l~~~~g~----------------  380 (458)
                        .+|.|+-+|.++|+.+..+....+                  + ...++++....++...|.                
T Consensus       332 ~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~  411 (764)
T TIGR03074       332 DEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEK  411 (764)
T ss_pred             cCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCccc
Confidence              268899999999999988753210                  1 234556665665553331                


Q ss_pred             CCCcEEEEeCCCceeeEEEeC--CC-------CcEEEEEEcC-CCC---EEEEEeCCCcEEEEecCCCCccccc
Q 012679          381 TQNQLTLWKYPSMVKMAELSG--HT-------SRVLFMAQSP-DGC---TVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~--h~-------~~V~~l~~sp-dg~---~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      -.+.|.-.|..+++..-.++.  |+       ....-+.+.. +|+   .++.++.+|.+.+.|-.+++.+.+.
T Consensus       412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            134567778888888877754  21       1111122322 563   7889999999999999988877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.68  E-value=4.2  Score=38.86  Aligned_cols=264  Identities=11%  Similarity=0.067  Sum_probs=127.8

Q ss_pred             eec-cCCCeEEEEcCCEEEEEECCCC-CeeeEE-EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          147 LDW-GSSNVLAIALGSTVYLWDASDG-TTSELV-TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       147 ~~~-~~~~~la~~~d~~v~iwd~~~~-~~~~~~-~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      +.| ++++.++++.++.|..=. +.| ...... .+......+.++.|.++ ..+++| ..|.|..- .+.++.-..+..
T Consensus        51 v~F~d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~S-~DgG~tW~~~~~  126 (334)
T PRK13684         51 IAFTDPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLHT-TDGGKNWTRIPL  126 (334)
T ss_pred             EEEeCCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEEE-CCCCCCCeEccC
Confidence            444 446777777777654422 222 222211 11112345778888653 344444 44443332 222332222211


Q ss_pred             C--Cc-ccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE-EeCCCC
Q 012679          224 G--HR-SRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI-WDRSMA  299 (458)
Q Consensus       224 ~--~~-~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i-wd~~~~  299 (458)
                      .  .. ........++..+..++..|.|..=+- .++.-......-...+.++.+.+++.+++++.. |.+.. +|  .+
T Consensus       127 ~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~D-gG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~--~g  202 (334)
T PRK13684        127 SEKLPGSPYLITALGPGTAEMATNVGAIYRTTD-GGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWE--PG  202 (334)
T ss_pred             CcCCCCCceEEEEECCCcceeeeccceEEEECC-CCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEEEEcC--CC
Confidence            0  11 122223334433334445554433221 122111112223457888999999877766544 54442 22  11


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----CCCeEEEEEcCCCCeE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----GSQVCALLWNKNEREL  374 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l  374 (458)
                      ..    .+......-...+.++++.+++. +++++   ..|.+++=....|..-.....     ...+..+.+.+++..+
T Consensus       203 g~----tW~~~~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~  274 (334)
T PRK13684        203 QT----AWTPHQRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW  274 (334)
T ss_pred             CC----eEEEeeCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence            11    11222223346788999999655 44444   456665433344443222222     2347788899987766


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEe---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELS---GHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ++  | .+|.+. .....++.-....   .-....+.+.|..+++.++ ++..|.|.-|+
T Consensus       275 ~~--G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        275 AG--G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EE--c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            65  3 456544 3444444333332   2223577788776666555 66788887775

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.62  E-value=7.5  Score=41.48  Aligned_cols=272  Identities=12%  Similarity=0.154  Sum_probs=147.1

Q ss_pred             CCCeEEEEcCCEEEEE--ECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc
Q 012679          151 SSNVLAIALGSTVYLW--DASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR  228 (458)
Q Consensus       151 ~~~~la~~~d~~v~iw--d~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~  228 (458)
                      ...++++..||.+.-|  |..+|.........-...++.--.|+..++.-+.+..|.-..+|.. +++.+.+--  .-..
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spl--s~ke  671 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPL--SLKE  671 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEecc--chHH
Confidence            3557777778877655  5556655444432233556666677665544444445555556643 333322211  1111


Q ss_pred             EEEEE-eC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECC--------------
Q 012679          229 VGSLA-WN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGND--------------  288 (458)
Q Consensus       229 v~~l~-~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~d--------------  288 (458)
                      +..++ |+    +..|+++.. +.+.+.-+..-+. .+++..- ......+++.+....+++.+.-              
T Consensus       672 v~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~  749 (1096)
T KOG1897|consen  672 VNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEV  749 (1096)
T ss_pred             hhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceE
Confidence            22222 21    344555444 3455544432221 1233322 2334456666644444444321              


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCC--------CCCCeEEEEECCCCCeeE---E
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGG--------GGDRCIKFWNTHTGACLN---S  355 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g--------~~d~~i~lwd~~~~~~~~---~  355 (458)
                      ..++++|-++.+..    ..+.+...  ...+.+..|..+.+..+++|.+        ...|.|.++....+..+.   .
T Consensus       750 s~l~vlD~nTf~vl----~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e  825 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVL----SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE  825 (1096)
T ss_pred             EEEEEecCCceeEE----eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence            13556665543320    01122111  1234555688776667777642        245778888777643333   2


Q ss_pred             EeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          356 VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       356 ~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ....+.+.++.- -+|+.++.    -...|++|++.+.+.+..-..|..++..+...-.|..++.|..=+.+.+-.....
T Consensus       826 ~~v~Gav~aL~~-fngkllA~----In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  826 TVVKGAVYALVE-FNGKLLAG----INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             eeeccceeehhh-hCCeEEEe----cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence            233444544432 25666655    3568999999998777766778888889999889999999998888877666554


Q ss_pred             C
Q 012679          436 P  436 (458)
Q Consensus       436 ~  436 (458)
                      +
T Consensus       901 e  901 (1096)
T KOG1897|consen  901 E  901 (1096)
T ss_pred             C
Confidence            4

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.52  E-value=5  Score=40.17  Aligned_cols=274  Identities=17%  Similarity=0.150  Sum_probs=145.5

Q ss_pred             CCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          136 PDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       136 ~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ..+..|..+..+-.+-++.+-++.+.-+..||..+++..++.... ...+|..+.-+-.|+ |.+|+.+| |.+.+.+..
T Consensus       159 r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~-~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~  235 (671)
T COG3292         159 RPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPP-LDKAINALIADVQGR-LWVGTDQG-VYLQEAEGW  235 (671)
T ss_pred             cccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCc-chhhHHHHHHHhcCc-EEEEeccc-eEEEchhhc
Confidence            344456666666666665666666666788888888864433222 125666666665554 77888886 788777664


Q ss_pred             eeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          216 RQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      +.......-....|..+.-+ ...+-.|+..|..+.--.+ ........+.  .-+.|.++....+|. |-+++.++.++
T Consensus       236 ~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~r-q~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~  313 (671)
T COG3292         236 RASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPR-QGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR  313 (671)
T ss_pred             cccccCCCCcchheeeeecccCCCEEEeecccceeEecCC-CCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence            33332222234455555555 3567777777754332222 2111111111  123456666665665 56666666666


Q ss_pred             EEeCCCCCCCCcceeeeeecccc-cceeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEE
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHT-SAVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLW  367 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~  367 (458)
                      +-+..-..       ...+.... ..+...+..|  ....+...   ..-|.+.+-+-.+|..+.....  +..|+..++
T Consensus       314 ~~~a~w~~-------ma~in~~dG~v~~~~~~a~~ll~~~v~~~---ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~  383 (671)
T COG3292         314 YLTADWKR-------MAVINDSDGGVSQYEAVAPALLSWGVRQL---NSIGELMVANGSTGELVRSVHQLRGMNITTTLE  383 (671)
T ss_pred             Eecchhhh-------eeeeecCCCchhhhhccCchhcccceeec---cccceEEEecCCCCcEEEEeeeccccccchhhh
Confidence            54422110       11111111 1111111111  11111111   1233455555666766665422  456777777


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679          368 NKNERELLSSHGFTQNQLTLWKYPS-MVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLR  428 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~  428 (458)
                      ...+..-+.+   .++-+..|+..+ +....+..+ ..++|..+.-.|+++ |..|+.+|.++
T Consensus       384 d~~g~lWlgs---~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk  442 (671)
T COG3292         384 DSRGRLWLGS---MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK  442 (671)
T ss_pred             ccCCcEEEEe---cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence            7766665543   455566677666 333333333 346788888899988 66688888654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.38  E-value=2.9  Score=43.15  Aligned_cols=176  Identities=15%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeE-EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSEL-VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~-~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+-.+.|+. ..++++..+|++++|++-....... .-.+.....|..+.+..+|  +++-..+|.|.+-.-.....+++
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~  162 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRK  162 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhh
Confidence            455688988 5699999999999999875443221 1112223446666666666  44444566665544222223333


Q ss_pred             ecCCCcccEEEEEe---CC----CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          221 LRGGHRSRVGSLAW---NN----HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       221 ~~~~~~~~v~~l~~---~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      +..-......+-+|   .+    ..++-....--..++-..........+....+.+..+..||+.++|+-=..+|.|.+
T Consensus       163 ~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~  242 (829)
T KOG2280|consen  163 MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWV  242 (829)
T ss_pred             CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEE
Confidence            33211111122333   11    112111100001111121111111112222356778999999999999999999999


Q ss_pred             EeCCCCCCCCcceeeeeec--ccccceeEEEecCCC
Q 012679          294 WDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQ  327 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~  327 (458)
                      -+....+.      +-.+.  .|. +-..++|+.+.
T Consensus       243 vs~D~~~~------lce~~~~~~~-~p~qm~Wcgnd  271 (829)
T KOG2280|consen  243 VSIDLSQI------LCEFNCTDHD-PPKQMAWCGND  271 (829)
T ss_pred             Eecchhhh------hhccCCCCCC-chHhceeecCC
Confidence            88776554      22222  332 23478888743

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.25  E-value=2.1  Score=39.21  Aligned_cols=120  Identities=13%  Similarity=0.142  Sum_probs=86.9

Q ss_pred             cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      .+-...|.++.|+|+...|+++.   ....-.+|=...|+.+.++...  +..-.+.|..++.+.++  .-.++.+.++.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~---n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~--dER~~~l~~~~  156 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVT---NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV--DERDRALYLFT  156 (316)
T ss_pred             ccccccccceeeCCCcceEEEec---CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE--ehhcceEEEEE
Confidence            34455599999999988898886   3455556666789999988653  45677888888888887  55788888887


Q ss_pred             CCCceeeEE-------Ee--CC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          390 YPSMVKMAE-------LS--GH-TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       390 ~~~~~~~~~-------~~--~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +.....+..       +.  .+ ....-.++|+|..+.|..+=+-.-+.||.+....
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~  213 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP  213 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence            765422211       11  12 3457789999998888888887788888887554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.12  E-value=0.85  Score=44.66  Aligned_cols=141  Identities=16%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             CCCEEEE-EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---------CCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679          194 DGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---------NHILTTGGMDGLIINNDVRVRDHIVETY  263 (458)
Q Consensus       194 ~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~~~~~~~~~~  263 (458)
                      |..+|.. |.....++--|++.|+.+..... |..-|  +.++         ...-+.|-.+..|.-.|.+.....+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~-~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeec-CCcce--eecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            4444433 44455677778999999988886 55443  3332         2344556666667777877655322221


Q ss_pred             cccccceEeEEEcC----CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          264 RGHNQEVCGLKWSA----SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       264 ~~h~~~v~~l~~sp----d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                       .....++.-.|+.    ...++|+|++.|.|++||--....      ...+.+-..+|..+....+|..+||+|    .
T Consensus       555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA------KtalP~lG~aIk~idvta~Gk~ilaTC----k  623 (776)
T COG5167         555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA------KTALPGLGDAIKHIDVTANGKHILATC----K  623 (776)
T ss_pred             -eehhccccccccccccccCceEEEecCCCceeeehhhcchh------hhcCcccccceeeeEeecCCcEEEEee----c
Confidence             1122233333332    456999999999999999654433      233455677899999999999999997    4


Q ss_pred             CeEEEEECC
Q 012679          340 RCIKFWNTH  348 (458)
Q Consensus       340 ~~i~lwd~~  348 (458)
                      ..|.+-|++
T Consensus       624 ~yllL~d~~  632 (776)
T COG5167         624 NYLLLTDVP  632 (776)
T ss_pred             ceEEEEecc
Confidence            577777764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.11  E-value=4.5  Score=36.89  Aligned_cols=210  Identities=11%  Similarity=0.110  Sum_probs=117.8

Q ss_pred             cccEEEEEeC---CCeEEEEeCCCc-EEEEEccCCCeeEEEEccc-ccceEeEEEcCCCCEEEEEECC-----CcEEEEe
Q 012679          226 RSRVGSLAWN---NHILTTGGMDGL-IINNDVRVRDHIVETYRGH-NQEVCGLKWSASGQQLASGGND-----NLLHIWD  295 (458)
Q Consensus       226 ~~~v~~l~~~---~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd  295 (458)
                      ..+...+.++   +.-++.+-+-|+ ..++|....+.++...... ..---.-.|||||.+|...-+|     |.|-|||
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence            3344455554   344555555554 3578887766543222110 0111123589999999876543     7899999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC---------------CCCeEEEEECCCCCeeEEEeCC-
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG---------------GDRCIKFWNTHTGACLNSVDTG-  359 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~---------------~d~~i~lwd~~~~~~~~~~~~~-  359 (458)
                      .+..-.     .+-.+..|.-.-..+.|.+|+..+++..+|-               ..-.+.+.|..+|..+.+.... 
T Consensus       147 ~r~~fq-----rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~  221 (366)
T COG3490         147 AREGFQ-----RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA  221 (366)
T ss_pred             cccccc-----eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence            885432     2556667777777899999988887766421               1234666777777776655433 


Q ss_pred             ----CCeEEEEEcCCCCeEEEEecCC---CC-cEEEEeCCCceeeEEEeC-------CCCcEEEEEEcCCCCEEEEEe-C
Q 012679          360 ----SQVCALLWNKNERELLSSHGFT---QN-QLTLWKYPSMVKMAELSG-------HTSRVLFMAQSPDGCTVASAA-A  423 (458)
Q Consensus       360 ----~~v~~~~~s~~~~~l~~~~g~~---d~-~i~iwd~~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s-~  423 (458)
                          -.+..+...++|..++.+- +.   +. --.+=....++.+.-+.-       ...-|-+++.+.+..+++..+ .
T Consensus       222 ~l~~lSiRHld~g~dgtvwfgcQ-y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~  300 (366)
T COG3490         222 SLRQLSIRHLDIGRDGTVWFGCQ-YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR  300 (366)
T ss_pred             hhhhcceeeeeeCCCCcEEEEEE-eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence                3467777777777666432 11   00 000111112222222211       123456677776555555444 4


Q ss_pred             CCcEEEEecCCCCccccc
Q 012679          424 DETLRFWNVFGAPQVISK  441 (458)
Q Consensus       424 Dg~i~iW~~~~~~~~~~~  441 (458)
                      .+...+||..++..+...
T Consensus       301 GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         301 GNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             CCeEEEEEcCCCcEEecc
Confidence            456778999888766543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.08  E-value=0.9  Score=43.86  Aligned_cols=133  Identities=11%  Similarity=0.111  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec---CCCc
Q 012679          152 SNVLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR---GGHR  226 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~---~~~~  226 (458)
                      ++.+.+...|.+.-|-+..  ..+..-+... ..++|.++.||+|.+.||+--.+.+|.+++....+......   ....
T Consensus        34 NkqlfavrSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~  112 (657)
T KOG2377|consen   34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKN  112 (657)
T ss_pred             cceEEEEecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCc
Confidence            4444444444445554432  2222233333 35699999999999999999999999999974433322221   1134


Q ss_pred             ccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE
Q 012679          227 SRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       227 ~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~  286 (458)
                      ..|..+.| +..-++.....| +-+|.+......++..+.|...|.-..|.++.+.++-++
T Consensus       113 ~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  113 ANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             ceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            55888999 455666665554 556655544444566677888899899999887654443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.72  E-value=0.57  Score=41.70  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             cccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEE------Ec-------ccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          226 RSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET------YR-------GHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       226 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ..++..+..++++|++-+.+|.+++||+.+.......      +.       .....|..+.++.+|.-+++-++ |..+
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y   90 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSY   90 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEE
Confidence            3466678888999999999999999999987643322      11       34567888888888887777654 7889


Q ss_pred             EEeCCCCC
Q 012679          293 IWDRSMAS  300 (458)
Q Consensus       293 iwd~~~~~  300 (458)
                      .|+.....
T Consensus        91 ~y~~~L~~   98 (219)
T PF07569_consen   91 SYSPDLGC   98 (219)
T ss_pred             Eeccccce
Confidence            99876553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=93.67  E-value=7.7  Score=41.58  Aligned_cols=189  Identities=12%  Similarity=0.173  Sum_probs=105.4

Q ss_pred             eEEEEeCCCcEEEEEccCCCeeEEEE-------cccccceEe--EEEcCCCCEEEEEECC---CcEEEEeCCCCCC----
Q 012679          238 ILTTGGMDGLIINNDVRVRDHIVETY-------RGHNQEVCG--LKWSASGQQLASGGND---NLLHIWDRSMASS----  301 (458)
Q Consensus       238 ~l~sg~~dg~i~vwd~~~~~~~~~~~-------~~h~~~v~~--l~~spd~~~l~sg~~d---g~i~iwd~~~~~~----  301 (458)
                      -+++....|.+.+|=.+.........       ..-...|+.  +++..+|+.++.++.+   +.|++|.+.-.-.    
T Consensus        64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~  143 (753)
T PF11635_consen   64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ  143 (753)
T ss_pred             EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence            35566777888888764332211111       112334444  4555677776666655   7788765321110    


Q ss_pred             --CC---cceeeeee-cc-----------------cccceeEEEecC------CCCcEEEEeCCCC--CCeEEEEECCCC
Q 012679          302 --NS---VTQWLHRL-EE-----------------HTSAVKAIAWCP------FQSNLLATGGGGG--DRCIKFWNTHTG  350 (458)
Q Consensus       302 --~~---~~~~~~~~-~~-----------------h~~~v~~l~~~p------~~~~ll~s~~g~~--d~~i~lwd~~~~  350 (458)
                        ..   ....+..+ ..                 .-..++.+.|-+      ....++++.....  ...|.-|.+...
T Consensus       144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~  223 (753)
T PF11635_consen  144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE  223 (753)
T ss_pred             cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence              00   00001100 00                 113556666654      2344555543222  457999987653


Q ss_pred             C-eeE--------------------------EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE----
Q 012679          351 A-CLN--------------------------SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL----  399 (458)
Q Consensus       351 ~-~~~--------------------------~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~----  399 (458)
                      . .+.                          .+.....|.++....-+..++.  .+.||.|.++|-.+++.+...    
T Consensus       224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~--~~~DGsI~~~dr~t~~~~~~~~~~~  301 (753)
T PF11635_consen  224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAF--AFSDGSIEFRDRNTMKELNETRTNG  301 (753)
T ss_pred             CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEE--EEcCCeEEEEecCcchhhccccccc
Confidence            2 111                          1112345777777777777777  458999999998887655443    


Q ss_pred             e-----------C----CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679          400 S-----------G----HTSRVLFMAQSPDGCTVASAAADETLR  428 (458)
Q Consensus       400 ~-----------~----h~~~V~~l~~spdg~~l~s~s~Dg~i~  428 (458)
                      .           |    +-..+..++|||.+..++.-..||.+.
T Consensus       302 ~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  302 EPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             CCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence            1           0    112345689999999999999999966

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.66  E-value=0.36  Score=30.17  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=26.8

Q ss_pred             CCEEEEEEcCC-C--CEEEEEecCCeEEEEeCCCc
Q 012679          184 GPVTSVNWAPD-G--RHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       184 ~~V~~v~~s~~-g--~~la~g~~dg~v~iwd~~~~  215 (458)
                      +.|.+++|+|+ +  .+|+.+-..|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46899999984 4  58898888999999999853

It contains a characteristic DLL sequence motif.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=93.59  E-value=6.5  Score=36.97  Aligned_cols=233  Identities=12%  Similarity=0.018  Sum_probs=117.0

Q ss_pred             CeEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCcee------------
Q 012679          153 NVLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQ------------  217 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~------------  217 (458)
                      +.+..|.+.-+++.+...  ++..++.    +...|+++...+.-+.|++-+ ....++++++..-..            
T Consensus        14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~   89 (302)
T smart00036       14 KWLLVGTEEGLYVLNISDQPGTLEKLI----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI   89 (302)
T ss_pred             cEEEEEeCCceEEEEcccCCCCeEEec----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence            356666666677777654  3332222    356899999998777665544 344599998743221            


Q ss_pred             --eEEecCCCcccEEEEEe-CC--CeEEEEeCCCcEEEEEccCCCeeEEEEc-------ccccceEeEEEcCC--CCEEE
Q 012679          218 --LRTLRGGHRSRVGSLAW-NN--HILTTGGMDGLIINNDVRVRDHIVETYR-------GHNQEVCGLKWSAS--GQQLA  283 (458)
Q Consensus       218 --~~~~~~~~~~~v~~l~~-~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------~h~~~v~~l~~spd--~~~l~  283 (458)
                        ......++......+.. .+  ..++++.....|.++...........+.       .-..++..+..+++  ...+.
T Consensus        90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc  169 (302)
T smart00036       90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC  169 (302)
T ss_pred             cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence              00011124443333333 22  3445555666777765433211011111       11223333333333  45677


Q ss_pred             EEECCCcEEEEeCCC--CCCCCcceeeeeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeC
Q 012679          284 SGGNDNLLHIWDRSM--ASSNSVTQWLHRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDT  358 (458)
Q Consensus       284 sg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~  358 (458)
                      .|+..+...++++..  ........+ ....... .++...... ++. ++.+    .|....+-|......  ...+.-
T Consensus       170 vG~~~~~~~~~~~~~~~~~~~d~sl~-~~~~~~~~~p~~i~~l~-~~e-~Llc----~~~~~v~Vn~~G~~~~r~~~l~w  242 (302)
T smart00036      170 IGSDKGGGDVVQFHESLVSKEDLSLP-FLSEETSLKPISVVQVP-RDE-FLLC----YDEFGVFVNLYGKRRSRNPILHW  242 (302)
T ss_pred             EEEcCCCCeEEEEeeccccccccccc-ccccccccCceEEEEEC-CCe-EEEE----ECcEEEEEeCCCCccccceEEEc
Confidence            776643344555433  111000000 0001111 333333333 333 4333    566777777653122  223444


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679          359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~  401 (458)
                      .....++++.  ..++++.   .++.|.|+++.+++.++++..
T Consensus       243 ~~~p~~~~~~--~pyll~~---~~~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      243 EFMPESFAYH--SPYLLAF---HDNGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             CCcccEEEEE--CCEEEEE---cCCcEEEEECCCCceEEEEec
Confidence            5666777776  3666654   467799999999998888863

Unpublished observations.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.28  E-value=4.1  Score=35.69  Aligned_cols=104  Identities=13%  Similarity=0.224  Sum_probs=66.1

Q ss_pred             CcEEEEeCCCCCCeEEEEECC--CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC----CcEEEE---eCC--Cceee
Q 012679          328 SNLLATGGGGGDRCIKFWNTH--TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQLTLW---KYP--SMVKM  396 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d----~~i~iw---d~~--~~~~~  396 (458)
                      +.|+++.   ....|.+|++.  ..+.+..+.+-+.|..+.++..|+++++.--...    ..+++|   ...  ...++
T Consensus        29 d~Lfva~---~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAA---SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEc---CCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            4555543   45789999988  4567788888899999999999999998642111    145553   322  11111


Q ss_pred             E-EEeCC---------------------CCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCC
Q 012679          397 A-ELSGH---------------------TSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       397 ~-~~~~h---------------------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      . .+-||                     ...+.+++..| .|+.|+ | .++++.+|.+....
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g-~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-G-CGNKLVLFTLKYQT  166 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-E-cCCEEEEEEEEEEE
Confidence            1 12221                     34567888888 565554 4 45689999886443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.24  E-value=0.55  Score=40.12  Aligned_cols=72  Identities=26%  Similarity=0.452  Sum_probs=49.9

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCC---------------------ee----eEE------E-ec-------CCC
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGT---------------------TS----ELV------T-VD-------DEN  183 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~---------------------~~----~~~------~-~~-------~h~  183 (458)
                      +.++++|+.++.++++.+..|+|.+..+..                     ..    ...      . ..       ...
T Consensus         6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~   85 (173)
T PF12657_consen    6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS   85 (173)
T ss_pred             CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence            467899999999999999999999332211                     00    000      0 00       001


Q ss_pred             CCEEEEEEcCCC------CEEEEEecCCeEEEEeCCC
Q 012679          184 GPVTSVNWAPDG------RHIAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       184 ~~V~~v~~s~~g------~~la~g~~dg~v~iwd~~~  214 (458)
                      ..|..++|||-|      .+||+.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            278999999943      4889999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.21  E-value=5.2  Score=41.36  Aligned_cols=180  Identities=10%  Similarity=0.102  Sum_probs=93.0

Q ss_pred             CeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCE
Q 012679          205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~  281 (458)
                      -.|+||++ +|..+..+.-.|. .+..+.|+ ...|++...+|++++|++-.........  ......|..+.+..+|-.
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            35888885 4565655554244 88899996 6889999999999999986433211001  122334555555555543


Q ss_pred             EEEEECCCcEEEE-eCCCCCCCCcceeeeeecc-cccceeEEEe---cCC-CCcEEE-EeCCCCCCeEEEEECC--CCCe
Q 012679          282 LASGGNDNLLHIW-DRSMASSNSVTQWLHRLEE-HTSAVKAIAW---CPF-QSNLLA-TGGGGGDRCIKFWNTH--TGAC  352 (458)
Q Consensus       282 l~sg~~dg~i~iw-d~~~~~~~~~~~~~~~~~~-h~~~v~~l~~---~p~-~~~ll~-s~~g~~d~~i~lwd~~--~~~~  352 (458)
                      +.+  .+|.+.+- +......       .++.. .......-+|   .|. ...+++ ..-  ..+ ..+....  +.+.
T Consensus       142 vlt--~~g~v~~i~~~~~~~~-------~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~-~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  142 VLT--VSGQVILINGVEEPKL-------RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVG-LHICQVEESRVQL  209 (829)
T ss_pred             EEe--cCCcEEEEcCCCcchh-------hhCCCCCCccCCCcceeEecCCCcceeEEeech--hhh-hcccceecccccc
Confidence            333  34444443 3222111       11111 0111111222   221 111111 110  000 0111111  1111


Q ss_pred             eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe
Q 012679          353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       353 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      ..-....+.+..+..||+.++|+.-+  ..|.|.+-+....+...++.
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt--~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYT--ETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEe--cCCcEEEEecchhhhhhccC
Confidence            11112246788899999999999855  78999998887777776665

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.97  E-value=8.9  Score=36.77  Aligned_cols=83  Identities=17%  Similarity=0.061  Sum_probs=45.2

Q ss_pred             EEEEEECCCCCeeeEEE-ecCCCCCEEEEEEcCCCCEEEEEecC------------------------------------
Q 012679          162 TVYLWDASDGTTSELVT-VDDENGPVTSVNWAPDGRHIAIGLNN------------------------------------  204 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~la~g~~d------------------------------------  204 (458)
                      .+..||..+.++..+.. ..........+ ..-+++..++|+.+                                    
T Consensus        86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (346)
T TIGR03547        86 DVYRYDPKKNSWQKLDTRSPVGLLGASGF-SLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY  164 (346)
T ss_pred             cEEEEECCCCEEecCCCCCCCcccceeEE-EEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence            58889998887755432 11111111111 12467778888754                                    


Q ss_pred             ---CeEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeCC
Q 012679          205 ---CQVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGMD  245 (458)
Q Consensus       205 ---g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~d  245 (458)
                         ..|.+||..+.+-..  .+..........+..++.+++.|+.+
T Consensus       165 ~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~  210 (346)
T TIGR03547       165 FWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI  210 (346)
T ss_pred             CccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence               468899987764322  22210112233345578888888754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=92.89  E-value=9  Score=38.61  Aligned_cols=138  Identities=14%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             EEEEEECCCCCeeeEEEecCCCC--CEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeE--EecC-C-CcccEE
Q 012679          162 TVYLWDASDGTTSELVTVDDENG--PVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLR--TLRG-G-HRSRVG  230 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~--~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~--~~~~-~-~~~~v~  230 (458)
                      .+++||..+.++..+........  ........-++.+.+.|+.++     .+.+||+.+.+-..  .+.. . ......
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~  273 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS  273 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence            58899998877643221100010  111111122556667776543     58889988765332  1110 0 111223


Q ss_pred             EEEeCCCeEEEEeCCC-----cEEEEEccCCCeeEEEEc----ccccceEeEEEcCCCCEEEEEECC----CcEEEEeCC
Q 012679          231 SLAWNNHILTTGGMDG-----LIINNDVRVRDHIVETYR----GHNQEVCGLKWSASGQQLASGGND----NLLHIWDRS  297 (458)
Q Consensus       231 ~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~----~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~  297 (458)
                      ....++.+++.|+.++     .+..||+.+..-......    ...... .+.. -++++++.++.+    +.+.+||+.
T Consensus       274 ~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~  351 (470)
T PLN02193        274 MAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPV  351 (470)
T ss_pred             EEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECC
Confidence            3345677888887654     467788776542111100    001111 1221 267777777755    458899987


Q ss_pred             CCCC
Q 012679          298 MASS  301 (458)
Q Consensus       298 ~~~~  301 (458)
                      +..-
T Consensus       352 t~~W  355 (470)
T PLN02193        352 QDKW  355 (470)
T ss_pred             CCEE
Confidence            6543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.85  E-value=7.6  Score=35.65  Aligned_cols=196  Identities=12%  Similarity=0.054  Sum_probs=117.5

Q ss_pred             CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc-cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCC
Q 012679          225 HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN-QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS  303 (458)
Q Consensus       225 ~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~  303 (458)
                      -..-+..+.+.+++...+..+.-+++.|+.+...+...-.-.. +--.++.  -.|++...+..|.-+.+.|+...+.+.
T Consensus        85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence            4456677888899999999999999999998775433221112 2333333  468888888877788899998876632


Q ss_pred             cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679          304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      .   .-++......-..++.+-  +.-.++.   .|+-+.+.|+.+.   ..+...+.+..+.++..+++..+++.    
T Consensus       163 l---agrya~~~~d~~~v~ISG--n~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv----  230 (370)
T COG5276         163 L---AGRYALPGGDTHDVAISG--NYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV----  230 (370)
T ss_pred             e---eeeeccCCCCceeEEEec--CeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE----
Confidence            2   233333333334556653  4444443   7888999998764   34556666767888888888777776    


Q ss_pred             CCCcEEEEeCCCceeeEEEe--CCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          381 TQNQLTLWKYPSMVKMAELS--GHTSR--VLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~--~h~~~--V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      -+.-+.+-|....+....+.  ....+  ++.+..  -+++...+..+.-+.+-|+.++.
T Consensus       231 y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         231 YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             cccceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCC
Confidence            23446666665544222221  11111  222233  24444445555555555555443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.83  E-value=0.013  Score=56.42  Aligned_cols=130  Identities=18%  Similarity=0.286  Sum_probs=91.2

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      .....|-+.+.-+++++.+-.|..||-.. +......  .+.....++|+  + ..++.+-..+.+.+||+.+.......
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            34456788777799998998899998443 3332332  55666778885  3 45666778899999999765421111


Q ss_pred             Ec-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          263 YR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       263 ~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      +. .|....  +.|++.+..++.|...|.+.|++......      +.....|...+.+++|.+.
T Consensus       114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~------iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen  114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR------IIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             ccCcchHHH--HhhccCCccccccccccceEEEeccchhh------hhhhcccccceeEEEeccc
Confidence            11 122222  78999999999999999999999777655      4445458999999999984

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.70  E-value=4  Score=40.32  Aligned_cols=100  Identities=12%  Similarity=0.085  Sum_probs=55.5

Q ss_pred             ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      .-.|..+..++.|..++.+|   .+|.+.++=.+....-..++.+.+ |+|-.+. -+..+++.                
T Consensus       103 ~feV~~vl~s~~GS~VaL~G---~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~-i~~~~fts----------------  162 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIG---IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTP-VAERFFTS----------------  162 (741)
T ss_pred             eEEEEEEEecCCCceEEEec---CCeeEEEEchhhcCccceecCCCceEEEEeec-ccceeecc----------------
Confidence            34577888899887777776   577655543232222222222222 2222222 11222211                


Q ss_pred             eeeEEEeCCCCcEEEEEEcCCC---CEEEEEeCCCcEEEEecCCCCccccc
Q 012679          394 VKMAELSGHTSRVLFMAQSPDG---CTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg---~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                            . ..-.+..++|+|+.   ..|+.-+.|.+||+|++.....+...
T Consensus       163 ------s-~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  163 ------S-TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             ------C-CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence                  1 12235677888864   56777788999999999888777543

>PHA02790 Kelch-like protein; Provisional

Probab=92.62  E-value=5.9  Score=40.05  Aligned_cols=131  Identities=8%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC---eEEEEeCCCceeeEE--ecCCCcccEEEEEeC
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC---QVQLWDSTANRQLRT--LRGGHRSRVGSLAWN  235 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg---~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~  235 (458)
                      ..+..||..++++..+..+.........+.  -+|+..++|+.++   .+..||..+++-...  +.. .......+..+
T Consensus       331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~  407 (480)
T PHA02790        331 TSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFG  407 (480)
T ss_pred             CceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-ccccceEEEEC
Confidence            467888887777755544442222222222  3677778877654   477898876653321  221 11222344567


Q ss_pred             CCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 012679          236 NHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMA  299 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~  299 (458)
                      +.+.+.|+   .+.+||.++..... ..+....... +++. -+++..+.||.+     ..|.+||..+.
T Consensus       408 ~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        408 RRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            77777774   57789987665321 1111111122 2222 267778888754     34556665543

>PRK13684 Ycf48-like protein; Provisional

Probab=92.58  E-value=10  Score=36.32  Aligned_cols=233  Identities=10%  Similarity=0.067  Sum_probs=112.2

Q ss_pred             ccccceeeccCCCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ++.++.+.+..+..++++..+.|+.-+ +.| ....+..-....+....+....++..+++ +..|.|..= ...++.-.
T Consensus        89 ~~~l~~v~~~~~~~~~~G~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S-~DgG~tW~  165 (334)
T PRK13684         89 NFRLISISFKGDEGWIVGQPSLLLHTT-DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRT-TDGGKNWE  165 (334)
T ss_pred             ccceeeeEEcCCcEEEeCCCceEEEEC-CCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEE-CCCCCCce
Confidence            345666777666666777666655432 222 33222110001111222222222333333 344444322 22344333


Q ss_pred             EecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCC-CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVR-DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+...-...+.++.+. +..++..+..|.+..- .+.+ ..-......-...+.++.+.++++.+++| ..|.+++=...
T Consensus       166 ~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        166 ALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             eCcCCCcceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence            3333244567777774 3445555556655432 1112 21122222345678899999999877765 45766532222


Q ss_pred             CCCCCCcceeeee-ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCCC
Q 012679          298 MASSNSVTQWLHR-LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNER  372 (458)
Q Consensus       298 ~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~  372 (458)
                      .+..-   +.+.. .......+.++++.|+ ..+++++   .+|.+.. ....|+.-....    .......+.|..+++
T Consensus       244 ~G~sW---~~~~~~~~~~~~~l~~v~~~~~-~~~~~~G---~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~  315 (334)
T PRK13684        244 DLESW---SKPIIPEITNGYGYLDLAYRTP-GEIWAGG---GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK  315 (334)
T ss_pred             CCCcc---ccccCCccccccceeeEEEcCC-CCEEEEc---CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence            32220   00000 0011235678889885 4466655   5665543 334444333322    123577788887777


Q ss_pred             eEEEEecCCCCcEEEEe
Q 012679          373 ELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd  389 (458)
                      .+++  | ..|.|..|+
T Consensus       316 ~~~~--G-~~G~il~~~  329 (334)
T PRK13684        316 GFVL--G-QRGVLLRYV  329 (334)
T ss_pred             eEEE--C-CCceEEEec
Confidence            7665  4 567766654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.54  E-value=4.4  Score=40.09  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=52.3

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETY  263 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~  263 (458)
                      .|..|..++.|..++..+.+|.+..+=......-..+.. ....|+|=.+. +..|++.+                    
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-gk~~v~CRt~~i~~~~ftss--------------------  163 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-GKSTVNCRTTPVAERFFTSS--------------------  163 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC-CCceEEEEeecccceeeccC--------------------
Confidence            477888899999999999998655443222222222222 22223332221 11111111                    


Q ss_pred             cccccceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCC
Q 012679          264 RGHNQEVCGLKWSASG---QQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       264 ~~h~~~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                        ..-.+..++|+|+.   ..|..-+.|+.|++||+.....
T Consensus       164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence              11234556788853   6777778888888888776543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.46  E-value=0.8  Score=28.27  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679          325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW  367 (458)
Q Consensus       325 p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~  367 (458)
                      |+++.++++..  .++.|.++|..+++.+..+..+.....++|
T Consensus         1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            56777888765  688999999999999988887665555555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.41  E-value=0.7  Score=28.89  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCC
Q 012679          316 SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       316 ~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      ++|.++.|+|...  .+|+..-  .-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence            4689999998555  6777765  678999999995

It contains a characteristic DLL sequence motif.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.35  E-value=7.6  Score=34.42  Aligned_cols=141  Identities=15%  Similarity=0.195  Sum_probs=83.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEec-C---------CeEEEEeCCCceeeEEecCCCcccEEEEEeCC---CeEEEEeCCCcEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLN-N---------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN---HILTTGGMDGLII  249 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~-d---------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~  249 (458)
                      ......-..+|+|++. .|.. |         |.++.|-..  ..+..+.. .-.--+.++|+.   .+.++-+.+-.|.
T Consensus       108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeeh-hccCCccccccccCcEEEEEccCceEEe
Confidence            3456667789999984 4432 2         334444321  11222221 222335678852   3455566677787


Q ss_pred             EEE--ccCCCe----eEEEEcc----cccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccccee
Q 012679          250 NND--VRVRDH----IVETYRG----HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK  319 (458)
Q Consensus       250 vwd--~~~~~~----~~~~~~~----h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  319 (458)
                      -||  ..++..    .+..++.    ....--+++...+|++.+++-+.++|...|..+++.      +..+.-....|+
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~------L~eiklPt~qit  257 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI------LLEIKLPTPQIT  257 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE------EEEEEcCCCceE
Confidence            777  444321    1112211    112233556677899999999999999999999987      777777788999


Q ss_pred             EEEecCCCCcEEEE
Q 012679          320 AIAWCPFQSNLLAT  333 (458)
Q Consensus       320 ~l~~~p~~~~ll~s  333 (458)
                      +++|---+-.++++
T Consensus       258 sccFgGkn~d~~yv  271 (310)
T KOG4499|consen  258 SCCFGGKNLDILYV  271 (310)
T ss_pred             EEEecCCCccEEEE
Confidence            99996533344443

>PLN02153 epithiospecifier protein

Probab=92.32  E-value=11  Score=36.14  Aligned_cols=139  Identities=12%  Similarity=0.078  Sum_probs=71.2

Q ss_pred             CEEEEEECCCCCeeeEEEecC---CCCCEEEEEEcCCCCEEEEEecC-----------CeEEEEeCCCceeeEEecC---
Q 012679          161 STVYLWDASDGTTSELVTVDD---ENGPVTSVNWAPDGRHIAIGLNN-----------CQVQLWDSTANRQLRTLRG---  223 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~---h~~~V~~v~~s~~g~~la~g~~d-----------g~v~iwd~~~~~~~~~~~~---  223 (458)
                      ..+.+||..+.++..+..+..   ........+..-++++.+.|+.+           ..|.+||..+.+-...-..   
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~  180 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN  180 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence            368899998887765543311   01111222222356667777653           2578889877653321110   


Q ss_pred             -CCcccEEEEEeCCCeEEEEeCC-------------CcEEEEEccCCCeeEEEEcc--c-ccceEeEEEcCCCCEEEEEE
Q 012679          224 -GHRSRVGSLAWNNHILTTGGMD-------------GLIINNDVRVRDHIVETYRG--H-NQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       224 -~~~~~v~~l~~~~~~l~sg~~d-------------g~i~vwd~~~~~~~~~~~~~--h-~~~v~~l~~spd~~~l~sg~  286 (458)
                       ..........+++++++.|+.+             ..+.+||+.+..-......+  . .....++. ..++++++.|+
T Consensus       181 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG  259 (341)
T PLN02153        181 FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGG  259 (341)
T ss_pred             CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECc
Confidence             0112223445677777766532             35888998776532111111  0 11111222 22567778887


Q ss_pred             CC--------------CcEEEEeCCCCC
Q 012679          287 ND--------------NLLHIWDRSMAS  300 (458)
Q Consensus       287 ~d--------------g~i~iwd~~~~~  300 (458)
                      ..              +.|..+|+.+..
T Consensus       260 ~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        260 EVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             ccCCccccccccccccccEEEEEcCccE
Confidence            52              257778876554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.30  E-value=2.4  Score=41.47  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---CC-----------------
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NN-----------------  236 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~~-----------------  236 (458)
                      ..+......+.++..+|++++.|+...=|.|.|+|+.++..++..++--...+.-+.-   ..                 
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence            3445556679999999999999998888999999999999888877632332222221   11                 


Q ss_pred             CeEEEEeCCCcEEEEEccCCCe
Q 012679          237 HILTTGGMDGLIINNDVRVRDH  258 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~  258 (458)
                      -+++-+-.-|.|-||.++.+.+
T Consensus       381 ~LvIyaprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQGPR  402 (415)
T ss_pred             EEEEEeccCCeEEEEecCCCCE
Confidence            1344456678888888887665

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.30  E-value=12  Score=36.50  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=28.1

Q ss_pred             EEEeCCCeEEEEeCCC-----------cEEEEEccCCCeeEEEEccc-ccce--EeEEEcCCCCEEEEEECC
Q 012679          231 SLAWNNHILTTGGMDG-----------LIINNDVRVRDHIVETYRGH-NQEV--CGLKWSASGQQLASGGND  288 (458)
Q Consensus       231 ~l~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~~h-~~~v--~~l~~spd~~~l~sg~~d  288 (458)
                      .+..++.+.+.|+...           .+..||..+...  ..+... ....  .+....-++++.+.|+.+
T Consensus        80 ~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W--~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW--QKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             EEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE--EeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            3445677777776532           467788776542  111110 1111  111211467777888754

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.23  E-value=2.4  Score=41.72  Aligned_cols=137  Identities=16%  Similarity=0.207  Sum_probs=85.9

Q ss_pred             EEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEeCCC-ceeeEEecC---CC
Q 012679          157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR-------HIAIGLNNCQVQLWDSTA-NRQLRTLRG---GH  225 (458)
Q Consensus       157 ~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~-------~la~g~~dg~v~iwd~~~-~~~~~~~~~---~~  225 (458)
                      ++....++-.|++.|++  +-...-|.. | -|.|.|+.+       .-++|-.+..|.-.|.+- |..+.....   ..
T Consensus       486 g~~~~kLykmDIErGkv--veeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t  561 (776)
T COG5167         486 GGERDKLYKMDIERGKV--VEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT  561 (776)
T ss_pred             CCCcccceeeeccccee--eeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence            33446788889999988  444444444 3 677887532       234566665665556543 222222210   01


Q ss_pred             cccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 012679          226 RSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       226 ~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~  299 (458)
                      .....|..- ...++++|+..|.|++||-- +......+.+....|..+..+.+|+++++.+. ..+.+-|+...
T Consensus       562 Kn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik  634 (776)
T COG5167         562 KNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK  634 (776)
T ss_pred             cccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence            122222222 46899999999999999953 33334567778889999999999998877665 57777776543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.13  E-value=8.7  Score=40.18  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             eeEEEecCC-CCcEEEEeCCCCCCeEEEEECCC-------C-------------CeeEEEeCCCCeEEEEEc--CCCCeE
Q 012679          318 VKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHT-------G-------------ACLNSVDTGSQVCALLWN--KNEREL  374 (458)
Q Consensus       318 v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~-------~-------------~~~~~~~~~~~v~~~~~s--~~~~~l  374 (458)
                      |..|..... +..+|+.+.  .||.|.+|.+.+       .             ++...+..+...++++++  ...+.|
T Consensus       103 IN~i~v~~lg~~EVLl~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            444444333 234555555  899999997521       0             123344556778999998  777888


Q ss_pred             EEEecCCCCcEEEEeCCCc--eeeE-EEeCCCCcEEEEEEcCCC-----C-EEEEEeCCCcEEEEec
Q 012679          375 LSSHGFTQNQLTLWKYPSM--VKMA-ELSGHTSRVLFMAQSPDG-----C-TVASAAADETLRFWNV  432 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~--~~~~-~~~~h~~~V~~l~~spdg-----~-~l~s~s~Dg~i~iW~~  432 (458)
                      +++  .....|.||-+...  +... .-..|...|-+|+|-++.     . +|++++-.|.+.+|++
T Consensus       181 AVS--sNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVS--SNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEe--cCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            774  35667777665432  1111 011255668888887633     2 7888899999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.13  E-value=2.5  Score=46.29  Aligned_cols=139  Identities=15%  Similarity=0.219  Sum_probs=85.4

Q ss_pred             EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEe--------cCCCCcEEEEeCCCCCCeEEEEEC----CCCCe
Q 012679          285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW--------CPFQSNLLATGGGGGDRCIKFWNT----HTGAC  352 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~p~~~~ll~s~~g~~d~~i~lwd~----~~~~~  352 (458)
                      .+.|+.+.+|++++...      ...+.+-...|..+..        -|.-.++|+.+.   --.|.++-+    .++..
T Consensus        95 iTiDn~L~lWny~~~~e------~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~  165 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNE------LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGEL  165 (1311)
T ss_pred             EEeCCeEEEEEcCCCCc------cccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCcc
Confidence            45788999999998655      4455555555544443        333345555542   334544432    22211


Q ss_pred             e-----EEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC--C------cee--------------eEEEe-CCC
Q 012679          353 L-----NSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP--S------MVK--------------MAELS-GHT  403 (458)
Q Consensus       353 ~-----~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~--~------~~~--------------~~~~~-~h~  403 (458)
                      -     .++.. +..|.++....+|+.+++  | .||.|+=.-+.  .      ..+              +..+. .+.
T Consensus       166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~--G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~  242 (1311)
T KOG1900|consen  166 SIFNTSFKISVDGVSVNCITYTENGRIFFA--G-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK  242 (1311)
T ss_pred             cccccceeeecCCceEEEEEeccCCcEEEe--e-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence            1     12222 566889998889998887  4 45644322221  1      111              11223 566


Q ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          404 SRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       404 ~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ++|..++.......+.+-+..|+|.+|++...
T Consensus       243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            79999999988889999999999999999873

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.12  E-value=5.3  Score=32.10  Aligned_cols=121  Identities=13%  Similarity=0.092  Sum_probs=72.8

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCCCCC--cceeeeeecccccceeEEEecC----CCCcEEEEeCCCCCCeEEEEE
Q 012679          273 LKWSASGQQLASGGNDNLLHIWDRSMASSNS--VTQWLHRLEEHTSAVKAIAWCP----FQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p----~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      -.|.....-|+.++.-|.|.|++........  ....+..+ .-...|++|+-.+    ++..+|+.|   ....|..||
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaYD   79 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYD   79 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEE
Confidence            4565566678888999999999876543211  01112222 3355677776554    245677777   477899999


Q ss_pred             CCCCCeeEEEeCCCCeEEEEEcC---CCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          347 THTGACLNSVDTGSQVCALLWNK---NERELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       347 ~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      +....-+...+....+.++.+-.   ....++.. | .+..|.-||....+...+.
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcEEEEEe
Confidence            99887666656666677766632   22333333 3 2455666666555554443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.98  E-value=9.6  Score=34.78  Aligned_cols=142  Identities=9%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             cEEEEEe--CCCeEEEEe---CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe-CCCCCC
Q 012679          228 RVGSLAW--NNHILTTGG---MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-RSMASS  301 (458)
Q Consensus       228 ~v~~l~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd-~~~~~~  301 (458)
                      .+.+.+.  ++..++...   ....++++...  ......+.  ...+....|++++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            4555555  566555544   33345555443  32222222  23788889999988877777677777764 223322


Q ss_pred             CCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC---CCC------eeEEE-eCCCCeEEEEEcC
Q 012679          302 NSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH---TGA------CLNSV-DTGSQVCALLWNK  369 (458)
Q Consensus       302 ~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~---~~~------~~~~~-~~~~~v~~~~~s~  369 (458)
                      .     .......  ...|.++.++|++..+++......++.|.+=-+.   .+.      .+... .....+..+.|.+
T Consensus       101 ~-----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  101 E-----PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             e-----eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            1     1111111  1289999999999998887643345777766443   231      11111 1245789999999


Q ss_pred             CCCeEEEEe
Q 012679          370 NERELLSSH  378 (458)
Q Consensus       370 ~~~~l~~~~  378 (458)
                      ++..++...
T Consensus       176 ~~~L~V~~~  184 (253)
T PF10647_consen  176 DSTLVVLGR  184 (253)
T ss_pred             CCEEEEEeC
Confidence            998887754

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.88  E-value=18  Score=37.61  Aligned_cols=168  Identities=12%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccE------EEEEe--CCCeEEEEeC-CC---cE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRV------GSLAW--NNHILTTGGM-DG---LI  248 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v------~~l~~--~~~~l~sg~~-dg---~i  248 (458)
                      .+.|-.|.|.++++.+++...+|.|++||...+.  .+..+...+...+      .....  ...++++.+. ++   ..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5679999999999999999999999999993332  2113332233222      22221  1345554444 32   35


Q ss_pred             EEEEccCCCeeEEEEc---ccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec
Q 012679          249 INNDVRVRDHIVETYR---GHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC  324 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~---~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  324 (458)
                      +++.+......+..+.   .+........|.. +|.+..-  .++.|.+|++...+..........+......+.++. .
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~  285 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P  285 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence            6666622221122221   1122222233332 4544333  677999999876654211111001111112233332 2


Q ss_pred             CCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       325 p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      |....++.+    .+..|++.|+.-...+.+++
T Consensus       286 ~s~nRvLLs----~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  286 PSPNRVLLS----VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             CCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence            233455555    57899999998777666665

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.58  E-value=15  Score=36.17  Aligned_cols=221  Identities=10%  Similarity=0.111  Sum_probs=113.3

Q ss_pred             CCCEEEEEecCCeEEEEeCCCce-----eeEEecCCCcccEEEEEeC------CCeEEEEeCCCcEEEEEccCCC-----
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGHRSRVGSLAWN------NHILTTGGMDGLIINNDVRVRD-----  257 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~~------~~~l~sg~~dg~i~vwd~~~~~-----  257 (458)
                      +...|++|+..|.++||+...+.     .+-+..  -..+|..+...      ....++.=.-..+.+|.+....     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            34689999999999999985443     222222  55678777762      2233333455677777773221     


Q ss_pred             ---eeEEEEcccccc--eEeEEEcC----C-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          258 ---HIVETYRGHNQE--VCGLKWSA----S-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       258 ---~~~~~~~~h~~~--v~~l~~sp----d-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                         ..+.....|.-.  ...+++-|    . ..+|.+-+-||.+.+|+-+....      ...+.. ---.-.+++++..
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f------~~~lp~-~llPgPl~Y~~~t  186 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF------SRFLPD-FLLPGPLCYCPRT  186 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE------EEEcCC-CCCCcCeEEeecC
Confidence               112222233222  22222222    2 35788889999999999665432      122221 1122346777754


Q ss_pred             CcEEEEeCCCCCCeEEEEECCC--------------------CC---eeEEEeCCCCeEEEE---EcCCCCeEEEEecCC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHT--------------------GA---CLNSVDTGSQVCALL---WNKNERELLSSHGFT  381 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~--------------------~~---~~~~~~~~~~v~~~~---~s~~~~~l~~~~g~~  381 (458)
                      ..+++ ++  .+..+..|....                    ++   +-.++..+.++..+.   ++.....+++.+   
T Consensus       187 Dsfvt-~s--ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg---  260 (418)
T PF14727_consen  187 DSFVT-AS--SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG---  260 (418)
T ss_pred             CEEEE-ec--CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe---
Confidence            44444 33  566777765421                    11   223344455544443   333334444432   


Q ss_pred             CCcEEEEeCCCceeeEEEeCCCCcEEEEE-E----cCCC---CEEEEEeCCCcEEEEe
Q 012679          382 QNQLTLWKYPSMVKMAELSGHTSRVLFMA-Q----SPDG---CTVASAAADETLRFWN  431 (458)
Q Consensus       382 d~~i~iwd~~~~~~~~~~~~h~~~V~~l~-~----spdg---~~l~s~s~Dg~i~iW~  431 (458)
                      ...+.+.+.. |......+ ......+++ |    ..++   ..++.++.++++.||.
T Consensus       261 er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~  316 (418)
T PF14727_consen  261 ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE  316 (418)
T ss_pred             cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence            4556666653 33322222 222222222 1    1122   2477788999988875

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.32  E-value=15  Score=35.75  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             CCEEEEEECCC--CCeeeEEEecCC-CCCEEEEEEcCCCCEEEEEecC-----------CeEEEEeCCCceeeEEec-CC
Q 012679          160 GSTVYLWDASD--GTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLNN-----------CQVQLWDSTANRQLRTLR-GG  224 (458)
Q Consensus       160 d~~v~iwd~~~--~~~~~~~~~~~h-~~~V~~v~~s~~g~~la~g~~d-----------g~v~iwd~~~~~~~~~~~-~~  224 (458)
                      +..+.++|+..  .++..+..+... ......+  .-++.+.+.|+.+           ..+..||..+.+-...-. ..
T Consensus        49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v--~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p  126 (376)
T PRK14131         49 GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA--FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSP  126 (376)
T ss_pred             CCeEEEEECCCCCCCeEECCcCCCCCcccceEE--EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCC
Confidence            35678888763  445444333211 1111222  2356677777643           247788887654332111 10


Q ss_pred             Cc-ccEEEEE-eCCCeEEEEeCC
Q 012679          225 HR-SRVGSLA-WNNHILTTGGMD  245 (458)
Q Consensus       225 ~~-~~v~~l~-~~~~~l~sg~~d  245 (458)
                      .. .....+. .++.+.+.|+.+
T Consensus       127 ~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131        127 VGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CcccceEEEEeeCCEEEEECCCC
Confidence            11 1122333 477888888764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.24  E-value=14  Score=35.11  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=55.3

Q ss_pred             EEEEeCCCeEEEEeCCC-----cEEEEEccCCCee--EEEEcccccce--EeEEEcCCCCEEEEEEC-----CCcEEEEe
Q 012679          230 GSLAWNNHILTTGGMDG-----LIINNDVRVRDHI--VETYRGHNQEV--CGLKWSASGQQLASGGN-----DNLLHIWD  295 (458)
Q Consensus       230 ~~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~--~~~~~~h~~~v--~~l~~spd~~~l~sg~~-----dg~i~iwd  295 (458)
                      .++..++.+++.|+.++     .+..+|+.+....  ...+..-..+.  .+++. -++++.+.|+.     ...+..||
T Consensus        67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd  145 (323)
T TIGR03548        67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFN  145 (323)
T ss_pred             EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence            34555777778887653     5667777655421  11211111111  11222 25667777774     24678888


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC----eEEEEECCCCCee
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR----CIKFWNTHTGACL  353 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~----~i~lwd~~~~~~~  353 (458)
                      +.+..-..    +..+... ......+.. .+..+++.|+  .++    .+..||..+.+-.
T Consensus       146 ~~~~~W~~----~~~~p~~-~r~~~~~~~-~~~~iYv~GG--~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       146 LETQEWFE----LPDFPGE-PRVQPVCVK-LQNELYVFGG--GSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCCCCeeE----CCCCCCC-CCCcceEEE-ECCEEEEEcC--CCCccccceEEEecCCCeeE
Confidence            87654321    1111110 111111111 1456777765  332    3568888876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.88  E-value=11  Score=33.17  Aligned_cols=108  Identities=17%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             CeEEEEeCCCcEEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCC------cEEEE---eCCCCCCCCc--
Q 012679          237 HILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDN------LLHIW---DRSMASSNSV--  304 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg------~i~iw---d~~~~~~~~~--  304 (458)
                      +.|+.+...+.|.+|++.... .....+.. -+.|..+.++..|++|++--.++      .+++|   +.........  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            666666777889999998443 23344433 47899999999999999864322      45554   3221111000  


Q ss_pred             ---------------cee--eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          305 ---------------TQW--LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       305 ---------------~~~--~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                                     ...  +..+ .-..++.+++-+|..+++++.    .++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEE
Confidence                           000  0111 123467899999988888875    4678999987643

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.81  E-value=8  Score=37.67  Aligned_cols=146  Identities=12%  Similarity=0.142  Sum_probs=86.6

Q ss_pred             EEEeC-CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee
Q 012679          231 SLAWN-NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW  307 (458)
Q Consensus       231 ~l~~~-~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  307 (458)
                      .+-|+ .+..+.+.+.|.+.-|.+....  .++..-....++|.++.||+|.+.||+--.|+.|.+++....+...  ..
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l--~~  104 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL--EY  104 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh--HH
Confidence            34443 3444444455556666554332  1222223446699999999999999999999999999975443311  11


Q ss_pred             eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSVD-TGSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       308 ~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                      .++.+..+..|....|... ..+...    .+.-+-+|-+...+ .++.++ ....|.-..|.++.+.++.++|-..+
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i----~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n  177 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFI----TDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN  177 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEE----ecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccc
Confidence            2233344556888999875 333333    24446666554322 222222 34567788888888888777653333

>PLN02153 epithiospecifier protein

Probab=90.59  E-value=16  Score=34.90  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=37.7

Q ss_pred             EEEEEeCCCeEEEEeCC-----CcEEEEEccCCCee-EEEEcc---ccc-ceEeEEEcCCCCEEEEEECC----------
Q 012679          229 VGSLAWNNHILTTGGMD-----GLIINNDVRVRDHI-VETYRG---HNQ-EVCGLKWSASGQQLASGGND----------  288 (458)
Q Consensus       229 v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~-~~~~~~---h~~-~v~~l~~spd~~~l~sg~~d----------  288 (458)
                      ...+.+++.+++.|+.+     ..+.+||+.+..-. +..+..   ... .-.+++ .-++++++.|+.+          
T Consensus        79 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~  157 (341)
T PLN02153         79 VRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPER  157 (341)
T ss_pred             eEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcc
Confidence            34456678888888754     25778888765421 111100   001 111222 2356677777753          


Q ss_pred             -CcEEEEeCCCCC
Q 012679          289 -NLLHIWDRSMAS  300 (458)
Q Consensus       289 -g~i~iwd~~~~~  300 (458)
                       ..|.+||..+..
T Consensus       158 ~~~v~~yd~~~~~  170 (341)
T PLN02153        158 FRTIEAYNIADGK  170 (341)
T ss_pred             cceEEEEECCCCe
Confidence             247778877654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.59  E-value=17  Score=34.92  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=29.7

Q ss_pred             EEEEeCCCeEEEEeCC-----------CcEEEEEccCCCeeEEEEc-ccccceEeE-EE-cCCCCEEEEEECC
Q 012679          230 GSLAWNNHILTTGGMD-----------GLIINNDVRVRDHIVETYR-GHNQEVCGL-KW-SASGQQLASGGND  288 (458)
Q Consensus       230 ~~l~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~-~h~~~v~~l-~~-spd~~~l~sg~~d  288 (458)
                      .....++.+.+.|+.+           ..+..||+.+..-.  ... .......+. .. .-++++.+.|+.+
T Consensus        58 ~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~--~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        58 VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ--KLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe--cCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            3445577888888753           24677887765421  111 111111111 11 2477788888764

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.32  E-value=1.6  Score=38.84  Aligned_cols=76  Identities=9%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec--------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679          275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE--------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      +..++.+|++.+.+|.+++||+...+.......+..+-        .....|..+....+|.-++. -   .+|..+.||
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-l---sng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-L---SNGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-E---eCCCEEEec
Confidence            34578899999999999999999876532221111111        34566778888865554443 3   457778888


Q ss_pred             CCCCCeeE
Q 012679          347 THTGACLN  354 (458)
Q Consensus       347 ~~~~~~~~  354 (458)
                      ..-+.-+.
T Consensus        94 ~~L~~W~~  101 (219)
T PF07569_consen   94 PDLGCWIR  101 (219)
T ss_pred             cccceeEE
Confidence            76554443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.74  E-value=13  Score=32.42  Aligned_cols=170  Identities=15%  Similarity=0.100  Sum_probs=95.4

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCe
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHI  238 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~  238 (458)
                      ...|++||+.+|+......+..  ..+..=-...-|.++ +..-.+|.-.++|..+.+++..+.  ..+.-..++.++..
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--y~GeGWgLt~d~~~  142 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--YEGEGWGLTSDDKN  142 (262)
T ss_pred             cceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--cCCcceeeecCCcc
Confidence            3589999999998744444431  111111111123333 334568888999999999888887  66777888888877


Q ss_pred             EEEEeCCCcEEEEEccCCCe---eEEEEccc-ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc------eee
Q 012679          239 LTTGGMDGLIINNDVRVRDH---IVETYRGH-NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT------QWL  308 (458)
Q Consensus       239 l~sg~~dg~i~vwd~~~~~~---~~~~~~~h-~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~------~~~  308 (458)
                      |+.++...++..-|.++-..   +..+..+. -..++.+.|- ||...|-.=.+..|...|..+++...-.      ..+
T Consensus       143 LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~  221 (262)
T COG3823         143 LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKEL  221 (262)
T ss_pred             eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhc
Confidence            88887777888777654321   11112111 1122334442 4444443333333444444433321000      001


Q ss_pred             eeecccccceeEEEecCCCCcEEEEe
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      ..-..|..-.+.+|+.|++..++++|
T Consensus       222 ~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         222 NLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CccccccccccceeecCcCCeEEEec
Confidence            11223455678899999888888886

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=89.71  E-value=25  Score=35.75  Aligned_cols=246  Identities=11%  Similarity=0.089  Sum_probs=114.5

Q ss_pred             CCeEEEEcCCEEEEEECCCCCe-eeEEEecCCCCCEEEEEEcCCC-CEEEEEecCC--eEEEEeCCCceeeEEecCCCcc
Q 012679          152 SNVLAIALGSTVYLWDASDGTT-SELVTVDDENGPVTSVNWAPDG-RHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRS  227 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg--~v~iwd~~~~~~~~~~~~~~~~  227 (458)
                      ..++.+..+|.++...+..... ..+..+..-....+++.+..+| .+|++|+.-|  .+.-|....-+.+..+.  .-+
T Consensus       223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~--N~~  300 (504)
T PF10433_consen  223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP--NWG  300 (504)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE------
T ss_pred             CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc--CcC
Confidence            4577888889988887664331 1122221103345666666554 4777787655  45555544555666666  667


Q ss_pred             cEEEEEeC------CC------eEEEEe---CCCcEEEEEccCCCe-eEEEEccc--ccceEeEEEcC-CCCEEEEEECC
Q 012679          228 RVGSLAWN------NH------ILTTGG---MDGLIINNDVRVRDH-IVETYRGH--NQEVCGLKWSA-SGQQLASGGND  288 (458)
Q Consensus       228 ~v~~l~~~------~~------~l~sg~---~dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~l~~sp-d~~~l~sg~~d  288 (458)
                      +|..++.-      ..      .|++++   .+|.+++..-.-+-. ........  -..+..+.... ++.+|+.+..+
T Consensus       301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~  380 (504)
T PF10433_consen  301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN  380 (504)
T ss_dssp             SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred             CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence            88888871      11      555553   467787764321111 01111111  23344444322 25577666654


Q ss_pred             CcEEEEeCCC---CCCCCcceeee--eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCC
Q 012679          289 NLLHIWDRSM---ASSNSVTQWLH--RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQ  361 (458)
Q Consensus       289 g~i~iwd~~~---~~~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~  361 (458)
                      . -+++.+..   ...   ...+.  .+......+.+-.+.  +..++=+    ....|++.+...++.......  +..
T Consensus       381 ~-T~vl~~~~~d~~e~---~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~  450 (504)
T PF10433_consen  381 E-TRVLQISEGDDGEE---VEEVEEDGFDTDEPTLAAGNVG--DGRIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSI  450 (504)
T ss_dssp             E-EEEEEES----SSE---EEEE---TS-SSS-EEEEEEET--TTEEEEE----ESSEEEEEESSSTSEEEEEE-TTS--
T ss_pred             c-eEEEEEecccCCcc---hhhhhhccCCCCCCCeEEEEcC--CCeEEEE----ecCeEEEEECCCCeEEEEEeCCCCCe
Confidence            3 44555431   111   00000  121122223222222  2333322    245788998888887776644  334


Q ss_pred             eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-C----CCCcEEEEEEcC
Q 012679          362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-G----HTSRVLFMAQSP  413 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-~----h~~~V~~l~~sp  413 (458)
                      |.+.+.+  +..++++.  .++.+..+.+.......... .    ....|.|+...|
T Consensus       451 I~~a~~~--~~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  451 IVAASIN--DPQVLVAL--SGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             -SEEEES--SSEEEEEE---TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEEEC--CCEEEEEE--eCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            5544443  34455433  47788888887665543322 1    457788888766

...

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.17  E-value=23  Score=34.40  Aligned_cols=203  Identities=13%  Similarity=0.110  Sum_probs=101.2

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc--
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS--  227 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~--  227 (458)
                      ..+.+++...+|.|.-.|.+++...-...+......+.+-.+..+|+ |++++.+|.+..+|..+++.+..... ...  
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~-~~~~~  144 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNV-GGSPY  144 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEec-CCCeE
Confidence            34667777788888888888887421111111011122222222666 78888999999999989998888875 331  


Q ss_pred             cEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccc--ccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCC
Q 012679          228 RVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGH--NQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNS  303 (458)
Q Consensus       228 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~  303 (458)
                      ...........+..++.+|.+...|..++......-..-  ...+..-....++ .+..+..  ++.+.-.|...+....
T Consensus       145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEee
Confidence            111111123445555577888888877666432211110  1111111111233 3334433  4556666665555421


Q ss_pred             cceeeeeecccccceeEEEecC----CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679          304 VTQWLHRLEEHTSAVKAIAWCP----FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG  359 (458)
Q Consensus       304 ~~~~~~~~~~h~~~v~~l~~~p----~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~  359 (458)
                      ........ +.......-.+..    .+..+.+ +  ..++.+...|..+|+.+..+...
T Consensus       224 ~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~~~~-~--~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         224 SQKVSQTI-GRTAISTTPAVDGGPVYVDGGVYA-G--SYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeeeccc-CcccccccccccCceEEECCcEEE-E--ecCCeEEEEEcCCCceEEEEecc
Confidence            11100111 1110000000000    0122222 2  26777999999999999888764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.92  E-value=4.7  Score=39.15  Aligned_cols=163  Identities=18%  Similarity=0.129  Sum_probs=96.1

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-EEecCCCc----ccEE-EEE--eCCCeEEEEeCCCcEEE
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-RTLRGGHR----SRVG-SLA--WNNHILTTGGMDGLIIN  250 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-~~~~~~~~----~~v~-~l~--~~~~~l~sg~~dg~i~v  250 (458)
                      +..-...|..+-..|||+.|.+-+. ..+.|+++.+.... +++-....    ..|+ .+.  -.+.-|+.++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4444567888889999999888766 58888887654321 12211111    1222 111  13567889999999987


Q ss_pred             E-EccCCCe----eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          251 N-DVRVRDH----IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       251 w-d~~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      | |++....    .++.++-...++.-+.-..+.+-+++-+..|++.++.....+.      + -+..--..+.-++++|
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~------l-L~~~~~~~~~~~~~Sp  367 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL------L-LFERAYQAPQLVAMSP  367 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc------e-ehhhhhcCcceeeeCc
Confidence            7 5554332    1222222223444343333455677777888888776444332      1 1112223566789999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      ++.+++.-    ..|.|+++.+.+..+.
T Consensus       368 ~~~~Ll~e----~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         368 NQAYLLSE----DQGKIRLAQLENRNPE  391 (733)
T ss_pred             ccchheee----cCCceEEEEecCCCCC
Confidence            98888764    5678999988775543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=88.45  E-value=5.7  Score=29.57  Aligned_cols=42  Identities=10%  Similarity=-0.039  Sum_probs=32.2

Q ss_pred             CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEec
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g  379 (458)
                      .+|.+.-||..+++....++.-.-.+.++.++++..++++-.
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            678889999999887666666667899999999999988754

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.18  E-value=22  Score=33.04  Aligned_cols=219  Identities=11%  Similarity=0.156  Sum_probs=125.2

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCC------Cc-eeeEEecC----CCcccEEEEEeCC--------------CeE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDST------AN-RQLRTLRG----GHRSRVGSLAWNN--------------HIL  239 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~------~~-~~~~~~~~----~~~~~v~~l~~~~--------------~~l  239 (458)
                      .-+.|+++|.+.+-++....+...+||..      .. ..+.++..    ......+.+.|++              ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999999877777788899999986      12 23333331    0234566677741              236


Q ss_pred             EEEeCCCcEEEEEccCCCe----eEEEEc-ccccc-eEeEEEcC--CCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeee
Q 012679          240 TTGGMDGLIINNDVRVRDH----IVETYR-GHNQE-VCGLKWSA--SGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       240 ~sg~~dg~i~vwd~~~~~~----~~~~~~-~h~~~-v~~l~~sp--d~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      +.+++||+|.-|.......    ....+. +.... -..+++..  .+.+|..+ -..++|.|+|-.-......    ..
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~----g~  179 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP----GS  179 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC----CC
Confidence            7889999999998643322    112221 11222 34555543  24555444 3578899998543321100    00


Q ss_pred             ecccccceeEEEecCC-----CCcEEEEeC-----------CCCCCeEEEEECCCCCeeEEEeCCCC---eEEEEEcC--
Q 012679          311 LEEHTSAVKAIAWCPF-----QSNLLATGG-----------GGGDRCIKFWNTHTGACLNSVDTGSQ---VCALLWNK--  369 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~-----~~~ll~s~~-----------g~~d~~i~lwd~~~~~~~~~~~~~~~---v~~~~~s~--  369 (458)
                      +....  | -.-|.|.     +..|+++-.           |..-|.|-++|+ .|..++.+.....   .+.++..|  
T Consensus       180 F~DP~--i-PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       180 FIDPA--L-PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             ccCCC--C-CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence            10000  0 0011110     122332211           234578999997 5778887765543   45566644  


Q ss_pred             ----CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC------cEEEEEEcC
Q 012679          370 ----NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS------RVLFMAQSP  413 (458)
Q Consensus       370 ----~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~------~V~~l~~sp  413 (458)
                          .+..|+-  .+.||+|..||..+++.+..+....+      .++.|+|..
T Consensus       256 FG~~sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       256 FGSLSGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hCCCCCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                3455555  55699999999999998888875443      356777764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.16  E-value=11  Score=34.88  Aligned_cols=89  Identities=20%  Similarity=0.394  Sum_probs=56.8

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe------cCCeEEEEeCCCceeeEEecC----CCcccEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL------NNCQVQLWDSTANRQLRTLRG----GHRSRVG  230 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~------~dg~v~iwd~~~~~~~~~~~~----~~~~~v~  230 (458)
                      ..|++||..+.++....  .+-.+.|+++.|..+.+.++.|.      ....+..||..+... ..+..    .-.++|.
T Consensus        16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence            47999999988874433  23467899999997777777764      345788999887653 23332    1346788


Q ss_pred             EEEe---CCC-eEEEEe-CCC--cEEEEE
Q 012679          231 SLAW---NNH-ILTTGG-MDG--LIINND  252 (458)
Q Consensus       231 ~l~~---~~~-~l~sg~-~dg--~i~vwd  252 (458)
                      .+.+   +.. +.+.|. .+|  .|..||
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEc
Confidence            8887   443 444443 233  345554

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.95  E-value=43  Score=36.15  Aligned_cols=163  Identities=15%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             ccccceEeEEEc---C----CCCEEEEEECCCcEEEEeCCCCCC---------CCcceeeeeecc---cccceeEEEecC
Q 012679          265 GHNQEVCGLKWS---A----SGQQLASGGNDNLLHIWDRSMASS---------NSVTQWLHRLEE---HTSAVKAIAWCP  325 (458)
Q Consensus       265 ~h~~~v~~l~~s---p----d~~~l~sg~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~---h~~~v~~l~~~p  325 (458)
                      ....+|..|+|.   .    ..++|++= ....+.|+...-...         .....++..+..   ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            345677778877   2    22355443 445677776221111         011122333332   234677899999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCCCC------ee------EEE-e---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHTGA------CL------NSV-D---TGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~~~------~~------~~~-~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      +...-+|.-.  ..|...||++..+.      ..      ..+ .   ..+....+.|.++...|+++   +...+.++|
T Consensus       156 ~~~~q~AiVD--~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---~r~~l~~~d  230 (765)
T PF10214_consen  156 WDQRQFAIVD--EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---NRSKLMLID  230 (765)
T ss_pred             CccceEEEEe--ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE---cCCceEEEE
Confidence            8888888776  88999999992111      10      111 0   11234588898888888875   467899999


Q ss_pred             CCCceeeE--EEeCCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEecCCC
Q 012679          390 YPSMVKMA--ELSGHTSRVLFMAQSPD--GCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       390 ~~~~~~~~--~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +.+.....  ........|..+.-+|+  +..++-.+  ..|...++...
T Consensus       231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~  278 (765)
T PF10214_consen  231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS  278 (765)
T ss_pred             CCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence            98776533  12234577999999887  33333322  56777777764

These proteins are found in fungi.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.81  E-value=23  Score=32.89  Aligned_cols=206  Identities=13%  Similarity=0.122  Sum_probs=113.9

Q ss_pred             EEEEEeC--CCeEEEEeCCCcEEEEEcc------CCCeeEEEEcc-----cccceEeEEEcCCCC------------EEE
Q 012679          229 VGSLAWN--NHILTTGGMDGLIINNDVR------VRDHIVETYRG-----HNQEVCGLKWSASGQ------------QLA  283 (458)
Q Consensus       229 v~~l~~~--~~~l~sg~~dg~i~vwd~~------~~~~~~~~~~~-----h~~~v~~l~~spd~~------------~l~  283 (458)
                      -+.|+++  +.+-++....+...+||..      ..+.++..+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3456665  3556666667888999986      22333444432     234577788875332            367


Q ss_pred             EEECCCcEEEEeCCCCCCCCcceeeeeeccc-ccc-eeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeE--EE-
Q 012679          284 SGGNDNLLHIWDRSMASSNSVTQWLHRLEEH-TSA-VKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLN--SV-  356 (458)
Q Consensus       284 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~-v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~-  356 (458)
                      .+++||+|.=|............ ...+... ... -+.+++..  .+..|.++--  ..++|.++|-.-.+...  .+ 
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~-~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRA-EIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             EEeCCceEEeecCcCCccccccc-EEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCcc
Confidence            78899999999854333200000 1122211 122 34555553  3456666655  78999999865332210  01 


Q ss_pred             ----eCC----------CC--eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcC-----
Q 012679          357 ----DTG----------SQ--VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSP-----  413 (458)
Q Consensus       357 ----~~~----------~~--v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~sp-----  413 (458)
                          ..+          ..  |+-..-.++.+.=+.  |-..|.|-+||.. +..+..+.  +.-...+.|+..|     
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~--G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA--GAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCccccccc--CCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence                000          00  111112222222222  4446789999974 55555552  3335567788866     


Q ss_pred             -CCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          414 -DGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       414 -dg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                       .|.+|+--=.||+|..+|..++...-.
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~  286 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQLGQ  286 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCceeee
Confidence             567777666799999999887765443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.41  E-value=14  Score=29.81  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=64.4

Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCc--------eeeEEecCCCcccEEEEEe---C----CCeEEEEeCCCcEEEEE
Q 012679          188 SVNWAPDGRHIAIGLNNCQVQLWDSTAN--------RQLRTLRGGHRSRVGSLAW---N----NHILTTGGMDGLIINND  252 (458)
Q Consensus       188 ~v~~s~~g~~la~g~~dg~v~iwd~~~~--------~~~~~~~~~~~~~v~~l~~---~----~~~l~sg~~dg~i~vwd  252 (458)
                      .-.|......|++++.-|+|.|++....        ..++.+.  -...|++|+-   .    ...|+.|+. ..+..||
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            3456666667899999999999987533        2344444  4566777754   2    366777665 5688999


Q ss_pred             ccCCCeeEEEEcccccceEeEEEc---CCCCEEEEEECCCcEEEEeCCC
Q 012679          253 VRVRDHIVETYRGHNQEVCGLKWS---ASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +.....+  .++.-...|.++.+-   ....-|+..+.+..|.-||...
T Consensus        80 V~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   80 VENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             cccCchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            9866542  223334556666652   2223344444446677676544

>PLN02193 nitrile-specifier protein

Probab=87.37  E-value=35  Score=34.43  Aligned_cols=156  Identities=8%  Similarity=0.011  Sum_probs=72.4

Q ss_pred             CCCEEEEEecC-------CeEEEEeCCCceeeEEecC---CCc--ccEEEEEeCCCeEEEEeCCC-----cEEEEEccCC
Q 012679          194 DGRHIAIGLNN-------CQVQLWDSTANRQLRTLRG---GHR--SRVGSLAWNNHILTTGGMDG-----LIINNDVRVR  256 (458)
Q Consensus       194 ~g~~la~g~~d-------g~v~iwd~~~~~~~~~~~~---~~~--~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~  256 (458)
                      ++..++.|+.+       ..+.+||+.+.+-...-..   ...  .....+..++.+++.|+.++     .+.+||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            45566666643       2477888877653321110   011  12233455777888887653     5788888765


Q ss_pred             CeeE-EEEc--ccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          257 DHIV-ETYR--GHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       257 ~~~~-~~~~--~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .... ....  .....-.++.. -++++++.|+.++     .+..||+.+..-.....+ ............+.+   +.
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~---~g  329 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVV---QG  329 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEE---CC
Confidence            4311 1110  00111112222 2566677777543     466777765432110000 000000111111222   24


Q ss_pred             cEEEEeCCC--CCCeEEEEECCCCCeeE
Q 012679          329 NLLATGGGG--GDRCIKFWNTHTGACLN  354 (458)
Q Consensus       329 ~ll~s~~g~--~d~~i~lwd~~~~~~~~  354 (458)
                      .+++.++..  .-..+.+||+.+.+...
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W~~  357 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQ  357 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEEEE
Confidence            566665411  12468999998876544

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.11  E-value=15  Score=34.04  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE------CCCcEEEEeCCCCCCCCcceeeeeecc-----c
Q 012679          246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG------NDNLLHIWDRSMASSNSVTQWLHRLEE-----H  314 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h  314 (458)
                      ..|++||....+. ...-.+-.+.|..+.|..+.++++.|.      ....+..||......       ..+..     -
T Consensus        16 ~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-------~~~~~~~s~~i   87 (281)
T PF12768_consen   16 PGLCLYDTDNSQW-SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-------SSLGGGSSNSI   87 (281)
T ss_pred             CEEEEEECCCCEe-ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-------eecCCcccccC
Confidence            4689999876653 233334567899999987777777664      355688899877653       12222     2


Q ss_pred             ccceeEEEecC-CCCcEEEEeC-CCCCCeEEEEECCCCCeeEE--EeCCCCeEEEEEc
Q 012679          315 TSAVKAIAWCP-FQSNLLATGG-GGGDRCIKFWNTHTGACLNS--VDTGSQVCALLWN  368 (458)
Q Consensus       315 ~~~v~~l~~~p-~~~~ll~s~~-g~~d~~i~lwd~~~~~~~~~--~~~~~~v~~~~~s  368 (458)
                      .++|..+.+.. +...+.+.|. ...+..|..||-.+...+..  +.....|..+.+-
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            46787877743 3445655543 12344577887665554443  2223445555443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.11  E-value=2.4  Score=41.01  Aligned_cols=169  Identities=15%  Similarity=0.077  Sum_probs=91.3

Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-cc-ccccee-EEEecCCCCcEEEEeCCC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EE-HTSAVK-AIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-h~~~v~-~l~~~p~~~~ll~s~~g~  337 (458)
                      +.+..-...|..+-..|||+.|..-+. ..+.|+++.+...... + +... .+ ....|+ ++..-.-+..+++ ++  
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-k-l~~dspg~~~~~Vte~l~lL~Gg~SLLv-~~--  287 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-K-LVDDSPGDSRHQVTEQLYLLSGGFSLLV-VH--  287 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-h-hhhcCCCchHHHHHHHHHHHhCceeEEE-Ec--
Confidence            334445567788889999998877665 7888998876544211 0 1111 11 001122 1111222334444 33  


Q ss_pred             CCCeEEEE-ECCCCCe-----eEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679          338 GDRCIKFW-NTHTGAC-----LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA  410 (458)
Q Consensus       338 ~d~~i~lw-d~~~~~~-----~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~  410 (458)
                      .||-|.-| |.+.+..     ++.++. +.++..+.-..+.+-+++  =+.+|++.++.....+.+.. +.-...+..++
T Consensus       288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~--l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~  364 (733)
T COG4590         288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYS--LYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVA  364 (733)
T ss_pred             CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEE--EcCCCceeeeecccCcceeh-hhhhcCcceee
Confidence            78888777 5544321     111221 233333333333344444  33677777766544333321 11223566789


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          411 QSPDGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       411 ~spdg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      +||++.+|++- ..|.++++.+.+..+..
T Consensus       365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei  392 (733)
T COG4590         365 MSPNQAYLLSE-DQGKIRLAQLENRNPEI  392 (733)
T ss_pred             eCcccchheee-cCCceEEEEecCCCCCc
Confidence            99999999854 55789999998765543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.53  E-value=11  Score=41.66  Aligned_cols=141  Identities=11%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             ecCCeEEEEeCCCceeeEEecCCCcccEEEEEe---CC-------CeEEEEeCCCcEEEEEccCCCe--eEE------EE
Q 012679          202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NN-------HILTTGGMDGLIINNDVRVRDH--IVE------TY  263 (458)
Q Consensus       202 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~~-------~~l~sg~~dg~i~vwd~~~~~~--~~~------~~  263 (458)
                      +.|..+.+|+.+++.....+.+ ....|..+..   .+       .+++.-+.--.|.++-+.-...  ...      .+
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            4577899999999887777776 6667766665   11       2333333444555554432211  011      12


Q ss_pred             cccccceEeEEEcCCCCEEEEEECCCcEEEEeCC----CCC----CC----------Ccceeeeeec-ccccceeEEEec
Q 012679          264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS----MAS----SN----------SVTQWLHRLE-EHTSAVKAIAWC  324 (458)
Q Consensus       264 ~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~----~~~----~~----------~~~~~~~~~~-~h~~~v~~l~~~  324 (458)
                      ......|.++....+|+.|.+| .||.  +|.+.    .+=    +.          .....+..+. .+..+|..++..
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            2235578899988888877766 4553  44321    110    00          0001122333 567799999998


Q ss_pred             CCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          325 PFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       325 p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      . ...++.+-+  ..++|.+||+..
T Consensus       252 ~-SR~IlY~ls--ek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 N-SRNILYVLS--EKGTVSAYDIGG  273 (1311)
T ss_pred             c-ccceeeeec--cCceEEEEEccC
Confidence            7 577777765  899999999976

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.08  E-value=19  Score=37.14  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             CCCeEEEEeCCCcEEEEEccC---C-CeeEEEE-cc--------------------cccceEeEEEcC----CCCEEEEE
Q 012679          235 NNHILTTGGMDGLIINNDVRV---R-DHIVETY-RG--------------------HNQEVCGLKWSA----SGQQLASG  285 (458)
Q Consensus       235 ~~~~l~sg~~dg~i~vwd~~~---~-~~~~~~~-~~--------------------h~~~v~~l~~sp----d~~~l~sg  285 (458)
                      ++..++.+..||.+.......   . ....... ..                    ....+..++++.    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            677888888888887777654   1 1111111 10                    123455566666    67888899


Q ss_pred             ECCCcEEEEeCCCCCC
Q 012679          286 GNDNLLHIWDRSMASS  301 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~  301 (458)
                      +.|+.+++||+.++..
T Consensus       237 ~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQC  252 (547)
T ss_dssp             ETTSEEEEEETTTTCE
T ss_pred             eCCCeEEEEECCCCeE
Confidence            9999999999888766

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.66  E-value=25  Score=38.07  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=80.8

Q ss_pred             CEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCC-cccEEEEEeCCCe
Q 012679          161 STVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH-RSRVGSLAWNNHI  238 (458)
Q Consensus       161 ~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~-~~~v~~l~~~~~~  238 (458)
                      |.++.|+.- .|+...+..-..-.+.|.  +..|.+.++.+|-.+ .+++||+...+.++.....+ ...|..+.|.+..
T Consensus       912 g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~LagvG~-~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~R  988 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAGVGR-FLRLYDLGKKKLLRKCELKFIPNRISSIQTYGAR  988 (1205)
T ss_pred             CceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEeccc-EEEEeeCChHHHHhhhhhccCceEEEEEeecceE
Confidence            457777643 333222221112234444  445656677766544 89999999888877665434 7889999999999


Q ss_pred             EEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          239 LTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       239 l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      ++.|...-.+..+-.+........+..  -...|+++.+- |...+|.|..=|.+.+-.+.
T Consensus       989 I~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  989 IVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            999987666665555443332333332  23456666654 55567777766666665543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.15  E-value=35  Score=32.43  Aligned_cols=164  Identities=14%  Similarity=0.165  Sum_probs=92.0

Q ss_pred             ccceEeEEEcCCCCEEEEEECCCc------EEEEeCCCCCC-CC--cceeeeeeccccc--------ceeEEEecCCCCc
Q 012679          267 NQEVCGLKWSASGQQLASGGNDNL------LHIWDRSMASS-NS--VTQWLHRLEEHTS--------AVKAIAWCPFQSN  329 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~dg~------i~iwd~~~~~~-~~--~~~~~~~~~~h~~--------~v~~l~~~p~~~~  329 (458)
                      -+.+.+|.+.+++..+++.+.+|.      +..+++..... ..  .......+....+        ...+|++.++ ..
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~-g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD-GS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-CC
Confidence            356788889876667777777777      66666554111 00  0000111111111        3457888554 45


Q ss_pred             EEEEeCCCCC------CeEEEEECCCCCeeEEEe----------------CCCCeEEEEEcCCCCeEEEEecCC---CC-
Q 012679          330 LLATGGGGGD------RCIKFWNTHTGACLNSVD----------------TGSQVCALLWNKNERELLSSHGFT---QN-  383 (458)
Q Consensus       330 ll~s~~g~~d------~~i~lwd~~~~~~~~~~~----------------~~~~v~~~~~s~~~~~l~~~~g~~---d~-  383 (458)
                      ++++.-  .+      ..|..++.. |+.+..+.                .+...-+++++|+|+.|+++.-..   |+ 
T Consensus        98 ~~is~E--~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   98 FWISSE--GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             EEEEeC--CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            555543  44      678888866 66554442                223477999999999766654221   21 


Q ss_pred             --------cEEEEeC--CC-ceeeEE----EeC-----CCCcEEEEEEcCCCCEEEEEe-----CCCcEEEEecCC
Q 012679          384 --------QLTLWKY--PS-MVKMAE----LSG-----HTSRVLFMAQSPDGCTVASAA-----ADETLRFWNVFG  434 (458)
Q Consensus       384 --------~i~iwd~--~~-~~~~~~----~~~-----h~~~V~~l~~spdg~~l~s~s-----~Dg~i~iW~~~~  434 (458)
                              .++|+.+  .+ +....+    +..     ....|..+.+-+++++|+.==     ....++|+.+.-
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence                    1555544  33 222222    222     346788999999999776432     244666766653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.96  E-value=39  Score=32.74  Aligned_cols=186  Identities=15%  Similarity=0.198  Sum_probs=103.6

Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc----CCCCE--EEEEEC-C---CcEEEEeCCCCCCCCcce
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS----ASGQQ--LASGGN-D---NLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s----pd~~~--l~sg~~-d---g~i~iwd~~~~~~~~~~~  306 (458)
                      .+++....++-+.+||+....  +..+.  .+.++.+..-    -+|+.  |+.+++ +   +.|++|.+......    
T Consensus        69 SlIigTdK~~GL~VYdL~Gk~--lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~----  140 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGKE--LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE----  140 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-E--EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE----
T ss_pred             ceEEEEeCCCCEEEEcCCCcE--EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc----
Confidence            577778888999999997543  34443  2333333321    13433  444443 2   57999977542210    


Q ss_pred             eeeeecc-------cccceeEEEe--cCC-CCcEEEEeCCCCCCeEEEEECC---CC----CeeEEEeCCCCeEEEEEcC
Q 012679          307 WLHRLEE-------HTSAVKAIAW--CPF-QSNLLATGGGGGDRCIKFWNTH---TG----ACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       307 ~~~~~~~-------h~~~v~~l~~--~p~-~~~ll~s~~g~~d~~i~lwd~~---~~----~~~~~~~~~~~v~~~~~s~  369 (458)
                       +..+..       ....+..+|+  +|. +...+....  .+|.+..|.+.   .+    +.++.+...+++..+....
T Consensus       141 -L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD  217 (381)
T PF02333_consen  141 -LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD  217 (381)
T ss_dssp             -EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET
T ss_pred             -ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec
Confidence             222211       1223566665  443 333444443  78888777664   33    3688888999999999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCC-----CceeeEEEeC--CCCcEEEEEEc--CCC--CEEEEEeCCCcEEEEecCCC
Q 012679          370 NERELLSSHGFTQNQLTLWKYP-----SMVKMAELSG--HTSRVLFMAQS--PDG--CTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~-----~~~~~~~~~~--h~~~V~~l~~s--pdg--~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ....|+.  |.++--|.-|+..     ..+.+....+  ....|-.|++-  ++|  -+|+|.-.+++..||+-...
T Consensus       218 e~g~LYv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  218 ETGRLYV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TTTEEEE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ccCCEEE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999998  5466556666654     1233433333  34567777774  343  34455556889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.82  E-value=5.5  Score=24.31  Aligned_cols=41  Identities=10%  Similarity=0.044  Sum_probs=28.7

Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      |+++.++++. ..++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~-~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTN-SGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEe-CCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677777764 36889999999998888877653 22334544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.70  E-value=42  Score=32.92  Aligned_cols=111  Identities=9%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679          267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGDRCIKF  344 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l  344 (458)
                      ...+.++.|.+++..++++ .+|.+.. ....+..-.... ......  ....+.++.+.++ ..++++|   ..|.+..
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~-f~~~~~~~~~~~l~~v~~~~d-~~~~a~G---~~G~v~~  352 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD-FEEADIKSRGFGILDVGYRSK-KEAWAAG---GSGILLR  352 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc-eeecccCCCCcceEEEEEcCC-CcEEEEE---CCCcEEE
Confidence            4568899999998877665 5565543 322322100000 111111  2235888989875 5667766   5776655


Q ss_pred             EECCCCCeeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679          345 WNTHTGACLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLW  388 (458)
Q Consensus       345 wd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw  388 (458)
                      .. ..|+.-....    .......+.|.++++-+++  | .+|.|.-|
T Consensus       353 s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~  396 (398)
T PLN00033        353 ST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY  396 (398)
T ss_pred             eC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence            53 3444323222    2456789999888777776  4 56666544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.66  E-value=7.9  Score=32.97  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=25.6

Q ss_pred             CcEEEEEEcCC------CCEEEEEeCCCcEEEEecCC
Q 012679          404 SRVLFMAQSPD------GCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       404 ~~V~~l~~spd------g~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ..|.+++|||-      +.+|++.+.+|.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            47899999994      35788889999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.58  E-value=4.6  Score=24.40  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecC---CeEEEE
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNN---CQVQLW  210 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~d---g~v~iw  210 (458)
                      ....-....|+|||++|+.++..   |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            35567889999999998877654   555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.16  E-value=8.9  Score=39.50  Aligned_cols=73  Identities=12%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             cCCCeEEEEcCCEEEEEECCC----CCeeeEEEecC--------------------CCCCEEEEEEcC----CCCEEEEE
Q 012679          150 GSSNVLAIALGSTVYLWDASD----GTTSELVTVDD--------------------ENGPVTSVNWAP----DGRHIAIG  201 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~----~~~~~~~~~~~--------------------h~~~V~~v~~s~----~g~~la~g  201 (458)
                      ++..++.+..||.+.......    +.......+..                    ....+..++.+.    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            557777777888877776553    21111111111                    124466677776    77899999


Q ss_pred             ecCCeEEEEeCCCceeeEEec
Q 012679          202 LNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       202 ~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +.|+.+++||+.+++++.+..
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEec
Confidence            999999999999999977654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=83.99  E-value=1.5  Score=46.07  Aligned_cols=111  Identities=15%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             CeEEEEeCCCceeeEEecCCCcccEEEEEe-C---CCeEEEEeCCCcEEEEEccCCC------eeEEEEcccccceEeEE
Q 012679          205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAW-N---NHILTTGGMDGLIINNDVRVRD------HIVETYRGHNQEVCGLK  274 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~---~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~~h~~~v~~l~  274 (458)
                      +.+++-+..+...-..+..+..+.|..+.| +   +...   -.-|.+.|||+..-+      ..+.........+.-+.
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            345555544332222333335666777776 1   1211   333677888875321      11222223333445555


Q ss_pred             EcC---CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          275 WSA---SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       275 ~sp---d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      |.|   +.-++..+-.++.|++..++....       ..+..|...+..++|-.
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-------~l~rsHs~~~~d~a~~~  234 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-------SLFRSHSQRVTDMAFFA  234 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-------HHHHhcCCCcccHHHHh
Confidence            555   667778888888888877654432       23445776666666544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.26  E-value=31  Score=30.21  Aligned_cols=173  Identities=12%  Similarity=0.152  Sum_probs=90.5

Q ss_pred             CCCEEEEEecC--CeEEEEeCCCceeeEEecCCCcccEEE---EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc
Q 012679          194 DGRHIAIGLNN--CQVQLWDSTANRQLRTLRGGHRSRVGS---LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ  268 (458)
Q Consensus       194 ~g~~la~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~v~~---l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~  268 (458)
                      +|.++.+.+.-  ..|++||+.+++.+...... ...+..   ..+......-.-.+|.-..+|.++-+.+ ..+ ...+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~l-g~~-~y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEEL-GRF-SYEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhh-ccc-ccCC
Confidence            45555554433  37999999999887766532 111111   1112223333445777788888765432 211 1233


Q ss_pred             ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      +-.+++  .|+..|+.+....+++.-|..+.......  ..++.+ .-..++.+.|-.  ..++|---  .+..|...|.
T Consensus       132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v--~VT~~g~pv~~LNELE~Vd--G~lyANVw--~t~~I~rI~p  203 (262)
T COG3823         132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTV--QVTDDGVPVSKLNELEWVD--GELYANVW--QTTRIARIDP  203 (262)
T ss_pred             cceeee--cCCcceEeeCCceEEEecCHHHhhhcceE--EEEECCeecccccceeeec--cEEEEeee--eecceEEEcC
Confidence            344444  46666777666667777776554432111  111111 112233444443  33333222  4455666777


Q ss_pred             CCCCeeEEEeCC-------------CCeEEEEEcCCCCeEEEE
Q 012679          348 HTGACLNSVDTG-------------SQVCALLWNKNERELLSS  377 (458)
Q Consensus       348 ~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~~  377 (458)
                      .+|+.+..++..             .-.+.+++.|++..++.+
T Consensus       204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence            788777666421             236788999988666654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=82.16  E-value=54  Score=32.21  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      ...+..++|+.+++.+.....++-||--...-      ...-......+.++.|.+++..+++.    .+|.+ +|....
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W------~~~~~~~~~~l~~v~~~~dg~l~l~g----~~G~l-~~S~d~  309 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW------QPHNRASARRIQNMGWRADGGLWLLT----RGGGL-YVSKGT  309 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcce------EEecCCCccceeeeeEcCCCCEEEEe----CCceE-EEecCC
Confidence            44456678888777776554444455322110      11112234567899999876655543    45554 344444


Q ss_pred             CC-----eeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE---eCCCCcEEEEEEcCCCCEE
Q 012679          350 GA-----CLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL---SGHTSRVLFMAQSPDGCTV  418 (458)
Q Consensus       350 ~~-----~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~---~~h~~~V~~l~~spdg~~l  418 (458)
                      ++     .......   ...+..+.|.+++..+++  | ..|.+.... ..++.-...   ..-......+.|.++++-+
T Consensus       310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~  385 (398)
T PLN00033        310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF  385 (398)
T ss_pred             CCcccccceeecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE
Confidence            43     2233322   234888999988887766  4 466555543 333322222   2234567889988776666


Q ss_pred             EEEeCCCcEEEE
Q 012679          419 ASAAADETLRFW  430 (458)
Q Consensus       419 ~s~s~Dg~i~iW  430 (458)
                      + .+.+|.|.-|
T Consensus       386 ~-~G~~G~il~~  396 (398)
T PLN00033        386 V-LGNDGVLLRY  396 (398)
T ss_pred             E-EeCCcEEEEe
Confidence            5 5577877654

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=81.80  E-value=81  Score=34.02  Aligned_cols=189  Identities=19%  Similarity=0.213  Sum_probs=104.9

Q ss_pred             CCeEEEEcCCEEEEEEC-CCCCeeeEE-----EecCCCCCEEEEEEc--CCCCEEEEEecC---CeEEEEeCCC--c---
Q 012679          152 SNVLAIALGSTVYLWDA-SDGTTSELV-----TVDDENGPVTSVNWA--PDGRHIAIGLNN---CQVQLWDSTA--N---  215 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~-~~~~~~~~~-----~~~~h~~~V~~v~~s--~~g~~la~g~~d---g~v~iwd~~~--~---  215 (458)
                      .-++++...|.|.+|-. .+++.....     .+......|+..++.  .+|+.+++++.+   +.|++|.+.-  +   
T Consensus        63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~  142 (753)
T PF11635_consen   63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP  142 (753)
T ss_pred             eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence            45899999999999987 344443332     122235567766665  567666665555   6788875321  1   


Q ss_pred             -----eeeEEec-----C------C-----------CcccEEEEEe-C--------CCeEEEEeC----CCcEEEEEccC
Q 012679          216 -----RQLRTLR-----G------G-----------HRSRVGSLAW-N--------NHILTTGGM----DGLIINNDVRV  255 (458)
Q Consensus       216 -----~~~~~~~-----~------~-----------~~~~v~~l~~-~--------~~~l~sg~~----dg~i~vwd~~~  255 (458)
                           +..-.+.     .      .           .-..++.+.| .        +.++++.+.    ...|.-|.++.
T Consensus       143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence                 0000110     0      0           1124555655 1        245555442    34789998876


Q ss_pred             CCeeEEEE--------------------c-----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc----e
Q 012679          256 RDHIVETY--------------------R-----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT----Q  306 (458)
Q Consensus       256 ~~~~~~~~--------------------~-----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~----~  306 (458)
                      ....+...                    .     .....|.++....-+..++..-.||+|.++|-.+.+.....    .
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~  302 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE  302 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence            43221111                    0     12345777777777889999999999999997776432111    1


Q ss_pred             eee---eec------ccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679          307 WLH---RLE------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIK  343 (458)
Q Consensus       307 ~~~---~~~------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~  343 (458)
                      ...   .+.      .+...+..++|+|.+..++...   .++.+.
T Consensus       303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~---~~~~~~  345 (753)
T PF11635_consen  303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID---EDGKTK  345 (753)
T ss_pred             CccccccccccccccccCCCCceEEECcccceEEEEe---cCCCce
Confidence            111   110      1112344688999766666554   566644

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=81.78  E-value=71  Score=33.37  Aligned_cols=243  Identities=11%  Similarity=0.127  Sum_probs=123.8

Q ss_pred             EEcCCCCEEEEEecCCeEEEEeC-CCceeeEEecCCCcccEEEEEe----C-CCeEEEEeCCCc-EEEEEccCC------
Q 012679          190 NWAPDGRHIAIGLNNCQVQLWDS-TANRQLRTLRGGHRSRVGSLAW----N-NHILTTGGMDGL-IINNDVRVR------  256 (458)
Q Consensus       190 ~~s~~g~~la~g~~dg~v~iwd~-~~~~~~~~~~~~~~~~v~~l~~----~-~~~l~sg~~dg~-i~vwd~~~~------  256 (458)
                      .++|+.+.+-.|=....|.-|=+ .+.+.+..+.-.....|.|+..    + ..+.+.|-.++. -++--+..+      
T Consensus        34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~  113 (670)
T PF10395_consen   34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED  113 (670)
T ss_pred             ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence            56677776666655555555544 3567777766556666777766    1 234444433332 232222211      


Q ss_pred             ----C--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC-----
Q 012679          257 ----D--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-----  325 (458)
Q Consensus       257 ----~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-----  325 (458)
                          .  .....+ .-...|.++.|.++++.+++...+|.|.+||..........+ +.  ..+...+.-=.|-+     
T Consensus       114 ~~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~-l~--~~~~~~v~ys~fv~~~~~~  189 (670)
T PF10395_consen  114 GTVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ-LK--LKSSINVSYSKFVNDFELE  189 (670)
T ss_pred             cccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc-cc--cccccceehhhhhcccccc
Confidence                0  001111 135678899999999999999999999999993332211110 00  01111111102222     


Q ss_pred             CCCc-EEEEeC-CCCCCeEEEEEC-CCCCeeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679          326 FQSN-LLATGG-GGGDRCIKFWNT-HTGACLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE  398 (458)
Q Consensus       326 ~~~~-ll~s~~-g~~d~~i~lwd~-~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~  398 (458)
                      ++.. +++.+. ....-+.+++.+ .....+..+.    .........|.-+...+..-   .++.|.+|++++.+...+
T Consensus       190 ~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l---~~~~i~~ysip~f~~~~t  266 (670)
T PF10395_consen  190 NGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL---SKKTISSYSIPNFQIQKT  266 (670)
T ss_pred             cCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE---eCCEEEEEEcCCceEEEE
Confidence            2223 333332 112346778887 1222222222    12222333333333333332   578999999999887766


Q ss_pred             EeCC-----C-CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          399 LSGH-----T-SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       399 ~~~h-----~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      +.-.     . ..+.++.--...+.|+  +.+..|++.|+.-.....+.
T Consensus       267 I~l~~ii~~~~~~~vSl~~~s~nRvLL--s~~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  267 ISLPSIIDKESDDLVSLKPPSPNRVLL--SVNNKIYLLDLKFESILSEF  313 (670)
T ss_pred             EEechhhccccccceEeecCCCCeEEE--EcCCEEEEEeehhhhhhhhh
Confidence            5422     1 2233333222334444  35678999998655444443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=81.71  E-value=82  Score=34.06  Aligned_cols=117  Identities=12%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             ccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc----------ccceeEEEecCCCCcEEEEeC
Q 012679          267 NQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH----------TSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       267 ~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ..+...++|+| +.+.||+....|...|||+.......... +.....+          ...-..+.|.++...+|++  
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~--  221 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC--  221 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCCccccCCCcccCcceeeEecCCCCEEEEE--
Confidence            34677899998 56799999999999999992221111101 1111111          1233478898877777775  


Q ss_pred             CCCCCeEEEEECCCCCeeE---EEeCCCCeEEEEEcCC--CCeEEEEecCCCCcEEEEeCCC
Q 012679          336 GGGDRCIKFWNTHTGACLN---SVDTGSQVCALLWNKN--ERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~---~~~~~~~v~~~~~s~~--~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                        ....+.++|+.+.....   .......|..+.-++.  +..++.+    ...|...++..
T Consensus       222 --~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT----s~eiiw~~~~~  277 (765)
T PF10214_consen  222 --NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT----SKEIIWLDVKS  277 (765)
T ss_pred             --cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe----cCeEEEEEccC
Confidence              56789999999876533   2233456778887777  3333332    35677777665

These proteins are found in fungi.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.36  E-value=83  Score=33.35  Aligned_cols=220  Identities=12%  Similarity=0.208  Sum_probs=104.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-----CCcccEEEEEeCCC-eEEEEeCCCcEEEEEccCC
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-----GHRSRVGSLAWNNH-ILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----~~~~~v~~l~~~~~-~l~sg~~dg~i~vwd~~~~  256 (458)
                      .+.|-..+||.|.+.+++...+..|.+++-.- ..+....-     ..-+.-..+.|... .-+- +..-...+-|..-.
T Consensus       112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~f-d~ise~~L~~~dl~ef~khi~VgWgkketqfr-gk~~raqlrdptmp  189 (1243)
T COG5290         112 SNGIVAASWSADEKTWCVVTSTREILLFDKYF-DPISEYHLKKSDLVEFGKHIRVGWGKKETQFR-GKGARAQLRDPTMP  189 (1243)
T ss_pred             cCceEEEeeccCCceEEEEEcCceEEEEeccc-cccchhhcchhHHHHhccceEeeecccchhcc-ccchhhhccCCCCc
Confidence            56789999999999888888888898887321 11111110     01112233444210 0000 00001112221111


Q ss_pred             Cee-EEEEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          257 DHI-VETYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       257 ~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      ..+ ...+..-...-.-+.|--|..+.+.+...    ..+++|.-.. .......      ...+.-..+.|-|.|..+.
T Consensus       190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg-~lds~se------p~~g~e~~LSWkpqgS~~a  262 (1243)
T COG5290         190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREG-QLDSASE------PVTGMEHQLSWKPQGSKYA  262 (1243)
T ss_pred             ccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecccc-ccccccC------CcccchhccccccCCceee
Confidence            000 00000001111235666677776666532    3455665321 1111111      1122234589999765554


Q ss_pred             EEeCC-C-CCCeEEEEECC---CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE
Q 012679          332 ATGGG-G-GDRCIKFWNTH---TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV  406 (458)
Q Consensus       332 ~s~~g-~-~d~~i~lwd~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V  406 (458)
                      ..++. + ..-.+.++.-+   .|+.-........+...+|+-....++.+   ..+.|.+|-..+..-.....-.-..+
T Consensus       263 ti~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~---~~n~~~lwttkNyhWYLK~e~~ip~~  339 (1243)
T COG5290         263 TIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA---EGNLLKLWTTKNYHWYLKVERQIPGI  339 (1243)
T ss_pred             eeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh---hcceEEEEEccceEEEEEEeecCCCc
Confidence            44421 1 11235555432   23332233344557778888877777765   35789999887755443333334456


Q ss_pred             EEEEEcCC
Q 012679          407 LFMAQSPD  414 (458)
Q Consensus       407 ~~l~~spd  414 (458)
                      ..+.|+|.
T Consensus       340 s~vkwhpe  347 (1243)
T COG5290         340 SYVKWHPE  347 (1243)
T ss_pred             ceeeeccc
Confidence            66778874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-96
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-93
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-89
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		9e-81
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-18
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-12
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-11
2h9l_A	329	Wdr5delta23 Length = 329		4e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		9e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-07
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-07
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-04

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/416 (44%), Positives = 261/416 (62%), Gaps = 20/416 (4%)
Query: 24  SKENLDRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA---EVFNM 80
           SK   DR+IP+RSA   + A +++++     EN+Q     +P+K+ ++K  A     F++
Sbjct: 4   SKPGGDRYIPHRSAAQMEVASFLLSK-ENQPENSQ-----TPTKKEHQKAWALNLNGFDV 57
Query: 81  NRTRILAFKNKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPR---RHIPQSSERTLDAPX 137
              +IL    KP    +  PE +          Q+A     R   R+IP   +R LDAP 
Sbjct: 58  EEAKILRLSGKP----QNAPEGYQNRLKVLYS-QKATPGSSRKTCRYIPSLPDRILDAPE 112
Query: 138 XXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH 197
                      W S NVLA+AL ++VYLW AS G   +L+ ++     ++SV W  +G +
Sbjct: 113 IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 172
Query: 198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD 257
           +A+G ++ +VQLWD    ++LR +   H +RVGSL+WN++IL++G   G I ++DVRV +
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 231
Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
           H V T  GH+QEVCGL+W+  G+ LASGGNDNL+++W  +      V   L    +H  A
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGA 289
Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
           VKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + +EL+S 
Sbjct: 290 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 349
Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
           HGF QNQL +WKYP+M K+AEL GHTSRVL +  SPDG TVASAAADETLR W  F
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 405

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/407 (44%), Positives = 255/407 (62%), Gaps = 20/407 (4%)
Query: 33  PNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLA---EVFNMNRTRILAFK 89
           P+RSA   + A +++++     EN+Q     +P+K+ ++K  A     F++   +IL   
Sbjct: 2   PHRSAAQMEVASFLLSK-ENQPENSQ-----TPTKKEHQKAWALNLNGFDVEEAKILRLS 55
Query: 90  NKPPTPVELIPEMHXXXXXXXXXVQQAKLNKPR---RHIPQSSERTLDAPXXXXXXXXXX 146
            KP    +  PE +          Q+A     R   R+IP   +R LDAP          
Sbjct: 56  GKP----QNAPEGYQNRLKVLYS-QKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNL 110
Query: 147 XXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQ 206
             W S NVLA+AL ++VYLW AS G   +L+ ++     ++SV W  +G ++A+G ++ +
Sbjct: 111 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGH 266
           VQLWD    ++LR +   H +RVGSL+WN++IL++G   G I ++DVRV +H V T  GH
Sbjct: 171 VQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 229
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
           +QEVCGL+W+  G+ LASGGNDNL+++W  +      V   L    +H  AVKA+AWCP+
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGAVKAVAWCPW 287
Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
           QSN+LATGGG  DR I+ WN  +GACL++VD  SQVC++LW+ + +EL+S HGF QNQL 
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347
Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
           +WKYP+M K+AEL GHTSRVL +  SPDG TVASAAADETLR W  F
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score =  326 bits (835), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/314 (50%), Positives = 215/314 (68%), Gaps = 3/314 (0%)
Query: 120 KPRRHIPQSSERTLDAPXXXXXXXXXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTV 179
           K  R+IP   +R LDAP            W S NVLA+AL ++VYLW AS G   +L+ +
Sbjct: 4   KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 63
Query: 180 DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL 239
           +     ++SV W  +G ++A+G ++ +VQLWD    ++LR +   H +RVGSL+WN++IL
Sbjct: 64  EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYIL 122
Query: 240 TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299
           ++G   G I ++DVRV +H V T  GH+QEVCGL+W+  G+ LASGGNDNL+++W  +  
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359
               V   L    +H  AVKA+AWCP+QSN+LATGGG  DR I+ WN  +GACL++VD  
Sbjct: 183 EGGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419
           SQVC++LW+ + +EL+S HGF QNQL +WKYP+M K+AEL GHTSRVL +  SPDG TVA
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 420 SAAADETLRFWNVF 433
           SAAADETLR W  F
Sbjct: 301 SAAADETLRLWRCF 314

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score =  297 bits (760), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 166/417 (39%), Positives = 245/417 (58%), Gaps = 40/417 (9%)
Query: 29  DRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEV--FNMNRTRIL 86
           DRFIP+R                 +  N    S+ S     Y + +AE   F++N TR+L
Sbjct: 1   DRFIPSR----------------PNTANAFVNSISSDVPFDYSESVAEACGFDLN-TRVL 43
Query: 87  AFKNKPP---TPVELIPEMHXXXXXXXXXVQQAKLNKPRRHIPQSSERTLDAPXXXXXXX 143
           AFK   P    PV+L  + +          Q+  +   +R    + ER LDAP       
Sbjct: 44  AFKLDAPEAKKPVDLRTQHNRP--------QRPVVTPAKRRFNTTPERVLDAPGIIDDYY 95
Query: 144 XXXXXWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN 203
                W + NV+A+AL   VY+W+A  G+ S L   D E+  V SV W+ DG  +++GL 
Sbjct: 96  LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLG 154
Query: 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY 263
           N  V ++D  +  +LRT+  GH++RVG L+WN H+L++G   G I ++DVR+ +H + T 
Sbjct: 155 NGLVDIYDVESQTKLRTM-AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH+ EVCGL W + G QLASGGNDN++ IWD    + +S+ ++      H +AVKA+AW
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD----ARSSIPKFTK--TNHNAAVKAVAW 267
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383
           CP+QSNLLATGGG  D+ I FWN  TGA +N+VD GSQV +L+W+ + +E++S+HGF  N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 384 QLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
            L++W Y S  + K  ++  H +RVL+ A SPDG  +++AA+DE L+FW V+    V
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 38/280 (13%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
           TV LW+ +      L T+   +  V  V ++PDG+ IA   ++  V+LW+   N QL   
Sbjct: 80  TVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQLLQT 134
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII---NNDVRVR-----DHIVETYRGHNQEVCGL 273
             GH S V  +A++         DG  I   ++D  V+       +++T  GH+  V G+
Sbjct: 135 LTGHSSSVWGVAFS--------PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
            +S  GQ +AS  +D  + +W+R+        Q L  L  H+S+V+ +A+ P    + + 
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQTIAS- 238
Query: 334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
                D+ +K WN   G  L ++ TG  S V  + +  + + + S+       + LW   
Sbjct: 239 --ASDDKTVKLWN-RNGQLLQTL-TGHSSSVNGVAFRPDGQTIASAS--DDKTVKLWNRN 292
Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
             + +  L+GH+S V  +A SPDG T+ASA+ D+T++ WN
Sbjct: 293 GQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 17/168 (10%)
Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
           H+  V G+ +S  GQ +AS  +D  + +W+R+        Q L  L  H+S+V  +A+ P
Sbjct: 15  HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVWGVAFSP 67
Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSSHGFTQN 383
               + +      D+ +K WN   G  L ++ TG  S V  + ++ + + + S+      
Sbjct: 68  DGQTIAS---ASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS--DDK 120
Query: 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
            + LW     + +  L+GH+S V  +A SPDG T+ASA+ D+T++ WN
Sbjct: 121 TVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 23/273 (8%)
Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231
           T  +L+ +      V    ++ D  +IA    + +V++WDS   + + T    H  +V  
Sbjct: 653 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNC 711
Query: 232 LAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287
             + N     +L TG  D  +   D+  ++    T  GH   V   ++S   + LAS   
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Query: 288 DNLLHIWDRSMAS---SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK- 343
           D  L +WD   A+   S +V ++    E+    V+ I  C        +    GD+ I  
Sbjct: 771 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC-------CSWSADGDKIIVA 823
Query: 344 ------FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
                  ++ HT   L  + TG        + +  + L+    +Q  + LW   S +K+A
Sbjct: 824 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 883
Query: 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
           +  GH S V  +  SPDG +  +A+ D+T+R W
Sbjct: 884 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           R H   V    +S  GQ++AS G D  L ++             L  ++ H   V     
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK------LLDIKAHEDEVLC--- 669
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV--CALLWNKNERELLSSHGFT 381
           C F S+         D+ +K W++ TG  +++ D  S+   C    NK+   LL++ G  
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT-GSN 728
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
              L LW          + GHT+ V     SPD   +AS +AD TLR W+V  A
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 23/273 (8%)
Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231
           T  +L+ +      V    ++ D  +IA    + +V++WDS   + + T    H  +V  
Sbjct: 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNC 704
Query: 232 LAWNNH----ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287
             + N     +L TG  D  +   D+  ++    T  GH   V   ++S   + LAS   
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 288 DNLLHIWDRSMAS---SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK- 343
           D  L +WD   A+   S +V ++    E+    V+ I  C        +    GD+ I  
Sbjct: 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC-------CSWSADGDKIIVA 816
Query: 344 ------FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
                  ++ HT   L  + TG        + +  + L+    +Q  + LW   S +K+A
Sbjct: 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876
Query: 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
           +  GH S V  +  SPDG +  +A+ D+T+R W
Sbjct: 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           R H   V    +S  GQ++AS G D  L ++             L  ++ H   V     
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK------LLDIKAHEDEVLC--- 662
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV--CALLWNKNERELLSSHGFT 381
           C F S+         D+ +K W++ TG  +++ D  S+   C    NK+   LL++ G  
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT-GSN 721
Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
              L LW          + GHT+ V     SPD   +AS +AD TLR W+V  A
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 124/299 (41%), Gaps = 30/299 (10%)
Query: 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
           S +++ +  +T+ +WD   G      T+      V  +++   G+ +A    +  ++LWD
Sbjct: 121 SVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Query: 212 STANRQLRTLRG-GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
                 +RT+ G  H     S+  N   + +   D  I   +V+   + V+T+ GH + V
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWV 237
Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP---FQ 327
             ++ +  G  +AS  ND  + +W  +     +       L EH   V+ I+W P   + 
Sbjct: 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKA------ELREHRHVVECISWAPESSYS 291
Query: 328 SNLLATGG--------------GGGDRCIKFWNTHTGACLNS-VDTGSQVCALLWNKNER 372
           S   ATG               G  D+ IK W+  TG CL + V   + V  +L++   +
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 351
Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
            +LS        L +W Y +   M  L+ H   V  +        V + + D+T++ W 
Sbjct: 352 FILSCAD--DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 33/231 (14%)
Query: 224 GHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281
           GHRS V  + ++    ++ +   D  I   D    D    T +GH   V  + +  SG+ 
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKL 164
Query: 282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
           LAS   D  + +WD          + +  +  H   V +++  P   ++++      D+ 
Sbjct: 165 LASCSADMTIKLWDFQGF------ECIRTMHGHDHNVSSVSIMPNGDHIVS---ASRDKT 215
Query: 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG 401
           IK W   TG C+ +  TG +    +   N+   L +       + +W   +    AEL  
Sbjct: 216 IKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 402 HTSRVLFMAQSPD--------------------GCTVASAAADETLRFWNV 432
           H   V  ++ +P+                    G  + S + D+T++ W+V
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 69  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 126
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 127 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 185 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 235
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 236 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 71  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 128
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 129 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 187 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 237
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 238 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 289 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 53  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 111 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 169 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 219
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 220 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 50  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 53  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 111 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 169 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 219
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 220 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 48  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 105
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 106 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 164 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 214
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 215 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 266 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 47  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 105 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 163 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 213
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 214 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 64  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 121
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 122 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 179
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 180 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 230
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 231 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 282 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 47  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 104
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 105 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 163 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 213
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 214 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 53  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 111 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 169 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 219
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 220 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 43  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 100
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 101 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 159 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 209
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 210 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 261 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 46  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 103
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 104 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 162 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 212
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 213 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 264 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 52  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 109
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 110 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 168 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 218
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 219 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 270 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 50  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-MCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 217 NDLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 50  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ--VCALLWN 368
           L  HT AV ++ + P    L A+     D+ IK W  + G    ++ +G +  +  + W+
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSA---DKLIKIWGAYDGKFEKTI-SGHKLGISDVAWS 77
Query: 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLR 428
            +   L+S+       L +W   S   +  L GH++ V     +P    + S + DE++R
Sbjct: 78  SDSNLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 429 FWNV 432
            W+V
Sbjct: 136 IWDV 139

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 109/242 (45%), Gaps = 23/242 (9%)
Query: 227 SRVGSLAWN--NHILTTGGMDGLI----INNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
           SR   LAWN    +L + G D  I       D  +   ++    GH + V  + WS  G 
Sbjct: 17  SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGN 74
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340
            LAS   D    IW ++      VT     LE H + VK++AW P   NLLAT     D+
Sbjct: 75  YLASASFDATTCIWKKNQDDFECVTT----LEGHENEVKSVAWAP-SGNLLATCSR--DK 127
Query: 341 CIKFWNTHTG---ACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVK 395
            +  W         C++ +++ +Q V  ++W+ ++ ELL+S  +    +L   +    V 
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC 186
Query: 396 MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF--GAPQVISKSAPKPNREPFAQ 453
            A L GH S V  +A  P G  +AS + D T+R W  +  G  Q ++ S   P+ +    
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246
Query: 454 LN 455
           L+
Sbjct: 247 LS 248

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 50  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ +
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 124/284 (43%), Gaps = 38/284 (13%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR 222
           + +W A DG   +  T+      ++ V W+ D   +    ++  +++WD ++ + L+TL+
Sbjct: 50  IKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
Query: 223 GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
            GH + V    +N  ++++ +G  D  +   DV+     ++T   H+  V  + ++  G 
Sbjct: 108 -GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGD 339
            + S   D L  IWD +        Q L  L ++    V  + + P    +LA      D
Sbjct: 166 LIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILA---ATLD 216
Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-----------GFTQNQLTLW 388
             +K W+   G CL +  TG        +KNE+  + ++           G   N + +W
Sbjct: 217 NTLKLWDYSKGKCLKTY-TG--------HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFW 430
              +   + +L GHT  V+  A  P    +ASAA   D+T++ +
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 54/291 (18%)
Query: 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLW-------------DSTANRQLRTLRGGHRS 227
           D    V  V ++ DG ++A G N    Q++             DS AN+    L      
Sbjct: 62  DHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 228 ------RVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281
                 R    + +   L TG  D LI   D+  R  IV   +GH Q++  L +  SG +
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDK 179
Query: 282 LASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340
           L SG  D  + IWD R+   S +++     +E+    V  +A  P     +A   G  DR
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLS-----IED---GVTTVAVSPGDGKYIA--AGSLDR 229
Query: 341 CIKFWNTHTGACLNSVDTGSQ--------VCALLWNKNERELLSSHGFTQNQLTLW---- 388
            ++ W++ TG  +  +D+ ++        V ++++ ++ + ++S  G     + LW    
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQN 287
Query: 389 -------KYP-SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
                  K P S        GH   VL +A + +   + S + D  + FW+
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR 219
           +T+ +WD   G    ++      G V +V     DGR +  G  +  V++WD      L 
Sbjct: 219 ATLRVWDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 273
Query: 220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
           TL+ GH +RV SL ++   + +G +D  I   DV   +  + T  GH     G++     
Sbjct: 274 TLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGME--LKD 329
Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339
             L SG  D+ + IWD     +    Q L    +H SAV  +    F  N + T    G 
Sbjct: 330 NILVSGNADSTVKIWD---IKTGQCLQTLQGPNKHQSAVTCL---QFNKNFVITSSDDGT 383
Query: 340 RCIKFWNTHTGACLNSVDT 358
             +K W+  TG  + ++ T
Sbjct: 384 --VKLWDLKTGEFIRNLVT 400

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 22/239 (9%)
Query: 195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254
           G  I  G ++  +++W +   + LRTL  GH   V S    ++I+ +G  D  +   +  
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187
Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
             +  + T  GH   V  +      +++ SG  D  L +WD          Q LH L  H
Sbjct: 188 TGE-CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG------QCLHVLMGH 238
Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCALLWNKNERE 373
            +AV+ +     Q +      G  D  +K W+  T  CL+++   + +V +L ++     
Sbjct: 239 VAAVRCV-----QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG---- 289
Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           +    G     + +W   +   +  L+GH S    M    +   + S  AD T++ W++
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
           +  +GH+  V        G ++ SG +DN L +W      S    + L  L  HT  V +
Sbjct: 112 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVW------SAVTGKCLRTLVGHTGGVWS 164
Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQVCALLWNKNERELLSSH 378
                 + N++ +G    DR +K WN  TG C++++   T +  C  L   +E+ ++S  
Sbjct: 165 ---SQMRDNIIISGST--DRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVS-- 214
Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           G     L +W   +   +  L GH + V  +    DG  V S A D  ++ W+
Sbjct: 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 121/305 (39%), Gaps = 48/305 (15%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
           T+ +WD +      ++T     G V  + +  D R I  G ++  V++WD      L TL
Sbjct: 154 TIKIWDKNTLECKRILT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGLKW 275
              H   V  L +NN ++ T   D  I         D+ +R  +V    GH   V  + +
Sbjct: 210 -IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV----GHRAAVNVVDF 264
Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
               + + S   D  + +W+       S  +++  L  H    + IA   ++  L+ +G 
Sbjct: 265 D--DKYIVSASGDRTIKVWN------TSTCEFVRTLNGHK---RGIACLQYRDRLVVSGS 313
Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395
              D  I+ W+   GACL  ++   ++   +   N+R +    G    ++ +W   + + 
Sbjct: 314 S--DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV---SGAYDGKIKVWDLVAALD 368
Query: 396 ------------MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443
                       + E SG   R+ F     D   + S++ D+T+  W+    P   ++  
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDPAAQAEPP 423
Query: 444 PKPNR 448
             P+R
Sbjct: 424 RSPSR 428

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
           GH+  V  +  S+ GQ   SG  D  L +WD +   S        R   HT  V ++A+ 
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST------RRFVGHTKDVLSVAFS 481
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
                +++      DR IK WNT  G C  ++  G +          R+ +S   F+ N 
Sbjct: 482 LDNRQIVS---ASRDRTIKLWNT-LGECKYTISEGGE--------GHRDWVSCVRFSPNT 529
Query: 385 L-------------TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           L              +W   +    + L+GHT  V  +A SPDG   AS   D  +  W+
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Query: 432 VFGAPQVISKSA 443
           +    ++ S  A
Sbjct: 590 LAEGKKLYSLEA 601

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 15/197 (7%)
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
            GH+  V  +  S +G    S   D+ L +W+          Q  ++   HT  V ++A+
Sbjct: 64  EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG------QCQYKFLGHTKDVLSVAF 117
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV----CALLWNKNERELLSSHG 379
            P    +++   GG D  ++ WN   G C++++  G+      C       +  ++ S G
Sbjct: 118 SPDNRQIVS---GGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 380 FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI 439
           +  N + +W   +   + +L GHT+ V  +  SPDG   AS+  D   R W++     + 
Sbjct: 174 W-DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 440 SKSAPKPNREPFAQLNR 456
             +A  P  +     NR
Sbjct: 233 EMAAGAPINQICFSPNR 249

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 119/293 (40%), Gaps = 52/293 (17%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVT---SVNWAPDGRHIAIGL--NNCQVQLWDSTANRQ 217
           V +WD+        VT+     P T   +  +AP G  IA G   N C V       N  
Sbjct: 88  VIVWDSFTTNKEHAVTM-----PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142
Query: 218 LRTLRGG---HRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
           +   +     H + + + ++ N    ILT  G DG     DV     +++++ GH  +V 
Sbjct: 143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASG-DGTCALWDVE-SGQLLQSFHGHGADVL 200
Query: 272 GLKW--SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
            L    S +G    SGG D    +WD  M S     Q +   E H S V ++ + P   +
Sbjct: 201 CLDLAPSETGNTFVSGGCDKKAMVWD--MRSG----QCVQAFETHESDVNSVRYYP-SGD 253
Query: 330 LLATGGGGG---------DRCIKFWNTHT---GACLNSVDTGSQVCALLWNKNERELLSS 377
             A+G             DR +  ++  +   GA  +SVD         ++ + R L + 
Sbjct: 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGA--SSVD---------FSLSGRLLFA- 301
Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
            G+    + +W      +++ L GH +RV  +  SPDG    S + D TLR W
Sbjct: 302 -GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 162 TVYLWDASDGTTSELVTVDD-----ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216
           T+ L++  DGT + +   D       +G V  + W+PDG  IA    +  +++W+    +
Sbjct: 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Query: 217 QLRTLRGGHRSRVGSLA--WNNHILTTGGMDGLI--INNDVRVRDHIVETYRGHNQEVCG 272
             +T+  G R     L   W    L +   +G I  +N ++   D +     GHN+ +  
Sbjct: 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV---RYGHNKAITA 329
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH 309
           L  SA G+ L S   +  ++ WD S   SN V   +H
Sbjct: 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 123/288 (42%), Gaps = 35/288 (12%)
Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA-IGLNN---CQVQLWDS-TANRQ 217
           V +WD +  T     T+   +GPV  ++W  + + IA +G        V L+D+ T+N  
Sbjct: 83  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 142
Query: 218 LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVC 271
           L     G    + S+ +  +       G D    +N V + +        T+  H + V 
Sbjct: 143 LT----GQARAMNSVDFKPSRPFRIISGSD----DNTVAIFEGPPFKFKSTFGEHTKFVH 194
Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ--WLHRLEEHTSAVKAIAWCPFQSN 329
            ++++  G   AS G D  + +++    +   V +   L  +  H+ +V  + W P  + 
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTK 253
Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV----CALLWNKNERELLSSHGFTQNQL 385
           + +      D+ IK WN  T     ++  G+++      ++W K     +S++GF     
Sbjct: 254 IAS---ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN--- 307
Query: 386 TLWKYPSMVKMAEL-SGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             +  P +  + ++  GH   +  ++ S DG T+ SA A+  +  W++
Sbjct: 308 --FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
           A+ ++  LRG   GH   V SLA +    ++L +   D  +I+  +   D      V ++
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH+  V     +A G    S   D  L +WD +   +        R   H S V ++  
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
               S +++   G  D+ IK W T  G CL ++    D  SQV  +   K + + ++   
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
              +++   W        A+  GH S +  +  SPDG  +ASA  D  +  WN+     +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
            + SA
Sbjct: 232 YTLSA 236

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
           A+ ++  LRG   GH   V SLA +    ++L +   D  +I+  +   D      V ++
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH+  V     +A G    S   D  L +WD +   +        R   H S V ++  
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
               S +++   G  D+ IK W T  G CL ++    D  SQV  +   K + + ++   
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
              +++   W        A+  GH S +  +  SPDG  +ASA  D  +  WN+     +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
            + SA
Sbjct: 232 YTLSA 236

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
           A+ ++  LRG   GH   V SLA +    ++L +   D  +I+  +   D      V ++
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH+  V     +A G    S   D  L +WD +   +        R   H S V ++  
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
               S +++   G  D+ IK W T  G CL ++    D  SQV  +   K + + ++   
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
              +++   W        A+  GH S +  +  SPDG  +ASA  D  +  WN+     +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
            + SA
Sbjct: 232 YTLSA 236

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 25/245 (10%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
           A+ ++  LRG   GH   V SLA +    ++L +   D  +I+  +   D      V ++
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH+  V     +A G    S   D  L +WD +   +        R   H S V ++  
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHG 379
               S +++   G  D+ IK W T  G CL ++    D  SQV  +   K + + ++   
Sbjct: 116 DKKASMIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 380 FTQNQLT-LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
              +++   W        A+  GH S +  +  SPDG  +ASA  D  +  WN+     +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 439 ISKSA 443
            + SA
Sbjct: 232 YTLSA 236

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 41/242 (16%)
Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQEVCG 272
           Q  TLRG   S +  L + ++ + TG  D +I     RV D I + +     GH+  V  
Sbjct: 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMI-----RVYDSINKKFLLQLSGHDGGVWA 167
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
           LK+ A G  L SG  D  + +WD             H  E H S V+ +    ++ N+  
Sbjct: 168 LKY-AHGGILVSGSTDRTVRVWDIKKGCCT------HVFEGHNSTVRCLDIVEYK-NIKY 219
Query: 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQ----------------VCALLWNKNERELLS 376
              G  D  +  W     + +   D G +                V  L  +      +S
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVP--DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 377 SH------GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
            H      G   N L +W    M  +  LSGHT R+       +     SA+ D T+R W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 431 NV 432
           ++
Sbjct: 338 DL 339

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 27/235 (11%)
Query: 214 ANRQLRTLRG---GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETY 263
           A+ ++  LRG   GH   V SLA +    ++L +   D  +I+  +   D      V ++
Sbjct: 2   ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH+  V     +A G    S   D  L +WD +   +        R   H S V ++  
Sbjct: 62  KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVXSVDI 115
Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLS--S 377
               S +++   G  D+ IK W T  G CL ++    D  SQV  +   K + + ++  S
Sbjct: 116 DKKASXIIS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
            G     +  W        A+  GH S +  +  SPDG  +ASA  D  +  WN+
Sbjct: 172 AG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 218 LRTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI----VETYRGHNQEV 270
           LR    GH   V SLA +    ++L +   D  +I+  +   D      V +++GH+  V
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
                +A G    S   D  L +WD +   +        R   H S V ++      S +
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVATGET------YQRFVGHKSDVMSVDIDKKASMI 116
Query: 331 LATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHGFTQNQLT 386
           ++   G  D+ IK W T  G CL ++    D  SQV  +   K + + ++      +++ 
Sbjct: 117 IS---GSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 387 -LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA 443
             W        A+  GH S +  +  SPDG  +ASA  D  +  WN+     + + SA
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 25/211 (11%)
Query: 184 GPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSLAWNN-- 236
           G  +S  + PD    +  G  +    LWD T  +++         GH + V SL+ N+  
Sbjct: 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217
Query: 237 -HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
            ++  +G  D  +   D+R+    V TY GH  ++  +K+   GQ+  +G +D    ++D
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 296 -RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI------------ 342
            R+        +   R +     V ++A+      LL  G   GD  +            
Sbjct: 278 MRTGHQLQVYNREPDRNDNELPIVTSVAF-SISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336
Query: 343 -KFWNTHTG--ACLNSVDTGSQVCALLWNKN 370
               N+H G  +CL     GS +C   W+KN
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL--TT 241
           G + +V  +PDG   A G  + Q  LWD    + L TL GG        + N + L   T
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 275
Query: 242 G------GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
           G       ++G II ++++ ++ I  + +    +   L WSA GQ L +G  DNL+ +W 
Sbjct: 276 GPSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Query: 296 RSMAS 300
            ++ +
Sbjct: 335 VTIGT 339

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL--TT 241
           G + +V  +PDG   A G  + Q  LWD    + L TL GG        + N + L   T
Sbjct: 193 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT 252
Query: 242 G------GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
           G       ++G II ++++ ++ I  + +    +   L WSA GQ L +G  DNL+ +W 
Sbjct: 253 GPSIKIWDLEGKIIVDELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Query: 296 RSMAS 300
            ++ +
Sbjct: 312 VTIGT 316

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 117/269 (43%), Gaps = 43/269 (15%)
Query: 215 NRQLRTLRGGHRSRVGSLAWNNHI---LTTGGMDGLIINNDVRV---RDHIVET---YRG 265
           N  LR LRG  +   G L+WN ++   L +   D  I   D+        +V+    + G
Sbjct: 168 NPDLR-LRGHQKEGYG-LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTG 225
Query: 266 HNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
           H   V  + W    + L  S  +D  L IWD     SN+ ++  H ++ HT+ V  +++ 
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWD---TRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQ 382
           P+   +LAT  G  D+ +  W+       L+S ++   ++  + W+ +   +L+S G T 
Sbjct: 283 PYSEFILAT--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TD 339
Query: 383 NQLTLWKYPSMVKMAEL-----------------SGHTSRVLFMAQSP-DGCTVASAAAD 424
            +L +W    + K+ E                   GHT+++   + +P +   + S + D
Sbjct: 340 RRLNVW---DLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Query: 425 ETLRFWNVFGAPQVISKSAPKPNREPFAQ 453
             ++ W +  A  + +   P+ + +P  Q
Sbjct: 397 NIMQVWQM--AENIYNDEDPEGSVDPEGQ 423

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 224 GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV--RDHIV----ETYRGHNQEVCGLK 274
           GH+     L+WN   N  L +   D  I   D+    ++H V      + GH   V  + 
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 275 WSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
           W    + L  S  +D  L IWD     +N+ ++  H ++ HT+ V  +++ P+   +LAT
Sbjct: 241 WHLLHESLFGSVADDQKLMIWD---TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 334 GGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY- 390
             G  D+ +  W+       L+S ++   ++  + W+ +   +L+S G T  +L +W   
Sbjct: 298 --GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLS 354
Query: 391 ---------------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFG 434
                          P ++ +    GHT+++   + +P +   + S + D  ++ W +  
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM-- 410
Query: 435 APQVISKSAPK 445
           A  V +   P+
Sbjct: 411 AENVYNDEEPE 421

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 39/251 (15%)
Query: 224 GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRV--RDHIV----ETYRGHNQEVCGLK 274
           GH+     L+WN   N  L +   D  I   D+    ++H V      + GH   V  + 
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 275 WSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
           W    + L  S  +D  L IWD     +N+ ++  H ++ HT+ V  +++ P+   +LAT
Sbjct: 239 WHLLHESLFGSVADDQKLMIWD---TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 334 GGGGGDRCIKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY- 390
             G  D+ +  W+       L+S ++   ++  + W+ +   +L+S G T  +L +W   
Sbjct: 296 --GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLS 352
Query: 391 ---------------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFG 434
                          P ++ +    GHT+++   + +P +   + S + D  ++ W +  
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM-- 408
Query: 435 APQVISKSAPK 445
           A  V +   P+
Sbjct: 409 AENVYNDEEPE 419

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 41/242 (16%)
Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQEVCG 272
           Q  TLRG   S +  L + ++ + TG  D  I     RV D I + +     GH+  V  
Sbjct: 113 QRTTLRGHXTSVITCLQFEDNYVITGADDKXI-----RVYDSINKKFLLQLSGHDGGVWA 167
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
           LK+ A G  L SG  D  + +WD             H  E H S V+ +    ++ N+  
Sbjct: 168 LKY-AHGGILVSGSTDRTVRVWDIKKGCCT------HVFEGHNSTVRCLDIVEYK-NIKY 219
Query: 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQ----------------VCALLWNKNERELLS 376
              G  D  +  W     + +   D G +                V  L  +      +S
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVP--DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 377 SHGFT------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
            HG         N L +W       +  LSGHT R+       +     SA+ D T+R W
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Query: 431 NV 432
           ++
Sbjct: 338 DL 339

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 9/176 (5%)
Query: 264 RGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAI 321
           RGH +E  GL W+ +    L S  +D+ + +WD  +    + V    +    HT+ V+ +
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNT---HTGACLNSVDTGSQVCALLWNKNERELLSSH 378
           AW     +L   G    D+ +  W+T   +T    ++VD  +     L      E + + 
Sbjct: 242 AWHLLHESLF--GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 379 GFTQNQLTLWKYPSM-VKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNV 432
           G     + LW   ++ +K+     H   +  +  SP   T+ AS+  D  L  W++
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
           R++     T RGH  ++  + W    + L S   D  L IWD      +  T  +H +  
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
            +S V   A+ P   N +A GG      I    T  G    S +    TG   C    + 
Sbjct: 96  RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
           N  ++++S G T     LW   +  +    +GHT  V+ ++ +PD     S A D + + 
Sbjct: 155 N--QIVTSSGDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
           W+V
Sbjct: 211 WDV 213

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
           R++     T RGH  ++  + W    + L S   D  L IWD      +  T  +H +  
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
            +S V   A+ P   N +A GG      I    T  G    S +    TG   C    + 
Sbjct: 96  RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
           N  ++++S G T     LW   +  +    +GHT  V+ ++ +PD     S A D + + 
Sbjct: 155 N--QIVTSSGDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
           W+V
Sbjct: 211 WDV 213

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
           R++     T RGH  ++  + W    + L S   D  L IWD      +  T  +H +  
Sbjct: 53  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPL 106
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
            +S V   A+ P   N +A GG      I    T  G    S +    TG   C    + 
Sbjct: 107 RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
           N  ++++S G T     LW   +  +    +GHT  V+ ++ +PD     S A D + + 
Sbjct: 166 N--QIVTSSGDT--TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 221
Query: 430 WNV 432
           W+V
Sbjct: 222 WDV 224

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
           WG+ +  +L+ +    + +WD+   TT+++  +   +  V +  +AP G ++A G L+N 
Sbjct: 63  WGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
           C +  L     N ++     GH   +    +  +N I+T+ G D      D+        
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 178
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
           T+ GH  +V  L  +   +   SG  D    +WD        V + + R     H S + 
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 230
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
           AI + P   N  ATG    D   + ++      L +    + +C +    ++K+ R LL+
Sbjct: 231 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
             G+      +W      +   L+GH +RV  +  + DG  VA+ + D  L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
           R++     T RGH  ++  + W    + L S   D  L IWD      +  T  +H +  
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
            +S V   A+ P   N +A GG      I    T  G    S +    TG   C    + 
Sbjct: 96  RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
           N+  +++S G T     LW   +  +    +GHT  V+ ++ +PD     S A D + + 
Sbjct: 155 NQ--IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
           W+V
Sbjct: 211 WDV 213

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 29/295 (9%)
Query: 149 WGSSN--VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNN- 204
           WG+ +  +L+ +    + +WD+   TT+++  +   +  V +  +AP G ++A G L+N 
Sbjct: 63  WGTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 205 CQV-QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
           C +  L     N ++     GH   +    +  +N I+T+ G D      D+        
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTT 178
Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAVK 319
           T+ GH  +V  L  +   +   SG  D    +WD        V + + R     H S + 
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFTGHESDIN 230
Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALL---WNKNERELLS 376
           AI + P   N  ATG    D   + ++      L +    + +C +    ++K+ R LL+
Sbjct: 231 AICFFP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
             G+      +W      +   L+GH +RV  +  + DG  VA+ + D  L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 15/183 (8%)
Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
           R++     T RGH  ++  + W    + L S   D  L IWD      +  T  +H +  
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD------SYTTNKVHAIPL 95
Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNK 369
            +S V   A+ P   N +A GG      I    T  G    S +    TG   C    + 
Sbjct: 96  RSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
           N+  +++S G T     LW   +  +    +GHT  V+ ++ +PD     S A D + + 
Sbjct: 155 NQ--IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 430 WNV 432
           W+V
Sbjct: 211 WDV 213

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 123/290 (42%), Gaps = 51/290 (17%)
Query: 184 GPVTSVNWAPDGRHI-AIGLNNCQVQLWDST-----------ANRQLRTLRGGHRSRVGS 231
           G V    + P   HI A    +  V ++D T            N  LR LRG  +   G 
Sbjct: 127 GEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR-LRGHQKEGYG- 184
Query: 232 LAWNNHI---LTTGGMDGLIINNDVRV---RDHIVET---YRGHNQEVCGLKWSASGQQL 282
           L+WN+++   L +   D  +   D+        IV+    + GH+  V  + W    + L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 283 -ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
             S  +D  L IWD     SN+ ++  H ++ HT+ V  +++ P+   +LAT  G  D+ 
Sbjct: 245 FGSVADDQKLMIWD---TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT--GSADKT 299
Query: 342 IKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKY--------- 390
           +  W+       L++ ++   ++  + W+ +   +L+S G T  +L +W           
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG-TDRRLNVWDLSKIGEEQSA 358
Query: 391 -------PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432
                  P ++ +    GHT+++   + +P +   + S + D  ++ W +
Sbjct: 359 EDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 224 GHRSRVGSLAWNNH--ILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGLKW 275
            H+  + S+AW  H  +L  G  D  +       + D      ++    GH  EV G+ W
Sbjct: 56  AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
           S  G  LA+   D  + IW+     S    + +  L+EH+  VK + W P ++ LLA+  
Sbjct: 116 SNDGYYLATCSRDKSVWIWETD--ESGEEYECISVLQEHSQDVKHVIWHPSEA-LLAS-- 170
Query: 336 GGGDRCIKFWNTH 348
              D  ++ W  +
Sbjct: 171 SSYDDTVRIWKDY 183

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
           V  +++ P    +   L + +V+LW+     ++R+++      R G      + +  G  
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
           D  I   +    + +V+ +  H   +  +    +   + SG +D  + +W       N  
Sbjct: 76  DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
             W      E H   V  +A+ P   +  A+G    DR +K W+        ++ TG + 
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
               V           + +S   T   + +W Y +   +A L GH S V F    P    
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
           + S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
           V  +++ P    +   L + +V+LW+     ++R+++      R G      + +  G  
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
           D  I   +    + +V+ +  H   +  +    +   + SG +D  + +W       N  
Sbjct: 76  DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
             W      E H   V  +A+ P   +  A+G    DR +K W+        ++ TG + 
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
               V           + +S   T   + +W Y +   +A L GH S V F    P    
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
           + S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 53/289 (18%)
Query: 184 GPVTSVNWAPDGRHI-AIGLNNCQVQLWDST-----------ANRQLRTLRGGHRSRVGS 231
           G V    + P   HI A    +  V ++D T            N  LR LRG  +   G 
Sbjct: 127 GEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLR-LRGHQKEGYG- 184
Query: 232 LAWNNHI---LTTGGMDGLIINNDVRV---RDHIVET---YRGHNQEVCGLKWSASGQQL 282
           L+WN+++   L +   D  +   D+        IV+    + GH+  V  + W    + L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 283 -ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
             S  +D  L IWD     SN+ ++  H ++ HT+ V  +++ P+   +LAT  G  D+ 
Sbjct: 245 FGSVADDQKLXIWD---TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT--GSADKT 299
Query: 342 IKFWNTHTGAC-LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE- 398
           +  W+       L++ ++   ++  + W+ +   +L+S G T  +L +W    + K+ E 
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG-TDRRLNVW---DLSKIGEE 355
Query: 399 ----------------LSGHTSRVLFMAQSP-DGCTVASAAADETLRFW 430
                             GHT+++   + +P +   + S + D   + W
Sbjct: 356 QSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 20/207 (9%)
Query: 179 VDDENGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRG------GHRSRVGS 231
           V     PV  + W P   + IA G  +C V +W+      +  LR       GH  RVG 
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 232 LAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGN 287
           +AW+    ++L + G D +I+  DV     ++      H   +  + WS  G  + +   
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWN 346
           D  + + +       +V     R  E T  V A+     +  +L TG     +R +  W+
Sbjct: 197 DKRVRVIE---PRKGTVVAEKDRPHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWD 251
Query: 347 T---HTGACLNSVDTGSQVCALLWNKN 370
           T        L  +DT S V    ++ +
Sbjct: 252 TKHLEEPLSLQELDTSSGVLLPFFDPD 278

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 20/203 (9%)
Query: 183 NGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRG------GHRSRVGSLAWN 235
             PV  + W P   + IA G  +C V +W+      +  LR       GH  RVG +AW+
Sbjct: 81  TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 236 ---NHILTTGGMDGLIINNDVRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDNLL 291
               ++L + G D +I+  DV     ++      H   +  + WS  G  + +   D  +
Sbjct: 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRV 200
Query: 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNT--- 347
            + +       +V     R  E T  V A+     +  +L TG     +R +  W+T   
Sbjct: 201 RVIE---PRKGTVVAEKDRPHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWDTKHL 255
Query: 348 HTGACLNSVDTGSQVCALLWNKN 370
                L  +DT S V    ++ +
Sbjct: 256 EEPLSLQELDTSSGVLLPFFDPD 278

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
           L WS + + +A   ++  L ++  + A  N+    + R   H+S+VK + +   Q N+LA
Sbjct: 73  LDWSHNNKIIAGALDNGSLELYSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130
Query: 333 TGGGGGD-------RCIKFWNTHT----GACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
           +GG  G+       +C +  + +T    G  ++SVD   +V +L WN++   + +S G +
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD---EVISLAWNQSLAHVFASAG-S 186
Query: 382 QNQLTLWKYPSMVKMAELS 400
            N  ++W   +  ++  LS
Sbjct: 187 SNFASIWDLKAKKEVIHLS 205

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--N 235
           ++D     + S+ ++PDG+++A G  +  + ++D    + L TL G H   + SL +  +
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPD 217
Query: 236 NHILTTGGMDGLIINNDVR-------VRDH------------------------------ 258
           + +L T   DG I   DV+       +  H                              
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Query: 259 ----IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
                V T+  H  +V G+K++ +G ++ S G+D  +HI+D
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 21/254 (8%)
Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS-RVGSLAWNNHILTTGGM 244
           V  +++ P    +   L + +V+LW+     ++R+++      R G      + +  G  
Sbjct: 16  VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
           D  I   +    + +V+ +  H   +  +    +   + SG +D  + +W       N  
Sbjct: 76  DFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWE 127
Query: 305 TQWL--HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ- 361
             W      E H   V  +A+ P   +  A+G    DR +K W+        ++ TG + 
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQER 185
Query: 362 ----VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
               V           + +S   T   + +W Y +   +A L GH S V F    P    
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLT---IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 418 VASAAADETLRFWN 431
           + S + D TL+ WN
Sbjct: 243 IISGSEDGTLKIWN 256

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
           T+ LWD   GTT +          V SV ++PD R I       +++LW+     +  + 
Sbjct: 99  TLRLWDLRTGTTYKRFV--GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 222 RGGHRSRVGSLAWNNHILTTG-------------GMDG--LIINNDVRVRDHIVETYRGH 266
              + S   S    + I+ +              G DG   + N + ++R     T++ H
Sbjct: 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR----YTFKAH 212
Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWD 295
              V  L  S +G+ +A+GG D  L IWD
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWD 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	0.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-28
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-12
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-42
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-39
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-38
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-36
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-12
3ow8_A	321	WD repeat-containing protein 61; structural genomi	5e-40
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-32
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-28
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-20
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	6e-40
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-34
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-20
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-18
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-39
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-32
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-22
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-10
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-39
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-31
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	9e-29
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-13
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-38
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-37
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-33
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-29
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	7e-14
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-37
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-35
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-35
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	4e-31
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-36
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	4e-36
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-30
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-12
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	6e-36
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-33
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	5e-30
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-23
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	4e-20
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	7e-36
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-24
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	7e-36
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-28
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	5e-23
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	8e-36
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-32
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-29
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-27
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-22
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-22
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	7e-21
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	8e-36
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	7e-26
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-22
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	4e-08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-04
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-35
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	8e-30
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-23
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	6e-20
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-35
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-35
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-33
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-32
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-31
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-25
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-35
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-27
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-19
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-18
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-35
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	7e-34
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	4e-35
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	7e-20
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-34
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-32
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-31
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-27
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	6e-26
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	1e-15
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-12
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-34
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-34
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-33
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-24
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	9e-34
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-32
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-29
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	6e-21
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-15
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	5e-12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-33
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	9e-33
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	7e-29
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-19
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-18
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-33
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-29
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	9e-28
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-22
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-09
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-33
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	5e-32
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-29
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-18
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	7e-33
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-27
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-20
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-32
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	3e-29
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	4e-29
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-18
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-14
2pm7_B	297	Protein transport protein SEC13, protein transport	6e-32
2pm7_B	297	Protein transport protein SEC13, protein transport	5e-28
2pm7_B	297	Protein transport protein SEC13, protein transport	1e-25
2pm7_B	297	Protein transport protein SEC13, protein transport	4e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	6e-32
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-24
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-17
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	2e-08
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-31
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-29
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-31
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-30
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-27
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-25
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-31
3jrp_A	379	Fusion protein of protein transport protein SEC13	7e-31
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-24
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-16
3jrp_A	379	Fusion protein of protein transport protein SEC13	4e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-31
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	4e-29
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	8e-25
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-31
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	9e-30
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	2e-28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-24
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	9e-31
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	5e-25
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	9e-14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	7e-09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-30
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-25
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	8e-24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-05
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-30
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-20
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-20
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	8e-30
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-24
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	9e-22
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-17
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-09
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-29
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	7e-29
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-24
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-11
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-08
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-29
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-23
3jro_A	753	Fusion protein of protein transport protein SEC13	7e-12
3jro_A	753	Fusion protein of protein transport protein SEC13	4e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-28
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-21
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-19
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-13
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-28
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-24
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	4e-23
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	7e-13
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-27
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	6e-25
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-19
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	5e-25
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	3e-18
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	3e-06
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	6e-04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	8e-25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	7e-08
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-21
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-16
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-13
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	6e-09
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-08
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-07
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-19
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-16
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-17
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	8e-14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	9e-14
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	1e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-17
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	1e-13
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-17
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-14
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	3e-09
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	7e-07
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	2e-15
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	1e-09
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	9e-06
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	3e-05
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	1e-04
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	3e-04

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  540 bits (1393), Expect = 0.0
 Identities = 166/408 (40%), Positives = 244/408 (59%), Gaps = 32/408 (7%)

Query: 29  DRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMN-RTRILA 87
           DRFIP+R      + + +                 S     Y + +AE    +  TR+LA
Sbjct: 1   DRFIPSRPNTANAFVNSI----------------SSDVPFDYSESVAEACGFDLNTRVLA 44

Query: 88  FKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLL 147
           FK   P   + +        +  +  Q+  +   +R    + ER LDAP ++DDYYLNLL
Sbjct: 45  FKLDAPEAKKPV-----DLRTQHNRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLL 99

Query: 148 DWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV 207
           DW + NV+A+AL   VY+W+A  G+ S L   D E+  V SV W+ DG  +++GL N  V
Sbjct: 100 DWSNLNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLV 158

Query: 208 QLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN 267
            ++D  +  +LRT+ G H++RVG L+WN H+L++G   G I ++DVR+ +H + T +GH+
Sbjct: 159 DIYDVESQTKLRTMAG-HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS 217

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327
            EVCGL W + G QLASGGNDN++ IWD         +        H +AVKA+AWCP+Q
Sbjct: 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARS------SIPKFTKTNHNAAVKAVAWCPWQ 271

Query: 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387
           SNLLATGGG  D+ I FWN  TGA +N+VD GSQV +L+W+ + +E++S+HGF  N L++
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331

Query: 388 WKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
           W Y S  + K  ++  H +RVL+ A SPDG  +++AA+DE L+FW V+
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  114 bits (287), Expect = 4e-28
 Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 29/219 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           ++ GS    ++  D       ++ T+   +  V  + W  DG  +A G N+  VQ+WD+ 
Sbjct: 189 LSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247

Query: 214 ANRQLRTLRGGHRSRVGSLAWN---NHILTTGG--MDGLIINNDVRVRD----HIVETYR 264
           ++    T    H + V ++AW    +++L TGG  MD  I        +      V T  
Sbjct: 248 SSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQI-----HFWNAATGARVNTVD 301

Query: 265 GHNQEVCGLKWSASGQQLAS--GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
             +Q V  L WS   +++ S  G  DN L IW     SS+ +T+    +  H + V   A
Sbjct: 302 AGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWS---YSSSGLTK-QVDIPAHDTRVLYSA 356

Query: 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ 361
             P    +L+T     D  +KFW  + G  +      ++
Sbjct: 357 LSP-DGRILSTAAS--DENLKFWRVYDGDHVKRPIPITK 392

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 21/164 (12%), Positives = 51/164 (31%), Gaps = 53/164 (32%)

Query: 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337
           S   + +   +  +++W+   A S SV+       + ++ V ++ W     + L+ G G 
Sbjct: 102 SNLNVVAVALERNVYVWN---ADSGSVSALA--ETDESTYVASVKWSH-DGSFLSVGLG- 154

Query: 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
            +  +  ++  +   L +                                          
Sbjct: 155 -NGLVDIYDVESQTKLRT------------------------------------------ 171

Query: 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
            ++GH +RV     S +   ++S +    +   +V  A   I  
Sbjct: 172 -MAGHQARVG--CLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT 212

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 10/72 (13%), Positives = 28/72 (38%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
            + +W  S    ++ V +   +  V     +PDGR ++   ++  ++ W       ++  
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387

Query: 222 RGGHRSRVGSLA 233
               ++   S+ 
Sbjct: 388 IPITKTPSSSIT 399

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  158 bits (402), Expect = 5e-42
 Identities = 45/282 (15%), Positives = 92/282 (32%), Gaps = 28/282 (9%)

Query: 157  IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
              +      V LW+       ++         V  V ++PDG       ++  +++W++ 
Sbjct: 855  AVIALSQYCVELWNIDSRL--KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912

Query: 214  ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD-HIVETYRGHNQEV 270
               +   +          + +  N  ++        +     ++      +       +V
Sbjct: 913  KVCKNSAIVLKQ---EIDVVFQENETMVLAVDNIRGL-----QLIAGKTGQIDYLPEAQV 964

Query: 271  CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
                 S   + +A G  D  + I +     +N   +       H  AV+ I +       
Sbjct: 965  SCCCLSPHLEYVAFGDEDGAIKIIE---LPNN---RVFSSGVGHKKAVRHIQFTA-DGKT 1017

Query: 331  LATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390
            L +     D  I+ WN  TG  +        V      ++ R L  S   T   + +W  
Sbjct: 1018 LIS--SSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGT---VKVWNV 1072

Query: 391  PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             +     + + H   VL  A S D    +S +AD+T + W+ 
Sbjct: 1073 ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  149 bits (377), Expect = 8e-39
 Identities = 46/288 (15%), Positives = 83/288 (28%), Gaps = 70/288 (24%)

Query: 157  IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
            +   S    + +W+   G   + V +      V       D R +     +  V++W+  
Sbjct: 1018 LISSSEDSVIQVWNWQTG---DYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVI 1073

Query: 214  ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHN 267
              R  R     H+  V S A   +    ++   D        ++        +   +GHN
Sbjct: 1074 TGRIERDFTC-HQGTVLSCAISSDATKFSSTSADK-----TAKIWSFDLLSPLHELKGHN 1127

Query: 268  QEVCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
              V    +S  G  LA+G ++  + IW+     +  S +          H   V  + + 
Sbjct: 1128 GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187

Query: 325  PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
            P  S  L + GG     +K+WN  TG                                  
Sbjct: 1188 P-DSKTLVSAGG----YLKWWNVATGDSS------------------------------- 1211

Query: 385  LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                             + + +  +  SPD  T  +      L    V
Sbjct: 1212 ------------QTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  148 bits (376), Expect = 1e-38
 Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 66/281 (23%)

Query: 157  IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
            +        + L     G    L         V+    +P   ++A G  +  +++ +  
Sbjct: 937  VLAVDNIRGLQLIAGKTGQIDYLPE-----AQVSCCCLSPHLEYVAFGDEDGAIKIIELP 991

Query: 214  ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
             NR   +  G H+  V  + +  +   L +   D +I   + +  D++    + H + V 
Sbjct: 992  NNRVFSSGVG-HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVK 1048

Query: 272  GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
              +     + L S   D  + +W+     +    +       H   V + A     +   
Sbjct: 1049 DFRLLQDSR-LLSWSFDGTVKVWN---VITG---RIERDFTCHQGTVLSCAISS-DATKF 1100

Query: 332  ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
            ++     D+  K W+    + L                                      
Sbjct: 1101 SSTSA--DKTAKIWSFDLLSPL-------------------------------------- 1120

Query: 392  SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                  EL GH   V   A S DG  +A+   +  +R WNV
Sbjct: 1121 -----HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  142 bits (359), Expect = 2e-36
 Identities = 54/295 (18%), Positives = 100/295 (33%), Gaps = 74/295 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI--GLNNCQVQLWD 211
           IA  S    V +WD++ G    + T D+ +  V   ++     H+ +  G N+  ++LWD
Sbjct: 672 IATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729

Query: 212 STANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLI------------INNDVRVRD 257
                   T+ G H + V    +  ++ +L +   DG +              N  R   
Sbjct: 730 LNQKECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788

Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
              +        V    WSA G ++     + +L ++D  + +S  +         H S 
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFD--IHTSGLL---AEIHTGHHST 842

Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
           ++   + P   +L          C++ WN  +   +                        
Sbjct: 843 IQYCDFSP-YDHLAVIALS--QYCVELWNIDSRLKV------------------------ 875

Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                              A+  GH S V  +  SPDG +  +A+ D+T+R W  
Sbjct: 876 -------------------ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  138 bits (350), Expect = 3e-35
 Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 56/284 (19%)

Query: 164 YLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220
              +  +  T      + V      V    ++ DG+ IA    +  +Q++ +    +L  
Sbjct: 593 LYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD 652

Query: 221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLK 274
           ++  H   V   A+  ++  + T   D  +     ++ D     +V TY  H+++V    
Sbjct: 653 IKA-HEDEVLCCAFSSDDSYIATCSADKKV-----KIWDSATGKLVHTYDEHSEQVNCCH 706

Query: 275 WSASGQQ--LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA 332
           ++       LA+G ND  L +WD +        +  + +  HT++V    + P    LLA
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSP-DDELLA 759

Query: 333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS 392
           +     D  ++ W+  +     S++                                   
Sbjct: 760 SCSA--DGTLRLWDVRSANERKSINVKR------------------------------FF 787

Query: 393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436
           +            V   + S DG  +  AA ++ L F       
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 58/167 (34%)

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
              ++   +   +G+      N   +    R              +  HT AV    +  
Sbjct: 578 RQAKLQAKQEGDTGRLYLEWINKKTIKNLSRL------------VVRPHTDAVYHACFSQ 625

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
                +A+ G   D+ ++ +   TG  L                                
Sbjct: 626 -DGQRIASCGA--DKTLQVFKAETGEKL-------------------------------- 650

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                       ++  H   VL  A S D   +A+ +AD+ ++ W+ 
Sbjct: 651 -----------LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  145 bits (368), Expect = 5e-40
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 61/281 (21%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
            A  S    + LWD  +G   ++ ++D       ++ ++PD +++A G +  +V ++   
Sbjct: 95  AASSSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
           + ++  +L       + S+A+  +   L +G +DG+I   D+     +  T  GH   + 
Sbjct: 153 SGKKEYSLDT-RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL-HTLEGHAMPIR 210

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
            L +S   Q L +  +D  + I+D               L  H S V  +A+CP      
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYD---VQHA---NLAGTLSGHASWVLNVAFCP-DDTHF 263

Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
            +     D+ +K W+  T  C+                                      
Sbjct: 264 VSSSS--DKSVKVWDVGTRTCV-------------------------------------- 283

Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                     H  +V  +  + +G  + S   D+ +  ++ 
Sbjct: 284 -----HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  123 bits (311), Expect = 6e-32
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 72/283 (25%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH----IAIGLNNCQVQLWDSTANRQ 217
             +      G           +  + SV W  + +     +  G  +  V++W     R 
Sbjct: 13  LYFQGTNQYGI--LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL 70

Query: 218 --LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQE 269
               +L  GH+  V S+       I  +  +D  I     R+ D      +++      +
Sbjct: 71  DLQWSLE-GHQLGVVSVDISHTLPIAASSSLDAHI-----RLWDLENGKQIKSIDAGPVD 124

Query: 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
              L +S   Q LA+G +   ++I+           +  + L+     + +IA+ P    
Sbjct: 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILSIAYSP-DGK 177

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389
            LA+  G  D  I  ++  TG  L                                    
Sbjct: 178 YLAS--GAIDGIINIFDIATGKLL------------------------------------ 199

Query: 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                    L GH   +  +  SPD   + +A+ D  ++ ++V
Sbjct: 200 -------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  114 bits (287), Expect = 1e-28
 Identities = 40/248 (16%), Positives = 72/248 (29%), Gaps = 70/248 (28%)

Query: 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW------NNHILTTGGMDGLIIN 250
           H              +      +  +  H   + S+AW      N+  + TG +D L+  
Sbjct: 4   HHHHSSRENLYFQGTNQYGILFKQEQ-AHDDAIWSVAWGTNKKENSETVVTGSLDDLV-- 60

Query: 251 NDVRV------RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
              +V      R  +  +  GH   V  +  S +    AS   D  + +WD         
Sbjct: 61  ---KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----- 112

Query: 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364
            + +  ++        +A+ P  S  LAT  G     +  +   +G              
Sbjct: 113 -KQIKSIDAGPVDAWTLAFSP-DSQYLAT--GTHVGKVNIFGVESGKKE----------- 157

Query: 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424
                                             L      +L +A SPDG  +AS A D
Sbjct: 158 --------------------------------YSLDTRGKFILSIAYSPDGKYLASGAID 185

Query: 425 ETLRFWNV 432
             +  +++
Sbjct: 186 GIINIFDI 193

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 23/200 (11%), Positives = 52/200 (26%), Gaps = 55/200 (27%)

Query: 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS----GQQLASGGNDNLLH 292
           H       + L      +    + +  + H+  +  + W  +     + + +G  D+L+ 
Sbjct: 3   HHHHHSSRENLYFQGTNQ-YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK 61

Query: 293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352
           +W         +      LE H   V ++        + A+     D  I+ W+   G  
Sbjct: 62  VWK---WRDERL-DLQWSLEGHQLGVVSVDISH-TLPIAAS--SSLDAHIRLWDLENGKQ 114

Query: 353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS 412
           +                                             +         +A S
Sbjct: 115 I-------------------------------------------KSIDAGPVDAWTLAFS 131

Query: 413 PDGCTVASAAADETLRFWNV 432
           PD   +A+      +  + V
Sbjct: 132 PDSQYLATGTHVGKVNIFGV 151

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  146 bits (371), Expect = 6e-40
 Identities = 48/254 (18%), Positives = 86/254 (33%), Gaps = 38/254 (14%)

Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILT 240
           P++   W  D   IAI  NN +V +++ + N+  Q+  L+  H  +V  + W  +++ + 
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIV 68

Query: 241 TGGMDGLII--NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM 298
           T G D          R     +      N+    ++W+ + ++ A G    ++ I     
Sbjct: 69  TCGTDRNAYVWTLKGRTWKPTL-VILRINRAARCVRWAPNEKKFAVGSGSRVISICY--F 125

Query: 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358
              N      H  +   S V ++ W P  S LLA G    D   + ++ +          
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSC--DFKCRIFSAYIKEVEERPAP 182

Query: 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
                                         K P    M E S     V  +  S +G  V
Sbjct: 183 TPWG-------------------------SKMPFGELMFESSSSCGWVHGVCFSANGSRV 217

Query: 419 ASAAADETLRFWNV 432
           A  + D T+   + 
Sbjct: 218 AWVSHDSTVCLADA 231

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score =  131 bits (331), Expect = 2e-34
 Identities = 48/309 (15%), Positives = 94/309 (30%), Gaps = 49/309 (15%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I         Y+W     T    + +   N     V WAP+ +  A+G  +  + +    
Sbjct: 67  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126

Query: 214 ANRQLRTLRG---GHRSRVGSLAW--NNHILTTGGMDGLI----------------INND 252
                   +      RS V SL W  N+ +L  G  D                       
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186

Query: 253 VRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
            ++    ++         V G+ +SA+G ++A   +D+ + + D   A        +  L
Sbjct: 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD---ADKK---MAVATL 240

Query: 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL----NSVDTGSQVCALLW 367
              T  + A+ +   +S+L+A G    D     +   + A        +D   Q      
Sbjct: 241 ASETLPLLAVTFIT-ESSLVAAGH---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ--- 293

Query: 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG----CTVASAAA 423
            +            +   +     +   +   S H + V  ++    G        +   
Sbjct: 294 -RGLTARERFQNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGM 350

Query: 424 DETLRFWNV 432
           D  +  W+V
Sbjct: 351 DGGMSIWDV 359

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 48/172 (27%)

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
             +    + +    W+    Q+A   N++ +HI++    S N   Q +H L+EH   V  
Sbjct: 2   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYE---KSGNKWVQ-VHELKEHNGQVTG 57

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           + W P  SN + T   G DR    W          +   +    L               
Sbjct: 58  VDWAP-DSNRIVT--CGTDRNAYVWT---------LKGRTWKPTL--------------- 90

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                             +         +  +P+    A  +    +     
Sbjct: 91  -----------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 38/219 (17%)

Query: 157 IALGS---TVYLWDASDGTTSE----------------LVTVDDENGPVTSVNWAPDGRH 197
           +A GS      ++ A      E                +       G V  V ++ +G  
Sbjct: 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 216

Query: 198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLII-NNDVR 254
           +A   ++  V L D+     + TL       + ++ +   + ++  G     ++   D  
Sbjct: 217 VAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAGHDCFPVLFTYDS- 274

Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
                  ++ G               +             D+  +S  S          H
Sbjct: 275 --AAGKLSFGGRLDVPKQSSQRGLTARERFQN-------LDKKASSEGSAAAGAGLDSLH 325

Query: 315 TSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTG 350
            ++V  I+       + +   T G   D  +  W+  + 
Sbjct: 326 KNSVSQISVLSGGKAKCSQFCTTGM--DGGMSIWDVRSL 362

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  144 bits (366), Expect = 5e-39
 Identities = 54/306 (17%), Positives = 105/306 (34%), Gaps = 47/306 (15%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH---IAIGLNNCQVQLW 210
               S   T+ +WD     T +   V +    V S + +P       +A+G    +VQL 
Sbjct: 115 FTSSSFDKTLKVWDT---NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171

Query: 211 DSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLI---------------INND 252
           D  +      L+G HR  + +++W+   ++IL T   D  +                 ++
Sbjct: 172 DLKSGSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230

Query: 253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL--HR 310
            +    +      HN +V GL +++ G  L + G DN + +W+   +S+   T       
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN---SSNGENTLVNYGKV 287

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWN 368
                  +K    C   S+            I  +  ++G  +  +  G    V   ++ 
Sbjct: 288 CNNSKKGLKFTVSCGC-SSEFVFVPY--GSTIAVYTVYSGEQITML-KGHYKTVDCCVFQ 343

Query: 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAADE-T 426
            N +EL S        +  W       + E +            +P      S++ +E  
Sbjct: 344 SNFQELYSGSR--DCNILAWV----PSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGG 397

Query: 427 LRFWNV 432
              W+ 
Sbjct: 398 TSAWSH 403

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  126 bits (318), Expect = 2e-32
 Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 71/303 (23%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDS 212
           + L     T  +         +        G + +++  P +GR++  G ++  + L+D 
Sbjct: 16  LRLRRAESTRRVLGLELNK--DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDL 73

Query: 213 TANRQLRTLRG------------GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD 257
             + +                   HR  V ++ W      + T+   D  +     +V D
Sbjct: 74  ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL-----KVWD 128

Query: 258 HIVET-----YRGHNQEVCGLKWSASGQQ---LASGGNDNLLHIWDRSMASSNSVTQWLH 309
               T          + V     S    +   +A G     + + D     S       H
Sbjct: 129 --TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD---LKS---GSCSH 180

Query: 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
            L+ H   + A++W P    +LAT     D  +K W+                       
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASA--DSRVKLWDVRRA------------------S 220

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
                L  H   ++Q            +  + H  +V  +  + DG  + +   D  +R 
Sbjct: 221 GCLITLDQHNGKKSQ---------AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271

Query: 430 WNV 432
           WN 
Sbjct: 272 WNS 274

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 32/209 (15%)

Query: 162 TVYLWDASDGTTSELVTVDDE--------------NGPVTSVNWAPDGRHIAIGLNNCQV 207
            V LWD    +   +                    NG V  + +  DG H+     + ++
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269

Query: 208 QLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINND--VRVRD----HIVE 261
           +LW+S+         G              +      + + +     + V        + 
Sbjct: 270 RLWNSSNGENTLVNYG-KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328

Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321
             +GH + V    + ++ Q+L SG  D  +  W                + +        
Sbjct: 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV---------PSLYEPVPDDDETTTKS 379

Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTG 350
              P       +     +     W+    
Sbjct: 380 QLNP-AFEDAWS-SSDEEGGTSAWSHPQF 406

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 12/101 (11%), Positives = 31/101 (30%), Gaps = 9/101 (8%)

Query: 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
           SS  + +  GST+ ++    G   ++  +      V    +  + + +  G  +C +  W
Sbjct: 304 SSEFVFVPYGSTIAVYTVYSGE--QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361

Query: 211 DSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLI 248
             +    +                N       ++   +G  
Sbjct: 362 VPSLYEPVP----DDDETTTKSQLNPAFEDAWSSSDEEGGT 398

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  143 bits (362), Expect = 5e-39
 Identities = 61/292 (20%), Positives = 112/292 (38%), Gaps = 38/292 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD-- 211
           +   S    + +WD+   TT+++  +   +  V +  +AP G ++A G  +    +++  
Sbjct: 70  LLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127

Query: 212 --STANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETY 263
                 R  R L G H   +    +  +N I+T    D         + D        T+
Sbjct: 128 TREGNVRVSRELAG-HTGYLSCCRFLDDNQIVT-SSGD-----TTCALWDIETGQQTTTF 180

Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
            GH  +V  L  +   +   SG  D    +WD  +               H S + AI +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--VREG----MCRQTFTGHESDINAICF 234

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV---DTGSQVCALLWNKNERELLS-SHG 379
            P   N  ATG    D   + ++      L +    +    + ++ ++K+ R LL+    
Sbjct: 235 FP-NGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 380 FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           F      +W      +   L+GH +RV  +  + DG  VA+ + D  L+ WN
Sbjct: 292 FN---CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  121 bits (307), Expect = 2e-31
 Identities = 40/255 (15%), Positives = 86/255 (33%), Gaps = 59/255 (23%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
              + +++W  D R +     + ++ +WDS    ++  +     S V + A+  + + + 
Sbjct: 55  LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVA 113

Query: 241 TGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
            GG+D +    +++ R+    +     GH   +   ++    Q + +   D    +WD  
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE 172

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357
                   Q       HT  V +++  P  + L  +G    D   K W+   G C  +  
Sbjct: 173 TG------QQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC--DASAKLWDVREGMCRQT-- 221

Query: 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
                                                     +GH S +  +   P+G  
Sbjct: 222 -----------------------------------------FTGHESDINAICFFPNGNA 240

Query: 418 VASAAADETLRFWNV 432
            A+ + D T R +++
Sbjct: 241 FATGSDDATCRLFDL 255

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  114 bits (289), Expect = 9e-29
 Identities = 46/265 (17%), Positives = 84/265 (31%), Gaps = 58/265 (21%)

Query: 170 DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV 229
           D    E   + ++               I        +        R  RTLRG H +++
Sbjct: 5   DQLRQEAEQLKNQIRDARKACADATLSQITNN-----IDPVGRIQMRTRRTLRG-HLAKI 58

Query: 230 GSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN 287
            ++ W  ++ +L +   DG +I  D    + +       +  V    ++ SG  +A GG 
Sbjct: 59  YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV-HAIPLRSSWVMTCAYAPSGNYVACGGL 117

Query: 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347
           DN+  I++  + +     +    L  HT  +    +     N + T  G  D     W+ 
Sbjct: 118 DNICSIYN--LKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSG--DTTCALWDI 171

Query: 348 HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407
            TG                                                 +GHT  V+
Sbjct: 172 ETGQQT-------------------------------------------TTFTGHTGDVM 188

Query: 408 FMAQSPDGCTVASAAADETLRFWNV 432
            ++ +PD     S A D + + W+V
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDV 213

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 45/143 (31%)

Query: 156 AIALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           A A GS   T  L+D          + D+    +TSV+++  GR +  G ++    +WD+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG 272
               +   L  GH +RV  L                                        
Sbjct: 300 LKADRAGVLA-GHDNRVSCLG--------------------------------------- 319

Query: 273 LKWSASGQQLASGGNDNLLHIWD 295
              +  G  +A+G  D+ L IW+
Sbjct: 320 --VTDDGMAVATGSWDSFLKIWN 340

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  142 bits (361), Expect = 3e-38
 Identities = 58/300 (19%), Positives = 109/300 (36%), Gaps = 26/300 (8%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD-- 211
            A  S   ++ LW      + + +     +     ++W+ + + IA  L+N  ++L+   
Sbjct: 38  DANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTN 97

Query: 212 --STANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLI----INNDVRVRDHIVE- 261
             + A   +      H S V ++ +N   +++L +GG +G I    +N       +    
Sbjct: 98  EANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156

Query: 262 ---TYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
                     EV  L W+ S     AS G+ N   IWD           +          
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216

Query: 318 VKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGAC-LNSVDTG--SQVCALLWNKNERE 373
           +  + W P  S  +AT  G   D  I  W+       L +++ G    + +L W   +  
Sbjct: 217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH 276

Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT-VASAAADETLRFWNV 432
           LL S G   N + LW   S  ++++     +       +P+     A A+ D  +    +
Sbjct: 277 LLLSSGR-DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  139 bits (353), Expect = 4e-37
 Identities = 55/294 (18%), Positives = 105/294 (35%), Gaps = 28/294 (9%)

Query: 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220
           S V L + S   T         +     V+    G   A    +  ++LW   A    + 
Sbjct: 5   SMVKLAEFSRTAT----FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP 60

Query: 221 LRG-GHRSRVGSLAW--NNHILTTGGMDGLII---NNDVRVRDHIVETYRGHNQEVCGLK 274
           +      S+   L W  NN I+     +G +     N+     + +  +  H+  V  +K
Sbjct: 61  IASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120

Query: 275 WSAS-GQQLASGGNDNLLHIWD---RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
           ++A     LASGGN+  + IWD    + + SN       +       V ++AW    +++
Sbjct: 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHV 180

Query: 331 LATGGGGGDRCIKFWNTHTGACLNSVDTG-------SQVCALLWN-KNERELLSSHGFTQ 382
            A+   G       W+      +  +           Q+  + W+ KN   + ++ G   
Sbjct: 181 FAS--AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238

Query: 383 NQ-LTLW--KYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432
           +  + +W  +  +        GH   +L +     D   + S+  D T+  WN 
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  128 bits (324), Expect = 4e-33
 Identities = 53/321 (16%), Positives = 108/321 (33%), Gaps = 50/321 (15%)

Query: 157 IALGS---TVYLWDASDGTTSE--LVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLW 210
           IA      ++ L+  ++   +   +    + +  V +V +       +A G NN ++ +W
Sbjct: 82  IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141

Query: 211 DSTANRQLRTLRG--------GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHI 259
           D     +  +                V SLAWN    H+  + G        D++ +  +
Sbjct: 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201

Query: 260 V-----ETYRGHNQEVCGLKWSASGQQL---ASGG-NDNLLHIWDRSMASSNSVTQWLHR 310
           +         G  Q++  ++W          A+G  ND  + IWD  + ++N+  Q L  
Sbjct: 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD--LRNANTPLQTL-- 257

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNK 369
            + H   + ++ WC    +LL + G   D  +  WN  +   L+             +  
Sbjct: 258 NQGHQKGILSLDWCHQDEHLLLSSGR--DNTVLLWNPESAEQLSQFPARGNWCFKTKFAP 315

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
              +L +      N++ +           L   T        + D     +   +    F
Sbjct: 316 EAPDLFAC-ASFDNKIEVQ---------TLQNLT-------NTLDEQETETKQQESETDF 358

Query: 430 WNVFGAPQVISKSAPKPNREP 450
           WN     +   K +    + P
Sbjct: 359 WNNVSREESKEKPSVFHLQAP 379

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score =  117 bits (296), Expect = 3e-29
 Identities = 46/300 (15%), Positives = 89/300 (29%), Gaps = 40/300 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGP-------VTSVNWAPDGRHI-AIGLNNC 205
           +A G     +++WD +  T S         G        V S+ W     H+ A   ++ 
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188

Query: 206 QVQLWDSTANRQLRTLR-----GGHRSRVGSLAW---NNHILTTG---GMDGLIINNDVR 254
              +WD  A +++  L       G + ++  + W   N+  + T      D  I+  D+R
Sbjct: 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248

Query: 255 VRDHIVETY-RGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE 312
             +  ++T  +GH + +  L W       L S G DN + +W+     S      L +  
Sbjct: 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN---PESAEQ---LSQFP 302

Query: 313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372
              +      + P   +L A      D  I+                             
Sbjct: 303 ARGNWCFKTKFAPEAPDLFACASF--DNKIEVQTLQNLTNTLDEQETETKQQESETDFWN 360

Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
            +       +  +   + P+                   +  G  V      + +   N 
Sbjct: 361 NVSREESKEKPSVFHLQAPTWYG--------EPSPAAHWAFGGKLVQITPDGKGVSITNP 412

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 22/197 (11%), Positives = 56/197 (28%), Gaps = 51/197 (25%)

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT--SAVKAIA 322
            H++    +  + SG   A+   D+ L +W    A           +      S    + 
Sbjct: 21  SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA------DSEKPIASLQVDSKFNDLD 74

Query: 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ 382
           W    + ++A  G   +  ++ ++          +  +     +                
Sbjct: 75  WSH-NNKIIA--GALDNGSLELYS---------TNEANNAINSM---------------- 106

Query: 383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQVISK 441
                         A  S H+S V  +  +      +AS   +  +  W++    +  S 
Sbjct: 107 --------------ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN 152

Query: 442 SAPKPNREPFAQLNRIR 458
             P    +  + ++ + 
Sbjct: 153 YTPLTPGQSMSSVDEVI 169

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  137 bits (348), Expect = 5e-37
 Identities = 56/255 (21%), Positives = 88/255 (34%), Gaps = 52/255 (20%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR--TLRGGHRSRVGSLAW--NNHI 238
           +     + W P G  +A    + ++++W +  +  +    L  GH+  V  +AW    + 
Sbjct: 16  DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75

Query: 239 LTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
           L +   D           D   V T  GH  EV  + W+ SG  LA+   D  + +W+  
Sbjct: 76  LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE-- 133

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357
                   + +  L  HT  VK + W P    LLA+     D  +K +           +
Sbjct: 134 -VDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASY--DDTVKLYR---------EE 180

Query: 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
               VC                                 A L GH S V  +A  P G  
Sbjct: 181 EDDWVC--------------------------------CATLEGHESTVWSLAFDPSGQR 208

Query: 418 VASAAADETLRFWNV 432
           +AS + D T+R W  
Sbjct: 209 LASCSDDRTVRIWRQ 223

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  134 bits (339), Expect = 1e-35
 Identities = 56/287 (19%), Positives = 97/287 (33%), Gaps = 47/287 (16%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWD- 211
           +A       + +W     +      + +     V  V W+P G ++A    +    +W  
Sbjct: 31  LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90

Query: 212 -STANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLII--NNDVRVRDHIVETYRGH 266
                  + TL G H + V S+AW  + ++L T   D  +     D       V     H
Sbjct: 91  NQDDFECVTTLEG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149

Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
            Q+V  + W  S + LAS   D+ + ++                LE H S V ++A+ P 
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC----CATLEGHESTVWSLAFDP- 204

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
               LA+     DR ++ W  +                              G  Q    
Sbjct: 205 SGQRLASCSD--DRTVRIWRQYLP----------------------------GNEQGVAC 234

Query: 387 LWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
               PS   +  LSG H+  +  +A       +A+A  D+ +R +  
Sbjct: 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  133 bits (337), Expect = 2e-35
 Identities = 59/296 (19%), Positives = 100/296 (33%), Gaps = 58/296 (19%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +A  S   T  +W  +      + T++     V SV WAP G  +A    +  V +W+  
Sbjct: 76  LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135

Query: 214 ANRQ---LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI-VETYRGHN 267
              +   +  L   H   V  + W  +  +L +   D  +        D +   T  GH 
Sbjct: 136 EEDEYECVSVLNS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE 194

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT---------QWLHRLE-EHTSA 317
             V  L +  SGQ+LAS  +D  + IW + +  +             + +  L   H+  
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254

Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
           +  IAWC   +  LAT  G  D  I+ +           D  S      ++         
Sbjct: 255 IYDIAWCQ-LTGALATACG--DDAIRVFQ---------EDPNSDPQQPTFSLTAHLH--- 299

Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432
                                   H+  V  +A +P +   +AS + D  + FW  
Sbjct: 300 ----------------------QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score =  121 bits (306), Expect = 4e-31
 Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 29/223 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTV-DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           +A  S   +V++W+  +    E V+V +     V  V W P    +A    +  V+L+  
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179

Query: 213 TANRQ--LRTLRGGHRSRVGSLAW--NNHILTTGGMDG--------LIINNDVRVRDHIV 260
             +      TL G H S V SLA+  +   L +   D         L  N          
Sbjct: 180 EEDDWVCCATLEG-HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238

Query: 261 ETYR-------GHNQEVCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSVTQWLHR 310
            +++        H++ +  + W      LA+   D+ + ++     S     + +   H 
Sbjct: 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
            + H+  V  +AW P +  LLA+     D  + FW       L
Sbjct: 299 HQAHSQDVNCVAWNPKEPGLLASCSD--DGEVAFWKYQRPEGL 339

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 11/78 (14%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE-------NGPVTSVNWAP-DGRHIAIGLNNC 205
           +A       + ++     +  +  T           +  V  V W P +   +A   ++ 
Sbjct: 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326

Query: 206 QVQLWDSTANRQLRTLRG 223
           +V  W       L     
Sbjct: 327 EVAFWKYQRPEGLHHHHH 344

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  136 bits (345), Expect = 1e-36
 Identities = 45/286 (15%), Positives = 88/286 (30%), Gaps = 72/286 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           + +G    T+ +WD +  T      +        ++  +PD +      ++  + +WD  
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYR-----GH 266
               +R  + GH      +    +   L TGG+D     N VR  D  +   R       
Sbjct: 172 NQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLD-----NTVRSWD--LREGRQLQQHDF 223

Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
             ++  L +  +G+ LA G   + + +   +           ++L  H S V ++ +   
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN-------KPDKYQLHLHESCVLSLKFAY- 275

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
                 +   G D  +  W T  GA +                                 
Sbjct: 276 CGKWFVS--TGKDNLLNAWRTPYGASI--------------------------------- 300

Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                        S  +S VL    S D   + + + D+    + V
Sbjct: 301 -----------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  135 bits (342), Expect = 4e-36
 Identities = 52/289 (17%), Positives = 85/289 (29%), Gaps = 73/289 (25%)

Query: 157 IALGS--TVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLNNCQVQLWD 211
           +  G    V +WD S       V+  D       + S    PDG  + +G     + +WD
Sbjct: 66  VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

Query: 212 --STANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETY 263
             +   R    L         +LA   ++ +  +   DG I      V D     +V  +
Sbjct: 126 LAAPTPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNI-----AVWDLHNQTLVRQF 179

Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +GH      +  S  G +L +GG DN +  WD              +  + TS + ++ +
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-------LREGRQLQQHDFTSQIFSLGY 232

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383
           CP     LA G       ++  + +                                   
Sbjct: 233 CP-TGEWLAVGME--SSNVEVLHVNKPDKYQ----------------------------- 260

Query: 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                          L  H S VL +  +  G    S   D  L  W  
Sbjct: 261 ---------------LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  119 bits (300), Expect = 2e-30
 Identities = 42/255 (16%), Positives = 73/255 (28%), Gaps = 58/255 (22%)

Query: 184 GPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
            P  S +   DG+   +    +  +        RQ+ TL   H   V ++        + 
Sbjct: 10  KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL--NHGEVVCAVTISNPTRHVY 67

Query: 241 TGGMDGLII---NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
           TGG   + +   ++               +  +   K    G  L  GG  + L IWD +
Sbjct: 68  TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357
             +     +    L     A  A+A  P  S +  +     D  I  W+ H    +    
Sbjct: 128 APTP----RIKAELTSSAPACYALAISP-DSKVCFS--CCSDGNIAVWDLHNQTLV---- 176

Query: 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
                                                   +  GHT     +  S DG  
Sbjct: 177 ---------------------------------------RQFQGHTDGASCIDISNDGTK 197

Query: 418 VASAAADETLRFWNV 432
           + +   D T+R W++
Sbjct: 198 LWTGGLDNTVRSWDL 212

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 67.9 bits (167), Expect = 1e-12
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 10/128 (7%)

Query: 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
           +    +    +         +        D  I          +N+++ G  VCA+  + 
Sbjct: 4   QGAMGSKPAYSFHVTA-DGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVVCAVTISN 61

Query: 370 NERELLSSHGFTQNQLTLW-----KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424
             R + +        + +W        S V   +     + +      PDGCT+      
Sbjct: 62  PTRHVYTGGKGC---VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118

Query: 425 ETLRFWNV 432
            TL  W++
Sbjct: 119 STLSIWDL 126

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  135 bits (343), Expect = 6e-36
 Identities = 59/307 (19%), Positives = 101/307 (32%), Gaps = 82/307 (26%)

Query: 157 IALGS---TVYLWDASDGTTS-----ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
           +       T   +   +         EL    D    V  V ++ DG ++A G N    Q
Sbjct: 30  VPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQ 88

Query: 209 LWDSTANRQLRTLRG-----------------GHRSRVGSLAW--NNHILTTGGMDGLII 249
           ++  +    +  L                        + S+ +  +   L TG  D LI 
Sbjct: 89  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI- 147

Query: 250 NNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305
               R+ D     IV   +GH Q++  L +  SG +L SG  D  + IWD         T
Sbjct: 148 ----RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-------T 196

Query: 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCAL 365
                       V  +A  P     +A   G  DR ++ W++ TG  +  +D+ ++    
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAA--GSLDRAVRVWDSETGFLVERLDSENES--- 251

Query: 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE 425
                                             +GH   V  +  + DG +V S + D 
Sbjct: 252 ---------------------------------GTGHKDSVYSVVFTRDGQSVVSGSLDR 278

Query: 426 TLRFWNV 432
           +++ WN+
Sbjct: 279 SVKLWNL 285

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  128 bits (324), Expect = 3e-33
 Identities = 49/300 (16%), Positives = 97/300 (32%), Gaps = 74/300 (24%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +A G+    + +WD  +     ++ +      + S+++ P G  +  G  +  V++WD  
Sbjct: 138 LATGAEDRLIRIWDIENRK--IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195

Query: 214 ANRQLRTLRGGHRSRVGSLA---WNNHILTTGGMDGLII------NNDVRVRDHIVETYR 264
             +   TL       V ++A    +   +  G +D  +          V   D   E+  
Sbjct: 196 TGQCSLTL-SIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 253

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWD------RSMASSNSVTQWLHRLEEHTSAV 318
           GH   V  + ++  GQ + SG  D  + +W+      +S + + +          H   V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
            ++A        + +G    DR + FW+  +G  L                         
Sbjct: 314 LSVATTQ-NDEYILSGSK--DRGVLFWDKKSGNPL------------------------- 345

Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVL------FMAQSPDGCTVASAAADETLRFWNV 432
                               L GH + V+        +  P+    A+ + D   R W  
Sbjct: 346 ------------------LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  119 bits (301), Expect = 5e-30
 Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 73/305 (23%)

Query: 157 IALGS--TVYLWDASDG----------------TTSELVTVDDENGPVTSVNWAPDGRHI 198
           +A G   T  ++  SDG                      +    +  + SV ++PDG+ +
Sbjct: 79  LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138

Query: 199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVR 256
           A G  +  +++WD    + +  L+G H   + SL +  +   L +G  D       VR+ 
Sbjct: 139 ATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIW 192

Query: 257 D----HIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
           D        T    +  V  +  S   G+ +A+G  D  + +WD   + +  + + L   
Sbjct: 193 DLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWD---SETGFLVERLDSE 248

Query: 312 EE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW 367
            E    H  +V ++ +       + +G    DR +K WN                     
Sbjct: 249 NESGTGHKDSVYSVVFTR-DGQSVVSGSL--DRSVKLWNLQNA----------------- 288

Query: 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETL 427
                          N+       S        GH   VL +A + +   + S + D  +
Sbjct: 289 --------------NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334

Query: 428 RFWNV 432
            FW+ 
Sbjct: 335 LFWDK 339

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score =  100 bits (251), Expect = 2e-23
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 39/223 (17%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDS 212
           +  GS   TV +WD   G     +T+  E+G VT+V  +P DG++IA G  +  V++WDS
Sbjct: 180 LVSGSGDRTVRIWDLRTGQ--CSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDS 236

Query: 213 TANRQLRTLRG------GHRSRVGSLAW--NNHILTTGGMDGLI-----------INNDV 253
                +  L        GH+  V S+ +  +   + +G +D  +            ++  
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296

Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
                   TY GH   V  +  + + + + SG  D  +  WD+           L  L+ 
Sbjct: 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------NPLLMLQG 350

Query: 314 HTSAVKAIAWCPFQS-----NLLATGGGGGDRCIKFWNTHTGA 351
           H ++V ++A     S     N+ ATG G  D   + W     A
Sbjct: 351 HRNSVISVAVANGSSLGPEYNVFATGSG--DCKARIWKYKKIA 391

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 90.7 bits (226), Expect = 4e-20
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 30/172 (17%)

Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT-QWLHRLEEHTSAVKA 320
               H++ +         Q +           +     +        LH+  +HTS V  
Sbjct: 10  QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 69

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           + +       LAT   G ++  + +    G+ +                     LS    
Sbjct: 70  VKFSN-DGEYLAT---GCNKTTQVYRVSDGSLVAR-------------------LSDDS- 105

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                   K P  +  +        +  +  SPDG  +A+ A D  +R W++
Sbjct: 106 -----AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 5/37 (13%), Positives = 14/37 (37%)

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA 435
            + H+  +       D  +V  A   +T  ++ ++  
Sbjct: 11  RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNP 47

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  139 bits (353), Expect = 7e-36
 Identities = 68/383 (17%), Positives = 127/383 (33%), Gaps = 65/383 (16%)

Query: 95  PVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNV 154
            +  IP+M +   +  ++V         R    ++                 +   +  V
Sbjct: 329 IMPNIPQMSAFWYAVRTAVIN---AASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMV 385

Query: 155 LAIAL----------GS---TVYLWDASDG---TTSELVTVDDENGPVTSVNWAPDGRHI 198
            AIA            S   ++ LW  +            +   +  V  V  + DG+  
Sbjct: 386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA 445

Query: 199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVR 256
             G  + +++LWD  A    R    GH   V S+A+  +N  + +   D       +++ 
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRD-----RTIKLW 499

Query: 257 D-------HIVETYRGHNQEVCGLKWSASGQQ--LASGGNDNLLHIWDRSMASSNSVTQW 307
           +        I E   GH   V  +++S +  Q  + S   D  + +W+    S+    + 
Sbjct: 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN---LSNC---KL 553

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCAL-- 365
              L  HT  V  +A  P   +L A+  GG D  +  W+   G  L S++  S + AL  
Sbjct: 554 RSTLAGHTGYVSTVAVSP-DGSLCAS--GGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610

Query: 366 ----------------LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409
                           +W+   + ++       +     +       A           +
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVED--LKVDLKAEAEKADNSGPAATKRKVIYCTSL 668

Query: 410 AQSPDGCTVASAAADETLRFWNV 432
             S DG T+ S   D  +R W +
Sbjct: 669 NWSADGSTLFSGYTDGVIRVWGI 691

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  105 bits (265), Expect = 2e-24
 Identities = 38/267 (14%), Positives = 71/267 (26%), Gaps = 52/267 (19%)

Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG--GHRSRV 229
            T E +   +++ P+ +V        +A         + ++     +  +         V
Sbjct: 285 LTDEGLEAVNKDKPLGAVALKSYEEELAKDPRI-AATMENAQKGEIMPNIPQMSAFWYAV 343

Query: 230 GSLAWNNHILT-TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGN 287
            +   N      T          +      +  T R H   V  +     +   + S   
Sbjct: 344 RTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASR 403

Query: 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347
           D  + +W  +            RL  H+  V+ +           +  G  D  ++ W+ 
Sbjct: 404 DKSIILWKLTKDDKAY-GVAQRRLTGHSHFVEDVVLSS-DGQFALS--GSWDGELRLWDL 459

Query: 348 HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407
             G                                                  GHT  VL
Sbjct: 460 AAGVST-------------------------------------------RRFVGHTKDVL 476

Query: 408 FMAQSPDGCTVASAAADETLRFWNVFG 434
            +A S D   + SA+ D T++ WN  G
Sbjct: 477 SVAFSLDNRQIVSASRDRTIKLWNTLG 503

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  135 bits (342), Expect = 7e-36
 Identities = 44/310 (14%), Positives = 101/310 (32%), Gaps = 46/310 (14%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +   S   +  +W + +G    L T+D   G + S++     ++   G  +  ++LWD +
Sbjct: 47  LFSCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104

Query: 214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRV----RDHIVETYRGHN 267
             + + T +      V  + ++   +       + +     + +    RD         +
Sbjct: 105 NGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162

Query: 268 QE-------------VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
           +E                  WS  G+ + +G  D  +  +D S     +  +++  ++ H
Sbjct: 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS-----NNYEYVDSIDLH 217

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374
             ++  + + P       T     D      +  T   L   +T   +   +    +  +
Sbjct: 218 EKSISDMQFSP-DLTYFITSSR--DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFI 274

Query: 375 LSSHGFTQNQLTLWKYPSMVKMA------------ELSGHTSRVLFMAQSPDGCTVASAA 422
           +   G     +T          A             + GH   +  +A SP G + AS  
Sbjct: 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334

Query: 423 ADETLRFWNV 432
            D  +R  + 
Sbjct: 335 EDGFIRLHHF 344

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  115 bits (290), Expect = 1e-28
 Identities = 34/268 (12%), Positives = 82/268 (30%), Gaps = 45/268 (16%)

Query: 189 VNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG 246
           +  +    H + G       L+   ++ +   L G H   +  + +N    +L +   D 
Sbjct: 1   MGSSHHHHHHSSG-----ENLYFQGSHMKAIKLTG-HERPLTQVKYNKEGDLLFSCSKDS 54

Query: 247 LIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302
                   V        + T  GH   +  +      +   +G  D  + +WD  +++  
Sbjct: 55  SA-----SVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD--VSNGQ 107

Query: 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG---GGGGDRCIKFWNTHTGACLNSVDTG 359
            V  W     +    VK + + P   N               I  +     +  + +   
Sbjct: 108 CVATW-----KSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161

Query: 360 SQ--------------VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSGHTS 404
           S+                   W+   + +++ H     +++ +   +  +  + +  H  
Sbjct: 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK--DGKISKYDVSNNYEYVDSIDLHEK 219

Query: 405 RVLFMAQSPDGCTVASAAADETLRFWNV 432
            +  M  SPD     +++ D      +V
Sbjct: 220 SISDMQFSPDLTYFITSSRDTNSFLVDV 247

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 98.8 bits (247), Expect = 5e-23
 Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 36/224 (16%)

Query: 161 STVYLWDASDGTTSELVTV-----------DDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209
            ++ +++    + +  +T             +     T   W+  G++I  G  + ++  
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201

Query: 210 WD-STANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVET 262
           +D S     + ++   H   +  + +  +     T   D         + D     +++ 
Sbjct: 202 YDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNS-----FLVDVSTLQVLKK 255

Query: 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS-NSVTQW-------LHRLEEH 314
           Y      +     +   + +  GG      +   S          +       + R++ H
Sbjct: 256 YETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358
              +  +A  P Q    A+  GG D  I+  +          D 
Sbjct: 315 FGPLNTVAISP-QGTSYAS--GGEDGFIRLHHFEKSYFDFKYDV 355

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  138 bits (351), Expect = 8e-36
 Identities = 53/302 (17%), Positives = 109/302 (36%), Gaps = 44/302 (14%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE------NGPVTSVNWAPDGRHIAI--GLNNC 205
           +  G     V +W  +    S  V V+ +       GP++ ++W  +GR + +     + 
Sbjct: 81  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 140

Query: 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLII--NNDVRVRDHIV 260
                   +   L  +  GH  R+ +            T G DG ++             
Sbjct: 141 FGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 199

Query: 261 ETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVT-QWLHRLEEHTSAV 318
            T+      V  +++S  SG+ + + G+D  +  +D         + ++L  +E+    V
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD-------GKSGEFLKYIEDDQEPV 252

Query: 319 KAIAWCPFQSN--LLATGGGGGDRCIKFWNTHTGACLNSV-----DTGSQVCALLWNKNE 371
           +   +     +    AT   G D  I+ W+  T  C+          G+Q   ++   N 
Sbjct: 253 QGGIFALSWLDSQKFAT--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310

Query: 372 RELLS-SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
           R ++S S   T   L  ++      +  +SGH   +  +  +P    + S + D  +  W
Sbjct: 311 R-IISLSLDGT---LNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362

Query: 431 NV 432
           + 
Sbjct: 363 SS 364

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  128 bits (323), Expect = 4e-32
 Identities = 43/307 (14%), Positives = 86/307 (28%), Gaps = 77/307 (25%)

Query: 151 SSNVLAIALGS----TVYLWDASDGTTSELVTVDD-ENGPVTSVNWAP--DGRHIAIGLN 203
                AIA        V   D  D     +V      +  VT+V ++P    +++  G  
Sbjct: 27  DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE 86

Query: 204 NCQVQLWDSTANRQLRTLRG-------GHRSRVGSLAW---NNHILTTGGMDGLIINNDV 253
           + +V +W  T +++  ++              +  ++W      +   G       +N  
Sbjct: 87  SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR----DNFG 142

Query: 254 RVRD----HIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWL 308
                   + +    GH+Q +       S      + G+D  +  +          +   
Sbjct: 143 VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ---GPPFKFSASD 199

Query: 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN 368
               +  S V+ + + P     + T G   DR I  ++  +G  L               
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGS--DRKISCFDGKSGEFL--------------- 242

Query: 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP---DGCTVASAAADE 425
                                         +      V     +    D    A+  AD 
Sbjct: 243 ----------------------------KYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274

Query: 426 TLRFWNV 432
           T+R W+V
Sbjct: 275 TIRVWDV 281

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  119 bits (301), Expect = 3e-29
 Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 77/290 (26%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
            +  S   T+ +   +              G    V  A +    A+  N+  + +  S 
Sbjct: 386 YSSISWDDTLKVNGITKHEF----------GSQPKVASANNDGFTAVLTNDDDLLILQSF 435

Query: 214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
               ++++R        SL+ N     L  G    +   +D+ V   +    R       
Sbjct: 436 TGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK---PS 492

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP------ 325
            +  S S   +A+G     + ++D       S      R    TS + AI+W P      
Sbjct: 493 YISISPSETYIAAGDVMGKILLYDLQ-----SREVKTSRWAFRTSKINAISWKPAEKGAN 547

Query: 326 ---FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ 382
               + +L+ATG    D  I  ++      +                             
Sbjct: 548 EEEIEEDLVATGSL--DTNIFIYSVKRPMKI----------------------------- 576

Query: 383 NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                        +  L+ H   V  +       T+ S+ AD  ++ WNV
Sbjct: 577 -------------IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  113 bits (285), Expect = 3e-27
 Identities = 45/283 (15%), Positives = 90/283 (31%), Gaps = 39/283 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDS 212
            A      T+ +WD +     +  T+D +      V     G   I     +  +  ++ 
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 326

Query: 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET-YRGHNQEVC 271
             +  L+T+ G H   + +L    + L +G  DG I             + ++ H+  + 
Sbjct: 327 GHDEVLKTISG-HNKGITALTV--NPLISGSYDGRI-----MEWS--SSSMHQDHSNLIV 376

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
            L  S   Q+ +S   D+ L +      + +          E  S  K  +         
Sbjct: 377 SLDNS-KAQEYSSISWDDTLKVNG---ITKH----------EFGSQPKVASANN--DGFT 420

Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGS--QVCALLWNKNERELLSSHGFTQNQLTLWK 389
           A      D  +    + TG  + SV   S     +L  N     L    G T     L  
Sbjct: 421 AVLTN--DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE--GNTIQVFKLSD 476

Query: 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                 +       ++  +++ SP    +A+      +  +++
Sbjct: 477 LEVSFDLKT--PLRAKPSYISISPSETYIAAGDVMGKILLYDL 517

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 98.5 bits (246), Expect = 4e-22
 Identities = 34/219 (15%), Positives = 61/219 (27%), Gaps = 54/219 (24%)

Query: 224 GHRSRVGSLAW---NNHILTTGGMDGLIIN-NDVRVRDHIVETYRGHNQE-VCGLKWS-- 276
             R+    L++    N I    G    +   +D   +   V  + GH    V  +K+S  
Sbjct: 16  TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75

Query: 277 ASGQQLASGGNDNLLHIWDRS--MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG 334
              Q L SG     + +W  +    S++         +     +  I+W   +   L   
Sbjct: 76  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVV 134

Query: 335 GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394
           G G D    F +  +G  L                                         
Sbjct: 135 GEGRDNFGVFISWDSGNSL----------------------------------------- 153

Query: 395 KMAELSGHTSRVLFMAQSPDGCT-VASAAADETLRFWNV 432
              E+SGH+ R+              +   D ++ F+  
Sbjct: 154 --GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 97.7 bits (244), Expect = 6e-22
 Identities = 32/289 (11%), Positives = 71/289 (24%), Gaps = 81/289 (28%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +  GS    +  W +S           D +  + S++     +  +    +  +++   T
Sbjct: 350 LISGSYDGRIMEWSSSSMHQ-------DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT 401

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
            +        G + +V S   +         D L+I       D I             L
Sbjct: 402 KHEF------GSQPKVASANNDGFTAVLTNDDDLLIL-QSFTGDIIKSVRLNSPGSAVSL 454

Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
             +     L  G    +  + D        +           +    I+  P     +A 
Sbjct: 455 SQNYVAVGLEEGNTIQVFKLSD--------LEVSFDLKTPLRAKPSYISISP-SETYIAA 505

Query: 334 GGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393
           G       I  ++  +     S                                      
Sbjct: 506 GDV--MGKILLYDLQSREVKTSR------------------------------------- 526

Query: 394 VKMAELSGHTSRVLFMAQSP----------DGCTVASAAADETLRFWNV 432
                 +  TS++  ++  P          +   VA+ + D  +  ++V
Sbjct: 527 -----WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 94.6 bits (236), Expect = 7e-21
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209
            +   + +  G+T+ ++  SD   S  +         + ++ +P   +IA G    ++ L
Sbjct: 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLK-TPLRAKPSYISISPSETYIAAGDVMGKILL 514

Query: 210 WDSTANRQLRTLRGGHRSRVGSLAW------------NNHILTTGGMDGLIINNDVRVRD 257
           +D  +     +      S++ +++W               ++ TG +D  I    V+   
Sbjct: 515 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574

Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
            I++    H   V  L W      L S G D  +  W+
Sbjct: 575 KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 611

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  134 bits (340), Expect = 8e-36
 Identities = 53/317 (16%), Positives = 106/317 (33%), Gaps = 48/317 (15%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE--NGPVTSVNWAPD--GRHIAIGLNNCQVQL 209
           +A  S    + ++     T++  ++      +  + +++WA    GR IA    +  V+L
Sbjct: 26  VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85

Query: 210 WD---------STANRQLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLI-------- 248
           W+              +L TL    +  + S+ +        L   G DG++        
Sbjct: 86  WEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144

Query: 249 ----INNDVRVRDHIVETYRGHNQEVCGLKWS---ASGQQLASGGNDNLLHIWDRSMASS 301
                         +      H Q    L W     S ++LA    +  +          
Sbjct: 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR----GK 200

Query: 302 NSVTQWLHRLEEHTSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVD 357
           +       +L  H S +++I+W P       L+ATG    D  I+ +        L S +
Sbjct: 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK--DGRIRIFKITEKLSPLASEE 258

Query: 358 TGSQVCALLWNKNEREL--LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG 415
           + +       + +        S   T+ +  L     +  ++E   H   V  ++ +  G
Sbjct: 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318

Query: 416 CTVASAAADETLRFWNV 432
             ++SA  D  +R W  
Sbjct: 319 TILSSAGDDGKVRLWKA 335

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score =  106 bits (268), Expect = 7e-26
 Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 75/281 (26%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWD----STANRQLRTLRGGHRSRVGSLAW---- 234
           +  V  V +   GRH+A   ++  ++++     ++      + R  H S + ++ W    
Sbjct: 11  DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPE 69

Query: 235 NNHILTTGGMDGLII--------NNDVRVRDHIVETYRGHNQEVCGLKWS--ASGQQLAS 284
              I+ +   D  +               R + + T       +  +K++    G +LA 
Sbjct: 70  YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC 129

Query: 285 GGNDNLLHIWD-------RSMASSNSVTQWLHRLEEHTSAVKAIAWCP--FQSNLLATGG 335
            GND +L ++D       RS   ++ +         H  +   ++WCP  F    LA   
Sbjct: 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV-- 187

Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395
              ++ I +              G                                    
Sbjct: 188 SALEQAIIYQR---------GKDGKLHV-------------------------------- 206

Query: 396 MAELSGHTSRVLFMAQSPD----GCTVASAAADETLRFWNV 432
            A+L GH S +  ++ +P        +A+   D  +R + +
Sbjct: 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 36/229 (15%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE-----------NGPVTSVNWAPD---GRHIA 199
           +A       + L+DA + +     T+  E                 ++W P       +A
Sbjct: 127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186

Query: 200 IGLNNCQVQLWDSTANRQ--LRTLRGGHRSRVGSLAW------NNHILTTGGMDGLIINN 251
           +      +        +      L G H+S + S++W         ++ TG  DG I   
Sbjct: 187 VSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245

Query: 252 DVRVRDHIVETYRGHNQEVC--GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH 309
            +  +   +                 SA     A G +D+           SN   + L 
Sbjct: 246 KITEK---LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE--LQSNLQVELLS 300

Query: 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358
             ++H   V +++W      +L++ G   D  ++ W          +  
Sbjct: 301 EHDDHNGEVWSVSWNL-TGTILSSAGD--DGKVRLWKATYSNEFKCMSV 346

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 41/178 (23%)

Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
           H+     GH+  V  + +   G+ +A+  +D  + ++   +    S  +       H S+
Sbjct: 2   HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFK--LDKDTSNWELSDSWRAHDSS 59

Query: 318 VKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376
           + AI W       ++A+     D+ +K W         S    +++              
Sbjct: 60  IVAIDWASPEYGRIIAS--ASYDKTVKLWEEDPDQEECSGRRWNKL-------------- 103

Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD--GCTVASAAADETLRFWNV 432
                                 L+     +  +  +P   G  +A    D  LR ++ 
Sbjct: 104 --------------------CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 150 GSSNVLAIALGSTVYLWDASDGTTSELV-TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
              +    +  +T    +       EL+   DD NG V SV+W   G  ++   ++ +V+
Sbjct: 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331

Query: 209 LWDSTANRQLRTLRG--GHR 226
           LW +T + + + +      +
Sbjct: 332 LWKATYSNEFKCMSVITAQQ 351

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           P M      SGH   V  +     G  VA+ ++D+ ++ + +
Sbjct: 1   PHMQPF--DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKL 40

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  133 bits (338), Expect = 1e-35
 Identities = 60/293 (20%), Positives = 114/293 (38%), Gaps = 28/293 (9%)

Query: 157 IALGS---TVYLWDASDGTTS---ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
           I   S   T+ +W  +   T+       +   +  V+ V  + DG+    G  +  ++LW
Sbjct: 54  ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113

Query: 211 DSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ 268
           D T     R   G H   V S+A+  +N  + +G  D  I   +             H++
Sbjct: 114 DLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172

Query: 269 EVCGLKWSASGQQ--LASGGNDNLLHIWDRSMASSNSVT-QWLHRLEEHTSAVKAIAWCP 325
            V  +++S +     + S G D L+ +W+ +         +       HT  +  +   P
Sbjct: 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-------NCKLKTNHIGHTGYLNTVTVSP 225

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT---- 381
              +L A+GG   D     W+ + G  L ++D G  + AL ++ N   L ++ G +    
Sbjct: 226 -DGSLCASGGK--DGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW 282

Query: 382 --QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             + ++ + +    V          +   +A S DG T+ +   D  +R W V
Sbjct: 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  117 bits (296), Expect = 8e-30
 Identities = 55/294 (18%), Positives = 95/294 (32%), Gaps = 74/294 (25%)

Query: 157 IALGS---TVYLWDASDGTTS--ELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLW 210
            + G    T  L+  S  T       T+   NG VT +   P     I     +  + +W
Sbjct: 7   HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66

Query: 211 DSTAN-----RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HI 259
             T +        R LR GH   V  +    +     +G  DG +     R+ D      
Sbjct: 67  KLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTL-----RLWDLTTGTT 120

Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319
              + GH ++V  + +S+  +Q+ SG  D  + +W+        V ++  + E H+  V 
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-----GVCKYTVQDESHSEWVS 175

Query: 320 AIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
            + + P   + ++ +   G D+ +K WN                                
Sbjct: 176 CVRFSPNSSNPIIVS--CGWDKLVKVWNLANCKLK------------------------- 208

Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                 GHT  +  +  SPDG   AS   D     W++
Sbjct: 209 ------------------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  100 bits (252), Expect = 1e-23
 Identities = 48/252 (19%), Positives = 79/252 (31%), Gaps = 63/252 (25%)

Query: 193 PDGRHIAIGLNNCQVQLWDSTANRQLRTLRG---GHRSRVGSLAW---NNHILTTGGMDG 246
               H + G++     L+  +   +  TLRG   GH   V  +A       ++ +   D 
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDK 61

Query: 247 LII----NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302
            II      D           RGH+  V  +  S+ GQ   SG  D  L +WD +     
Sbjct: 62  TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--- 118

Query: 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV 362
                  R   HT  V ++A+    +  + +  G  D+ IK WNT               
Sbjct: 119 ---TTTRRFVGHTKDVLSVAFSS-DNRQIVS--GSRDKTIKLWNTLGVC----------- 161

Query: 363 CALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT--VAS 420
                                              +   H+  V  +  SP+     + S
Sbjct: 162 -------------------------------KYTVQDESHSEWVSCVRFSPNSSNPIIVS 190

Query: 421 AAADETLRFWNV 432
              D+ ++ WN+
Sbjct: 191 CGWDKLVKVWNL 202

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 89.5 bits (223), Expect = 6e-20
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 18/205 (8%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI--GLNNCQVQLWD 211
           I  GS   T+ LW+   G     V  +  +  V+ V ++P+  +  I     +  V++W+
Sbjct: 143 IVSGSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201

Query: 212 STANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269
               +      G H   + ++    +  +  +GG DG  +  D+    H+  T  G +  
Sbjct: 202 LANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-YTLDGGD-I 258

Query: 270 VCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
           +  L +S +   L +      + IWD   + +             +       ++AW   
Sbjct: 259 INALCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA- 316

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGA 351
               L  G    D  ++ W    G 
Sbjct: 317 DGQTLFAGYT--DNLVRVWQVTIGT 339

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  138 bits (349), Expect = 2e-35
 Identities = 42/289 (14%), Positives = 85/289 (29%), Gaps = 64/289 (22%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG--LNNCQVQLWD 211
            A G     V +WD +  T     T+   +GPV  ++W  + + IA           ++ 
Sbjct: 74  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133

Query: 212 STANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRD----HIVETYR 264
                    L  G    + S+ +       + +G  D  +      + +        T+ 
Sbjct: 134 FDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTV-----AIFEGPPFKFKSTFG 187

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAW 323
            H + V  ++++  G   AS G D  + +++      +        +   H+ +V  + W
Sbjct: 188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383
            P     +A+     D+ IK WN  T     ++                           
Sbjct: 248 SP-DGTKIAS--ASADKTIKIWNVATLKVEKTI--------------------------- 277

Query: 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                            G       +        + S +A+  + F N 
Sbjct: 278 ---------------PVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 311

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  136 bits (345), Expect = 6e-35
 Identities = 37/282 (13%), Positives = 80/282 (28%), Gaps = 56/282 (19%)

Query: 154 VLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           +  ++    + +  A   G  S     +  +     +  + DG           + ++  
Sbjct: 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-HIAIYSH 439

Query: 213 TANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
              +        +      +A   +   +  GG D  +    +            H  E+
Sbjct: 440 --GKLTEVPISYN---SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 494

Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
             + +S +G  L +      +  +     ++N      +    HT+ V  ++W P  +  
Sbjct: 495 TSVAFSNNGAFLVATDQSRKVIPYS---VANNFELAHTNSWTFHTAKVACVSWSP-DNVR 550

Query: 331 LATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390
           LATG    D  +  WN         ++  S    ++                        
Sbjct: 551 LATGSL--DNSVIVWN---------MNKPSDHPIII------------------------ 575

Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                      H    +      +  T+ SA  D  ++FWNV
Sbjct: 576 --------KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  130 bits (329), Expect = 7e-33
 Identities = 54/294 (18%), Positives = 100/294 (34%), Gaps = 66/294 (22%)

Query: 151 SSNVLAIALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV 207
           + + +    G+   TV +   +D          + +   T    +P G + A G  +  V
Sbjct: 29  AGDKIQYCNGTSVYTVPVGSLTDTEIYT-----EHSHQTTVAKTSPSGYYCASGDVHGNV 83

Query: 208 QLWDSTANRQL--RTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HI 259
           ++WD+T    +   T+       V  ++W   +  +   G           V        
Sbjct: 84  RIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTS 139

Query: 260 VETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
                G  + +  + +  S   ++ SG +DN + I++          ++     EHT  V
Sbjct: 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKFV 193

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
            ++ + P   +L A+   GGD  I  +N   G      +  S                  
Sbjct: 194 HSVRYNP-DGSLFAS--TGGDGTIVLYNGVDGTKTGVFEDDSLK---------------- 234

Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                  H+  V  +  SPDG  +ASA+AD+T++ WNV
Sbjct: 235 --------------------NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  128 bits (324), Expect = 3e-32
 Identities = 30/282 (10%), Positives = 72/282 (25%), Gaps = 64/282 (22%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +   S    +   +   G+          N  +T+++ + DG+ +        +  WD +
Sbjct: 297 LVSISANGFINFVNPELGS--IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGL-IINNDVRVRDHIVETYRGHNQEV 270
                R     H + +  +       + T    D L ++       D         + + 
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 414

Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
            GL  SA G    +    + + I+           +       +      +A        
Sbjct: 415 LGLAVSADGDIAVAACYKH-IAIYSHG--------KLTEVPISYN--SSCVALSN-DKQF 462

Query: 331 LATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390
           +A   GG D  +  +     +                                       
Sbjct: 463 VAV--GGQDSKVHVYKLSGASVS------------------------------------- 483

Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                  +   H + +  +A S +G  + +      +  ++V
Sbjct: 484 -----EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  125 bits (315), Expect = 5e-31
 Identities = 39/287 (13%), Positives = 72/287 (25%), Gaps = 65/287 (22%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I  GS   TV +++          T  +    V SV + PDG   A    +  + L++  
Sbjct: 163 IISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220

Query: 214 ANRQLRTLRG------GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG 265
              +             H   V  L W  +   + +   D  I   +V           G
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
              E   L    + Q L S   +  ++  +  +               H  A+ A++   
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELG------SIDQVRYGHNKAITALSSSA 334

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
                L +     +  I  W+  TG                                   
Sbjct: 335 -DGKTLFSADA--EGHINSWDISTGISN-------------------------------- 359

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                           H + +  +  +  G      + D+ L+    
Sbjct: 360 ----------RVFPDVHATMITGIKTTSKGDLFTV-SWDDHLKVVPA 395

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  109 bits (274), Expect = 1e-25
 Identities = 36/230 (15%), Positives = 62/230 (26%), Gaps = 59/230 (25%)

Query: 209 LWDSTANRQLRTLRGGHRSRVGSLAW---NNHILT-TGGMDGLIINNDVRVRD-HIVETY 263
           + + +      +L    R     L      + I    G     +      V      E Y
Sbjct: 1   MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTV-----PVGSLTDTEIY 55

Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
             H+ +    K S SG   ASG     + IWD    ++ +       +   +  VK I+W
Sbjct: 56  TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD----TTQTTHILKTTIPVFSGPVKDISW 111

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383
              +S  +A  G G +R    +   TG                                 
Sbjct: 112 DS-ESKRIAAVGEGRERFGHVFLFDTGTSN------------------------------ 140

Query: 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG-CTVASAAADETLRFWNV 432
                          L+G    +  +   P     + S + D T+  +  
Sbjct: 141 -------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK 441
            + H+ +      SP G   AS      +R W+      ++  
Sbjct: 55  YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  132 bits (335), Expect = 2e-35
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 43/301 (14%)

Query: 157 IALGS---TVYLWDASDG---TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
           +   S   T+  W  +         + +    +  V       DG +      +  ++LW
Sbjct: 33  LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92

Query: 211 DSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD---HIVETYRG 265
           D       +    GH+S V S+       ++ +G  D       ++V       + T  G
Sbjct: 93  DVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRD-----KTIKVWTIKGQCLATLLG 146

Query: 266 HNQEVCGLKWS------ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319
           HN  V  ++             + S GND ++  W+    +   +         H S + 
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN---LNQFQI---EADFIGHNSNIN 200

Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG 379
            +   P    L+A+   G D  I  WN      + ++    +V +L ++ N   L ++  
Sbjct: 201 TLTASP-DGTLIAS--AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257

Query: 380 FTQNQLTLWKYPSMVKMAEL--------SGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
                + ++       + +L               + +A S DG T+ +   D  +R W 
Sbjct: 258 TG---IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314

Query: 432 V 432
           V
Sbjct: 315 V 315

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  111 bits (279), Expect = 2e-27
 Identities = 46/267 (17%), Positives = 79/267 (29%), Gaps = 75/267 (28%)

Query: 183 NGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTAN-----RQLRTLRGGHRSRVGSLAW-- 234
           NG VTS+  +      +     +  +  W  T +       +R+ + GH   V       
Sbjct: 17  NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTA 75

Query: 235 NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290
           +     +   D  +     R+ D       + + GH  +V  +        + SG  D  
Sbjct: 76  DGAYALSASWDKTL-----RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130

Query: 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN-----LLATGGGGGDRCIKFW 345
           + +W           Q L  L  H   V  +   P +        + +   G D+ +K W
Sbjct: 131 IKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGNDKMVKAW 181

Query: 346 NTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR 405
           N +                                                A+  GH S 
Sbjct: 182 NLNQFQIE-------------------------------------------ADFIGHNSN 198

Query: 406 VLFMAQSPDGCTVASAAADETLRFWNV 432
           +  +  SPDG  +ASA  D  +  WN+
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNL 225

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 29/210 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAP------DGRHIAIGLNNCQV 207
           I  GS   T+ +W         L T+   N  V+ V   P      D   I    N+  V
Sbjct: 122 IISGSRDKTIKVWTI---KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178

Query: 208 QLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG 265
           + W+    +      G H S + +L    +  ++ + G DG I+  ++  +  +  T   
Sbjct: 179 KAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-YTLSA 236

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-----LEEHTSAVKA 320
            + EV  L +S +   LA+      + ++         +   L        +       +
Sbjct: 237 QD-EVFSLAFSPNRYWLAAAT-ATGIKVFS---LDPQYLVDDLRPEFAGYSKAAEPHAVS 291

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350
           +AW       L  G    D  I+ W   T 
Sbjct: 292 LAWSA-DGQTLFAGYT--DNVIRVWQVMTA 318

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 48/180 (26%)

Query: 259 IVETYRGHNQEVCGLKWS-ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
           +  T  GHN  V  L  S      L S   D  L  W  +          +   + H+  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHI 67

Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
           V+             +     D+ ++ W+  TG                           
Sbjct: 68  VQDCTLTA-DGAYALSASW--DKTLRLWDVATGETY------------------------ 100

Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437
                                  GH S V+ +        + S + D+T++ W + G   
Sbjct: 101 -------------------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  132 bits (334), Expect = 3e-35
 Identities = 59/285 (20%), Positives = 97/285 (34%), Gaps = 63/285 (22%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +   S   T+ +WD S G    L T+   +  V   N+ P    I  G  +  V++WD  
Sbjct: 80  LVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137

Query: 214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
             + L+TL   H   V ++ +N    ++ +   DGL    D      +       N  V 
Sbjct: 138 TGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN-- 329
            +K+S +G+ + +   DN L +WD    S     + L     H +    I      +   
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWD---YSKG---KCLKTYTGHKNEKYCIFANFSVTGGK 250

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389
            + +G    D  +  WN  T   +                                    
Sbjct: 251 WIVSGSE--DNLVYIWNLQTKEIV------------------------------------ 272

Query: 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA--DETLRFWNV 432
                   +L GHT  V+  A  P    +ASAA   D+T++ W  
Sbjct: 273 -------QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  128 bits (324), Expect = 7e-34
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 63/256 (24%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
              V+SV ++P+G  +A    +  +++W +   +  +T+  GH+  +  +AW  ++++L 
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLV 81

Query: 241 TGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296
           +   D  +     ++ D      ++T +GH+  V    ++     + SG  D  + IWD 
Sbjct: 82  SASDDKTL-----KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD- 135

Query: 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
               +    + L  L  H+  V A+ +     +L+ +     D   + W+T +G CL   
Sbjct: 136 --VKTG---KCLKTLPAHSDPVSAVHFNR-DGSLIVS--SSYDGLCRIWDTASGQCLK-- 185

Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
                                        TL           +      V F+  SP+G 
Sbjct: 186 -----------------------------TL-----------IDDDNPPVSFVKFSPNGK 205

Query: 417 TVASAAADETLRFWNV 432
            + +A  D TL+ W+ 
Sbjct: 206 YILAATLDNTLKLWDY 221

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 52/180 (28%)

Query: 253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE 312
           V+    +  T  GH + V  +K+S +G+ LAS   D L+ IW    A      ++   + 
Sbjct: 9   VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG---AYDG---KFEKTIS 62

Query: 313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372
            H   +  +AW    SNLL +     D+ +K W+  +G CL +                 
Sbjct: 63  GHKLGISDVAWSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKT----------------- 102

Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                     L GH++ V     +P    + S + DE++R W+V
Sbjct: 103 --------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  137 bits (348), Expect = 4e-35
 Identities = 44/283 (15%), Positives = 89/283 (31%), Gaps = 60/283 (21%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +        V +W+       E+ ++     PV +  +      I +G ++ ++++++  
Sbjct: 28  VLTTLYSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
              ++      H   + S+A       + +G  D  +   +      + +T+ GH   V 
Sbjct: 86  TGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144

Query: 272 GLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSN 329
            + ++       ASG  D  + +W       ++    L         V  + + P     
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWS---LGQSTPNFTL--TTGQERGVNYVDYYPLPDKP 199

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389
            + T     D  IK W+  T +C+ +                                  
Sbjct: 200 YMIT--ASDDLTIKIWDYQTKSCVAT---------------------------------- 223

Query: 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                    L GH S V F    P    + S + D TL+ WN 
Sbjct: 224 ---------LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  117 bits (295), Expect = 2e-28
 Identities = 38/257 (14%), Positives = 85/257 (33%), Gaps = 63/257 (24%)

Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTT 241
             V  +++ P    +   L + +V++W+     ++R+++    + V +  +    + +  
Sbjct: 14  DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIV 72

Query: 242 GGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
           G  D  I     RV +      V  +  H   +  +    +   + SG +D  + +W+  
Sbjct: 73  GSDDFRI-----RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357
              +   T      E H   V  +A+ P   +  A+  G  DR +K W+        ++ 
Sbjct: 128 NNWALEQT-----FEGHEHFVMCVAFNPKDPSTFAS--GCLDRTVKVWSLGQSTPNFTL- 179

Query: 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA--QSPDG 415
                                                     +G    V ++     PD 
Sbjct: 180 -----------------------------------------TTGQERGVNYVDYYPLPDK 198

Query: 416 CTVASAAADETLRFWNV 432
             + +A+ D T++ W+ 
Sbjct: 199 PYMITASDDLTIKIWDY 215

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  102 bits (255), Expect = 3e-23
 Identities = 39/312 (12%), Positives = 94/312 (30%), Gaps = 49/312 (15%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +   S   T+ +WD      S + T++     V+   + P    I  G  +  +++W+S+
Sbjct: 201 MITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

Query: 214 ANRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269
             +  +TL      R   +A +     + + +G  +G  + +     D    +     + 
Sbjct: 259 TYKVEKTLN-VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL--GNDEPTLSLDPVGKL 315

Query: 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
           V    WS      AS     ++   +  +     ++     L       +++A  P    
Sbjct: 316 V----WSGGKNAAASDIFTAVIRGNE-EVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGR 369

Query: 330 LLATGGGGG---DRCIKFWNTHTGACLN-----------SVDTGSQVCALLWNKNERELL 375
            +   G G       + + N   G C +            +D   Q+      K      
Sbjct: 370 FVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWS 429

Query: 376 SSHGF--------------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA 421
                              +   +  + + +   +  +  +   V++   S +G  V   
Sbjct: 430 VPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIW---SDNGELVMIV 486

Query: 422 AADETLRFWNVF 433
             +      + +
Sbjct: 487 NTNSNGDEASGY 498

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 52/287 (18%), Positives = 87/287 (30%), Gaps = 68/287 (23%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDD-ENGPVTSVNW--APDGRHIAIGLNNCQVQLW 210
            A G    TV +W     T     T+   +   V  V++   PD  ++    ++  +++W
Sbjct: 156 FASGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

Query: 211 DSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
           D      + TL  GH S V                                         
Sbjct: 214 DYQTKSCVATLE-GHMSNVSFAV------------------------------------- 235

Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSN 329
               +  +   + SG  D  L IW+     S++       L         IA  P  + N
Sbjct: 236 ----FHPTLPIIISGSEDGTLKIWN-----SSTYKV-EKTLNVGLERSWCIATHPTGRKN 285

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ----NQL 385
            +A    G D      +        S+D    V  L+W+   +   +S  FT     N+ 
Sbjct: 286 YIA---SGFDNGFTVLSLGNDEPTLSLD---PVGKLVWSGG-KNAAASDIFTAVIRGNEE 338

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                P  ++  EL         +A SP+G  V      E + +  +
Sbjct: 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTAL 385

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 52/174 (29%)

Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
           I +T+   +  V G+ +  +   + +      + IW+            +  ++   + V
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ------VEVRSIQVTETPV 58

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
           +A  +   + N +    G  D  I+ +N +TG  +                         
Sbjct: 59  RAGKFIA-RKNWIIV--GSDDFRIRVFNYNTGEKV------------------------- 90

Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                              +   H   +  +A  P    V S + D T++ WN 
Sbjct: 91  ------------------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  132 bits (335), Expect = 1e-34
 Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 83/298 (27%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I  G     + LW+    T + L  ++    P+ SV W  DG HI          LW+  
Sbjct: 123 IVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179

Query: 214 ANRQLRTLRG--------------GHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRD- 257
           +   ++                  G  S    + W ++      G  G I      V   
Sbjct: 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI-----FVYQI 234

Query: 258 ---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
                     GH+  +  L+++ + + L S  +D  L IW     +        +    H
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH--GGNG----NSQNCFYGH 288

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374
           + ++ + +W     + + +     D  ++ W+      L                     
Sbjct: 289 SQSIVSASWVG--DDKVISCSM--DGSVRLWSLKQNTLL--------------------- 323

Query: 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                 A        +     S DG   A A  D  +  +++
Sbjct: 324 ----------------------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  126 bits (319), Expect = 2e-32
 Identities = 46/288 (15%), Positives = 95/288 (32%), Gaps = 53/288 (18%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRT 220
           ++   D  DG    L  +      + S  W P D   +A G  N   +L           
Sbjct: 25  SIDSSDDLDGFVKILKEIVKL-DNIVSSTWNPLDESILAYGEKNSVARLARIVET----- 78

Query: 221 LRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ 280
                  + G   W            L I  ++R    +  +      +V  L WS  G 
Sbjct: 79  ------DQEGKKYWK-----------LTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121

Query: 281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR 340
            + +G  +  L +W+++          L+ L  H + + ++ W       + +     + 
Sbjct: 122 SIVTGVENGELRLWNKT-------GALLNVLNFHRAPIVSVKWNK-DGTHIISMDV--EN 171

Query: 341 CIKFWNTHTGACL----------NSVDT------GSQVCALLWNKNERELLSSHGFTQNQ 384
               WN  +G  +          +S++       GS    + W  +++ ++         
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA--- 228

Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           + +++        +L GH   +  +  +     + SA+ D TLR W+ 
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  122 bits (309), Expect = 5e-31
 Identities = 42/313 (13%), Positives = 87/313 (27%), Gaps = 93/313 (29%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE------------------NGPVTSVNWAPDG 195
           +A G       L    +                                 VT + W+ DG
Sbjct: 61  LAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120

Query: 196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLII---- 249
             I  G+ N +++LW+ T    L  L   HR+ + S+ WN     + +  ++ + I    
Sbjct: 121 NSIVTGVENGELRLWNKT-GALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178

Query: 250 ----------NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299
                       +        E + G       ++W     +    G    + ++     
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQ---I 234

Query: 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359
           +  +      +L  H   +  + +    + LL +     D  ++ W+   G   N     
Sbjct: 235 TEKTP---TGKLIGHHGPISVLEFND-TNKLLLS--ASDDGTLRIWHGGNGNSQNC---- 284

Query: 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419
                                                    GH+  ++  +   D   V 
Sbjct: 285 ---------------------------------------FYGHSQSIVSASWVGDD-KVI 304

Query: 420 SAAADETLRFWNV 432
           S + D ++R W++
Sbjct: 305 SCSMDGSVRLWSL 317

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  112 bits (282), Expect = 3e-27
 Identities = 39/300 (13%), Positives = 69/300 (23%), Gaps = 83/300 (27%)

Query: 157 IALGS---TVYLWDASDGT-------------TSELVTVDDENGPVTSVNWAPDGRHIAI 200
           I          LW+   GT             +        +      V W  D + +  
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223

Query: 201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV--- 255
           G     + ++  T       L G H   +  L +   N +L +   DG +     R+   
Sbjct: 224 GPKGA-IFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTL-----RIWHG 276

Query: 256 -RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
              +    + GH+Q +    W    + + S   D  + +W       N     L      
Sbjct: 277 GNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWS---LKQN---TLLALSIVD 329

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374
              + A           A      D  +  ++       +                    
Sbjct: 330 GVPIFAGRISQ-DGQKYAVAFM--DGQVNVYDLKKLNSKSRS------------------ 368

Query: 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLR-FWNV 432
                                   L G+   +L     P      +S   D      WN 
Sbjct: 369 ------------------------LYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  108 bits (272), Expect = 6e-26
 Identities = 23/213 (10%), Positives = 70/213 (32%), Gaps = 23/213 (10%)

Query: 151 SSNVLAIALGS--TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
             +   +  G    ++++  ++ T      +   +GP++ + +    + +    ++  ++
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272

Query: 209 LWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVET 262
           +W            G H   + S +W  ++ +++   MDG +     R+       ++  
Sbjct: 273 IWHGGNGNSQNCFYG-HSQSIVSASWVGDDKVIS-CSMDGSV-----RLWSLKQNTLLAL 325

Query: 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
                  +   + S  GQ+ A    D  ++++D        +      L  +   +    
Sbjct: 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD-----LKKLNSKSRSLYGNRDGILNPL 380

Query: 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355
             P  ++  ++           WN        +
Sbjct: 381 PIPLYASYQSSQDNDY-IFDLSWNCAGNKISVA 412

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 30/162 (18%)

Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
           +++ ++     + N +   D            + +       + +  W P   ++LA G 
Sbjct: 11  ASTVERETQEDDTNSIDSSD-----DLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGE 65

Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395
              +   +            +    Q     W       L                    
Sbjct: 66  K--NSVARLAR---------IVETDQEGKKYWKLTIIAELRH--------------PFAL 100

Query: 396 MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ 437
            A     T++V  +A S DG ++ +   +  LR WN  GA  
Sbjct: 101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL 142

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 14/130 (10%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD-S 212
           +   S   +V LW     T   L     +  P+ +   + DG+  A+   + QV ++D  
Sbjct: 303 VISCSMDGSVRLWSLKQNT--LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360

Query: 213 TANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269
             N + R+L  G+R  + +           ++   D +   +     + I   Y      
Sbjct: 361 KLNSKSRSLY-GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419

Query: 270 VCGLKWSASG 279
           V     +  G
Sbjct: 420 V----VAIPG 425

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score =  132 bits (333), Expect = 3e-34
 Identities = 60/315 (19%), Positives = 117/315 (37%), Gaps = 53/315 (16%)

Query: 161 STVYLWDASDGTTS--ELVTVDDENGPVTSVNWAPDGRH-IAIGLNNCQVQLWD------ 211
           +    +          E+    +  G V    + P     IA    +  V ++D      
Sbjct: 104 NEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPS 163

Query: 212 ----STANRQLRTLRGGHRSRVGSLAWNNH---ILTTGGMDGLI----INNDVRVRDHI- 259
               S   +    LRG H+     L+WN +    L +   D  I    IN   +    I 
Sbjct: 164 KPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID 222

Query: 260 -VETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
               + GH   V  + W    + L  S  +D  L IWD     +N+ ++  H ++ HT+ 
Sbjct: 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD---TRNNNTSKPSHTVDAHTAE 279

Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQVCALLWNKNERE 373
           V  +++ P+   +LAT  G  D+ +  W+         + +      ++  + W+ +   
Sbjct: 280 VNCLSFNPYSEFILAT--GSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNET 335

Query: 374 LLSSHGFTQNQLTLW---------------KYPSMVKMAELSGHTSRVLFMAQSPDG-CT 417
           +L+S G T  +L +W                 P  + +    GHT+++   + +P+    
Sbjct: 336 ILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPEL-LFIHGGHTAKISDFSWNPNEPWI 393

Query: 418 VASAAADETLRFWNV 432
           + S + D  ++ W +
Sbjct: 394 ICSVSEDNIMQVWQM 408

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  130 bits (329), Expect = 5e-34
 Identities = 8/276 (2%), Positives = 39/276 (14%), Gaps = 55/276 (19%)

Query: 165 LWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGG 224
               +     + + +                             ++     +    L+  
Sbjct: 7   AAARALSQREQDIQMMLAADVHLGTKNCDFQMERY-VYKRRTDGIYIINLGKTWEKLQ-L 64

Query: 225 HRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSAS 278
               + ++    +  + +              ++             H       +   S
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRA-----VLKFAQYTGAHAIAGRHTPGTFTNQLQTS 119

Query: 279 GQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337
             +       +          ++  ++        +       I          +   G 
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSI--GC 177

Query: 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
               +          +                                   K+       
Sbjct: 178 LFWLLARMVLQMRGTIL-------------------------------PGHKWD------ 200

Query: 398 ELSGHTSRVLFMA-QSPDGCTVASAAADETLRFWNV 432
            +                    A+  A +       
Sbjct: 201 -VMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEY 235

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  101 bits (255), Expect = 5e-24
 Identities = 0/218 (0%), Positives = 0/218 (0%), Gaps = 32/218 (14%)

Query: 157 IALGS---TVYLWDASDG---TTSELVTVDDENGPVTSVNWA-PDGRHIAIGLNNCQVQL 209
            ++G     +                  V  +         A       A  +      +
Sbjct: 173 QSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAV 232

Query: 210 WDSTANRQ-LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVET 262
            +  A                   A                                   
Sbjct: 233 AEYAAPAADTWGGEW-GTDAAAQPAAIPAQAGADWTAAPAPA-----AGGWDTAAAPAPG 286

Query: 263 YRGHNQEVCGLK-------WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315
           +   +  V                                                    
Sbjct: 287 WEQGSAPVPAAAPTPNWGE--                                        344

Query: 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
                                                 
Sbjct: 345 ---                                    379

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  129 bits (326), Expect = 9e-34
 Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 72/292 (24%)

Query: 161 STVYLWDASDGTTSELVTVDDE------------NGPVTSVNWAPDGRHIAIGLNNCQVQ 208
               L D      +E V    +               V  ++W  D R I     + +V 
Sbjct: 30  ERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVI 89

Query: 209 LWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLI-----INNDVRVRDHIVE 261
           +WDS    +   +     + V + A+  +   +  GG+D          +         +
Sbjct: 90  VWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKK 148

Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321
           +   H   +    ++ S  Q+ +   D    +WD          Q L     H + V  +
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSFHGHGADVLCL 202

Query: 322 AWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
              P    N   +GG   D+    W+  +G C+ +                         
Sbjct: 203 DLAPSETGNTFVSGGC--DKKAMVWDMRSGQCVQA------------------------- 235

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                H S V  +   P G   AS + D T R +++
Sbjct: 236 ------------------FETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  124 bits (315), Expect = 3e-32
 Identities = 49/285 (17%), Positives = 90/285 (31%), Gaps = 63/285 (22%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE----NGPVTSVNWAPDGRHIAIGLNNCQVQL 209
           IA G       ++  +      +             +++ ++      I     +    L
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180

Query: 210 WDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIVETYRG 265
           WD  + + L++  G H + V  L        +   +GG D   +  D+R    + + +  
Sbjct: 181 WDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV-QAFET 238

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
           H  +V  +++  SG   ASG +D    ++D     ++         E       ++ +  
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYD---LRADREVAIY-SKESIIFGASSVDFSL 294

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
               LL  G    D  I  W+   G+ +                                
Sbjct: 295 -SGRLLFAGYN--DYTINVWDVLKGSRV-------------------------------- 319

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
                      + L GH +RV  +  SPDG    S + D TLR W
Sbjct: 320 -----------SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  117 bits (296), Expect = 1e-29
 Identities = 49/293 (16%), Positives = 98/293 (33%), Gaps = 75/293 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I   S    V +WD+   TT++   V      V +  +AP G  IA G  + +  ++  T
Sbjct: 79  IVSSSQDGKVIVWDSF--TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136

Query: 214 AN------RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVE 261
            +       + +++   H + + + ++  ++  + T   DG        + D     +++
Sbjct: 137 FDKNENMAAKKKSVAM-HTNYLSACSFTNSDMQILTASGDGTC-----ALWDVESGQLLQ 190

Query: 262 TYRGHNQEVCGLKWS--ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319
           ++ GH  +V  L  +   +G    SGG D    +WD     S    Q +   E H S V 
Sbjct: 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD---MRSG---QCVQAFETHESDVN 244

Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG 379
           ++ + P   +  A+G    D   + ++      +                    + S   
Sbjct: 245 SVRYYP-SGDAFASGSD--DATCRLYDLRADREVA-------------------IYSKES 282

Query: 380 FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                        +  S  G  + +   D T+  W+V
Sbjct: 283 ----------------------IIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 92.6 bits (231), Expect = 6e-21
 Identities = 31/250 (12%), Positives = 70/250 (28%), Gaps = 74/250 (29%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTG 242
           +   T  +   +   +   L   + +L D   ++    +    +  + +           
Sbjct: 8   HENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRR--------- 58

Query: 243 GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302
                              T +GH  +V  + W    +++ S   D  + +WD   + + 
Sbjct: 59  -------------------TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD---SFT- 95

Query: 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV 362
             T   H +    + V A A+ P     +A GG   D     +        N     ++ 
Sbjct: 96  --TNKEHAVTMPCTWVMACAYAP-SGCAIACGGL--DNKCSVYPLTFDKNEN---MAAKK 147

Query: 363 CALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA 422
                                               ++ HT+ +   + +     + +A+
Sbjct: 148 ----------------------------------KSVAMHTNYLSACSFTNSDMQILTAS 173

Query: 423 ADETLRFWNV 432
            D T   W+V
Sbjct: 174 GDGTCALWDV 183

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 21/180 (11%), Positives = 44/180 (24%), Gaps = 54/180 (30%)

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD--------RSMASSNSVTQWLHRLE 312
               G ++        +  + L     +    + D        R  A    V +    L+
Sbjct: 2   MATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 61

Query: 313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372
            H + V  + WC      + +     D  +  W++ T                       
Sbjct: 62  GHGNKVLCMDWCK-DKRRIVS--SSQDGKVIVWDSFTTNKE------------------- 99

Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                     ++   + V+  A +P GC +A    D     + +
Sbjct: 100 ------------------------HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 45/142 (31%)

Query: 156 AIALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           A A GS   T  L+D        + + +      +SV+++  GR +  G N+  + +WD 
Sbjct: 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313

Query: 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG 272
               ++  L  GH +RV +L                                        
Sbjct: 314 LKGSRVSILF-GHENRVSTLR--------------------------------------- 333

Query: 273 LKWSASGQQLASGGNDNLLHIW 294
              S  G    SG  D+ L +W
Sbjct: 334 --VSPDGTAFCSGSWDHTLRVW 353

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  130 bits (329), Expect = 1e-33
 Identities = 39/253 (15%), Positives = 67/253 (26%), Gaps = 41/253 (16%)

Query: 186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG 243
                +   G H+     +    L+++      + L                      G 
Sbjct: 59  GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML--KRADYTAVDTAKLQMRRFILGT 116

Query: 244 MDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA 299
            +G I     +V D       E  + H  E+  LK+  SG+ L S   D  L IW     
Sbjct: 117 TEGDI-----KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS---V 168

Query: 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359
              S       L  H + V  IA    +   + +     D  I+ W   TG  +++    
Sbjct: 169 KDGSN---PRTLIGHRATVTDIAIID-RGRNVLSASL--DGTIRLWECGTGTTIHT---- 218

Query: 360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA 419
                           +      + +                 TS+   +     G  V 
Sbjct: 219 ---------------FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI 263

Query: 420 SAAADETLRFWNV 432
           +      +   NV
Sbjct: 264 AGHVSGVITVHNV 276

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  127 bits (322), Expect = 9e-33
 Identities = 34/304 (11%), Positives = 71/304 (23%), Gaps = 82/304 (26%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +         +L++       +   +                R   +G     +++ DS 
Sbjct: 71  LYKARLDGHDFLFNTIIR---DGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHN 267
            N Q    +  H S +  L +  +   L +   D       +++          T  GH 
Sbjct: 128 FNLQREIDQA-HVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGSNPRTLIGHR 181

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327
             V  +     G+ + S   D  + +W+     + +     +R E     V +IA     
Sbjct: 182 ATVTDIAIIDRGRNVLSASLDGTIRLWE---CGTGTTIHTFNRKENPHDGVNSIALFVGT 238

Query: 328 SNLLATGG------------------GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
              L                      G     I   N  +                    
Sbjct: 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---------------- 282

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS-PDGCTVASAAADETLR 428
                          + L            S  T     +     +   + +   +  L 
Sbjct: 283 ---------------IQL-----------PSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316

Query: 429 FWNV 432
            W++
Sbjct: 317 QWDL 320

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  116 bits (293), Expect = 7e-29
 Identities = 29/281 (10%), Positives = 74/281 (26%), Gaps = 76/281 (27%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +   S    + +W   DG  S   T+      VT +     GR++     +  ++LW+  
Sbjct: 154 LISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211

Query: 214 ANRQLRTLRG--GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
               + T          V S+A                           + +     +  
Sbjct: 212 TGTTIHTFNRKENPHDGVNSIALFV--------------------GTDRQLHEISTSKKN 251

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
            L++   G+ + +G    ++ + +       S  Q +    + T +  ++      +N +
Sbjct: 252 NLEFGTYGKYVIAGHVSGVITVHN-----VFSKEQTIQLPSKFTCSCNSLTVDGNNANYI 306

Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
             G    +  +  W+  +  C                                       
Sbjct: 307 YAGYE--NGMLAQWDLRSPECP-------------------------------------- 326

Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                  L    + +  +  +       S+  D +++   +
Sbjct: 327 ---VGEFLINEGTPINNVYFAAGA-LFVSSGFDTSIKLDII 363

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 33/223 (14%)

Query: 157 IALGS---TVYLWDASDGTT----------------------SELVTVDDENGPVTSVNW 191
           +   S   T+ LW+   GTT                      ++    +       ++ +
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255

Query: 192 APDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNH---ILTTGGMDGLI 248
              G+++  G  +  + + +  +  Q   L         SL  + +    +  G  +G++
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315

Query: 249 INNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSV 304
              D+R  +  V E        +  + ++ +G    S G D  + +              
Sbjct: 316 AQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAIE 374

Query: 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347
            +    L  +  AV    +     +       G +     +N 
Sbjct: 375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 20/171 (11%), Positives = 50/171 (29%), Gaps = 8/171 (4%)

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT---SAVKAI 321
              + +         + +    ++N    +     + N + +    +  ++    A K  
Sbjct: 3   HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGN 62

Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
            +     + L       D     +NT        +               R  +   G T
Sbjct: 63  TFEK-VGSHLYKARL--DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFIL--GTT 117

Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           +  + +      ++      H S +  +   P G  + S++ D  L+ W+V
Sbjct: 118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  128 bits (325), Expect = 1e-33
 Identities = 41/321 (12%), Positives = 87/321 (27%), Gaps = 75/321 (23%)

Query: 150 GSSNVLAIALGSTVYLWDASDGT---TSELVTVDDENGPVTSVNWAPDGRH----IAIGL 202
           G   V A    + V L++          +     D +    +  W  D       +A+  
Sbjct: 33  GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92

Query: 203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLI----INNDVRV 255
           +   +++ +    + ++   G H + +  L +   + ++L +   D  +    I  D  V
Sbjct: 93  SRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151

Query: 256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-------------------- 295
              I     GH  EV    +   G+++ S G D+ L +W                     
Sbjct: 152 A--IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209

Query: 296 RSMAS-SNSVTQW-LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
            +    S  +        + H + V  + W     +L+ +     +  I  W        
Sbjct: 210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLILS--KSCENAIVCWK------- 257

Query: 354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP 413
                       +        +                              + +M  S 
Sbjct: 258 --PGKMEDDIDKIKPSESNVTILGR--------------------FDYSQCDIWYMRFSM 295

Query: 414 D--GCTVASAAADETLRFWNV 432
           D     +A       L  W++
Sbjct: 296 DFWQKMLALGNQVGKLYVWDL 316

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  117 bits (296), Expect = 1e-29
 Identities = 39/293 (13%), Positives = 79/293 (26%), Gaps = 76/293 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLNNCQVQLW 210
           +   S    + LW+    T   +       G    V S ++   G  I     +  ++LW
Sbjct: 131 LLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188

Query: 211 DSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
              + R +  ++        S  +N +      +        +   D    T   H   V
Sbjct: 189 RINSKRMMNAIKE-------SYDYNPNKTNRPFIS-----QKIHFPD--FSTRDIHRNYV 234

Query: 271 CGLKWSASGQQLASGGNDNLLHIWD--------RSMASSNSVTQWLHRLEEHTSAVKAIA 322
             ++W   G  + S   +N +  W           +  S S    L R +     +  + 
Sbjct: 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292

Query: 323 WCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
           +   F   +LA G       +  W+        +                          
Sbjct: 293 FSMDFWQKMLALGNQ--VGKLYVWDLEVEDPHKA-------------------------- 324

Query: 382 QNQLTLWKYPSMVKMAELSGHT--SRVLFMAQSPDGCTVASAAADETLRFWNV 432
                        K   L+ H   + +   + S D   + +   D ++  W+ 
Sbjct: 325 -------------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score =  112 bits (283), Expect = 9e-28
 Identities = 42/284 (14%), Positives = 94/284 (33%), Gaps = 53/284 (18%)

Query: 183 NGPVTSVNWAPDGRH----IAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSLAW 234
           N P+  V +    +     +   + + +V L++  +  ++R L+            + AW
Sbjct: 18  NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 77

Query: 235 ------NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSAS-GQQLA 283
                 ++ +L   G  G+I     R+ +      ++ Y GH   +  LK+       L 
Sbjct: 78  TYDSNTSHPLLAVAGSRGII-----RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL 132

Query: 284 SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK 343
           S   D+ L +W+     ++++      +E H   V +  +       + + G   D  +K
Sbjct: 133 SVSKDHALRLWN---IQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGM--DHSLK 186

Query: 344 FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--- 400
            W  ++   +                    +  S+ +  N+         +   + S   
Sbjct: 187 LWRINSKRMM------------------NAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228

Query: 401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP 444
            H + V  +    D   + S + +  +  W        I K  P
Sbjct: 229 IHRNYVDCVRWLGD--LILSKSCENAIVCWKPGKMEDDIDKIKP 270

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 96.6 bits (241), Expect = 4e-22
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 72/236 (30%)

Query: 216 RQLRTLRGGHRSRVGSLAWN------NHILTTGGMDGLIINNDVRVRD----HIVETYRG 265
           + + +L+  H   +  + +N      + ++           N V + +      +   + 
Sbjct: 8   KCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGS-----NRVTLYECHSQGEIRLLQS 62

Query: 266 HN-----QEVCGLKWS----ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316
           +      +      W+     S   LA  G+  ++ I +          Q +     H +
Sbjct: 63  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------QCIKHYVGHGN 116

Query: 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376
           A+  + + P   NLL +     D  ++ WN  T   +                       
Sbjct: 117 AINELKFHPRDPNLLLS--VSKDHALRLWNIQTDTLVAI--------------------- 153

Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                 + GH   VL       G  + S   D +L+ W +
Sbjct: 154 -------------------FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 25/170 (14%), Positives = 44/170 (25%), Gaps = 35/170 (20%)

Query: 151 SSNVLAIALGS-TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL 209
           + N       S  ++  D S        T D     V  V W   G  I        +  
Sbjct: 206 NPNKTNRPFISQKIHFPDFS--------TRDIHRNYVDCVRW--LGDLILSKSCENAIVC 255

Query: 210 WDSTANRQ----------LRTLRG---GHRSRVGSLAW----NNHILTTGGMDGLI---- 248
           W                   T+ G     +  +  + +       +L  G   G +    
Sbjct: 256 WKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315

Query: 249 INNDVRVRDHIVETYRGHNQE--VCGLKWSASGQQLASGGNDNLLHIWDR 296
           +  +   +     T   H     +    +S     L +  +D  +  WDR
Sbjct: 316 LEVEDPHKAKC-TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  128 bits (323), Expect = 3e-33
 Identities = 35/255 (13%), Positives = 65/255 (25%), Gaps = 38/255 (14%)

Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWD--STANRQLRTLRGGHRSRVGSLAW--NNHIL 239
            P     +              QV+L++      +  RT    H   V  + W   ++ +
Sbjct: 12  KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRI 70

Query: 240 TTGGMDGLII--NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
            T   D                       N+    ++WS +  + A G    ++ +    
Sbjct: 71  VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY-- 128

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD 357
               N      H      S + ++ W P  + LLA   G  DR     + +        +
Sbjct: 129 FEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAA--GCADRKAYVLSAYVRDVDAKPE 185

Query: 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
                            +       N +                    V  +  SP G  
Sbjct: 186 AS---------------VWGSRLPFNTVCA-----------EYPSGGWVHAVGFSPSGNA 219

Query: 418 VASAAADETLRFWNV 432
           +A A  D ++     
Sbjct: 220 LAYAGHDSSVTIAYP 234

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  124 bits (314), Expect = 5e-32
 Identities = 54/314 (17%), Positives = 99/314 (31%), Gaps = 44/314 (14%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           I   S     Y+++     T +   V    N   T V W+P+    A+G     + +   
Sbjct: 70  IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129

Query: 213 TANRQ---LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLI----------------INN 251
                    + L+   RS + SL W  NN +L  G  D                      
Sbjct: 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW 189

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
             R+  + V         V  + +S SG  LA  G+D+ + I   S  +     + L  +
Sbjct: 190 GSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS--APEQPPRALITV 247

Query: 312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVCALLWNK 369
           +     ++++ W   +S ++A    G +        +    A    +D G+   +     
Sbjct: 248 KLSQLPLRSLLWAN-ESAIVA---AGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTG 303

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAE-------LSGHTSR---VLFMAQSPDGCT-V 418
           N  E     G          + +M             + H +    +   A +P   T  
Sbjct: 304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF 363

Query: 419 ASAAADETLRFWNV 432
            S+  D  +  W +
Sbjct: 364 TSSGTDGRVVLWTL 377

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score =  118 bits (297), Expect = 1e-29
 Identities = 47/316 (14%), Positives = 88/316 (27%), Gaps = 39/316 (12%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
               +    V L++          T  D +  VT V+WAP    I     +    +++  
Sbjct: 26  FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85

Query: 214 AN---RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH---IVETYRG 265
            +   +Q   L          + W  N      G    +I        +         R 
Sbjct: 86  PDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSVTQW--------LHRLEEH 314
               +  L W  +   LA+G  D   ++     R + +    + W        +      
Sbjct: 145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS 204

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----CLNSVDTGSQ-VCALLWNK 369
              V A+ + P   N LA    G D  +              L +V      + +LLW  
Sbjct: 205 GGWVHAVGFSP-SGNALAY--AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261

Query: 370 NERELLSSHGFTQNQLTLWKYPS--MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETL 427
               + + +        L +          +L   TS+  F   +  G T      +  +
Sbjct: 262 ESAIVAAGY---NYSPILLQGNESGWAHTRDLDAGTSKTSF---THTGNTGEGREEEGPV 315

Query: 428 RFWNVFGAPQVISKSA 443
            F  +    + +    
Sbjct: 316 SFTALRSTFRNMDLKG 331

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 18/172 (10%), Positives = 41/172 (23%), Gaps = 47/172 (27%)

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
           +      +      +++   +  +    N + ++++      +  +      +H   V  
Sbjct: 5   QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQ----DGNGWKHARTFSDHDKIVTC 60

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           + W P +SN + T     DR    +            T  Q   LL              
Sbjct: 61  VDWAP-KSNRIVT--CSQDRNAYVYEKRPDG------TWKQTLVLL-------------- 97

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                      F+  SP+    A  +    +     
Sbjct: 98  --------------------RLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  125 bits (317), Expect = 7e-33
 Identities = 55/309 (17%), Positives = 97/309 (31%), Gaps = 78/309 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWD 211
           +A  S   +V ++D  +G    +  +    GPV  V WA    G  +A    + +V +W 
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87

Query: 212 STANR--QLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLI--INNDVRVRDHIVETY 263
                  +      GH S V S+ W  H    IL  G  DG I  +      +  + +  
Sbjct: 88  EENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN 146

Query: 264 RGHNQEVCGLKWS-----------------ASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306
             H      + W+                    ++ ASGG DNL+ +W       +   +
Sbjct: 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK---EEEDGQWK 203

Query: 307 WLHRLEEHTSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVC 363
              +LE H+  V+ +AW P     ++ +A+     D  +  W     +      + +   
Sbjct: 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWTCDDAS------SNTWSP 255

Query: 364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA 423
            L                                 L      V  ++ S     +A +  
Sbjct: 256 KL---------------------------------LHKFNDVVWHVSWSITANILAVSGG 282

Query: 424 DETLRFWNV 432
           D  +  W  
Sbjct: 283 DNKVTLWKE 291

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score =  111 bits (279), Expect = 1e-27
 Identities = 52/302 (17%), Positives = 83/302 (27%), Gaps = 76/302 (25%)

Query: 173 TSELVTVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLRGGHRSRV 229
            S + TVD      +        G  +A   ++  V+++D     Q  +  LR GH   V
Sbjct: 2   VSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPV 60

Query: 230 GSLAW----NNHILTTGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWS--ASGQQL 282
             +AW      +IL +   D  +I              + GH+  V  + W+    G  L
Sbjct: 61  WQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLIL 120

Query: 283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP----------------F 326
           A G +D  + +      +     +       HT    A++W P                 
Sbjct: 121 ACGSSDGAISLLT---YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
                A+  GG D  IK W                                         
Sbjct: 178 YIKRFAS--GGCDNLIKLWKEEEDGQWKEEQK---------------------------- 207

Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPD----GCTVASAAADETLRFWNVFGAPQVISKS 442
                       L  H+  V  +A +P       T+AS + D  +  W    A       
Sbjct: 208 ------------LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP 255

Query: 443 AP 444
             
Sbjct: 256 KL 257

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 40/204 (19%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDG----------------- 195
           +A GS    + L   +     E+  +++       +V+WAP                   
Sbjct: 120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI 179

Query: 196 RHIAIGLNNCQVQLWDSTANRQ---LRTLRGGHRSRVGSLAW------NNHILTTGGMDG 246
           +  A G  +  ++LW    + Q    + L   H   V  +AW          + +   DG
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQDG 238

Query: 247 LII---NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
            +     +D        +     N  V  + WS +   LA  G DN + +W       + 
Sbjct: 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK-----ESV 293

Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQ 327
             QW+  + +      +++    +
Sbjct: 294 DGQWVC-ISDVNKGQGSVSASVTE 316

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  127 bits (320), Expect = 2e-32
 Identities = 45/288 (15%), Positives = 76/288 (26%), Gaps = 69/288 (23%)

Query: 157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH-IAIGLNNCQVQLWD--ST 213
                  +L          L      +   TS+ W P     +A+G     + LW+    
Sbjct: 95  QQGLQQSFLHTLDSYR--ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK 152

Query: 214 ANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRD------HIVETYR 264
                    G     +  L +   N +      M+G       R++D       +  +  
Sbjct: 153 DKPTFIKGIG-AGGSITGLKFNPLNTNQFYASSMEGTT-----RLQDFKGNILRVFASSD 206

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
             N   C L  SAS + + +G N   + + +          + L  L  H   V  +A  
Sbjct: 207 TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-------GKELWNLRMHKKKVTHVALN 259

Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
           P     LAT     D+ +K W+        S                             
Sbjct: 260 PCCDWFLATASV--DQTVKIWDLRQVRGKASFLY-------------------------- 291

Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                            H   V     SPDG  + +      +R ++ 
Sbjct: 292 --------------SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  118 bits (297), Expect = 3e-29
 Identities = 51/304 (16%), Positives = 87/304 (28%), Gaps = 83/304 (27%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
               S   T  L D          + D  N    S++ +   R +  G N   V L +  
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239

Query: 214 ANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVE--TYRGHNQ 268
             ++L  LR  H+ +V  +A N   +  L T  +D  +   D+R             H  
Sbjct: 240 -GKELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH 297

Query: 269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS------AVKAIA 322
            V    +S  G +L +    + + ++    AS          L  H             A
Sbjct: 298 PVNAACFSPDGARLLTTDQKSEIRVYS---ASQW---DCPLGLIPHPHRHFQHLTPIKAA 351

Query: 323 WCPFQSNLLATG----------GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372
           W P + NL+  G               R I  ++ ++G  +  +                
Sbjct: 352 WHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL---------------- 394

Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL----FMAQSPDGCTVASAAADETLR 428
                                         +S +     F   +P G T+AS A    + 
Sbjct: 395 --------------------------YDPESSGISSLNEF---NPMGDTLAS-AMGYHIL 424

Query: 429 FWNV 432
            W+ 
Sbjct: 425 IWSQ 428

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  117 bits (296), Expect = 4e-29
 Identities = 39/289 (13%), Positives = 79/289 (27%), Gaps = 51/289 (17%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDS 212
           +A+GS    + LW+         +      G +T + + P +             +L D 
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194

Query: 213 TANRQLRTLRGGH--RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD---HIVETYRG 265
                LR             SL    ++ ++ TG   G +      + +     +   R 
Sbjct: 195 K-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV-----ILLNMDGKELWNLRM 248

Query: 266 HNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
           H ++V  +  +      LA+   D  + IWD                  H   V A  + 
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWD---LRQVRGKASFLYSLPHRHPVNAACFS 305

Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
           P     L T        I+ ++     C                      L  H      
Sbjct: 306 P-DGARLLTTDQ--KSEIRVYSASQWDCPLG-------------------LIPH------ 337

Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNV 432
                +  +  +         ++ + + PD    +    +  T+  ++ 
Sbjct: 338 -PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG 385

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 23/236 (9%), Positives = 54/236 (22%), Gaps = 58/236 (24%)

Query: 207 VQLWDSTANRQLR-----TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVE 261
             LW   A  Q+       +R  H+ ++G  +W +              + +     I++
Sbjct: 59  DCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSVQQGLQQ----SFLHTLDSYR-ILQ 113

Query: 262 TYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
                ++    L W  +    +A G     + +W+              +      ++  
Sbjct: 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN---FGIKDKPT-FIKGIGAGGSITG 169

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           + + P  +N         +   +  +                         R   SS   
Sbjct: 170 LKFNPLNTNQFYASSM--EGTTRLQDFKGNIL-------------------RVFASSDT- 207

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP 436
                                       +  S     V +      +   N+ G  
Sbjct: 208 ---------------------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 23/203 (11%), Positives = 58/203 (28%), Gaps = 40/203 (19%)

Query: 157 IALGS---TVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           +A  S   TV +WD       +  +       PV +  ++PDG  +       +++++ +
Sbjct: 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA 325

Query: 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG 272
           +       L   H  R                               ++        +  
Sbjct: 326 SQWDCPLGLIP-HPHRHFQHLT------------------------PIKAAWHPRYNLIV 360

Query: 273 LKWSASGQQLASGGND-NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI-AWCPFQSNL 330
           +         +    +   + ++D    +S  +   L   +  +S + ++  + P   + 
Sbjct: 361 VGRYPDPNFKSCTPYELRTIDVFD---GNSGKMMCQL--YDPESSGISSLNEFNP-MGDT 414

Query: 331 LATGGGGGDRCIKFWNTHTGACL 353
           LA+        I  W+       
Sbjct: 415 LASAM---GYHILIWSQQEARTR 434

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  122 bits (309), Expect = 6e-32
 Identities = 55/303 (18%), Positives = 92/303 (30%), Gaps = 70/303 (23%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWA--PDGRHIAIGLNNCQVQLWD 211
           +A  S   T+ +++    T   + T+    GPV  V+WA    G  +A    + +V +W 
Sbjct: 24  MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83

Query: 212 STANR--QLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLIINNDVRVRDHIVE-TYR 264
               R  Q+      H + V S+ W  H    +L     DG +   + +           
Sbjct: 84  EENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID 142

Query: 265 GHNQEVCGLKWS-------------ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
            H   V    W+                ++  +GG DNL+ IW  +  S          L
Sbjct: 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYVLESTL 200

Query: 312 EEHTSAVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
           E H+  V+ +AW P     + +A+     DR    W             G     LL   
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE-------QGPWKKTLL--- 248

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
                                       +       +   + S  G  +A +  D  +  
Sbjct: 249 ----------------------------KEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280

Query: 430 WNV 432
           W  
Sbjct: 281 WKE 283

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  111 bits (280), Expect = 5e-28
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 35/234 (14%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWD 211
           +A  S    V +W   +G  S++      +  V SV WAP   G  + +  ++ +V + +
Sbjct: 70  LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129

Query: 212 STANRQLR--TLRGGHRSRVGSLAWN---------------NHILTTGGMDGLI----IN 250
              N       +   H   V S +W                +    TGG D L+     N
Sbjct: 130 FKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188

Query: 251 NDVRVRDHIVETYRGHNQEVCGLKWS---ASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307
           +D +    +  T  GH+  V  + WS        +AS   D    IW +         + 
Sbjct: 189 SDAQTYV-LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD-NEQGPWKKT 246

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ 361
           L + E+    +   +W     N+LA  GG  D  +  W  +            Q
Sbjct: 247 LLKEEKFPDVLWRASWSL-SGNVLALSGG--DNKVTLWKENLEGKWEPAGEVHQ 297

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score =  105 bits (264), Expect = 1e-25
 Identities = 43/280 (15%), Positives = 90/280 (32%), Gaps = 67/280 (23%)

Query: 176 LVTVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWD--STANRQLRTLRGGHRSRVGSL 232
           +V + +  N  +        G+ +A   ++  +++++     ++ + TL  GH   V  +
Sbjct: 1   MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRV 59

Query: 233 AW----NNHILTTGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWS--ASGQQLASG 285
            W       IL +   DG ++           +  +  H+  V  ++W+    G  L   
Sbjct: 60  DWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA 119

Query: 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG---------- 335
            +D  + + +     + + +  +  ++ H   V + +W P                    
Sbjct: 120 SSDGKVSVVE--FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175

Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395
           GG D  +K W  ++ A                                        + V 
Sbjct: 176 GGADNLVKIWKYNSDA---------------------------------------QTYVL 196

Query: 396 MAELSGHTSRVLFMAQSPD---GCTVASAAADETLRFWNV 432
            + L GH+  V  +A SP       +AS + D T   W  
Sbjct: 197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 19/44 (43%)

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442
            + H   +        G  +A+ ++D+T++ + V G    +  +
Sbjct: 5   ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT 48

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  123 bits (310), Expect = 6e-32
 Identities = 54/286 (18%), Positives = 89/286 (31%), Gaps = 74/286 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC---QVQLW 210
           +A  S   TV LW   D        V    G + SV +  +   +  G  +     V L+
Sbjct: 32  VASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89

Query: 211 DSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQ 268
            ++    L TL G H+  V SL++ + ++ +G  D        +V     +V   + HN 
Sbjct: 90  ATSGEDPLYTLIG-HQGNVCSLSFQDGVVISGSWD-----KTAKVWKEGSLVYNLQAHNA 143

Query: 269 EVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPF 326
            V   K  + S  +  +   D  + +W           + +      H   V+ +A    
Sbjct: 144 SVWDAKVVSFSENKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVD- 194

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
                 +     D  IK  + HTG  L                                 
Sbjct: 195 -DGHFISCSN--DGLIKLVDMHTGDVL--------------------------------- 218

Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                         GH S V  +   P+G  + S   D T+R W+ 
Sbjct: 219 ----------RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK 253

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  101 bits (255), Expect = 3e-24
 Identities = 45/288 (15%), Positives = 91/288 (31%), Gaps = 79/288 (27%)

Query: 157 IALGS------TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
           +  G        V L+  S      L T+    G V S+++      +  G  +   ++W
Sbjct: 74  LLFGGKDTMINGVPLFATSGED--PLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVW 129

Query: 211 DSTANRQLRTLRGGHRSRVGS---LAWNNHILTTGGMDGLIINNDVRV--RDHIVETYRG 265
                  +  L+  H + V     ++++ +   T   D  I     ++   D +++T+ G
Sbjct: 130 KE--GSLVYNLQA-HNASVWDAKVVSFSENKFLTASADKTI-----KLWQNDKVIKTFSG 181

Query: 266 -HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
            HN  V  L     G    S  ND L+ + D     +      L   E H S V  I   
Sbjct: 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVD---MHTG---DVLRTYEGHESFVYCIKLL 234

Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
           P   ++++    G DR ++ W+   G+                                 
Sbjct: 235 P-NGDIVS---CGEDRTVRIWSKENGSLKQV----------------------------- 261

Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                         ++     +  +    +G  +   ++D  +R ++ 
Sbjct: 262 --------------ITLPAISIWSVDCMSNG-DIIVGSSDNLVRIFSQ 294

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 27/188 (14%)

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL-HR 310
           D      +  T +GH+Q+V  +       ++AS   D  + +W +         QWL   
Sbjct: 3   DPFTGYQLSATLKGHDQDVRDVVAV-DDSKVASVSRDGTVRLWSKD-------DQWLGTV 54

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF---WNTHTGACLNSVDTG--SQVCAL 365
           +      + ++ +   +  LL  GG   D  I     + T     L ++  G    VC+L
Sbjct: 55  VYTGQGFLNSVCYDS-EKELLLFGGK--DTMINGVPLFATSGEDPLYTL-IGHQGNVCSL 110

Query: 366 LWNKNERELLS-SHGFTQNQLTLWKYPSMVKMAELSGHTSRVL-FMAQSPDGCTVASAAA 423
            +      ++S S   T     +WK  S+V    L  H + V      S       +A+A
Sbjct: 111 SFQDGV--VISGSWDKT---AKVWKEGSLVY--NLQAHNASVWDAKVVSFSENKFLTASA 163

Query: 424 DETLRFWN 431
           D+T++ W 
Sbjct: 164 DKTIKLWQ 171

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 21/126 (16%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
               S    + L D   G    L T +     V  +   P+G  I     +  V++W   
Sbjct: 198 FISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKE 254

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV------RDHIVETYRG 265
                + +       + S+    N  I+  G  D L+     R+      R    +  +G
Sbjct: 255 NGSLKQVITL-PAISIWSVDCMSNGDIIV-GSSDNLV-----RIFSQEKSRWASEDEIKG 307

Query: 266 HNQEVC 271
             +  C
Sbjct: 308 ELRSGC 313

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 41.3 bits (98), Expect = 4e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 397 AELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           A L GH   V  +    D   VAS + D T+R W+ 
Sbjct: 12  ATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLWSK 46

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  124 bits (313), Expect = 1e-31
 Identities = 55/355 (15%), Positives = 102/355 (28%), Gaps = 111/355 (31%)

Query: 128 SSERTLDAPDLVDDYYLNLLD--WGS-------------------SNVLAIALGS---TV 163
             E  LD  + +D  Y  LL+  W S                       +          
Sbjct: 32  KKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDP 91

Query: 164 YLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223
             W        E   +     PVT V + P    +     +  +++WD       RTL+ 
Sbjct: 92  KEWIP---RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK- 147

Query: 224 GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSA 277
           GH   V  +++  +  +L +   D  I     ++ D      + T  GH+  V  +    
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTI-----KLWDFQGFECIRTMHGHDHNVSSVSIMP 202

Query: 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337
           +G  + S   D  + +W+     +      +     H   V+ +        L+A+    
Sbjct: 203 NGDHIVSASRDKTIKMWE---VQT---GYCVKTFTGHREWVRMVRPNQ-DGTLIAS--CS 253

Query: 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
            D+ ++ W   T  C                                            A
Sbjct: 254 NDQTVRVWVVATKECK-------------------------------------------A 270

Query: 398 ELSGHTSRVLFMAQSPDGC--------------------TVASAAADETLRFWNV 432
           EL  H   V  ++ +P+                       + S + D+T++ W+V
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  118 bits (297), Expect = 2e-29
 Identities = 45/281 (16%), Positives = 77/281 (27%), Gaps = 83/281 (29%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I   S   T+ +W+   G    + T       V  V    DG  IA   N+  V++W   
Sbjct: 207 IVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264

Query: 214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
                  LR  HR  V  ++W   +   +     G                         
Sbjct: 265 TKECKAELRE-HRHVVECISWAPESSYSSISEATG-----------------------SE 300

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
             K    G  L SG  D  + +WD    S+      L  L  H + V+ + +       +
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWD---VSTG---MCLMTLVGHDNWVRGVLFHS-GGKFI 353

Query: 332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP 391
            +     D+ ++ W+     C+                                      
Sbjct: 354 LSCAD--DKTLRVWDYKNKRCM-------------------------------------- 373

Query: 392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                  L+ H   V  +        V + + D+T++ W  
Sbjct: 374 -----KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  122 bits (308), Expect = 2e-31
 Identities = 48/298 (16%), Positives = 94/298 (31%), Gaps = 66/298 (22%)

Query: 157 IALGS---TVYLWDASDGTTSE-----LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
           +A GS   TV +W   +          L  ++     V  V W+ DG ++A    +  V 
Sbjct: 73  LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132

Query: 209 LWDSTANRQ----LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH-IVE 261
           +W++  + +    +  L+  H   V  + W  +  +L +   D  +        D   V 
Sbjct: 133 IWETDESGEEYECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA 191

Query: 262 TYRGHNQEVCGLKWSASGQ--QLASGGNDNLLHIWDRSMASSNSVTQWLHR---LEEHTS 316
              GH   V    +  +    +L SG +D+ + +W       +   +W+      + H  
Sbjct: 192 VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251

Query: 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376
            V  +AW    + L+A+ G   D  +  +    G                          
Sbjct: 252 QVYNVAWGF--NGLIASVGA--DGVLAVYEEVDGEWKVFAKRA----------------- 290

Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ-SPDGCTV-ASAAADETLRFWNV 432
                                 L      +  +     +G T+ A+   D  + FW++
Sbjct: 291 ----------------------LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  119 bits (301), Expect = 2e-30
 Identities = 50/270 (18%), Positives = 88/270 (32%), Gaps = 63/270 (23%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAW--NN 236
              + S +++     +A G  + +++L     +      +      H+  + S+AW  + 
Sbjct: 14  KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETA-HKKAIRSVAWRPHT 70

Query: 237 HILTTGGMDGLII------NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290
            +L  G  D  +       + D      ++    GH  EV G+ WS  G  LA+   D  
Sbjct: 71  SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130

Query: 291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG 350
           + IW+     S    + +  L+EH+  VK + W P    LLA+     D  ++ W     
Sbjct: 131 VWIWE--TDESGEEYECISVLQEHSQDVKHVIWHP-SEALLAS--SSYDDTVRIWK---- 181

Query: 351 ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410
                       C                                +A L+GH   V    
Sbjct: 182 -----DYDDDWEC--------------------------------VAVLNGHEGTVWSSD 204

Query: 411 QSPDGCT--VASAAADETLRFWNVFGAPQV 438
                    + S + D T+R W   G  + 
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  111 bits (279), Expect = 2e-27
 Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 49/222 (22%)

Query: 216 RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLI----INNDVRVRDHIVETYRGHNQEVC 271
             +++L+  ++ ++ S  ++  IL TG  D  I    +  D      ++     H + + 
Sbjct: 5   NLIKSLKL-YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVL-DETAHKKAIR 62

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
            + W      LA+G  D+ + IW +   A        L  +E H + VK +AW       
Sbjct: 63  SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYY 121

Query: 331 LATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390
           LAT     D+ +  W T                       E E +S              
Sbjct: 122 LAT--CSRDKSVWIWETDES------------------GEEYECISV------------- 148

Query: 391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                   L  H+  V  +   P    +AS++ D+T+R W  
Sbjct: 149 --------LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =  104 bits (262), Expect = 3e-25
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 26/215 (12%)

Query: 157 IALGS---TVYLWDASDGT-TSELVTVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
           +A  S   +V++W+  +     E ++V  E +  V  V W P    +A    +  V++W 
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181

Query: 212 --STANRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLI--------INNDVRVRD 257
                   +  L G H   V S  ++       L +G  D  +          +D +   
Sbjct: 182 DYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240

Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA 317
                   H ++V  + W  +G  +AS G D +L +++               L      
Sbjct: 241 CEAILPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYE--EVDGEWKVFAKRALCHGVYE 297

Query: 318 VKAIAWC-PFQSNLLATGGGGGDRCIKFWNTHTGA 351
           +  + W       +LATGG   D  + FW+    A
Sbjct: 298 INVVKWLELNGKTILATGGD--DGIVNFWSLEKAA 330

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  123 bits (310), Expect = 2e-31
 Identities = 60/327 (18%), Positives = 101/327 (30%), Gaps = 60/327 (18%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWD 211
           +A  S    V +W   +G  S++      +  V SV WAP   G  + +  ++ +V + +
Sbjct: 72  LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131

Query: 212 STANRQLR--TLRGGHRSRVGSLAW---------------NNHILTTGGMDGLI----IN 250
              N       +   H   V S +W                +    TGG D L+     N
Sbjct: 132 FKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 190

Query: 251 NDVRVRDHIVETYRGHNQEVCGLKWS---ASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307
           +D +    +  T  GH+  V  + WS        LAS   D    IW +         + 
Sbjct: 191 SDAQTYV-LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD-NEQGPWKKT 248

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCA 364
           L + E+    +   +W     N+LA  GG  D  +  W  +          V  G     
Sbjct: 249 LLKEEKFPDVLWRASWSL-SGNVLALSGG--DNKVTLWKENLEGKWEPAGEVHQGG---- 301

Query: 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA--- 421
                         G        +  P   ++  L    +  +  A+        +A   
Sbjct: 302 -----------GGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYT 350

Query: 422 ----AADETLRFWNVFGAPQVISKSAP 444
               +    L   ++ G   V  K  P
Sbjct: 351 FAKFSTGSMLLTKDIVGKSGVSIKRLP 377

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  121 bits (306), Expect = 7e-31
 Identities = 64/314 (20%), Positives = 102/314 (32%), Gaps = 61/314 (19%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWD 211
           +A  S   T+ +++    T   + T+    GPV  V+WA    G  +A    + +V +W 
Sbjct: 26  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85

Query: 212 STANR--QLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLIINNDVRVRDHI------ 259
               R  Q+      H + V S+ W  H    +L     DG      V V +        
Sbjct: 86  EENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTS 139

Query: 260 VETYRGHNQEVCGLKWS-------------ASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306
                 H   V    W+                ++  +GG DNL+ IW  +  S      
Sbjct: 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYV 197

Query: 307 WLHRLEEHTSAVKAIAWCP--FQSNLLATGGGGGDRCIKFWN--THTGACLNSVDT---- 358
               LE H+  V+ +AW P     + LA+     DR    W      G    ++      
Sbjct: 198 LESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255

Query: 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
              +    W+ +   L  S G   N++TLWK         L G                 
Sbjct: 256 PDVLWRASWSLSGNVLALSGG--DNKVTLWK-------ENLEGKWEPAG----EVHQGGG 302

Query: 419 ASAAADETLRFWNV 432
            S     T + ++ 
Sbjct: 303 GSGGGGATSKEFDG 316

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  104 bits (261), Expect = 1e-24
 Identities = 42/272 (15%), Positives = 86/272 (31%), Gaps = 66/272 (24%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWD--STANRQLRTLRGGHRSRVGSLAW----NN 236
           N  +        G+ +A   ++  +++++     ++ + TL  GH   V  + W      
Sbjct: 11  NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFG 69

Query: 237 HILTTGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWS--ASGQQLASGGNDNLLHI 293
            IL +   DG ++           +  +  H+  V  ++W+    G  L    +D  + +
Sbjct: 70  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129

Query: 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG----------GGGDRCIK 343
            +     + + +  +  ++ H   V + +W P                    GG D  +K
Sbjct: 130 VE--FKENGTTSPII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185

Query: 344 FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT 403
            W  ++ A                                        + V  + L GH+
Sbjct: 186 IWKYNSDA---------------------------------------QTYVLESTLEGHS 206

Query: 404 SRVLFMAQSPD---GCTVASAAADETLRFWNV 432
             V  +A SP       +AS + D T   W  
Sbjct: 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 50/176 (28%)

Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319
           V     HN+ +        G++LA+  +D  + I++    +     + +  L  H   V 
Sbjct: 4   VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----KLIDTLTGHEGPVW 59

Query: 320 AIAWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH 378
            + W       +LA+     D  +  W    G                            
Sbjct: 60  RVDWAHPKFGTILAS--CSYDGKVLIWKEENGRW-------------------------- 91

Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD--GCTVASAAADETLRFWNV 432
                           ++A  + H++ V  +  +P   G  +  A++D  +     
Sbjct: 92  ---------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 46/129 (35%)

Query: 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCAL 365
             +     H   +       +    LAT     D+ IK +          V+  +     
Sbjct: 2   SMVVIANAHNELIHDAVLDYY-GKRLAT--CSSDKTIKIFE---------VEGETHKL-- 47

Query: 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD--GCTVASAAA 423
                                         +  L+GH   V  +  +    G  +AS + 
Sbjct: 48  ------------------------------IDTLTGHEGPVWRVDWAHPKFGTILASCSY 77

Query: 424 DETLRFWNV 432
           D  +  W  
Sbjct: 78  DGKVLIWKE 86

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 7/44 (15%), Positives = 19/44 (43%)

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442
            + H   +        G  +A+ ++D+T++ + V G    +  +
Sbjct: 7   ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT 50

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  123 bits (311), Expect = 3e-31
 Identities = 52/271 (19%), Positives = 91/271 (33%), Gaps = 67/271 (24%)

Query: 166 WDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH 225
           W     +   +    + +  V  +    D + I  GL +  +++WD       R L  GH
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GH 172

Query: 226 RSRVGSLAWNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQ 281
              V  L ++  ++ TG  D     + VRV D     ++ T   H + V  L++  +   
Sbjct: 173 TGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGM 225

Query: 282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
           + +   D  + +WD    +S +       L  H +AV  +    F    + +    GDR 
Sbjct: 226 MVTCSKDRSIAVWD---MASPTDITLRRVLVGHRAAVNVVD---FDDKYIVS--ASGDRT 277

Query: 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG 401
           IK WNT T   +                                             L+G
Sbjct: 278 IKVWNTSTCEFV-------------------------------------------RTLNG 294

Query: 402 HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           H   +           V S ++D T+R W++
Sbjct: 295 HKRGI--ACLQYRDRLVVSGSSDNTIRLWDI 323

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  117 bits (295), Expect = 4e-29
 Identities = 53/286 (18%), Positives = 89/286 (31%), Gaps = 78/286 (27%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I  G    T+ +WD +         +    G V  +    D R I  G ++  V++WD  
Sbjct: 146 IVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCL--QYDERVIITGSSDSTVRVWDVN 201

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD-------HIVETYRGH 266
               L TL   H   V  L +NN ++ T   D       + V D        +     GH
Sbjct: 202 TGEMLNTLIH-HCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGH 255

Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF 326
              V  +      + + S   D  + +W+    S+      +  L  H   +  +    +
Sbjct: 256 RAAVNVV--DFDDKYIVSASGDRTIKVWN---TSTCEF---VRTLNGHKRGIACLQ---Y 304

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
           +  L+ +G    D  I+ W+   GACL                                 
Sbjct: 305 RDRLVVSGSS--DNTIRLWDIECGACL--------------------------------- 329

Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                       L GH   V  +    D   + S A D  ++ W++
Sbjct: 330 ----------RVLEGHEELVRCIR--FDNKRIVSGAYDGKIKVWDL 363

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  105 bits (263), Expect = 8e-25
 Identities = 39/208 (18%), Positives = 78/208 (37%), Gaps = 26/208 (12%)

Query: 157 IALGS---TVYLWDASDGTTSELV-TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           +   S   ++ +WD +  T   L   +      V  V    D ++I     +  +++W++
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIKVWNT 283

Query: 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQ 268
           +    +RTL G H+  +  L + + ++ +G  D  I     R+ D      +    GH +
Sbjct: 284 STCEFVRTLNG-HKRGIACLQYRDRLVVSGSSDNTI-----RLWDIECGACLRVLEGHEE 337

Query: 269 EVCGLKWSASGQQLASGGNDNLLHIWD---RSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
            V  +      +++ SG  D  + +WD        + + T  L  L EH+  V  +    
Sbjct: 338 LVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ--- 392

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACL 353
           F    + +     D  I  W+       
Sbjct: 393 FDEFQIVSSSH--DDTILIWDFLNDPAA 418

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  123 bits (310), Expect = 5e-31
 Identities = 56/275 (20%), Positives = 95/275 (34%), Gaps = 71/275 (25%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL 221
               W    G       +   +  V +      G  I  G ++  +++W +   + LRTL
Sbjct: 99  IDTNWRR--GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL 155

Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQEVCGLKWSA 277
             GH   V S    ++I+ +G  D       ++V +      + T  GH   V  +    
Sbjct: 156 V-GHTGGVWSSQMRDNIIISGSTD-----RTLKVWNAETGECIHTLYGHTSTVRCMHL-- 207

Query: 278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG 337
             +++ SG  D  L +WD            LH L  H +AV+ +    +    + +  G 
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQC------LHVLMGHVAAVRCVQ---YDGRRVVS--GA 256

Query: 338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA 397
            D  +K W+  T  CL++                                          
Sbjct: 257 YDFMVKVWDPETETCLHT------------------------------------------ 274

Query: 398 ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
            L GHT+RV   +   DG  V S + D ++R W+V
Sbjct: 275 -LQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV 306

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  119 bits (301), Expect = 9e-30
 Identities = 63/281 (22%), Positives = 95/281 (33%), Gaps = 65/281 (23%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +  GS   T+ +WD   G    L  +      V  V    DGR +  G  +  V++WD  
Sbjct: 212 VVSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPE 267

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQE 269
               L TL+ GH +RV SL ++   + +G +D  I     RV D    + + T  GH   
Sbjct: 268 TETCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSI-----RVWDVETGNCIHTLTGHQSL 321

Query: 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
             G+        L SG  D+ + IWD     +    Q L    +H SAV  +    F  N
Sbjct: 322 TSGM--ELKDNILVSGNADSTVKIWD---IKTGQCLQTLQGPNKHQSAVTCLQ---FNKN 373

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389
            + T     D  +K W+  TG  +                  R L++             
Sbjct: 374 FVIT--SSDDGTVKLWDLKTGEFI------------------RNLVTLE----------- 402

Query: 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
                      G    V  +  S      A  + + T    
Sbjct: 403 ---------SGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  115 bits (291), Expect = 2e-28
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 75/283 (26%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I  GS   T+ +W A  G    L T+    G V S     +   I  G  +  +++W++ 
Sbjct: 132 IVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE 187

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQE 269
               + TL G H S V  +  +   + +G  D  +     RV D      +    GH   
Sbjct: 188 TGECIHTLYG-HTSTVRCMHLHEKRVVSGSRDATL-----RVWDIETGQCLHVLMGHVAA 241

Query: 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
           V  +++   G+++ SG  D ++ +WD     + +    LH L+ HT+ V ++    F   
Sbjct: 242 VRCVQYD--GRRVVSGAYDFMVKVWD---PETETC---LHTLQGHTNRVYSLQ---FDGI 290

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK 389
            + +G    D  I+ W+  TG C+                                    
Sbjct: 291 HVVSGSL--DTSIRVWDVETGNCI------------------------------------ 312

Query: 390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                    L+GH S    M    +   + S  AD T++ W++
Sbjct: 313 -------HTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  103 bits (260), Expect = 3e-24
 Identities = 53/285 (18%), Positives = 102/285 (35%), Gaps = 76/285 (26%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           I  GS   T+ +W+A  G    + T+      V  ++       +  G  +  +++WD  
Sbjct: 172 IISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIE 227

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQE 269
             + L  L G H + V  + ++   + +G  D ++     +V D      + T +GH   
Sbjct: 228 TGQCLHVLMG-HVAAVRCVQYDGRRVVSGAYDFMV-----KVWDPETETCLHTLQGHTNR 281

Query: 270 VCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327
           V    +S    G  + SG  D  + +WD     + +    +H L  H S    +     +
Sbjct: 282 V----YSLQFDGIHVVSGSLDTSIRVWD---VETGNC---IHTLTGHQSLTSGME---LK 328

Query: 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387
            N+L +G    D  +K W+  TG CL                                  
Sbjct: 329 DNILVSGNA--DSTVKIWDIKTGQCLQ--------------------------------- 353

Query: 388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                   +   + H S V  +  + +   V +++ D T++ W++
Sbjct: 354 -------TLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 389

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score =  120 bits (304), Expect = 9e-31
 Identities = 39/293 (13%), Positives = 84/293 (28%), Gaps = 70/293 (23%)

Query: 162 TVYLWDASDGTTSELVTVDDENG--PVTSVNWAPDGRHIAIGLNNCQVQLWD-STANRQL 218
            + L++   G    L  ++        T    +   R++A G     + +W+       +
Sbjct: 45  VIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV 104

Query: 219 RTLRGGHRSRVGSLAW--------NNHILTTGGMDGLIINNDVRVRDHIV---ETYRGHN 267
            +++ GH+  + ++              + TG  DG +   D R +D  V   E  +G N
Sbjct: 105 YSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163

Query: 268 QEVC-----GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
           +  C     G  ++   + + +G ++  + ++D            L       + V ++ 
Sbjct: 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR-------NMALRWETNIKNGVCSLE 216

Query: 323 WCPF--QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           +       N L       +     ++  T                           + GF
Sbjct: 217 FDRKDISMNKLVA--TSLEGKFHVFDMRTQH------------------------PTKGF 250

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNV 432
                                H S V  +   P    +  +A     L  W  
Sbjct: 251 ASVSEK--------------AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKY 289

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score =  104 bits (262), Expect = 5e-25
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 37/230 (16%)

Query: 157 IALGS---TVYLWDASDGTTSELV-------TVDDENGPVTSVNWAPDGRHIAIGLNNCQ 206
           I  GS   TV +WD                    D         +  + R +  G +N  
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191

Query: 207 VQLWDSTANRQLRTLRGGHRSRVGSLAW-----NNHILTTGGMDGLI----INNDVRVRD 257
           ++L+D   N  LR      ++ V SL +     + + L    ++G      +      + 
Sbjct: 192 IKLFD-LRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249

Query: 258 HIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWD------RSMASSNSVTQW--- 307
               + + H   V  ++     ++L  + G    LH+W       RS   S  +      
Sbjct: 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309

Query: 308 ----LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
               L  +   T  + ++ W P +  L        D+ ++         +
Sbjct: 310 SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF--DQTVRVLIVTKLNKI 357

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 23/186 (12%), Positives = 44/186 (23%), Gaps = 61/186 (32%)

Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGG----NDNLLHIWDRSMASSNSVTQWLHRLEEH 314
           I    +G N  V   KW     +  + G       ++ +++            L R  E 
Sbjct: 10  IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI-----QHGDLKLLREIEK 64

Query: 315 TSAVKAIAWCPF--QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER 372
              +K   +     Q   LAT  G     +  WN                          
Sbjct: 65  AKPIKCGTFGATSLQQRYLAT--GDFGGNLHIWNLEAPEMP------------------- 103

Query: 373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV------LFMAQSPDGCTVASAAADET 426
                                  +  + GH   +        +        + + + D T
Sbjct: 104 -----------------------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140

Query: 427 LRFWNV 432
           ++ W+ 
Sbjct: 141 VKVWDP 146

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 17/136 (12%), Positives = 31/136 (22%), Gaps = 40/136 (29%)

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG-GDRCIKFWNTHTGACLNSV 356
           M++        H  +     V    W P  +  +  G    G   I+ +    G      
Sbjct: 1   MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL---- 56

Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
                                               +++  E +       F A S    
Sbjct: 57  -----------------------------------KLLREIEKAKPIKCGTFGATSLQQR 81

Query: 417 TVASAAADETLRFWNV 432
            +A+      L  WN+
Sbjct: 82  YLATGDFGGNLHIWNL 97

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  121 bits (306), Expect = 3e-30
 Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 83/303 (27%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           ++       +  W        +  T+      V +     +  ++  G ++  ++++DS 
Sbjct: 93  LSFLENIFILKNWYN-PKFVPQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSI 150

Query: 214 ANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHNQ 268
             + L  L G H   V +L + +  IL +G  D       VRV D         + GHN 
Sbjct: 151 NKKFLLQLSG-HDGGVWALKYAHGGILVSGSTD-----RTVRVWDIKKGCCTHVFEGHNS 204

Query: 269 EVCGLK--WSASGQQLASGGNDNLLHIWD-----------------RSMASSNSVTQWLH 309
            V  L      + + + +G  DN LH+W                      +      ++ 
Sbjct: 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264

Query: 310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
            L  H ++V+ ++      N++ +G    D  +  W+     CL                
Sbjct: 265 VLRGHMASVRTVS---GHGNIVVSGSY--DNTLIVWDVAQMKCL---------------- 303

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
                                        LSGHT R+       +     SA+ D T+R 
Sbjct: 304 ---------------------------YILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336

Query: 430 WNV 432
           W++
Sbjct: 337 WDL 339

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  106 bits (268), Expect = 3e-25
 Identities = 55/287 (19%), Positives = 90/287 (31%), Gaps = 51/287 (17%)

Query: 159 LGSTVYLWDA-----SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +  +  LW       +  +     +++ +           D   ++   N   ++ W + 
Sbjct: 49  IRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNP 108

Query: 214 ANRQLR-TLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRD----HIVETYRGHN 267
                R TLR GH + V +     ++ + TG  D +I     RV D      +    GH+
Sbjct: 109 KFVPQRTTLR-GHMTSVITCLQFEDNYVITGADDKMI-----RVYDSINKKFLLQLSGHD 162

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK--AIAWCP 325
             V  LK++  G  L SG  D  + +WD  +          H  E H S V+   I    
Sbjct: 163 GGVWALKYA-HGGILVSGSTDRTVRVWD--IKKG----CCTHVFEGHNSTVRCLDIVEYK 215

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
                + T  G  D  +  W     + +           +     E              
Sbjct: 216 -NIKYIVT--GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV--------- 263

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                        L GH + V     S  G  V S + D TL  W+V
Sbjct: 264 -----------GVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDV 297

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  102 bits (256), Expect = 8e-24
 Identities = 46/313 (14%), Positives = 102/313 (32%), Gaps = 65/313 (20%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVT--SVNWAPDGRHIAIGLNNCQVQLWD 211
           +  GS   TV +WD   G        +  N  V    +    + ++I  G  +  + +W 
Sbjct: 176 LVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233

Query: 212 STANRQL-----------------------RTLRGGHRSRVGSLAWNNHILTTGGMDGLI 248
                 +                         LRG H + V +++ + +I+ +G  D   
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG-HMASVRTVSGHGNIVVSGSYD--- 289

Query: 249 INNDVRVRD----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
             N + V D      +    GH   +    +    ++  S   D  + IWD     +  +
Sbjct: 290 --NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD---LENGEL 344

Query: 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364
              ++ L+ HT+ V  +         L +     D  I+ W+ +  +   S    +    
Sbjct: 345 ---MYTLQGHTALVGLLR---LSDKFLVS--AAADGSIRGWDANDYSRKFSYHHTNLSAI 396

Query: 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVK-----MAELSGHTSRVLFMAQSPDGCTVA 419
             +  ++  L+S    ++NQ  ++     ++      A +     ++  +          
Sbjct: 397 TTFYVSDNILVSG---SENQFNIYN----LRSGKLVHANILKDADQIWSVNFKGKTL--V 447

Query: 420 SAAADETLRFWNV 432
           +A   +   F  +
Sbjct: 448 AAVEKDGQSFLEI 460

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 353 LNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411
            N +     + +L  ++N  +++       +  L    + S      L+   S+      
Sbjct: 27  FNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLS 86

Query: 412 SPDGCTVASAAADETLRFWNV 432
             D   ++       L+ W  
Sbjct: 87  QQDRLRLSFLENIFILKNWYN 107

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score =  120 bits (302), Expect = 4e-30
 Identities = 54/291 (18%), Positives = 102/291 (35%), Gaps = 30/291 (10%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRT 220
            V     +      +  V     PV  + W P +   IA G  +C V +W+      +  
Sbjct: 60  LVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119

Query: 221 LRG------GHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEV 270
           LR       GH  RVG +AW+    ++L + G D +I+  DV     ++      H   +
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179

Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA--IAWCPFQS 328
             + WS  G  + +   D  + + +       +V   +   +      +     +   + 
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIE---PRKGTV---VAEKDRPHEGTRPVHAVFVS-EG 232

Query: 329 NLLATGGGG-GDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
            +L TG     +R +  W+T        L  +DT S V    ++ +   +    G   + 
Sbjct: 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC-GKGDSS 291

Query: 385 LTLWKYPS-MVKMAELSGHTSR--VLFMAQSPDGCTVASAAADETLRFWNV 432
           +  ++  S    +  LS  +S+     M   P           E  RF+ +
Sbjct: 292 IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR--GLEVNKCEIARFYKL 340

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 22/230 (9%)

Query: 218 LRTLRGGHRSRVGSLAWN---NHILTTGGMDG---LIINNDVRVRDHIVETYRGHNQEVC 271
           +R  +    S  G  A N     ++      G   ++        D  V    GH   V 
Sbjct: 28  VRVSQTTWDS--GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVL 85

Query: 272 GLKWS-ASGQQLASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN 329
            + W   +   +ASG  D  + +W+         + + +  LE HT  V  +AW P   N
Sbjct: 86  DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN 145

Query: 330 LLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFTQNQLT 386
           +L +   G D  I  W+  TGA + ++        + ++ W+++   + +       ++ 
Sbjct: 146 VLLS--AGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT--SCRDKRVR 201

Query: 387 LWKYPSMVKMAELSGHTS--RVLFMAQSPDGCTVASAAA---DETLRFWN 431
           + +      +AE        R +      +G  + +  +   +  +  W+
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 25/214 (11%)

Query: 152 SNVLAIALG-STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW 210
            NVL  A   + + +WD   G     +  D     + SV+W+ DG  I     + +V++ 
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203

Query: 211 DSTANRQLRTLRGGHRS-RVGSLAW--NNHILTTGGMDGLIINNDVRVRDH------IVE 261
           +      +      H   R     +     ILTTG          V + D       +  
Sbjct: 204 EPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS--ERQVALWDTKHLEEPLSL 261

Query: 262 TYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA--V 318
                +  V    +      +   G  D+ +  ++       S   +LH L   +S    
Sbjct: 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE-----ITSEAPFLHYLSMFSSKESQ 316

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352
           + + + P +               +F+  H   C
Sbjct: 317 RGMGYMPKRGLE-----VNKCEIARFYKLHERKC 345

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  118 bits (297), Expect = 8e-30
 Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 86/302 (28%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGLNNCQVQ 208
           +  GS   TV +W   +   +    +  +     N  V+ +  + +         +  ++
Sbjct: 42  LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101

Query: 209 LWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV------RDHIV 260
           LWD       +    GH+S V S+A+  +N  + + G +      ++++           
Sbjct: 102 LWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGECKFSS 155

Query: 261 ETYRGHNQEV----------CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR 310
                H+  V             K        AS G D  L +W+ +        Q  + 
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYT 208

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKN 370
            + H S V  ++  P     +AT  GG D+ +  W+                        
Sbjct: 209 FKAHESNVNHLSISP-NGKYIAT--GGKDKKLLIWDILNLTYP----------------- 248

Query: 371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
                                            S +  +A +P    VA    D+ ++ +
Sbjct: 249 --------------------------QREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIF 281

Query: 431 NV 432
           N+
Sbjct: 282 NL 283

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score =  103 bits (259), Expect = 1e-24
 Identities = 49/299 (16%), Positives = 87/299 (29%), Gaps = 90/299 (30%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWA------PDGRHIAIGLNNCQVQLWDSTAN 215
           ++ +     G       ++  +  VTS+          D   +  G  +  V +W     
Sbjct: 6   SLDIQVVKRGI------LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEE 59

Query: 216 RQ-------LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD----HIVET 262
            Q        + L  GH   V  LA    N    +   D       +R+ D       + 
Sbjct: 60  EQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWD-----KTLRLWDLRTGTTYKR 113

Query: 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA 322
           + GH  EV  + +S   +Q+ S G +  + +W+                E H+  V  + 
Sbjct: 114 FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LGECKFSSAEKENHSDWVSCVR 169

Query: 323 WCP---------FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373
           + P           +   A+   G D  +K WNT                          
Sbjct: 170 YSPIMKSANKVQPFAPYFAS--VGWDGRLKVWNT-NFQIR-------------------- 206

Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                       H S V  ++ SP+G  +A+   D+ L  W++
Sbjct: 207 -----------------------YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 95.0 bits (237), Expect = 9e-22
 Identities = 31/217 (14%), Positives = 68/217 (31%), Gaps = 29/217 (13%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQ------- 206
           I        + LW+            ++ +  V+ V ++P  +                 
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192

Query: 207 ---VQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE 261
              +++W++   +   T +  H S V  L+   N   + TGG D  ++  D+    +  +
Sbjct: 193 DGRLKVWNTNF-QIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-Q 249

Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-------RSMASSNSVTQWLHRLEEH 314
                   +  + ++   Q +A G  D  + I++                       +  
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA 351
                ++AW       L  G    D  I+ ++  T A
Sbjct: 309 NPQCTSLAWNA-LGKKLFAGFT--DGVIRTFSFETSA 342

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 53/189 (28%)

Query: 253 VRVRDHIVETYRGHNQEVC------GLKWSASGQQLASGGNDNLLHIWD-RSMASSNSVT 305
           + ++        GH+  V         K +     L SG  D  + IW       +    
Sbjct: 7   LDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG 66

Query: 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCAL 365
                L  H   V  +A    ++    +     D+ ++ W+  TG               
Sbjct: 67  IPHKALTGHNHFVSDLALSQ-ENCFAISSSW--DKTLRLWDLRTGTTY------------ 111

Query: 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE 425
                                              GH S V  +A SPD   + SA A+ 
Sbjct: 112 -------------------------------KRFVGHQSEVYSVAFSPDNRQILSAGAER 140

Query: 426 TLRFWNVFG 434
            ++ WN+ G
Sbjct: 141 EIKLWNILG 149

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 53/151 (35%)

Query: 287 NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS-----NLLATGGGGGDRC 341
           +++ L I                 LE H+  V +I     Q       +L +G    D+ 
Sbjct: 3   DNSSLDIQVVK----------RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSR--DKT 50

Query: 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG 401
           +  W  +            +                                     L+G
Sbjct: 51  VMIWKLYEEEQNGYFGIPHKA------------------------------------LTG 74

Query: 402 HTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           H   V  +A S + C   S++ D+TLR W++
Sbjct: 75  HNHFVSDLALSQENCFAISSSWDKTLRLWDL 105

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  118 bits (297), Expect = 1e-29
 Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 68/283 (24%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH-IAIGLNNCQVQLWDSTANRQLRT 220
             ++            T    +  VTS+ W P     +A+G     + LWD     +   
Sbjct: 54  EPFIRSLKSY--KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF 111

Query: 221 LRG-GHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRD------HIVETYRGHNQEV 270
           ++G G    +  + +   N + L    + G        +RD       +       +   
Sbjct: 112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT-----TLRDFSGSVIQVFAKTDSWDYWY 166

Query: 271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL 330
           C +  S S Q LA+G +   L +              + + + H + V    + P    L
Sbjct: 167 CCVDVSVSRQMLATGDSTGRLLLLGLD-------GHEIFKEKLHKAKVTHAEFNPRCDWL 219

Query: 331 LATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY 390
           +AT     D  +K W+       NS                                   
Sbjct: 220 MAT--SSVDATVKLWDLRNIKDKNS----------------------------------- 242

Query: 391 PSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNV 432
                      H   V     +P D   + +      +R ++ 
Sbjct: 243 -----YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  115 bits (291), Expect = 7e-29
 Identities = 36/286 (12%), Positives = 79/286 (27%), Gaps = 60/286 (20%)

Query: 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220
               L D S          D  +     V+ +   + +A G +  ++ L       ++  
Sbjct: 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFK 199

Query: 221 LRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVE--TYRGHNQEVCGLKW 275
            +  H+++V    +N   + ++ T  +D  +   D+R             H + V    +
Sbjct: 200 EKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF 258

Query: 276 S-ASGQQLASGGNDNLLHIWDRSMAS--------SNSVTQWLHRLEEHTSAVKAIAWCPF 326
           +     +L +    N + ++     S         +   Q L  ++     +  +     
Sbjct: 259 NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
             +          R I  ++ ++G  ++                    L           
Sbjct: 319 YPDDQLLLND--KRTIDIYDANSGGLVHQ-------------------LRDPNAA----- 352

Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                         G  S   F   SP G  +AS      +  WN 
Sbjct: 353 --------------GIISLNKF---SPTGDVLAS-GMGFNILIWNR 380

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  102 bits (256), Expect = 4e-24
 Identities = 36/255 (14%), Positives = 74/255 (29%), Gaps = 60/255 (23%)

Query: 186 VTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILT 240
           +  +  +  G+ I   L  C  +  +    + +  RT       RV SL W   +   + 
Sbjct: 32  LHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASP-FDRRVTSLEWHPTHPTTVA 90

Query: 241 TGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWS-ASGQQLASGGNDNLLHIWDRSM 298
            G   G II  D  V++        G    + G+K++  +  QL          + D S 
Sbjct: 91  VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150

Query: 299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT 358
           +      Q   + +        +        +LAT  G     +                
Sbjct: 151 SVI----QVFAKTDSWDYWYCCVDVSV-SRQMLAT--GDSTGRLLLLGLDGH-------- 195

Query: 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT- 417
                                               ++ +   H ++V     +P     
Sbjct: 196 ------------------------------------EIFKEKLHKAKVTHAEFNPRCDWL 219

Query: 418 VASAAADETLRFWNV 432
           +A+++ D T++ W++
Sbjct: 220 MATSSVDATVKLWDL 234

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 162 TVYLWDASDGT-TSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLR 219
           TV LWD  +    +  +       PV +  + P D   +       +++++ S    +  
Sbjct: 228 TVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287

Query: 220 TLRG-----GHRSRVGSLAWN---NHILTTGGMDGLIINND---VRVRD----HIVETYR 264
            +                 W+   + I+     D  ++ ND   + + D     +V   R
Sbjct: 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLR 347

Query: 265 GHNQE--VCGLKWSASGQQLASGGNDNLLHIWDRS 297
             N    +   K+S +G  LASG     + IW+R 
Sbjct: 348 DPNAAGIISLNKFSPTGDVLASG-MGFNILIWNRE 381

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 48/172 (27%)

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
           G    +  +  S+ GQ + +     L   + RS+ S     +           V ++ W 
Sbjct: 27  GQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSY----KLHRTASPFDRRVTSLEWH 82

Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
           P     +A G       I  W+          D  ++   +                   
Sbjct: 83  PTHPTTVAVGSK--GGDIILWD---------YDVQNKTSFI------------------- 112

Query: 385 LTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGA 435
                        +  G    +  M  +  +   +  ++        +  G+
Sbjct: 113 -------------QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS 151

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  121 bits (304), Expect = 1e-29
 Identities = 58/308 (18%), Positives = 92/308 (29%), Gaps = 80/308 (25%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWA--PDGRHIAIGLNNCQVQLWD 211
           +A  S   T+ +++    T   + T+    GPV  V+WA    G  +A    + +V +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83

Query: 212 STANR--QLRTLRGGHRSRVGSLAWNNH----ILTTGGMDGLIINNDVRVRDHI------ 259
               R  Q+      H + V S+ W  H    +L     DG      V V +        
Sbjct: 84  EENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTS 137

Query: 260 VETYRGHNQEVCGLKWS-------------ASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306
                 H   V    W+                ++  +GG DNL+ IW  +  S      
Sbjct: 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYV 195

Query: 307 WLHRLEEHTSAVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA 364
               LE H+  V+ +AW P     + LA+     DR    W             G     
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNE-------QGPWKKT 246

Query: 365 LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424
           LL                               +       +   + S  G  +A +  D
Sbjct: 247 LL-------------------------------KEEKFPDVLWRASWSLSGNVLALSGGD 275

Query: 425 ETLRFWNV 432
             +  W  
Sbjct: 276 NKVTLWKE 283

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  103 bits (257), Expect = 1e-23
 Identities = 45/280 (16%), Positives = 88/280 (31%), Gaps = 67/280 (23%)

Query: 176 LVTVDDE-NGPVTSVNWAPDGRHIAIGLNNCQVQLWD--STANRQLRTLRGGHRSRVGSL 232
           +V + +  N  +        G+ +A   ++  +++++     ++ + TL  GH   V  +
Sbjct: 1   MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRV 59

Query: 233 AW----NNHILTTGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWS--ASGQQLASG 285
            W       IL +   DG ++           +  +  H+  V  ++W+    G  L   
Sbjct: 60  DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119

Query: 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG---------- 335
            +D  + + +      N  T     ++ H   V + +W P                    
Sbjct: 120 SSDGKVSVVE---FKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175

Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK 395
           GG D  +K W  ++ A                                        + V 
Sbjct: 176 GGADNLVKIWKYNSDA---------------------------------------QTYVL 196

Query: 396 MAELSGHTSRVLFMAQSPD---GCTVASAAADETLRFWNV 432
            + L GH+  V  +A SP       +AS + D T   W  
Sbjct: 197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 66.5 bits (162), Expect = 7e-12
 Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 30/251 (11%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLNNCQVQLW 210
           +A  S   T  +W   +       T+  E      +   +W+  G  +A+   + +V LW
Sbjct: 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

Query: 211 DSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
                 +       H+   GS          GG        D   ++ I   +   N E+
Sbjct: 282 KENLEGKWEPAGEVHQGGGGS----------GGGGATSKEFDGPCQNEIDLLFSECNDEI 331

Query: 271 CGLKWSASGQQLASGGN------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
              K     ++  +          ++L   D    S  S+ +    L+            
Sbjct: 332 DNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDK 391

Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ------VCALLWNKNERELLSSH 378
             +   +          I   +      L+ ++  S       + ++L+  +        
Sbjct: 392 EIEKVTIEARKSNPYPQISESSLLFKDALDYMEKTSSDYNLWKLSSILF--DPVSYPYKT 449

Query: 379 GFTQNQLTLWK 389
              Q ++ L K
Sbjct: 450 DNDQVKMALLK 460

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 19/44 (43%)

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS 442
            + H   +        G  +A+ ++D+T++ + V G    +  +
Sbjct: 5   ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT 48

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score =  115 bits (289), Expect = 2e-28
 Identities = 46/324 (14%), Positives = 92/324 (28%), Gaps = 80/324 (24%)

Query: 157 IALGS---TVYLWDA-----------------------SDGTTSELVTVDDENGPVTSVN 190
               S    + +WD                               +     E   V + +
Sbjct: 29  TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88

Query: 191 WAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG----------------GHRSRVGSLA- 233
           ++ D     I   +   ++     +     ++                  HR     +  
Sbjct: 89  FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG 148

Query: 234 ----WNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN 289
               W  H          +  +        VE+    +Q    +  S  G  +A+G N+ 
Sbjct: 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNG 207

Query: 290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTH 348
            + I + S        +  H +  ++++++++ + P Q +LLA         CI  + T 
Sbjct: 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETE 266

Query: 349 TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF 408
            G  + S+                                   S         H+S V+ 
Sbjct: 267 FGERIGSLS------------------------------VPTHSSQASLGEFAHSSWVMS 296

Query: 409 MAQSPDGCTVASAAADETLRFWNV 432
           ++ +  G T+ SA  D  LRFW+V
Sbjct: 297 LSFNDSGETLCSAGWDGKLRFWDV 320

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 35/330 (10%), Positives = 85/330 (25%), Gaps = 98/330 (29%)

Query: 151 SSNVLAIALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-----GRHIAIGL 202
           S ++L   +     T  +              D +     ++ W           +    
Sbjct: 90  SGDLLFYRITREDETKKVIFEKLDLLDS----DMKKHSFWALKWGASNDRLLSHRLVATD 145

Query: 203 NNCQVQLWD---------------STANRQLRTLRG--GHRSRVGSLAWN-NHILTTGGM 244
                 +W                S       T+           S+  +   ++ TG  
Sbjct: 146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFN 205

Query: 245 DGLI----INNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDN---LLHIWD- 295
           +G +    ++    + +     +   ++  +  +K+S  G  LA   + N    + +++ 
Sbjct: 206 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265

Query: 296 ------RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT 349
                  S++     +Q       H+S V ++++       L + G   D  ++FW+  T
Sbjct: 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGW--DGKLRFWDVKT 322

Query: 350 GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409
              +                                             L+ H   +   
Sbjct: 323 KERI-------------------------------------------TTLNMHCDDIEIE 339

Query: 410 ----AQSPDGCTVASAAADET---LRFWNV 432
               A    G ++A     +     + W  
Sbjct: 340 EDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 88.3 bits (219), Expect = 3e-19
 Identities = 42/244 (17%), Positives = 74/244 (30%), Gaps = 54/244 (22%)

Query: 157 IALGS---TVYLWDASDG----------------TTSELVTVDDENGPVTSVNWAPDGRH 197
           +       T Y+W                         + +    +   TSV+ +  G  
Sbjct: 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL- 199

Query: 198 IAIGLNNCQVQLWDSTANRQLRTLRG-----GHRSRVGSLAW--NNHILTTGGMDG---- 246
           IA G NN  VQ+ + +  R L           + + + S+ +     +L           
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259

Query: 247 -----------LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
                      +   +              H+  V  L ++ SG+ L S G D  L  WD
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319

Query: 296 RSMASSNSVTQWLHRLEEHTSAVK----AIAWCPFQSNLLATGGGGGDR-CIKFWNTHTG 350
             + +     + +  L  H   ++     +A      + LA  G    +   K W +  G
Sbjct: 320 --VKTK----ERITTLNMHCDDIEIEEDILAVDE-HGDSLAEPGVFDVKFLKKGWRSGMG 372

Query: 351 ACLN 354
           A LN
Sbjct: 373 ADLN 376

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 32/210 (15%), Positives = 56/210 (26%), Gaps = 41/210 (19%)

Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV- 318
               + H+ ++     SA      S   D  L +WD  +  + +     +    H S + 
Sbjct: 9   ANAGKAHDADIFS--VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 66

Query: 319 -----KAIAWCPFQSNLLATGG----------GGGDRCIKFWNTHTGACLNSVDTGSQVC 363
                +AI    F+  L+AT               D   K           S        
Sbjct: 67  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-SDMKKHSFW 125

Query: 364 ALLWNKNEREL------------------LSSHGFTQNQLTLWKYPS---MVKMAELSGH 402
           AL W  +   L                          N LTL   P+      +      
Sbjct: 126 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 185

Query: 403 TSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           +     +  S  G  +A+   + T++   +
Sbjct: 186 SQFATSVDISERG-LIATGFNNGTVQISEL 214

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  113 bits (286), Expect = 3e-28
 Identities = 42/286 (14%), Positives = 84/286 (29%), Gaps = 50/286 (17%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +  GS    V  W+  D   +         GPV  V W+ DG  +     +   ++WD  
Sbjct: 57  LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-L 115

Query: 214 ANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE 269
           ++ Q   +   H + V ++ W    N   + TG  D  +   D R  + +    +   + 
Sbjct: 116 SSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM-MVLQLPERC 173

Query: 270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP---F 326
            C          +A+     +++  +      N  +++           + +A       
Sbjct: 174 YCADVIY-PMAVVATAERGLIVYQLE------NQPSEFRRIESPLKHQHRCVAIFKDKQN 226

Query: 327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLT 386
           +    A G   G   I + N                     +++     S+         
Sbjct: 227 KPTGFALGSIEGRVAIHYINPPNP--------AKDNFTFKCHRSNGTNTSA--------- 269

Query: 387 LWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                              V  +A  P   T+A+  +D    FW+ 
Sbjct: 270 -------------PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score =  102 bits (257), Expect = 2e-24
 Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 42/265 (15%)

Query: 186 VTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-----NNHIL 239
            T+  +   G  +      +    + D      +          +G L++       + L
Sbjct: 5   GTTSGFGTSGTSMFGSATTDNHNPMKD------IEVTS-SPDDSIGCLSFSPPTLPGNFL 57

Query: 240 TTGGMDGLIINNDVRVRD------HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293
             G        NDVR  +       I +  + H   V  + WS  G ++ +   D    +
Sbjct: 58  IAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112

Query: 294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAW--CPFQSNLLATGGGGGDRCIKFWNTHTGA 351
           WD    SSN   Q    + +H + VK I W   P   + + T  G  D+ +KFW+T +  
Sbjct: 113 WD---LSSNQAIQ----IAQHDAPVKTIHWIKAP-NYSCVMT--GSWDKTLKFWDTRSSN 162

Query: 352 CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ 411
            +  +    +            ++++       +   +          S    +   +A 
Sbjct: 163 PMMVLQLPERCYCADVIYP-MAVVATAERG-LIVYQLENQPSEFRRIESPLKHQHRCVAI 220

Query: 412 SPDGCT----VASAAADETLRFWNV 432
             D        A  + +  +    +
Sbjct: 221 FKDKQNKPTGFALGSIEGRVAIHYI 245

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 38/295 (12%), Positives = 83/295 (28%), Gaps = 70/295 (23%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNW--APDGRHIAIGLNNCQVQLWD 211
           +   S   T  +WD S   +++ + +   + PV +++W  AP+   +  G  +  ++ WD
Sbjct: 101 VFTASCDKTAKMWDLS---SNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157

Query: 212 STANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVE-TYRGHNQEV 270
           + ++  +  L+   R     + +   ++ T     ++    +  +             + 
Sbjct: 158 TRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVY--QLENQPSEFRRIESPLKHQH 215

Query: 271 CGLKWSASGQ----QLASGGNDNLLHIWDRSMASSNSVTQWL--HR-------LEEHTSA 317
             +      Q      A G  +  + I   +  +          HR         +   A
Sbjct: 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA 275

Query: 318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
           V  IA+ P     LAT G   D    FW+      L                        
Sbjct: 276 VNGIAFHP-VHGTLATVGS--DGRFSFWDKDARTKL------------------------ 308

Query: 378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                                       +     + +G   A A++ +  +    
Sbjct: 309 -------------------KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 68.8 bits (169), Expect = 7e-13
 Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 22/166 (13%)

Query: 151 SSNVLAIALGS-TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL------N 203
              +  +A     + ++   +  +               V    D ++   G        
Sbjct: 179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG 238

Query: 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHI--------------LTTGGMDGLII 249
              +   +     +       HRS   + +    I              L T G DG   
Sbjct: 239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298

Query: 250 NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
             D   R   ++T    +Q +    ++ +G   A   + +     +
Sbjct: 299 FWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 17/102 (16%)

Query: 150 GSSNVLAIALGS---TVYLWDASDGTTSEL-------------VTVDDENGPVTSVNWAP 193
             +     ALGS    V +   +    ++               +   +   V  + + P
Sbjct: 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP 283

Query: 194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN 235
               +A   ++ +   WD  A  +L+T        + +  +N
Sbjct: 284 VHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFN 324

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score =  113 bits (285), Expect = 1e-27
 Identities = 32/347 (9%), Positives = 104/347 (29%), Gaps = 60/347 (17%)

Query: 107 ASASS-------SVQQAKLNKPRRHIPQSSERTLDAPDLV-DDYYLNLLDWGSSNVLAIA 158
           A +S         V   +     + +     R ++  +   ++Y + +  + +     + 
Sbjct: 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186

Query: 159 LGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN 215
             +    V ++D       +++     +G V+S+    +   + +G     + +WD   N
Sbjct: 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN 246

Query: 216 RQLRTLRGGHRSRVGSLAW------NNHILTTGGMDGLIINNDVRVRD----HIVETYRG 265
             +R+   G  + +  +        N+ I+  G          + + +    H    +  
Sbjct: 247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFIN 301

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
            +++     +    + L       +  +   S  S ++                      
Sbjct: 302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN---------------------- 339

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
               +L T        I  ++ +  +   +V + S+   +       ++ ++       L
Sbjct: 340 --DKILLT--DEATSSIVMFSLNELSSSKAVISPSRFSDVFI---PTQVTANLTML---L 389

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMA--QSPDGCTVASAAADETLRFW 430
              K  S   + +   H   +  ++  +  +   + +      +  +
Sbjct: 390 RKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score =  105 bits (264), Expect = 6e-25
 Identities = 38/318 (11%), Positives = 89/318 (27%), Gaps = 54/318 (16%)

Query: 162 TVYLWDASDGTTSELVT---VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218
            + +W+  +    E+ +     D +  VT +   P+    A+   + Q+ +      +Q 
Sbjct: 87  VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE 146

Query: 219 RTLR---------------GGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIV 260
             ++               G +   V   A+ N    +L        +I  D+R     +
Sbjct: 147 SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-ERL 205

Query: 261 ETYRG--HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
           +       +  V  +        L  G    ++ IWD  +  +  +  W        + +
Sbjct: 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD--IRFNVLIRSWSF---GDHAPI 260

Query: 319 KAIAWCPFQSN---LLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNEREL 374
             +  C F      ++   GG     +  WN   G C  +      Q     +       
Sbjct: 261 THVEVCQFYGKNSVIVV--GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF------- 311

Query: 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG 434
                    +L                 +   L      +   + +  A  ++  +++  
Sbjct: 312 -LPIEKGLEELNFC-----------GIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE 359

Query: 435 APQVISKSAPKPNREPFA 452
                +  +P    + F 
Sbjct: 360 LSSSKAVISPSRFSDVFI 377

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 39/277 (14%), Positives = 80/277 (28%), Gaps = 46/277 (16%)

Query: 182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHI 238
           E GP+  +  +P+                 +   + + TL     + + S A        
Sbjct: 34  EFGPIQEIVRSPN---------------MGNLRGKLIATLMENEPNSITSSAVSPGETPY 78

Query: 239 LTTGGMDGLI----INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW 294
           L TG   G+I    +   +    +        +  V  +    +    A    D  + + 
Sbjct: 79  LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138

Query: 295 D----------RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF 344
                      + +         L    ++  AV+  A+   + +LL          +  
Sbjct: 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA--LTNLSRVII 196

Query: 345 WNTHTGACL----NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS 400
           ++  T   L    NS   G+ V ++  ++    L+   G T+  + +W     V +   S
Sbjct: 197 FDIRTLERLQIIENSPRHGA-VSSICIDEECCVLIL--GTTRGIIDIWDIRFNVLIRSWS 253

Query: 401 GHTS----RVLFMAQSPDGCT-VASAAADETLRFWNV 432
                    V            V   ++   L  WN 
Sbjct: 254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score =  104 bits (261), Expect = 5e-25
 Identities = 37/289 (12%), Positives = 85/289 (29%), Gaps = 47/289 (16%)

Query: 157 IALGS---TVYLWDASDGT-TSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWD 211
           + + S   ++ ++         +L+       P+   N+  +    I +G    ++   D
Sbjct: 26  LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85

Query: 212 STANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVR---VRDHIVETYRG 265
              +   + L   + + +G        +  L     DGLI   D R        V+    
Sbjct: 86  LIGSPSFQAL-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144

Query: 266 HNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
           +N +V    ++      +L  G N++ +  +                       ++ +A 
Sbjct: 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR---LPLCEDDNGTIEESGLKYQIRDVAL 201

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN 383
            P +    A     G   ++F++                    +N ++R     H     
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGD---------------DYNSSKRFAFRCHRLNLK 246

Query: 384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                           +     V  +  SP    + +A +D  +  WN+
Sbjct: 247 D---------------TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 28/229 (12%)

Query: 148 DWGSSNVLAIALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWA-PDGRHIAIGLN 203
           ++  +  L I +G+    +   D     + + +T ++    +            +     
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE--ANLGICRICKYGDDKLIAASW 120

Query: 204 NCQVQLWDSTANRQLRTLRGGHR-------SRVGSLAWNNHILTTGGMDGLIINNDVRVR 256
           +  +++ D                      +++ ++  N+  L  G  +  +    + + 
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 257 DHIVETYRGHN---QEVCGLKWSASGQQLASGGNDNLLHIWD-----RSMASSNSVTQWL 308
           +    T        Q           +  A    D  + +           SS       
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240

Query: 309 HRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL 353
           HRL          V +I + P +   L T G   D  I  WN  T   +
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGS--DGIISCWNLQTRKKI 286

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 12/90 (13%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT 240
           +   PV S+ ++P  + +    ++  +  W+    ++++     +   V  +A +++IL 
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC 308

Query: 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
               D     +  +    I +T   +   +
Sbjct: 309 LATSD-----DTFKTNAAIDQTIELNASSI 333

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 31/187 (16%)

Query: 151 SSNVLAIAL-GSTVYLWDASDGTTS-ELVTVDDENGPVTSVNWAP-DGRHIAIG--LNNC 205
           +S+ L + +  S V  +           +        +  V   P +    A        
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 206 QVQLWDSTANRQLRTLRG---GHRSR---------VGSLAWN--NHILTTGGMDGLIINN 251
            V+ +D   +    + R     HR           V S+ ++  +  L T G DG+I   
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
           +++ R  I    + +   V  +  S +   LA+  +            +  +       +
Sbjct: 279 NLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD------------TFKTNAAIDQTI 326

Query: 312 EEHTSAV 318
           E + S++
Sbjct: 327 ELNASSI 333

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score =  103 bits (258), Expect = 8e-25
 Identities = 32/303 (10%), Positives = 76/303 (25%), Gaps = 31/303 (10%)

Query: 151 SSNVLAIALGS-TVYLWDASDGTTSELVTVDDENGPVTSVNWA--PDGRHIAIGLNNCQV 207
              V         ++     D  T   +T  +                  + +     Q+
Sbjct: 47  DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQI 106

Query: 208 QLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIVETY 263
            + DS  N+ LR +     + +  +      N          G I           +   
Sbjct: 107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS 166

Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
              + E            LA    D +L +++    SS         + +  + +K + +
Sbjct: 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYN---LSSPDQASSRFPV-DEEAKIKEVKF 222

Query: 324 CPFQSNLLATGGGGGDRCIKFW------NTHTGACLNSVDTGSQVCALLWNKNERELLSS 377
                  +       D+ +  +       T         +  +       + + + +++ 
Sbjct: 223 AD-NGYWMVV---ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278

Query: 378 HGFTQNQLTLWKYPSMVK---------MAELSGHTSRVLFMAQSPDGCTVASAAADETLR 428
                N LT++K+    K         +   S             DG   A    +++  
Sbjct: 279 SN-ESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFN 337

Query: 429 FWN 431
              
Sbjct: 338 IVA 340

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 53.2 bits (127), Expect = 7e-08
 Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 8/160 (5%)

Query: 276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG 335
                       D  LH     +  S ++T              AI      + LL    
Sbjct: 45  YYDKWVCMCRCEDGALHFT--QLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYP 102

Query: 336 GGGDRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393
           G     I   ++ T   L  ++  S   +  +  +             +  +    Y   
Sbjct: 103 GNQ---ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD 159

Query: 394 VKMAELSGHT-SRVLFMAQSPDGCTVASAAADETLRFWNV 432
            +    S  +           D   +A  + D  L  +N+
Sbjct: 160 SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 97.2 bits (241), Expect = 1e-21
 Identities = 27/256 (10%), Positives = 71/256 (27%), Gaps = 38/256 (14%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTT 241
           +    +  +      +AI     +V ++     +    ++   RS +  + +     L  
Sbjct: 17  SSKPIAAAFDFTQNLLAIATVTGEVHIYG--QQQVEVVIKLEDRSAIKEMRFVKGIYLVV 74

Query: 242 GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-RSMAS 300
                 +    +  +  ++ T     + +  +   AS   +  G  +  + ++D      
Sbjct: 75  INAKDTVYVLSLYSQK-VLTTVFVPGK-ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132

Query: 301 SNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
           S+     L +         S + +I W P     +       +     ++        S 
Sbjct: 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL---ISYEYVTLTYSLVENEIKQSF 189

Query: 357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC 416
                  A   + +E+                              T +V+     P+  
Sbjct: 190 IYELPPFAPGGDFSEK-------------------------TNEKRTPKVIQSLYHPNSL 224

Query: 417 TVASAAADETLRFWNV 432
            + +   D +L FW+ 
Sbjct: 225 HIITIHEDNSLVFWDA 240

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 79.9 bits (196), Expect = 4e-16
 Identities = 21/223 (9%), Positives = 63/223 (28%), Gaps = 30/223 (13%)

Query: 157 IALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR 216
           +A+ +             E+V   ++   +  + +      + I   +  V +    + +
Sbjct: 32  LAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDT-VYVLSLYSQK 90

Query: 217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH----------IVETYR 264
            L T+      ++ S+    +   +  G  +G +I  D+                     
Sbjct: 91  VLTTV--FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA 148

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW------------LHRLE 312
                +  ++W+           + +   +            +                E
Sbjct: 149 ARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNE 208

Query: 313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355
           + T  V    + P   +++       D  + FW+ ++G  + +
Sbjct: 209 KRTPKVIQSLYHPNSLHIIT---IHEDNSLVFWDANSGHMIMA 248

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 72.2 bits (176), Expect = 1e-13
 Identities = 20/177 (11%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
           G + +     +  +   LA       +HI+ +           +    E  SA+K + + 
Sbjct: 15  GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-------QVEVVIKLEDRSAIKEMRFV 67

Query: 325 PFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL--SSHG--- 379
                L+          +   + ++   L +V    ++ ++  + +   +L    +G   
Sbjct: 68  KGIY-LVV---INAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMI 123

Query: 380 ---FTQNQLTLWKYPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
                ++QL+ +K  ++ K +   +   S ++ +  +P        + +     +++
Sbjct: 124 VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSL 180

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 48/384 (12%), Positives = 115/384 (29%), Gaps = 25/384 (6%)

Query: 77  VFNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAP 136
            ++ N   ++  +    T +  +P+      S++++ + +K+     + P+ +   +   
Sbjct: 237 FWDANSGHMIMARTVFETEIN-VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295

Query: 137 DLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGR 196
            +      +L           ++ S   + +         +     N P+ ++   P   
Sbjct: 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS 355

Query: 197 HIAIGLNNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWNNHILTT---GGMDGL 247
               G +N  + L           L               +L+W   + TT     +   
Sbjct: 356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK 415

Query: 248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS---MASSNSV 304
           +    +    +     +G  +       +  G    +G ++  + I+D S   +  + S 
Sbjct: 416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASF 475

Query: 305 TQWLHRL--EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----CLNSVDT 358
              L R   +    AV  I++   ++  LA     GD  +  +  +          S D 
Sbjct: 476 EVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 534

Query: 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
                    N     L+         +     PS      +  +  +   +  S  G  V
Sbjct: 535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA----VHANKGKTSAINNSNIGF-V 589

Query: 419 ASAAADETLRFWNVFGAPQVISKS 442
             A A  +L   +  G   +  ++
Sbjct: 590 GIAYAAGSLMLIDRRGPAIIYMEN 613

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 34/310 (10%), Positives = 71/310 (22%), Gaps = 36/310 (11%)

Query: 151 SSNVLAIALGSTVYLWDASDGTT----------------SELVTVDDENGPVTSVNWAPD 194
               + I+       +   +                       T +     V    + P+
Sbjct: 163 DIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222

Query: 195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254
             HI     +  +  WD+ +   +                     +T       +     
Sbjct: 223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE 282

Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
                      H     G   S +   L      ++          +N     +  L   
Sbjct: 283 NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PT 341

Query: 315 TSAVKAIAWCPFQSNLLATGGGG-------GDRCIKFWNTHTGACLNSVDTGSQVCALLW 367
              +  I   P QS   A            G+  I+     +G   +      Q  + L 
Sbjct: 342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL- 400

Query: 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAE-----LSGHTSRVLFMAQSPDGCTVASAA 422
               R L ++         LW     +  A+     L G          +  G    +  
Sbjct: 401 ----RPLATTSMAASVPNKLW--LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH 454

Query: 423 ADETLRFWNV 432
           ++ ++R ++ 
Sbjct: 455 SNGSVRIYDA 464

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 19/177 (10%)

Query: 162 TVYLWDASDGTTSELVTV---------DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS 212
           +V ++DAS G   +  +            +   V  +++A +   +A+ +    V L+  
Sbjct: 458 SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY 517

Query: 213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY------RGH 266
             N+        +R   G L  N    +    +G++++   R    + + +        +
Sbjct: 518 EVNQFYSVE---NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574

Query: 267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
             +   +  S  G  +        L + DR   +   +          ++ V  I +
Sbjct: 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEF 630

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 90.1 bits (223), Expect = 1e-19
 Identities = 23/303 (7%), Positives = 68/303 (22%), Gaps = 73/303 (24%)

Query: 153 NVLAIALGSTVYLWDASDGTTSELVTVDDE--------------NGPVTSVNWAPDGRHI 198
           +++   + + +  +        E      +                   S     + + +
Sbjct: 17  SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76

Query: 199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLI----INN 251
                +   +      +  L        S + +L      + ++     D  +    ++ 
Sbjct: 77  KSNKGDSIKRTAAKVPSPGLGA--PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDK 134

Query: 252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL 311
             +    + +     ++    +  +     +        ++  D  + S          +
Sbjct: 135 TSKNVLKLRKR-FCFSKRPNAISIAEDDTTVIIADKFGDVYSID--INSIPEEKFTQEPI 191

Query: 312 EEHTSAVKAIAWCPFQSN--LLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK 369
             H S +  +           + T     D  IK  +      ++               
Sbjct: 192 LGHVSMLTDVHLIKDSDGHQFIIT--SDRDEHIKISHYPQCFIVDKW------------- 236

Query: 370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF 429
                                        L GH   V  +    D   + SA  D+ +  
Sbjct: 237 -----------------------------LFGHKHFVSSICCGKDY-LLLSAGGDDKIFA 266

Query: 430 WNV 432
           W+ 
Sbjct: 267 WDW 269

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 79.7 bits (196), Expect = 3e-16
 Identities = 24/258 (9%), Positives = 68/258 (26%), Gaps = 46/258 (17%)

Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGM 244
           P+ ++  + DG  +   + NC +  +   +        G        +            
Sbjct: 6   PLQNLLTSRDGSLVFAIIKNC-ILSFKYQSPNHWEFA-GKWSDDFDKIQ----------- 52

Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV 304
                                  Q+    +     ++L S   D++     +       V
Sbjct: 53  --------------ESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAK-------V 91

Query: 305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-----CLNSVDTG 359
                      S ++ +     +S L+A      D+ +  ++    +             
Sbjct: 92  PSPGLGAPPIYSYIRNLRLTSDESRLIAC--ADSDKSLLVFDVDKTSKNVLKLRKRFCFS 149

Query: 360 SQVCALLWNKNERELLS--SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC- 416
            +  A+   +++  ++     G   +               + GH S +  +    D   
Sbjct: 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDG 209

Query: 417 --TVASAAADETLRFWNV 432
              + ++  DE ++  + 
Sbjct: 210 HQFIITSDRDEHIKISHY 227

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 84.0 bits (207), Expect = 1e-17
 Identities = 38/343 (11%), Positives = 101/343 (29%), Gaps = 39/343 (11%)

Query: 141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSE--LVTVDDENGPVTSVNWAP--DGR 196
              + +      N +         ++        E   +   +    +  + W P  +  
Sbjct: 49  GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108

Query: 197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVR 256
              +  N+  ++LW   + R  R      +   G       +  T     +    D+ V 
Sbjct: 109 QFLLSTNDKTIKLWK-ISERDKRPEGYNLKEEDGRYRDPTTV--TTLRVPVFRPMDLMVE 165

Query: 257 DHIVETY-RGHNQEVCGLKWSASGQQLASGGNDNLLHIWD--RSMASSNSVTQWLHRLEE 313
                 +   H   +  +  ++  +   S  +D  +++W    +  S N V      +EE
Sbjct: 166 ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEE 224

Query: 314 HTSAVKAIAWCPFQSNLLATGGGGG-------------DRCIKFWNTHTGACLNSVDTG- 359
            T  + A  + P   N        G             DR  K +         S  +  
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284

Query: 360 -SQVCALLWNKNERELLSS---------HGFTQNQLTLWKYPSMVKMAELSGHTSRVLF- 408
            S +  + ++ + R +++                 +  ++    ++    S + +  +F 
Sbjct: 285 ISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344

Query: 409 ---MAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKPNR 448
                 +     V + + +   R ++      +  +++ + N+
Sbjct: 345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK 387

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 72.1 bits (176), Expect = 8e-14
 Identities = 38/338 (11%), Positives = 89/338 (26%), Gaps = 69/338 (20%)

Query: 155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA 214
           +A A G     W  S    +    V + +  +++V +   G  +A G    +V ++    
Sbjct: 1   MAGAGGGNDIQWCFSQVKGAVDDDVAEAD-IISTVEFNHSGELLATGDKGGRVVIFQQEQ 59

Query: 215 NRQLRTLRGGHRS----------------------RVGSLAW----NNHILTTGGMDGLI 248
             ++++   G  +                      ++  + W    N         D  I
Sbjct: 60  ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119

Query: 249 INNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ 306
               +  RD   E Y  +  +          + +       D ++    R +        
Sbjct: 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI-------- 171

Query: 307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-ACLNSVDTGSQ---- 361
                  HT  + +I+          +     D  I  W+        N VD        
Sbjct: 172 ---FANAHTYHINSISINS-DYETYLS---ADDLRINLWHLEITDRSFNIVDIKPANMEE 224

Query: 362 ----VCALLWNKNERELLSS---------------HGFTQNQLTLWKYPSMVKMAELSGH 402
               + A  ++ N                          ++     +       +  S  
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284

Query: 403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS 440
            S +  +  S  G  + +     +++ W++    + + 
Sbjct: 285 ISSISDVKFSHSGRYMMT-RDYLSVKVWDLNMENRPVE 321

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 72.1 bits (176), Expect = 9e-14
 Identities = 30/291 (10%), Positives = 78/291 (26%), Gaps = 45/291 (15%)

Query: 166 WDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-- 223
            D     +   +  +     + S++   D        ++ ++ LW      +   +    
Sbjct: 160 MDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK 218

Query: 224 -----GHRSRVGSLAWNN---HILTTGGMDGLIINNDVR---------------VRDHIV 260
                     + +  ++    +        G I   D+R                     
Sbjct: 219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNR 278

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEEHTSAVK 319
             +      +  +K+S SG+ + +  +   + +WD +M +    T  +H  L     ++ 
Sbjct: 279 SFFSEIISSISDVKFSHSGRYMMTR-DYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337

Query: 320 AIAW------CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373
                     C +  +      G  +   + ++ +T   +    +          K  + 
Sbjct: 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV 397

Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD 424
             S            K        +      ++L  A  P    +A A  +
Sbjct: 398 CASG-----------KRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN 437

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 19/153 (12%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT--SVNWAPDGRH 197
           D   + + D              V  +   +   S+L ++ + +         W      
Sbjct: 304 DYLSVKVWDLNME-------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356

Query: 198 IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD 257
           +  G  N   +++D    R + TL     +           +   G          R +D
Sbjct: 357 VMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGK---------RKKD 406

Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290
            I       N+++    W      +A    +NL
Sbjct: 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNNL 439

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 83.8 bits (206), Expect = 2e-17
 Identities = 29/279 (10%), Positives = 72/279 (25%), Gaps = 48/279 (17%)

Query: 163 VYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRH------IAIGLNNCQVQLWDSTANR 216
           ++  + S     ++ T+    G V  + W            ++       +   +   N 
Sbjct: 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246

Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS 276
               +                                ++ +    T    +  +    + 
Sbjct: 247 TDVHVF-------------------------------KMCEKPSLTLSLADSLITTFDFL 275

Query: 277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336
            S   +  G  +  +  +D +     S        + H S + +++              
Sbjct: 276 -SPTTVVCGFKNGFVAEFDLTDPEVPS-----FYDQVHDSYILSVSTAYSDFEDTVVSTV 329

Query: 337 GGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM 393
             D     +N    A      S   GS +  +++       + S G   + L      + 
Sbjct: 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--SSLRAVPSRAA 387

Query: 394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             +  L    + +  +  S     V + +AD +L   N 
Sbjct: 388 FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 71.8 bits (175), Expect = 1e-13
 Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 14/237 (5%)

Query: 107 ASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLW 166
                +   A+ +     +P   ++  D+   +        D+  + V  +A+    Y++
Sbjct: 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSY--ILSVSTAYSDFEDTVVSTVAVDGYFYIF 338

Query: 167 DASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR 226
           +  D  T++          +  V + P             ++   S A   +  L     
Sbjct: 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRE 397

Query: 227 SRVGSLAWNNH--ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS 284
           + + ++  +    ++  G  DG +I  +   R  ++   +  +     L+      +   
Sbjct: 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRL----WKWDY 451

Query: 285 GGNDNLLHIWDRSMASSNSVTQWL-HRLEEHTSAVKAIAWCPFQ--SNLLATGGGGG 338
              D+   I         +V      +++ H   +    W          A     G
Sbjct: 452 SIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG 508

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 80.8 bits (199), Expect = 6e-17
 Identities = 40/305 (13%), Positives = 90/305 (29%), Gaps = 40/305 (13%)

Query: 155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNCQVQLWDST 213
           L ++   +  +++           +  E   ++ V       ++A        V +WD  
Sbjct: 34  LILSTLKSFEIYNVHPVAH----IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV 89

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
             + +  ++    + V  L  +   +     D + +         I       +    G+
Sbjct: 90  KKQDVSRIK--VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI-----TDDIRFGGV 142

Query: 274 KWSASGQQLASGGNDNL-LHIWDRSMASSNSVT----------QWLHRLEEHTSAVKAIA 322
              ++G  + S   +   +HI     + S +                 ++ HT+ +K + 
Sbjct: 143 CEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR 202

Query: 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS---QVCALLWNKNERELLSS-- 377
               +S+++AT    G   I+ + T  G  +     G     V  + W+ +  +L     
Sbjct: 203 LNR-KSDMVATCSQDG-TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260

Query: 378 ----HGF---TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ---SPDGCTVASAAADETL 427
               H F                + M       S   F         GC +A  +    +
Sbjct: 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320

Query: 428 RFWNV 432
             W  
Sbjct: 321 VVWPH 325

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 74.3 bits (182), Expect = 1e-14
 Identities = 36/280 (12%), Positives = 91/280 (32%), Gaps = 37/280 (13%)

Query: 172 TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS 231
           T + +V  +  + PVT   +  D   + +       ++++      + +    H S+V  
Sbjct: 8   TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRM 66

Query: 232 LAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL 291
           L   N++    G+  ++   D   +  +       +  V  L  S   ++       +++
Sbjct: 67  LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI--KVDAPVKDLFLS---REFIVVSYGDVI 121

Query: 292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA 351
            ++            + +  +  T  ++    C F + LL          I      +  
Sbjct: 122 SVFK-----------FGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSG 170

Query: 352 CLNSVDTG-----------------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV 394
              + D G                 + +  +  N+    ++++       + ++K    V
Sbjct: 171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGV 229

Query: 395 KMAELSGHT--SRVLFMAQSPDGCTVASAAADETLRFWNV 432
            + E       + V+ M  S DG  +A  +   TL  + +
Sbjct: 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 27/221 (12%), Positives = 60/221 (27%), Gaps = 28/221 (12%)

Query: 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNW---------------APDG 195
           S   + ++ G  + ++   +     +       G     N                    
Sbjct: 109 SREFIVVSYGDVISVFKFGNPWK-RITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQ 167

Query: 196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN--HILTTGGMDGLIINN-D 252
              +    +  V         +   ++  H + +  +  N    ++ T   DG II    
Sbjct: 168 SSGSATTQDQGV--QQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224

Query: 253 VRVRDHIVETYRG-HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL-HR 310
                 + E  RG    +V  +KWS  G +LA   +   LH+++      N         
Sbjct: 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGG----GGGDRCIKFWNT 347
             ++  +  ++       +    G           +  W  
Sbjct: 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH 325

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 19/155 (12%)

Query: 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQL 218
                +   +       V +     P+  V        +A    +   ++++ +     +
Sbjct: 174 TQDQGVQQKAILGK--GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231

Query: 219 RTLRGG-HRSRVGSLAWN--NHILTTGGMDGLI----INNDVRVRDHIVE---TYRGHNQ 268
           R  R G  R+ V  + W+     L        +    I ND   + H ++     +    
Sbjct: 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQS 291

Query: 269 EV------CGLKWSASGQQLASGGNDNLLHIWDRS 297
           E         +     G ++A     +L+ +W  +
Sbjct: 292 EWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 76.9 bits (188), Expect = 2e-15
 Identities = 29/240 (12%), Positives = 64/240 (26%), Gaps = 32/240 (13%)

Query: 131 RTLDAPDLVDDYYLNLLDWGSSN-VLAIALGSTVYLWDASD-------------GTTSEL 176
           R  D+P+ +     +LL   +   ++     S + ++   +                   
Sbjct: 26  RIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQ 85

Query: 177 VTVDDENGPVTSVNWAPDGRHIAIGL----NNCQVQLWDSTANRQLRTLRG--------- 223
             +     P+  +  + D   ++  +        +  +D          +          
Sbjct: 86  GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL 145

Query: 224 -GHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG 279
                 V  + WN     ++     DG I    V      V         V  + WS  G
Sbjct: 146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT-ETVKVCATLPSTVAVTSVCWSPKG 204

Query: 280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339
           +QLA G  +  +  +  ++     +        +H   V  + W       +      G 
Sbjct: 205 KQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 59.2 bits (142), Expect = 1e-09
 Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 14/186 (7%)

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
           GL ++     L      NLL         +  V +    L      +  +A       L 
Sbjct: 49  GLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLS 108

Query: 332 A-TGGGGGDRCIKFWNTHTGACLN------------SVDTGSQVCALLWNKNERELLSSH 378
           A          I F++  T +                 D G  V  + WN     +++  
Sbjct: 109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV- 167

Query: 379 GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV 438
                 + + +    VK+      T  V  +  SP G  +A    + T+  +      + 
Sbjct: 168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227

Query: 439 ISKSAP 444
           +    P
Sbjct: 228 VIPCPP 233

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 33/193 (17%)

Query: 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELV---TVDDENGPVTSVNWAPDGRHIAIGLN 203
           L W S +       + + +++A  G +S  +   T D+    +   + +PDG+ I +  N
Sbjct: 22  LRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81

Query: 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIV 260
             +      TA+  +  L          +            G     + NND+ V+    
Sbjct: 82  YVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP- 140

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
                          +    ++   G ++++          N +T W++  EE  SA  A
Sbjct: 141 ---------------NLPSYRITWTGKEDII---------YNGITDWVYE-EEVFSAYSA 175

Query: 321 IAWCPFQSNLLAT 333
           + W P     LA 
Sbjct: 176 LWWSP-NGTFLAY 187

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Length = 337

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 40/307 (13%), Positives = 82/307 (26%), Gaps = 46/307 (14%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQ-VQLWDSTANRQLRT 220
            + + D       +++T+ D          AP GR     +N  + +   D      L  
Sbjct: 12  KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71

Query: 221 LRGGHRSRVG-------------SLAWNNHILTTGGMDGLIINNDVRVRD----HIVETY 263
           +                      +LA     +        +    V + D       + +
Sbjct: 72  IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131

Query: 264 RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW 323
               Q +  L W+  G +L   G D  LH+ D     + ++ +         S       
Sbjct: 132 EAPRQ-ITMLAWARDGSKLYGLGRD--LHVMD---PEAGTLVEDK----PIQSWEAETYA 181

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGA----------CLNSVDTGSQVCALLWNKNERE 373
            P    +       G     F+                 L ++D  +   A+   +    
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHT--------SRVLFMAQSPDGCTVASAAADE 425
              S      +   +   ++++  +L  +              +  S DG TV    A  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 426 TLRFWNV 432
            L  ++ 
Sbjct: 302 DLAAYDA 308

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 27/132 (20%)

Query: 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
           +  L   LG  +YL+D      + +  +    G  T    +P G  ++         LW 
Sbjct: 120 AQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR---NLW- 175

Query: 212 STANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
                 +  L  G + +          LT  G    I N    + + + +     +    
Sbjct: 176 ------VIDLASGRQMQ----------LTADGSTT-IGN---GIAEFVADEEMDRHT--- 212

Query: 272 GLKWSASGQQLA 283
           G  W+     +A
Sbjct: 213 GYWWAPDDSAIA 224

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 31/189 (16%)

Query: 149 WGSSNVLAIALGSTVYLWDASDGTTSELVTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQV 207
                 L  +  + + L++   G +  +++    ++   ++   +PD + + +  +  ++
Sbjct: 24  ISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL 83

Query: 208 QLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT---TGGMDGLIINNDVRVRDHIVETYR 264
             +  TA   +  L  G   R   L      L     G     +  N++ ++        
Sbjct: 84  WRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP----- 138

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
                           Q+   G +N +          N +  W++  EE  +   A+ W 
Sbjct: 139 -----------GDPPFQITFNGRENKI---------FNGIPDWVYE-EEMLATKYALWWS 177

Query: 325 PFQSNLLAT 333
           P     LA 
Sbjct: 178 P-NGKFLAY 185

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 38/260 (14%), Positives = 77/260 (29%), Gaps = 66/260 (25%)

Query: 93  PTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLL----D 148
           P  + +I E      +   + +    +K    I +SS   L+ P      +  L      
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLE-PAEYRKMFDRLSVFPPS 384

Query: 149 -WGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVN-WAPDGRHIAIGLNNCQ 206
               + +L++       +W     +   +V         + V     +     I + +  
Sbjct: 385 AHIPTILLSL-------IWFDVIKSDVMVVVNKLHK--YSLVEKQPKEST---ISIPSIY 432

Query: 207 VQLWDSTANRQLRTLRGGHRSRVGS----LAWNNHILTTGGMDGLIINNDVRVRDHIVET 262
           ++L           L   HRS V        +++  L    +D    ++      H+   
Sbjct: 433 LEL--KVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNI 484

Query: 263 YRGHN---------------QEVC--GLKWSASGQQLASGGNDNLL--------HIWDRS 297
                               Q++      W+ASG  L      N L        +I D  
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL------NTLQQLKFYKPYICDND 538

Query: 298 MASS---NSVTQWLHRLEEH 314
                  N++  +L ++EE+
Sbjct: 539 PKYERLVNAILDFLPKIEEN 558

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 29/122 (23%)

Query: 164 YLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG 223
            L     G    L   +  N  +    W P G+ +     N    ++            G
Sbjct: 94  VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN---NIY-------YCAHVG 143

Query: 224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQEVCGLKWSASGQQ 281
               R          + + G +G+I N    + D +   E  + H        WS  G +
Sbjct: 144 KQAIR----------VVSTGKEGVIYNG---LSDWLYEEEILKTHI----AHWWSPDGTR 186

Query: 282 LA 283
           LA
Sbjct: 187 LA 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.3
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.08
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.06
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.04
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.0
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.87
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.86
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.86
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.82
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.68
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.68
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.65
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.59
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.57
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.52
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.49
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.44
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.39
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.36
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.33
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.29
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.19
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.11
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.08
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.08
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.03
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.03
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.02
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.01
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.97
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.88
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.79
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.78
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.77
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.66
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.52
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.5
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.49
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.46
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.43
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.41
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.39
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.33
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.22
3ott_A	758	Two-component system sensor histidine kinase; beta	97.06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.04
3ott_A	758	Two-component system sensor histidine kinase; beta	97.03
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.99
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.91
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.87
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.81
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.74
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.68
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.64
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.49
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.46
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.22
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.21
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.06
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.64
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.26
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.04
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.4
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.27
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.6
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.5
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	86.37
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	85.59
2rqw_B	26	24-meric peptide from serine/threonine-protein KI	84.19
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	82.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.17

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7e-67  Score=517.07  Aligned_cols=398  Identities=45%  Similarity=0.828  Sum_probs=297.6

Q ss_pred             cCCCCCCccccccceecCCCCccccccccCCCccHHHHHHHHHHHhC---CCCCceeeccCCCCCCCcCCCCcCCCcccC
Q 012679           33 PNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFN---MNRTRILAFKNKPPTPVELIPEMHSSSASA  109 (458)
Q Consensus        33 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~  109 (458)
                      |+|++||||+|+|++++++...+      ..++.+++|++++++.+.   .++.|||+|+++||.++....+.....++.
T Consensus         2 p~r~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~   75 (420)
T 4gga_A            2 PHRSAAQMEVASFLLSKENQPEN------SQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQ   75 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccCchhhhhccccccCCccc------ccCcchHHHHHHHHhhccccccccceEEeccCCCCCCCcccccCcceeccc
Confidence            99999999999999987655433      246778899999998876   346799999999887766655554444432


Q ss_pred             CccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEE
Q 012679          110 SSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSV  189 (458)
Q Consensus       110 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v  189 (458)
                      .  ....++++..|+||..|+++|+||++.+|||+|+++|++++++|+|.|++|+|||+.+|+...+..+.+|...|++|
T Consensus        76 ~--~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv  153 (420)
T 4gga_A           76 K--ATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSV  153 (420)
T ss_dssp             ------------CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEE
T ss_pred             c--cCCCCccCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEE
Confidence            2  22345567789999999999999999999999999999999999999999999999999998888888899999999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc
Q 012679          190 NWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE  269 (458)
Q Consensus       190 ~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~  269 (458)
                      +|+|+|++||+|+.||.|+|||+.+++.+..+.+ |...+.+++|++.+|++|+.|+.+.+||.......+..+.+|...
T Consensus       154 ~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             EECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence            9999999999999999999999999999999987 999999999999999999999999999999888878889999999


Q ss_pred             eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          270 VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      ++.+.|+|+++++++++.|+.|++||...+....  ..+.....|...|.+++|+|++..++++++|+.|++|++||+.+
T Consensus       233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~--~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW--VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCS--CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             eeeeeecCCCCeeeeeeccccceEEeeccccccc--eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            9999999999999999999999999998765422  22566778999999999999999999998888999999999999


Q ss_pred             CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679          350 GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF  429 (458)
Q Consensus       350 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i  429 (458)
                      ++++..+..+..++++.|+++++.+++++|+.|+.|+|||+++++++.++.+|.+.|++++|+|||++|+||+.||+|+|
T Consensus       311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            99999999999999999999999999998989999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCccccc
Q 012679          430 WNVFGAPQVISK  441 (458)
Q Consensus       430 W~~~~~~~~~~~  441 (458)
                      ||+++..+..+.
T Consensus       391 Wdv~~~~~~~~~  402 (420)
T 4gga_A          391 WRCFELDPARRR  402 (420)
T ss_dssp             ECCSCSSCC---
T ss_pred             EECCCCCccchh
Confidence            999987655443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.4e-59  Score=457.67  Aligned_cols=385  Identities=44%  Similarity=0.820  Sum_probs=297.9

Q ss_pred             ceeccCCCCCCccccccceecCCCCccccccccCCCccHHHHHHHHHHHhCCC-CCceeeccCCCCCCCcCCCCcCCCcc
Q 012679           29 DRFIPNRSAMDFDYAHYMVTEGRKDKENNQAMSVCSPSKEAYRKQLAEVFNMN-RTRILAFKNKPPTPVELIPEMHSSSA  107 (458)
Q Consensus        29 dr~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~~~~~~~~~~~~~~~~~~~~  107 (458)
                      |||||+|+  |||.|+|++++++              ...+|++.|+++++.+ +.|||.|...||....  +......+
T Consensus         1 ~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~--~~~~~~~~   62 (401)
T 4aez_A            1 DRFIPSRP--NTANAFVNSISSD--------------VPFDYSESVAEACGFDLNTRVLAFKLDAPEAKK--PVDLRTQH   62 (401)
T ss_dssp             -----------------------------------------------------CCEEEEEECSCCCCCCC--CCC-----
T ss_pred             CCcCCCch--hhhHHHHhhcCCc--------------chHHHHHHHHHHcCCCccCcEEeeCCCCCCCcC--cccchhhc
Confidence            89999999  9999999986431              1346999999999854 7899999998876432  22222222


Q ss_pred             cCCccccccccCCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEE
Q 012679          108 SASSSVQQAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVT  187 (458)
Q Consensus       108 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~  187 (458)
                      ..   .......+..|.+|..|++++++++..+++++++++|+++.+++++.|+.|++||+.+++....... .|...|+
T Consensus        63 ~~---~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~  138 (401)
T 4aez_A           63 NR---PQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET-DESTYVA  138 (401)
T ss_dssp             ---------------CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEE
T ss_pred             cc---ccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEE
Confidence            10   0111113456889999999999999999999999999999999999999999999999987555443 3788999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc
Q 012679          188 SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN  267 (458)
Q Consensus       188 ~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~  267 (458)
                      +++|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+++|++++|++|+.||.|++||++........+.+|.
T Consensus       139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  217 (401)
T 4aez_A          139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG-HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS  217 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC-CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCC
Confidence            999999999999999999999999999999999986 9999999999999999999999999999997776788899999


Q ss_pred             cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      ..|++++|+|++++|++|+.||.|++||++....      +..+..|...|.+++|+|++..++++++|+.|+.|++||+
T Consensus       218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~  291 (401)
T 4aez_A          218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA  291 (401)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence            9999999999999999999999999999998665      7778889999999999999999999987778999999999


Q ss_pred             CCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          348 HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       348 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      .+++++..+.++..+.+++|+|+++++++++|+.+|.|++||+.+++  ....+.+|...|.+++|+|+|.+|++++.||
T Consensus       292 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          292 ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             TTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            99999999999999999999999999999888899999999999854  4445779999999999999999999999999


Q ss_pred             cEEEEecCCCCcccccC
Q 012679          426 TLRFWNVFGAPQVISKS  442 (458)
Q Consensus       426 ~i~iW~~~~~~~~~~~~  442 (458)
                      .|++|++.+++...+..
T Consensus       372 ~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          372 NLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEEEEECCC--------
T ss_pred             cEEEEECCCCccccccc
Confidence            99999999887765543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.6e-52  Score=394.57  Aligned_cols=315  Identities=53%  Similarity=0.975  Sum_probs=291.7

Q ss_pred             CCCCCCCCCCCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE
Q 012679          119 NKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI  198 (458)
Q Consensus       119 ~~~~~~i~~~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l  198 (458)
                      +|..|.||..|+|+||||++.+|||+|+++|++++++|++.|++|+|||+.+++......+.+|...|++++|+|+|++|
T Consensus         3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l   82 (318)
T 4ggc_A            3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL   82 (318)
T ss_dssp             ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred             CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence            35568999999999999999999999999999999999999999999999999987777888899999999999999999


Q ss_pred             EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679          199 AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS  278 (458)
Q Consensus       199 a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  278 (458)
                      |+|+.||.|++||+.+++.+..+.+ |...+.++.+++..+++|+.++.+.+|+.......+..+.+|...+..+.++++
T Consensus        83 ~sgs~Dg~v~iw~~~~~~~~~~~~~-h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           83 AVGTSSAEVQLWDVQQQKRLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEECCCcEEEeecCCceeEEEecC-ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence            9999999999999999999999987 999999999999999999999999999999888778889999999999999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      +++|++++.||.|++||+++++....  .......|...|.+++++|++..++.+++|+.++.|++||............
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~  239 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA  239 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBSC--CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEecCcceeEEECCCCccccc--ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc
Confidence            99999999999999999987654221  2455567888999999999999988777777999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ...+..+.|++++..+++++|..|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+.||+|+|||+++.+
T Consensus       240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999999999999999999888899999999999999999999999999999999999999999999999999998654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-44  Score=354.86  Aligned_cols=278  Identities=23%  Similarity=0.401  Sum_probs=253.4

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..++++.|++  ..+++++.|++|+|||+.+++.  ...+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+++.+.
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~  186 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR  186 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence            4688899987  4588888999999999999887  67788999999999999999999999999999999999999999


Q ss_pred             EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.+ |...|.+++|+  +.+|++|+.|+.|++||++++.. +..+.+|...|.++.|+|++.+|++|+.|+.|++||+.
T Consensus       187 ~~~~-h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~  264 (410)
T 1vyh_C          187 TMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  264 (410)
T ss_dssp             CCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            9887 99999999994  68999999999999999998764 67888999999999999999999999999999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCC-------------------CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-------------------SNLLATGGGGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-------------------~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      +...      ...+..|...|.+++|+|++                   ..++++|+  .|+.|++||++++.++..+..
T Consensus       265 ~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~  336 (410)
T 1vyh_C          265 TKEC------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVG  336 (410)
T ss_dssp             TCCE------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred             CCce------eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEEC
Confidence            8765      67888999999999999963                   34777776  999999999999999988864


Q ss_pred             -CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          359 -GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       359 -~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                       ...|.+++|+|++++|++  |..|+.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||+|++|++.
T Consensus       337 h~~~v~~v~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          337 HDNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CSSCEEEEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence             567999999999999998  5589999999999999999999999999999999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=335.22  Aligned_cols=280  Identities=19%  Similarity=0.334  Sum_probs=252.8

Q ss_pred             CccccceeeccCC------CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC
Q 012679          140 DDYYLNLLDWGSS------NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST  213 (458)
Q Consensus       140 ~d~~~~~~~~~~~------~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~  213 (458)
                      .+-.+.+++|+++      .+++++.|++|+||++.+++......+.+|...|.+++|++++.++++|+.||.|++||+.
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~  110 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE  110 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            3446888999752      5889999999999999888766677889999999999999999999999999999999999


Q ss_pred             CceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679          214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                      +++.+..+.. |...+.+++|  ++.+|++|+.||.|++||++.+.. ...+..|...|.+++|+|++++|++|+.||.|
T Consensus       111 ~~~~~~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          111 NGKQIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             TTEEEEEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCEEEEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence            9999999887 8888999999  478999999999999999998775 56677889999999999999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKN  370 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~  370 (458)
                      ++||++++..      +..+.+|...|.+++|+|++ .+|++++  .|+.|++||+++++++..+.. ...|.+++|+|+
T Consensus       189 ~iwd~~~~~~------~~~~~~h~~~v~~l~~spd~-~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          189 NIFDIATGKL------LHTLEGHAMPIRSLTFSPDS-QLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EEEETTTTEE------EEEECCCSSCCCEEEECTTS-CEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEECCCCcE------EEEEcccCCceeEEEEcCCC-CEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            9999988765      78888999999999999975 4666766  899999999999999888864 567999999999


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      +.+|++  |..|+.|+|||+.+++.+.++.+|...|.+++|+|+|.+|++++.||+|++||+
T Consensus       260 ~~~l~s--~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          260 DTHFVS--SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             SSEEEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCEEEE--EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            999988  448999999999999999999999999999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.4e-43  Score=334.35  Aligned_cols=274  Identities=21%  Similarity=0.394  Sum_probs=245.5

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR----  216 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~----  216 (458)
                      .+.++.|++  ..+++++.|+.|++||+.+++.  +..+..|...|.+++|+|+|++|++|+.||.|++||+.+.+    
T Consensus        57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~  134 (340)
T 1got_B           57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK--VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc--ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence            577889987  3588899999999999998876  66778899999999999999999999999999999998753    


Q ss_pred             eeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          217 QLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      ....+.+ |...|.++.|. +..+++++.|+.|++||++++.. +..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus       135 ~~~~~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          135 VSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEEEecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            4455665 99999999994 56799999999999999987764 678889999999999999999999999999999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNER  372 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~  372 (458)
                      ++.+..      ...+.+|...|.+++|+|++ .++++++  .|++|++||+++++.+..+.+.   ..|.+++|+|+++
T Consensus       213 ~~~~~~------~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          213 VREGMC------RQTFTGHESDINAICFFPNG-NAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTTCSE------EEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CCCCee------EEEEcCCcCCEEEEEEcCCC-CEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence            988765      77888999999999999975 4566665  8999999999999988877654   3699999999999


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ++++  |..|+.|++||+.+++.+..+.+|...|.+++|+|+|.+|++|+.||+|+|||
T Consensus       284 ~l~~--g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          284 LLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEE--ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9998  55899999999999999999999999999999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-40  Score=316.51  Aligned_cols=279  Identities=19%  Similarity=0.320  Sum_probs=243.7

Q ss_pred             cccceeeccC---CCeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          142 YYLNLLDWGS---SNVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ..+++++|++   +.+++++.|++|++|++.....   ..+..+.+|...|.+++|+|+|++|++|+.||+|+|||+.++
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~   97 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG   97 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            3577888876   3488899999999999864321   346678899999999999999999999999999999999999


Q ss_pred             eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC------CCEEEEEEC
Q 012679          216 RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS------GQQLASGGN  287 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd------~~~l~sg~~  287 (458)
                      +.+..+.+ |...|.+++|+  +.+|++|+.|+.|++||++..  .+..+.+|...|.++.|+|.      +..|++++.
T Consensus        98 ~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~  174 (319)
T 3frx_A           98 ETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN  174 (319)
T ss_dssp             EEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred             CeeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence            99999987 99999999995  689999999999999999743  46788899999999999985      458999999


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679          288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW  367 (458)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~  367 (458)
                      |+.|++||++....      ...+.+|...|.+++|+|++. ++++++  .|+.|++||+.+++++..+.....+.+++|
T Consensus       175 d~~i~~wd~~~~~~------~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  245 (319)
T 3frx_A          175 DKMVKAWNLNQFQI------EADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAF  245 (319)
T ss_dssp             TSCEEEEETTTTEE------EEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEE
T ss_pred             CCEEEEEECCcchh------heeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEE
Confidence            99999999987654      677889999999999999754 566665  899999999999999999998899999999


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--------HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--------h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +|++..++++.   ++.+++|++.....+..+..        |...+.+++|+|||++|++|+.||.|++||+.+.
T Consensus       246 sp~~~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          246 SPNRYWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CSSSSEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             cCCCCEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            99999988753   45699999998887776643        4567999999999999999999999999998653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.9e-41  Score=323.16  Aligned_cols=274  Identities=21%  Similarity=0.386  Sum_probs=242.5

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-----
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-----  215 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-----  215 (458)
                      .+++++|++  ..+++++.|++|++||..+++.  ...+..|...|.+++|+|+|.+|++|+.|+.+++|++...     
T Consensus        66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~--~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~  143 (354)
T 2pbi_B           66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK--EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM  143 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred             eEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc--ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence            588899987  4589999999999999998876  5556678889999999999999999999999999998643     


Q ss_pred             -eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC--CCCEEEEEECCCc
Q 012679          216 -RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA--SGQQLASGGNDNL  290 (458)
Q Consensus       216 -~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~  290 (458)
                       .....+.. |...|.+++|.  +..|++|+.||+|++||++++.. +..+.+|...|.+++|+|  ++++|++|+.||.
T Consensus       144 ~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          144 AAKKKSVAM-HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             GGGCEEEEE-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cccceeeec-cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence             23455555 99999999994  67999999999999999998764 678899999999999988  5789999999999


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEE
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLW  367 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~  367 (458)
                      |++||++++..      +..+..|...|.+++|+|++ .++++++  .|++|++||+++++.+..+...   ..+.+++|
T Consensus       222 v~~wd~~~~~~------~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          222 AMVWDMRSGQC------VQAFETHESDVNSVRYYPSG-DAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEEETTTCCE------EEEECCCSSCEEEEEECTTS-SEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEEECCCCcE------EEEecCCCCCeEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            99999998765      77888999999999999975 5666666  8999999999999887776543   36889999


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      +|++.++++  |+.|+.|++||+.+++.+..+.+|...|++++|+|+|++|++|+.||+|++|+
T Consensus       293 s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          293 SLSGRLLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eCCCCEEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999998  55899999999999999999999999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-41  Score=331.34  Aligned_cols=282  Identities=20%  Similarity=0.383  Sum_probs=243.6

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---  216 (458)
                      ..+++++|++  ..+++++.|++|+|||+.+++.  ...+..|...|.+++|+|+|++|++|+.|+.|++||+.+..   
T Consensus        67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~  144 (380)
T 3iz6_a           67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK--THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD  144 (380)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence            4588899987  4699999999999999998876  67778899999999999999999999999999999987532   


Q ss_pred             ----eeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEE-----cccccceEeEEEcC-CCCEEE
Q 012679          217 ----QLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETY-----RGHNQEVCGLKWSA-SGQQLA  283 (458)
Q Consensus       217 ----~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~l~~sp-d~~~l~  283 (458)
                          ....+.+ |...|.++.|.   +..|++|+.|++|++||++++.. +..+     .+|...|.++.|++ ++++|+
T Consensus       145 ~~~~~~~~~~g-h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  222 (380)
T 3iz6_a          145 GNMPVSRVLTG-HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFI  222 (380)
T ss_dssp             CSSTTCCBCCC-CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred             CCccceeeccC-CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence                2334454 99999999994   46799999999999999998775 3444     57999999999987 889999


Q ss_pred             EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----
Q 012679          284 SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----  359 (458)
Q Consensus       284 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----  359 (458)
                      +|+.|+.|++||++....     .+..+.+|...|.+++|+|++ .++++++  .|++|++||+++++++..+...    
T Consensus       223 sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~-~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          223 SGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDG-QRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             EEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTS-SEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             EEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCC-CeEEEEc--CCCeEEEEECCCCcEEEEeccccccc
Confidence            999999999999985432     167788999999999999975 5667766  9999999999999998877542    


Q ss_pred             ----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE----eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          360 ----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL----SGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       360 ----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                          ..+.+++|+|+++++++  |+.||.|++||..+++.+..+    .+|.+.|++++|+|+|.+|++|+.||+|++|+
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence                23889999999999998  668999999999999888877    68999999999999999999999999999999


Q ss_pred             cCCCCc
Q 012679          432 VFGAPQ  437 (458)
Q Consensus       432 ~~~~~~  437 (458)
                      +....+
T Consensus       373 ~~~~~~  378 (380)
T 3iz6_a          373 FSGHRK  378 (380)
T ss_dssp             CCSSSS
T ss_pred             cCCCcc
Confidence            976543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-40  Score=312.47  Aligned_cols=279  Identities=17%  Similarity=0.309  Sum_probs=243.7

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+.+++|++  ..+++++.||.|++||+.+++.  +..+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~   92 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            578899988  3488889999999999998876  677888999999999999999999999999999999999999999


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~  297 (458)
                      +.. |...|.+++|+  +.+|++|+.||+|++||++.+......+.+|...|.+++|+| ++.+|++|+.|+.|++||++
T Consensus        93 ~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~  171 (304)
T 2ynn_A           93 FEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (304)
T ss_dssp             EEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred             EeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            987 99999999995  689999999999999999988777788999999999999999 67899999999999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCC-CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPF-QSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELL  375 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~  375 (458)
                      .....     ......|...+..++|+|. ...++++++  .|++|++||+++++++..+.. ...|.+++|+|++..|+
T Consensus       172 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          172 QSTPN-----FTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             CSSCS-----EEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             CCCcc-----ceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence            76542     2223456688999999884 345777776  999999999999999998875 56799999999999988


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEecCC
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC--TVASAAADETLRFWNVFG  434 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~i~iW~~~~  434 (458)
                      +  |..|+.|++||..+++.+..+..|...+.+++|+|++.  ++++|+.| .+.+|++.+
T Consensus       245 s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          245 S--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             E--EETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             E--EcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence            8  55899999999999999999999999999999999875  57766655 577888764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=323.11  Aligned_cols=281  Identities=18%  Similarity=0.219  Sum_probs=227.0

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCC---------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDG---------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~---------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~  212 (458)
                      .++++.|++ +.+++++.|+++++||....         ..........+...|.+++|+|++ .|++|+.||.|+|||+
T Consensus        32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~  110 (344)
T 4gqb_B           32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWEL  110 (344)
T ss_dssp             EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEec
Confidence            578899988 56788888888888863210         000011112245679999999985 6889999999999999


Q ss_pred             CCceeeEEec---CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEE
Q 012679          213 TANRQLRTLR---GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGG  286 (458)
Q Consensus       213 ~~~~~~~~~~---~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~  286 (458)
                      .+++.+..+.   .+|...|.+++|  ++.+|++|+.||.|++||++++. .+..+.+|...|.+++|++++. +|++|+
T Consensus       111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCCceeeec
Confidence            9987654432   249999999999  47899999999999999999765 4788999999999999999874 789999


Q ss_pred             CCCcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679          287 NDNLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC  363 (458)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~  363 (458)
                      .|++|++||+++++.      ...+  ..|...+.+++|+|++..++++|+  .|+.|++||+++++++..+.. ...|.
T Consensus       190 ~D~~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          190 EDNRILLWDTRCPKP------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVT  261 (344)
T ss_dssp             TTSCEEEEETTSSSC------EEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEE
T ss_pred             cccccccccccccce------eeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEE
Confidence            999999999998776      4443  345667999999999899999887  999999999999999988875 56799


Q ss_pred             EEEEcCCCC-eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 012679          364 ALLWNKNER-ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       364 ~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +++|+|++. +|++  |..|+.|+|||+.+++.+ .+.+|.+.|++++|+|++. +|++++.||+|++|++....
T Consensus       262 ~v~fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          262 GLVFSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999999985 4555  558999999999988755 5789999999999999986 57799999999999997543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-40  Score=312.64  Aligned_cols=255  Identities=18%  Similarity=0.301  Sum_probs=228.7

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ..++.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..+.. |...|.+++|  ++++|++|+.|+.|++||+
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            556788999999999999999999999999999999999999999987 9999999999  5799999999999999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      .++.. +..+.+|...|.+++|+|++++|++|+.|++|++||++....     ....+.+|...|.+++|+|.+..++++
T Consensus        85 ~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           85 NTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             TTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-----EEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred             CCCcE-EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-----hhhhhcccCCcEEEEEECCCCCCEEEE
Confidence            98775 678889999999999999999999999999999999876532     256788999999999999977788888


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcC--CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNK--NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM  409 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~--~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l  409 (458)
                      ++  .|+.|++||+.++.....+..  ...+..+.|+|  ++.++++  |..|+.|++||+.+++.+.++.+|...|.++
T Consensus       159 gs--~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~  234 (304)
T 2ynn_A          159 GC--LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (304)
T ss_dssp             EE--TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             Ee--CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEE
Confidence            87  999999999998887766643  35688999987  5667777  5589999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          410 AQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      +|+|++.+|++|+.||+|++||+.+.+.....
T Consensus       235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            99999999999999999999999887665543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-40  Score=318.24  Aligned_cols=288  Identities=20%  Similarity=0.346  Sum_probs=233.8

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEE-EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--ee
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELV-TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQ  217 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~  217 (458)
                      .+..++|++  ..+++++.|+.|+|||+.++...... ...+|...|++++|+|+|++||+|+.|+.|+|||+.++  +.
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            467788987  45888899999999999887643333 34689999999999999999999999999999998876  35


Q ss_pred             eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      +..+.+ |...|.+++|+  +++|++|+.|+.|++||++...  ..+..+.+|...|.+++|+|++++|++|+.|+.|++
T Consensus        98 ~~~~~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~  176 (345)
T 3fm0_A           98 VTTLEG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL  176 (345)
T ss_dssp             EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEE
T ss_pred             EEEccC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEE
Confidence            667776 99999999994  7899999999999999998764  345678899999999999999999999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---------------CeeEEEe-
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---------------ACLNSVD-  357 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---------------~~~~~~~-  357 (458)
                      ||.+....    .....+.+|...|.+++|+|++. +|++++  .|++|++||....               +++..+. 
T Consensus       177 w~~~~~~~----~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T 3fm0_A          177 YREEEDDW----VCCATLEGHESTVWSLAFDPSGQ-RLASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG  249 (345)
T ss_dssp             EEEETTEE----EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred             EEecCCCE----EEEEEecCCCCceEEEEECCCCC-EEEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence            99876532    22567889999999999999754 556665  8999999996432               2233333 


Q ss_pred             -CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--------e-eEEEeCCCCcEEEEEEcCCC-CEEEEEeCCCc
Q 012679          358 -TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--------K-MAELSGHTSRVLFMAQSPDG-CTVASAAADET  426 (458)
Q Consensus       358 -~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--------~-~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~  426 (458)
                       +...|.+++|++++..+++++  .|+.|++|+.....        . .....+|...|++++|+|++ .+|++|+.||+
T Consensus       250 ~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~  327 (345)
T 3fm0_A          250 FHSRTIYDIAWCQLTGALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE  327 (345)
T ss_dssp             SCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             CCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence             456799999999999999854  79999999986542        1 22335899999999999988 59999999999


Q ss_pred             EEEEecCCCCcccc
Q 012679          427 LRFWNVFGAPQVIS  440 (458)
Q Consensus       427 i~iW~~~~~~~~~~  440 (458)
                      |++|++...++..+
T Consensus       328 v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          328 VAFWKYQRPEGLHH  341 (345)
T ss_dssp             EEEEEECC------
T ss_pred             EEEEEecCCCCccc
Confidence            99999987765543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-40  Score=316.71  Aligned_cols=282  Identities=18%  Similarity=0.277  Sum_probs=225.3

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEe-cC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC------
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTV-DD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA------  214 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~-~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~------  214 (458)
                      .+.+++|+++.+++++.|+.|++||+.++.......+ .+ |...|.+++|+|++++||+|+.||.|+|||+..      
T Consensus        16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~   95 (330)
T 2hes_X           16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF   95 (330)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred             ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence            5778899988888899999999999988654444455 34 999999999999999999999999999999853      


Q ss_pred             -ceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679          215 -NRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGND  288 (458)
Q Consensus       215 -~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d  288 (458)
                       .+.+..+.+ |...|.+++|+  +.+|++|+.|+.|++||++...   ..+..+.+|...|.+++|+|++++|++|+.|
T Consensus        96 ~~~~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  174 (330)
T 2hes_X           96 EMDLLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD  174 (330)
T ss_dssp             CCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             cceeEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence             345566766 99999999994  7899999999999999995332   3467788999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC-CcEEEEeCCCCCCeEEEEECCCC--------CeeEEEe--
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-SNLLATGGGGGDRCIKFWNTHTG--------ACLNSVD--  357 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~ll~s~~g~~d~~i~lwd~~~~--------~~~~~~~--  357 (458)
                      ++|++||......    .++..+.+|...|.+++|+|++ ..++++++  .|++|++||+.++        .+...+.  
T Consensus       175 ~~i~iW~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~  248 (330)
T 2hes_X          175 DTVRIWKDYDDDW----ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDV  248 (330)
T ss_dssp             SCEEEEEEETTEE----EEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred             CeEEEEECCCCCe----eEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccc
Confidence            9999999865421    2367888999999999999974 35677776  9999999998765        2334443  


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--eeEE-EeCCCC-cEEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--KMAE-LSGHTS-RVLFMAQSP--DGCTVASAAADETLRFWN  431 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--~~~~-~~~h~~-~V~~l~~sp--dg~~l~s~s~Dg~i~iW~  431 (458)
                      +...|.+++|++++ .+++  +..|+.|+||+..+++  .+.. +.+|.. .|.+++|+|  ++++|++|+.||+|+||+
T Consensus       249 h~~~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          249 HKRQVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             CSSCEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             cccceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence            45689999999765 5666  4489999999998764  3333 367887 899999999  789999999999999999


Q ss_pred             cCC
Q 012679          432 VFG  434 (458)
Q Consensus       432 ~~~  434 (458)
                      +..
T Consensus       326 ~~~  328 (330)
T 2hes_X          326 LEK  328 (330)
T ss_dssp             C--
T ss_pred             ecc
Confidence            864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.6e-39  Score=304.47  Aligned_cols=277  Identities=22%  Similarity=0.437  Sum_probs=239.7

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..++++.|++  ..+++++.|+.|++|++.+++.  ...+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+.
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK  101 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            3578899987  3478888999999999998887  56678899999999999999999999999999999999999999


Q ss_pred             EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.. |...|.+++|+  +.+|++|+.||.|++||++++.. +..+..|...|.+++|+|++++|++|+.||.|++||++
T Consensus       102 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~  179 (312)
T 4ery_A          102 TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  179 (312)
T ss_dssp             EEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            9987 99999999995  68999999999999999997764 67888999999999999999999999999999999998


Q ss_pred             CCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC---eEEEEEc-CCCC
Q 012679          298 MASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ---VCALLWN-KNER  372 (458)
Q Consensus       298 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~---v~~~~~s-~~~~  372 (458)
                      ....      +..+ ..+...+..++|+|++..+++ ++  .|+.|++||+.+++++..+..+..   .....++ +++.
T Consensus       180 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          180 SGQC------LKTLIDDDNPPVSFVKFSPNGKYILA-AT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             TCCE------EEEECCSSCCCEEEEEECTTSSEEEE-EE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             CCce------eeEEeccCCCceEEEEECCCCCEEEE-Ec--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence            7754      3433 456678999999998665554 44  899999999999999888865322   2223344 5667


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEecC
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA--ADETLRFWNVF  433 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~i~iW~~~  433 (458)
                      ++++  |..||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++  .|++|++|+..
T Consensus       251 ~l~s--g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          251 WIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEE--CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEE--ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            7776  66899999999999999999999999999999999999999997  69999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-40  Score=317.70  Aligned_cols=287  Identities=16%  Similarity=0.261  Sum_probs=226.1

Q ss_pred             ccccceeeccC-CC-eEEEEc------CCEEEEEECCCCCeee--EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Q 012679          141 DYYLNLLDWGS-SN-VLAIAL------GSTVYLWDASDGTTSE--LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLW  210 (458)
Q Consensus       141 d~~~~~~~~~~-~~-~la~~~------d~~v~iwd~~~~~~~~--~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iw  210 (458)
                      +..++++.|++ +. +++++.      |+.|++|+..++....  .....+|...|++++|+|++. +++++.||+|+||
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lW  120 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELW  120 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEe
Confidence            44688999998 34 555554      6789999988765321  223346788999999999986 5567889999999


Q ss_pred             eCCCceeeEEe---cCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEE
Q 012679          211 DSTANRQLRTL---RGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLAS  284 (458)
Q Consensus       211 d~~~~~~~~~~---~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s  284 (458)
                      |+.+++.....   ..+|...|.+++|+  +.+|++|+.||.|++||++++. .+..+.+|...|.+++|++++. ++++
T Consensus       121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s  199 (357)
T 4g56_B          121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLS  199 (357)
T ss_dssp             --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred             eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeee
Confidence            99887654322   12499999999994  7899999999999999998765 4778899999999999999875 7899


Q ss_pred             EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679          285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC  363 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~  363 (458)
                      ++.||.|++||++++....    ...+..|...+.+++|+|++..++++++  .|+.|++||+++++++..+.. ...|.
T Consensus       200 ~~~dg~v~~wd~~~~~~~~----~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~  273 (357)
T 4g56_B          200 CGEDGRILLWDTRKPKPAT----RIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNIT  273 (357)
T ss_dssp             EETTSCEEECCTTSSSCBC----BCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEE
T ss_pred             eccCCceEEEECCCCceee----eeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEE
Confidence            9999999999998876521    2234467788999999999899999887  999999999999999888864 56799


Q ss_pred             EEEEcCCCCe-EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          364 ALLWNKNERE-LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       364 ~~~~s~~~~~-l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +++|+|++.. |++  |..|+.|+|||+.+++.+..+ +|.+.|++++|+| ++.+|+|++.||+|++|++....+.
T Consensus       274 ~l~~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          274 GLAYSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EEEECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EEEEcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            9999999864 555  458999999999999887655 7999999999999 8999999999999999999765443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.5e-39  Score=309.81  Aligned_cols=277  Identities=17%  Similarity=0.255  Sum_probs=231.7

Q ss_pred             ccceeec-----cC---CCeEEEEcCCEEEEEECCCCC-----eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679          143 YLNLLDW-----GS---SNVLAIALGSTVYLWDASDGT-----TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL  209 (458)
Q Consensus       143 ~~~~~~~-----~~---~~~la~~~d~~v~iwd~~~~~-----~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~i  209 (458)
                      .++++.|     ++   ..+++++.|++|++||+.+++     ......+.+|...|++++|+|++.+|++|+.||+|+|
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l  102 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL  102 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence            4667776     32   458889999999999987643     2345678899999999999999999999999999999


Q ss_pred             EeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEE---cccccceEeEEEcCCC-----
Q 012679          210 WDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETY---RGHNQEVCGLKWSASG-----  279 (458)
Q Consensus       210 wd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~l~~spd~-----  279 (458)
                      ||+.+++.+..+.+ |...|.+++|+  +.+|++|+.|+.|++||+....  ....   .+|...|.+++|+|++     
T Consensus       103 wd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~  179 (343)
T 2xzm_R          103 WDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSANK  179 (343)
T ss_dssp             EETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCSC
T ss_pred             EECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccccc
Confidence            99999999999987 99999999994  6899999999999999997432  2222   3788999999999987     


Q ss_pred             -----CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCee
Q 012679          280 -----QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACL  353 (458)
Q Consensus       280 -----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~  353 (458)
                           .+|++++.|+.|++||.. ..      ....+.+|...|.+++|+|++. +|++++  .|+.|++||+. .....
T Consensus       180 ~~~~~~~l~s~~~d~~i~iwd~~-~~------~~~~~~~h~~~v~~~~~s~~g~-~l~sgs--~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          180 VQPFAPYFASVGWDGRLKVWNTN-FQ------IRYTFKAHESNVNHLSISPNGK-YIATGG--KDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCSSCCEEEEEETTSEEEEEETT-TE------EEEEEECCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEESSCCSSCS
T ss_pred             cCCCCCEEEEEcCCCEEEEEcCC-Cc------eeEEEcCccccceEEEECCCCC-EEEEEc--CCCeEEEEECCCCcccc
Confidence                 799999999999999943 22      2567889999999999999755 556665  89999999994 45566


Q ss_pred             EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE--EEe-----------CCCCcEEEEEEcCCCCEEEE
Q 012679          354 NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA--ELS-----------GHTSRVLFMAQSPDGCTVAS  420 (458)
Q Consensus       354 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~--~~~-----------~h~~~V~~l~~spdg~~l~s  420 (458)
                      ..+.....|.+++|+|++..+++  | .|+.|++|++.+.+...  .+.           +|...|.+++|+|+|++|++
T Consensus       250 ~~~~~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  326 (343)
T 2xzm_R          250 REFDAGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA  326 (343)
T ss_dssp             EEEECSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred             eeecCCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence            66667788999999999987765  3 47889999998766443  443           68889999999999999999


Q ss_pred             EeCCCcEEEEecCCC
Q 012679          421 AAADETLRFWNVFGA  435 (458)
Q Consensus       421 ~s~Dg~i~iW~~~~~  435 (458)
                      |+.||+|++|++.++
T Consensus       327 g~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          327 GFTDGVIRTFSFETS  341 (343)
T ss_dssp             EETTSEEEEEEEEEE
T ss_pred             ecCCceEEEEEEEcc
Confidence            999999999998643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.2e-38  Score=301.50  Aligned_cols=282  Identities=22%  Similarity=0.333  Sum_probs=245.0

Q ss_pred             cccceeeccCC---CeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ..+++++|+++   .+++++.|++|+|||+.+++.   .....+.+|...|++++|+|+|++|++|+.||.|++|+....
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~  118 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG  118 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc
Confidence            46899999863   377889999999999886542   346678899999999999999999999999999999999999


Q ss_pred             eeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC--CEEEEEECCCcE
Q 012679          216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG--QQLASGGNDNLL  291 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~--~~l~sg~~dg~i  291 (458)
                      ........ +...+..+.+  ++..|++|+.|+.+++||+...........+|...+..++|++++  .++++++.|+.|
T Consensus       119 ~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i  197 (340)
T 4aow_A          119 TTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV  197 (340)
T ss_dssp             EEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred             ceeeeecC-CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEE
Confidence            88887776 7778888888  468999999999999999987776666677899999999999864  578999999999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE  371 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~  371 (458)
                      ++||++....      +..+.+|...|.+++|+|++. ++++++  .|+.|++||+++++++..+.....+..++|+|++
T Consensus       198 ~i~d~~~~~~------~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  268 (340)
T 4aow_A          198 KVWNLANCKL------KTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR  268 (340)
T ss_dssp             EEEETTTTEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred             EEEECCCCce------eeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence            9999988765      778889999999999999754 566665  8999999999999999999999999999999988


Q ss_pred             CeEEEEecCCCCcEEEEeCCCceeeEEEe---------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMVKMAELS---------GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~---------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ..++++   .|+.|++||+.+...+..+.         +|...|++++|+|||++|++|+.||.|+|||+.++.
T Consensus       269 ~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          269 YWLCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SEEEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ceeecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            766543   58999999999887776653         688899999999999999999999999999998775

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-38  Score=311.83  Aligned_cols=278  Identities=22%  Similarity=0.384  Sum_probs=233.3

Q ss_pred             cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCC------------------CCEEEEEEcCCCCEEEEEe
Q 012679          142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDEN------------------GPVTSVNWAPDGRHIAIGL  202 (458)
Q Consensus       142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~------------------~~V~~v~~s~~g~~la~g~  202 (458)
                      ..++++.|++ +.+++.+.++.+++|++.+++.  +..+..|.                  ..|++++|+|+|++||+|+
T Consensus        65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~  142 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  142 (393)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEcCCcEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence            4678999998 5677788899999999999886  44444332                  2499999999999999999


Q ss_pred             cCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CC
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SG  279 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~  279 (458)
                      .||.|+|||+.+++.+..+.+ |...|.+++|  ++.+|++|+.|+.|++||++++.. ...+ .+...+.+++|+| ++
T Consensus       143 ~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          143 EDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTL-SIEDGVTTVAVSPGDG  219 (393)
T ss_dssp             TTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSTTC
T ss_pred             CCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEE-EcCCCcEEEEEECCCC
Confidence            999999999999999998887 9999999999  478999999999999999987764 3333 3567899999999 89


Q ss_pred             CEEEEEECCCcEEEEeCCCCCCCCcceeeeee-------cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-
Q 012679          280 QQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-------EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-  351 (458)
Q Consensus       280 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-  351 (458)
                      ++|++|+.|+.|++||++++..      +..+       .+|...|.+++|+|++. ++++++  .|+.|++||+++.. 
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~------~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFL------VERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANN  290 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCE------EEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC-----
T ss_pred             CEEEEEcCCCcEEEEECCCCcE------EEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCCC
Confidence            9999999999999999987754      3333       57899999999999765 556665  89999999997643 


Q ss_pred             -----------eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC------
Q 012679          352 -----------CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP------  413 (458)
Q Consensus       352 -----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp------  413 (458)
                                 +...+ .+...|.+++|++++.+|++  |..|+.|++||..+++.+..+.+|...|.+++|++      
T Consensus       291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p  368 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP  368 (393)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred             cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCC
Confidence                       33344 34567999999999999998  55899999999999999999999999999999986      


Q ss_pred             CCCEEEEEeCCCcEEEEecCCC
Q 012679          414 DGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ++.+|++|+.||+|+||++...
T Consensus       369 ~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          369 EYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCEEEEECCCCcEEECccccc
Confidence            6889999999999999998643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2e-38  Score=328.12  Aligned_cols=288  Identities=19%  Similarity=0.283  Sum_probs=237.5

Q ss_pred             cccceeeccCC---CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      ..+++++|+++   .+++++.|++|++||..+++.  ...+.+|...|++++|+|+|++||+|+.||+|+|||+.+++.+
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE--eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence            36888999884   388899999999999887765  6778899999999999999999999999999999999999988


Q ss_pred             EEecC------CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCee-------------------------------
Q 012679          219 RTLRG------GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHI-------------------------------  259 (458)
Q Consensus       219 ~~~~~------~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~-------------------------------  259 (458)
                      ..+..      +|...|.+++|+  +.+|++|+.|++|++||++++...                               
T Consensus       226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~  305 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF  305 (611)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred             eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence            88842      499999999994  789999999999999999865421                               


Q ss_pred             -----------EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc-----ee----------------
Q 012679          260 -----------VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT-----QW----------------  307 (458)
Q Consensus       260 -----------~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~----------------  307 (458)
                                 ...+.+|...|.+++|+|++++|++++.|+.|++||+.++......     ..                
T Consensus       306 i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  385 (611)
T 1nr0_A          306 INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS  385 (611)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence                       2345689999999999999999999999999999998765321000     00                


Q ss_pred             --------------------------------------------------------eeeecccccceeEEEecCCCCcEE
Q 012679          308 --------------------------------------------------------LHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       308 --------------------------------------------------------~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                                                                              +..+ .|...+.+++|+|++. ++
T Consensus       386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~-~l  463 (611)
T 1nr0_A          386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQ-FV  463 (611)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSC-EE
T ss_pred             cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCC-EE
Confidence                                                                    0000 1345578899999754 66


Q ss_pred             EEeCCCCCCeEEEEECCCCCe--eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEE--EeCCCCcE
Q 012679          332 ATGGGGGDRCIKFWNTHTGAC--LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAE--LSGHTSRV  406 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~--~~~h~~~V  406 (458)
                      ++++  .|+.|++||+.++..  +....+...|.+++|+|++++|++  +..|+.|++|++.+ ++.+..  +.+|...|
T Consensus       464 asgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las--~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V  539 (611)
T 1nr0_A          464 AVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKV  539 (611)
T ss_dssp             EEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             EEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE--EcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence            6665  899999999987653  344567788999999999999998  45899999999987 665544  34599999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          407 LFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       407 ~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      .+++|+|||++|++|+.|++|++|++..+..
T Consensus       540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~  570 (611)
T 1nr0_A          540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  570 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             eEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence            9999999999999999999999999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-38  Score=326.68  Aligned_cols=278  Identities=20%  Similarity=0.324  Sum_probs=235.3

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEE
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRT  220 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~  220 (458)
                      ...++|++ ++.++.+.++.|++|++.+++.  ...+.+|...|++++|+|+|++||+|+.||+|+|||+.+++  ....
T Consensus        21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~--~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~   98 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTD--TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   98 (611)
T ss_dssp             CCCCEECTTSSEEEEEETTEEEEEETTCSSC--CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             eeEEeeCCCCCEEEeCCCCEEEEecCCCccc--CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEe
Confidence            45577887 4566667789999999988776  66788999999999999999999999999999999997543  3445


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCC----CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEEE
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMD----GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLHI  293 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~i  293 (458)
                      +.. |...|.+++|+  +..|++++.+    +.|++||..  . ....+.+|...|.+++|+|++. .|++|+.|++|++
T Consensus        99 ~~~-~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l  174 (611)
T 1nr0_A           99 IPV-FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--T-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  174 (611)
T ss_dssp             EEC-SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--C-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             ecc-cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--C-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence            665 99999999994  6888888765    478888753  3 2456789999999999999987 6999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE--------eCCCCeEEE
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--------DTGSQVCAL  365 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~--------~~~~~v~~~  365 (458)
                      ||....+.      ...+.+|...|.+++|+|++. ++++++  .|++|++||+.+++++..+        .+...|.++
T Consensus       175 wd~~~~~~------~~~l~~H~~~V~~v~fspdg~-~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v  245 (611)
T 1nr0_A          175 FEGPPFKF------KSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  245 (611)
T ss_dssp             EETTTBEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             EECCCCeE------eeeeccccCceEEEEECCCCC-EEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEE
Confidence            99776543      678899999999999999754 666666  8999999999999998887        356789999


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-------------------------------------------EEeCC
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-------------------------------------------ELSGH  402 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-------------------------------------------~~~~h  402 (458)
                      +|+|+++.|+++  ..|++|++||+.+++.+.                                           .+.+|
T Consensus       246 ~~spdg~~l~s~--s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh  323 (611)
T 1nr0_A          246 TWSPDGTKIASA--SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH  323 (611)
T ss_dssp             EECTTSSEEEEE--ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EECCCCCEEEEE--eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC
Confidence            999999999984  489999999998776543                                           34579


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      ...|++++|+|||++|++++.|++|++||+..+...
T Consensus       324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            999999999999999999999999999999876543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-38  Score=313.41  Aligned_cols=251  Identities=21%  Similarity=0.371  Sum_probs=227.3

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~  254 (458)
                      ..+.+|.++|++++|+|++.+|++|+.||.|+|||+.+++....+.+ |...|.+++|+  +.+|++|+.||.|++||+.
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45678999999999999999999999999999999999999999987 99999999994  6899999999999999998


Q ss_pred             CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      +.. .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++..      +..+.+|...|.+++|+|++ .+++++
T Consensus       181 ~~~-~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~------~~~~~~h~~~v~~~~~~~~g-~~l~s~  252 (410)
T 1vyh_C          181 GFE-CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------VKTFTGHREWVRMVRPNQDG-TLIASC  252 (410)
T ss_dssp             SSC-EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------EEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             CCc-eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE------EEEEeCCCccEEEEEECCCC-CEEEEE
Confidence            765 4678889999999999999999999999999999999998766      78888999999999999975 566666


Q ss_pred             CCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCC--------------------CCeEEEEecCCCCcEEEEeCCCc
Q 012679          335 GGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKN--------------------ERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~--------------------~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      +  .|+.|++||+.++++...+. +...|.+++|+|+                    +.++++  |..|+.|++||+.++
T Consensus       253 s--~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~  328 (410)
T 1vyh_C          253 S--NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTG  328 (410)
T ss_dssp             E--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTT
T ss_pred             c--CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCC
Confidence            5  89999999999999988875 4567999999997                    456766  558999999999999


Q ss_pred             eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ..+..+.+|...|++++|+|+|++|++|+.||+|++||+.++.....
T Consensus       329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~  375 (410)
T 1vyh_C          329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT  375 (410)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred             ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            99999999999999999999999999999999999999987765544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-38  Score=301.30  Aligned_cols=297  Identities=15%  Similarity=0.217  Sum_probs=255.4

Q ss_pred             CCCCCceeeeCCCCCCccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 012679          125 IPQSSERTLDAPDLVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL  202 (458)
Q Consensus       125 i~~~~~~~l~~~~~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~  202 (458)
                      .++...+.+...+..  ..++++.|++  ..+++++.|+.|++||+.+++.  +..+.+|...|++++|+|++++|++++
T Consensus        18 ~~G~~~~~~~l~~h~--~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           18 FQGSHMKAIKLTGHE--RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER--LGTLDGHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             SSCCSEEEEEEECCS--SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EeccccccEEEEEee--ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh--hhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence            344455554444433  3588899987  3477778899999999999876  677889999999999999999999999


Q ss_pred             cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCC-----CcEEEEEccCCCe----------eEEEEcc
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMD-----GLIINNDVRVRDH----------IVETYRG  265 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-----g~i~vwd~~~~~~----------~~~~~~~  265 (458)
                      .||.|++||+.+++.+..+.  +...|.+++|+  +.+|++++.+     |.|.+||+.....          ....+..
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  171 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT  171 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence            99999999999999998888  88899999994  7899999998     9999999986542          2344556


Q ss_pred             ccc--ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679          266 HNQ--EVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIK  343 (458)
Q Consensus       266 h~~--~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~  343 (458)
                      |..  .+.+++|+|++++|++++.||.|++||++....     .+..+..|...|.+++|+|++..+ ++++  .|+.|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~--~d~~i~  243 (369)
T 3zwl_B          172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-----YVDSIDLHEKSISDMQFSPDLTYF-ITSS--RDTNSF  243 (369)
T ss_dssp             CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-----EEEEEECCSSCEEEEEECTTSSEE-EEEE--TTSEEE
T ss_pred             CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-----eEEEEecCCCceeEEEECCCCCEE-EEec--CCceEE
Confidence            666  899999999999999999999999999987322     267788899999999999976555 5554  899999


Q ss_pred             EEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--------------cEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679          344 FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--------------QLTLWKYPSMVKMAELSGHTSRVLFM  409 (458)
Q Consensus       344 lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--------------~i~iwd~~~~~~~~~~~~h~~~V~~l  409 (458)
                      +||+.+++.+..+.....+..++|+|+++.++++.  .++              .+++||..+++.+..+.+|...|+++
T Consensus       244 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~  321 (369)
T 3zwl_B          244 LVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGG--GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV  321 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE--CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEECCCCceeeeecCCCCceeEEecCCCceEEEee--cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence            99999999999999999999999999999999964  455              89999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          410 AQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      +|+|++++|++++.||.|++|++..+..
T Consensus       322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          322 AISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             EECCCCCEEEEEcCCCeEEEEECccccc
Confidence            9999999999999999999999976543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-37  Score=326.25  Aligned_cols=278  Identities=22%  Similarity=0.318  Sum_probs=239.2

Q ss_pred             cccceeeccCC---CeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ..+++++|+++   .+++++.|++|++||+.+...   .....+.+|...|++++|+|+|++|++|+.||.|+|||+.++
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~  462 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG  462 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            45888899763   378889999999999976432   235667899999999999999999999999999999999999


Q ss_pred             eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEE---EcccccceEeEEEcCCC--CEEEEEECC
Q 012679          216 RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVET---YRGHNQEVCGLKWSASG--QQLASGGND  288 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~h~~~v~~l~~spd~--~~l~sg~~d  288 (458)
                      +.+..+.+ |...|.+++|+  +.+|++|+.|++|++||+..... ...   ..+|...|.+++|+|++  ..|++|+.|
T Consensus       463 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d  540 (694)
T 3dm0_A          463 VSTRRFVG-HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD  540 (694)
T ss_dssp             EEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             cceeEEeC-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence            99999987 99999999994  68999999999999999865432 222   24788999999999986  689999999


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEc
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN  368 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s  368 (458)
                      +.|++||++....      ...+.+|...|.+++|+|++ .++++++  .|+.|++||+.+++++..+.....+.+++|+
T Consensus       541 ~~v~vwd~~~~~~------~~~~~~h~~~v~~v~~spdg-~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  611 (694)
T 3dm0_A          541 KTVKVWNLSNCKL------RSTLAGHTGYVSTVAVSPDG-SLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFS  611 (694)
T ss_dssp             SCEEEEETTTCCE------EEEECCCSSCEEEEEECTTS-SEEEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEEC
T ss_pred             CeEEEEECCCCcE------EEEEcCCCCCEEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEc
Confidence            9999999988765      77888999999999999975 5666666  8999999999999999988888899999999


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-------------------CcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-------------------SRVLFMAQSPDGCTVASAAADETLRF  429 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-------------------~~V~~l~~spdg~~l~s~s~Dg~i~i  429 (458)
                      |++..++++   .++.|+|||+.+++.+..+..+.                   ..+++++|+|+|++|++|+.||+|+|
T Consensus       612 p~~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          612 PNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV  688 (694)
T ss_dssp             SSSSEEEEE---ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCcEEEEE---cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence            999888774   36779999999999888775432                   13789999999999999999999999


Q ss_pred             EecC
Q 012679          430 WNVF  433 (458)
Q Consensus       430 W~~~  433 (458)
                      |++.
T Consensus       689 W~i~  692 (694)
T 3dm0_A          689 WGIG  692 (694)
T ss_dssp             EEC-
T ss_pred             Eecc
Confidence            9985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3e-38  Score=308.59  Aligned_cols=280  Identities=16%  Similarity=0.202  Sum_probs=244.8

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCC----eeeEEEecCCCCCEEEEEEcCC----C---CEEEEEecCCeEEEE
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGT----TSELVTVDDENGPVTSVNWAPD----G---RHIAIGLNNCQVQLW  210 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~----~~~~~~~~~h~~~V~~v~~s~~----g---~~la~g~~dg~v~iw  210 (458)
                      ..+++++|+++.+++++.||.|++||+.+++    ...+..+.+|...|++++|+|+    |   ++|++|+.||.|++|
T Consensus        17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw   96 (397)
T 1sq9_A           17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   96 (397)
T ss_dssp             SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence            4688999999889999999999999999887    2236677789999999999999    9   999999999999999


Q ss_pred             eCCCcee-----eEEecCCC-----cccEEEEEeC------CCe-EEEEeCCCcEEEEEccC------CCeeEE-----E
Q 012679          211 DSTANRQ-----LRTLRGGH-----RSRVGSLAWN------NHI-LTTGGMDGLIINNDVRV------RDHIVE-----T  262 (458)
Q Consensus       211 d~~~~~~-----~~~~~~~~-----~~~v~~l~~~------~~~-l~sg~~dg~i~vwd~~~------~~~~~~-----~  262 (458)
                      |+.+++.     +..+.. |     ...|.+++|+      +.+ |++|+.||.|++||++.      ... +.     .
T Consensus        97 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~  174 (397)
T 1sq9_A           97 RITREDETKKVIFEKLDL-LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLE  174 (397)
T ss_dssp             EEEECTTTCCEEEEEECC-SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEE
T ss_pred             EccCCcccccccceeecc-cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcce
Confidence            9998886     777776 7     5899999998      578 99999999999999987      443 22     4


Q ss_pred             E-------cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc---c---ccceeEEEecCCCCc
Q 012679          263 Y-------RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE---H---TSAVKAIAWCPFQSN  329 (458)
Q Consensus       263 ~-------~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---h---~~~v~~l~~~p~~~~  329 (458)
                      +       ..|...|.+++|+|++ +|++|+.||.|++||++....      +..+..   |   ...|.+++|+|++. 
T Consensus       175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~h~~~~~~i~~i~~~~~~~-  246 (397)
T 1sq9_A          175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP------LYNFESQHSMINNSNSIRSVKFSPQGS-  246 (397)
T ss_dssp             EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE------EEEEECCC---CCCCCEEEEEECSSTT-
T ss_pred             eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce------eEEEeccccccccCCccceEEECCCCC-
Confidence            4       4588999999999999 999999999999999987654      677777   8   99999999999755 


Q ss_pred             EEEEeCCCCC---CeEEEEECCCCCeeEEEe--------------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          330 LLATGGGGGD---RCIKFWNTHTGACLNSVD--------------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       330 ll~s~~g~~d---~~i~lwd~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      ++++++  .|   +.|++||+++++++..+.              +...|.+++|+|++++|++  |..|+.|++||+.+
T Consensus       247 ~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          247 LLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKT  322 (397)
T ss_dssp             EEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTT
T ss_pred             EEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCC
Confidence            455554  78   999999999999998886              4678999999999999988  44899999999999


Q ss_pred             ceeeEEEe------CC---------------CCcEEEEEEcCCC----------CEEEEEeCCCcEEEEecCCC
Q 012679          393 MVKMAELS------GH---------------TSRVLFMAQSPDG----------CTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       393 ~~~~~~~~------~h---------------~~~V~~l~~spdg----------~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ++.+..+.      +|               ...|++++|+|+|          ++|++++.||.|++|++.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            99999999      88               9999999999998          79999999999999999765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=293.89  Aligned_cols=253  Identities=21%  Similarity=0.318  Sum_probs=221.7

Q ss_pred             EEEecCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEeCCCcee--eEEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679          176 LVTVDDENGPVTSVNWAPD----GRHIAIGLNNCQVQLWDSTANRQ--LRTLRGGHRSRVGSLAWN--NHILTTGGMDGL  247 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~----g~~la~g~~dg~v~iwd~~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  247 (458)
                      ...+.+|.+.|++++|+|+    +.+|++|+.||+|+|||+..++.  ...+.+ |...|.+++|+  +.++++|+.|+.
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCc
Confidence            3456789999999999984    67999999999999999987654  335565 99999999995  689999999999


Q ss_pred             EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      |++||+.++.. +..+..|...+.+++|+|++++|++|+.||.|++||++.+..      ...+..|...|.+++|+|++
T Consensus       104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~------~~~~~~~~~~v~~~~~spdg  176 (321)
T 3ow8_A          104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK------EYSLDTRGKFILSIAYSPDG  176 (321)
T ss_dssp             EEEEETTTTEE-EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE------EEEEECSSSCEEEEEECTTS
T ss_pred             EEEEECCCCCE-EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce------eEEecCCCceEEEEEECCCC
Confidence            99999987764 677788899999999999999999999999999999988765      67778889999999999976


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV  406 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V  406 (458)
                      . ++++++  .|+.|++||+++++++..+.. ...|.+++|+|++++|++  |..|+.|++||+.+++.+..+.+|...|
T Consensus       177 ~-~lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v  251 (321)
T 3ow8_A          177 K-YLASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWV  251 (321)
T ss_dssp             S-EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             C-EEEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCce
Confidence            5 555555  899999999999999988864 567999999999999988  5589999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          407 LFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       407 ~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      .+++|+|++.+|++++.|++|++||+..+..+...
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            99999999999999999999999999887765543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-37  Score=288.71  Aligned_cols=277  Identities=18%  Similarity=0.227  Sum_probs=236.8

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc---eee
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN---RQL  218 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~---~~~  218 (458)
                      .++++.|.. +.+++++.||.|++||+.+++.  ...+..|...|.+++|+|++++|++|+.||.|++|++...   +.+
T Consensus        20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~   97 (313)
T 3odt_A           20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQWL--GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL   97 (313)
T ss_dssp             CEEEEEEEETTEEEEEETTSEEEEEEESSSEE--EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred             CcEEEEecCCCEEEEEEcCCcEEEEECCCCEE--EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence            567777733 5688888999999999988765  5566678999999999999999999999999999998654   556


Q ss_pred             EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCC
Q 012679          219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~  297 (458)
                      ..+.. |...|.+++|++.+|++++.||.|++||   .......+..|...+.++.|+| ++++|++++.||.|++||..
T Consensus        98 ~~~~~-~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~  173 (313)
T 3odt_A           98 YTLIG-HQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND  173 (313)
T ss_dssp             CEECC-CSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             cchhh-cccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC
Confidence            66666 9999999999999999999999999999   3345677889999999999998 99999999999999999932


Q ss_pred             CCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEE
Q 012679          298 MASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELL  375 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~  375 (458)
                      .  .      ...+.. |...|.+++|+|++.  +++++  .|+.|++||+++++++..+. +...+.+++|+|++ .++
T Consensus       174 ~--~------~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  240 (313)
T 3odt_A          174 K--V------IKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV  240 (313)
T ss_dssp             E--E------EEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE
T ss_pred             c--e------EEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE
Confidence            2  1      555665 899999999999765  55555  89999999999999998887 56789999999999 466


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      +  +..|+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++..+......
T Consensus       241 ~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          241 S--CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             E--EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             E--EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            5  45899999999999999999999999999999999998 667999999999999877655443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-36  Score=287.51  Aligned_cols=278  Identities=19%  Similarity=0.272  Sum_probs=236.4

Q ss_pred             ccccceeeccC-CCeEEEEcCCEEEEEECCCCCee-eEEEe--cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          141 DYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTS-ELVTV--DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       141 d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~-~~~~~--~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      ...+.++.|++ +.+++++.||.|++||+.+++.. .+..+  .+|...|++++|+|++++|++|+.||.|++||+.+++
T Consensus        51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  130 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence            34678899987 45666666999999999876531 22233  3789999999999999999999999999999999887


Q ss_pred             --eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          217 --QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       217 --~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                        ....+.. |...|.+++|+  +.+|++++.||.|++||+++.. ....+..|...|.+++|+|++++|++++.||.|+
T Consensus       131 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  208 (337)
T 1gxr_A          131 PRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR  208 (337)
T ss_dssp             -EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cceeeeccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence              5556665 89999999994  6899999999999999998765 4678888999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      +||++....      +..+ .+...+.+++|+|++..++ +++  .|+.|++||+.+++......+...+.+++|+|+++
T Consensus       209 ~~d~~~~~~------~~~~-~~~~~v~~~~~s~~~~~l~-~~~--~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          209 SWDLREGRQ------LQQH-DFTSQIFSLGYCPTGEWLA-VGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EEETTTTEE------EEEE-ECSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred             EEECCCCce------Eeee-cCCCceEEEEECCCCCEEE-EEc--CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCC
Confidence            999988754      4443 4778899999999865554 444  79999999999998876667788899999999999


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++++  +..+|.|++|++.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus       279 ~l~~--~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          279 WFVS--TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEE--EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEE--ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9988  447999999999999888554 588899999999999999999999999999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=297.15  Aligned_cols=242  Identities=17%  Similarity=0.250  Sum_probs=207.1

Q ss_pred             cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeE--EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSEL--VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~--~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      ..++++.|++ +.+++++.||+|+|||+.+++....  ..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+++.+
T Consensus        83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~  162 (344)
T 4gqb_B           83 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL  162 (344)
T ss_dssp             SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            3578899988 5688899999999999998875333  335589999999999999999999999999999999999999


Q ss_pred             EEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcC-CCCEEEEEECCCcEE
Q 012679          219 RTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSA-SGQQLASGGNDNLLH  292 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~  292 (458)
                      ..+.+ |...|.+++|+  + .+|++|+.||.|++||+++++.. ..+  ..|...+.+++|+| ++++|++|+.||.|+
T Consensus       163 ~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          163 SSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-EECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEcC-cCCceEEEEecCCCCCceeeecccccccccccccccee-eeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            99987 99999999994  3 57899999999999999987753 333  35666799999999 567899999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      +||+++++.      +..+.+|...|.+++|+|++..+|++++  .|++|++||+.+++++....+...|.+++|+|++.
T Consensus       241 ~wd~~~~~~------~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          241 LVDTKSTSC------VLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNH  312 (344)
T ss_dssp             EEESCC--C------CEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSST
T ss_pred             EEECCCCcE------EEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCC
Confidence            999998876      7888999999999999999888888887  99999999999999887767788999999999998


Q ss_pred             eEEEEecCCCCcEEEEeCCCce
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMV  394 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~  394 (458)
                      .++++ +..|++|++|++++..
T Consensus       313 ~llas-~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          313 SLLTT-VGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TEEEE-EETTSCEEEEECCC--
T ss_pred             eEEEE-EcCCCeEEEEECCCCC
Confidence            87765 3479999999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=311.45  Aligned_cols=286  Identities=20%  Similarity=0.379  Sum_probs=241.8

Q ss_pred             ccceeeccCC-C-eEEE-----------EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679          143 YLNLLDWGSS-N-VLAI-----------ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQL  209 (458)
Q Consensus       143 ~~~~~~~~~~-~-~la~-----------~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~i  209 (458)
                      .+.+++|+++ . ++++           +.|+.|++||+.+++.........|...|++++|+|++++|++|+.||.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            4667888874 2 4544           4789999999998753222222357889999999999999999999999999


Q ss_pred             EeCCC----ceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC------eeE--EEEcccccceEeEE
Q 012679          210 WDSTA----NRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD------HIV--ETYRGHNQEVCGLK  274 (458)
Q Consensus       210 wd~~~----~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~------~~~--~~~~~h~~~v~~l~  274 (458)
                      ||+.+    .+.+..+.. |...|.+++|+   +.+|++|+.||.|++||+++..      ...  .....|...|.+++
T Consensus        94 w~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           94 YSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             ECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             eecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            99987    456777776 99999999995   6899999999999999998775      222  23467999999999


Q ss_pred             EcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc------ccceeEEEecCCCCcEEEEeCCCCCC---eEEE
Q 012679          275 WSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH------TSAVKAIAWCPFQSNLLATGGGGGDR---CIKF  344 (458)
Q Consensus       275 ~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~p~~~~ll~s~~g~~d~---~i~l  344 (458)
                      |+|+ +.+|++++.||.|++||++....      +..+..|      ...|.+++|+|++..++++++  .|+   .|++
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~  244 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDLKAKKE------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILI  244 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEETTTTEE------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCE
T ss_pred             eCCCCCcEEEEEcCCCCEEEEECCCCCc------ceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEE
Confidence            9999 78999999999999999988765      5555555      789999999999888888876  787   9999


Q ss_pred             EECCCC-CeeEEEe--CCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC-CEEE
Q 012679          345 WNTHTG-ACLNSVD--TGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG-CTVA  419 (458)
Q Consensus       345 wd~~~~-~~~~~~~--~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~  419 (458)
                      ||++++ .++..+.  +...|.+++|+| ++.++++  +..|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|+
T Consensus       245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred             EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence            999986 5666665  567899999999 8888888  4489999999999999999999999999999999999 8999


Q ss_pred             EEeCCCcEEEEecCCCCccc
Q 012679          420 SAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       420 s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      +++.||.|++|++.......
T Consensus       323 s~~~d~~i~iw~~~~~~~~~  342 (416)
T 2pm9_A          323 CASFDNKIEVQTLQNLTNTL  342 (416)
T ss_dssp             ECCSSSEEEEEESCCCCCSS
T ss_pred             EEecCCcEEEEEccCCCCCc
Confidence            99999999999998776543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.7e-38  Score=310.02  Aligned_cols=288  Identities=17%  Similarity=0.214  Sum_probs=227.9

Q ss_pred             ccccceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCce
Q 012679          141 DYYLNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       141 d~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      +..+++++|+|   +.+++|+.||.|+|||+.+++......+.+|.+.|++|+|+| ++++|++|+.||+|+|||++++.
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI  198 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence            34689999987   247778889999999999888766777889999999999998 78999999999999999998765


Q ss_pred             eeEEecC-CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEE
Q 012679          217 QLRTLRG-GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLH  292 (458)
Q Consensus       217 ~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~  292 (458)
                      ....... .+...+.+++|  ++.+|++|+.||.|++||++..  .+..+.+|...|.+++|+|++. +|++|+.|+.|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence            4333322 23445778888  5789999999999999999754  3567889999999999999876 788999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------CeEEE
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------QVCAL  365 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------~v~~~  365 (458)
                      |||++.......   +....+|...|.+++|+|++.. |++++  .|+.|++||+.++.+...+..+.       .+...
T Consensus       277 iwd~~~~~~~~~---~~~~~~h~~~v~~~~~spdg~~-l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          277 IWDLRQVRGKAS---FLYSLPHRHPVNAACFSPDGAR-LLTTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             EEETTTCCSSSC---CSBCCBCSSCEEECCBCTTSSE-EEEEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             EEecccccccce---EEEeeeccccccceeECCCCCe-eEEEc--CCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            999988765321   3344679999999999997655 45555  89999999999998776663321       23456


Q ss_pred             EEcCCCCeEEEEe----------cCCCCcEEEEeCCCceeeEEEe-CCCCcEEEE-EEcCCCCEEEEEeCCCcEEEEecC
Q 012679          366 LWNKNERELLSSH----------GFTQNQLTLWKYPSMVKMAELS-GHTSRVLFM-AQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       366 ~~s~~~~~l~~~~----------g~~d~~i~iwd~~~~~~~~~~~-~h~~~V~~l-~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      .|++++..++++.          +..++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++.
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence            6777777766642          2345689999999999988875 678888887 6999999999875 8899999998


Q ss_pred             CCCc
Q 012679          434 GAPQ  437 (458)
Q Consensus       434 ~~~~  437 (458)
                      +++.
T Consensus       430 ~gk~  433 (435)
T 4e54_B          430 EART  433 (435)
T ss_dssp             ----
T ss_pred             cCee
Confidence            7653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.7e-37  Score=298.77  Aligned_cols=293  Identities=15%  Similarity=0.209  Sum_probs=240.5

Q ss_pred             cccceeeccCC-C-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGSS-N-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~~-~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..+.++.|+++ + +++++.++.|++||+.+++...+..+.+|...|++++|+|++++|++|+.||.|++||+.+++...
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            35788899873 3 555668999999999998755678888999999999999999999999999999999998887554


Q ss_pred             Eec-CCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          220 TLR-GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       220 ~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      .+. ..|...|.+++|+  +.+|++|+.||.|++||++....   ......+|...|.+++|+|++++|++|+.||.|++
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  168 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  168 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence            432 2389999999994  78999999999999999987763   23344678999999999999999999999999999


Q ss_pred             EeCCCCCCC------------CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-C
Q 012679          294 WDRSMASSN------------SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-S  360 (458)
Q Consensus       294 wd~~~~~~~------------~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~  360 (458)
                      ||++.....            .....+..+..|...|.+++|+|++. ++++++  .|+.|++||+++++++..+..+ .
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~  245 (372)
T 1k8k_C          169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETL  245 (372)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCceeEEEccCCC
Confidence            997532110            01233677778999999999999765 555555  8999999999999999888764 5


Q ss_pred             CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC--cee--e------------------------------------EEE-
Q 012679          361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPS--MVK--M------------------------------------AEL-  399 (458)
Q Consensus       361 ~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~--~~~--~------------------------------------~~~-  399 (458)
                      .+.+++|+|++.++++  | .|+.|++|++.+  ++.  +                                    ..+ 
T Consensus       246 ~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (372)
T 1k8k_C          246 PLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  322 (372)
T ss_dssp             CEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             CeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence            8999999999987776  5 799999999987  421  0                                    223 


Q ss_pred             eCCCCcEEEEEEc-CCC---CEEEEEeCCCcEEEEecCCCCcccc
Q 012679          400 SGHTSRVLFMAQS-PDG---CTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       400 ~~h~~~V~~l~~s-pdg---~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      .+|...|++++|. ++|   .+|+||+.||.|++|++...++..+
T Consensus       323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~  367 (372)
T 1k8k_C          323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK  367 (372)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred             ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence            4899999999966 677   9999999999999999987665543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-36  Score=291.09  Aligned_cols=252  Identities=17%  Similarity=0.331  Sum_probs=223.7

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ..++.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.. |...|.+++|  ++.+|++|+.|+.|++||+
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            567889999999999999999999999999999999999999999887 9999999999  4789999999999999999


Q ss_pred             cCCC---eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          254 RVRD---HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       254 ~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      .+..   .....+.+|...|.++.|++++. +++++.|+.|++||+.++..      +..+.+|...|.+++|+|++ .+
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~------~~~~~~h~~~v~~~~~~~~~-~~  198 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPDT-RL  198 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEECTTS-SE
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE------EEEEcCCCCceEEEEECCCC-CE
Confidence            8754   34567789999999999998775 89999999999999988765      77888999999999999965 56


Q ss_pred             EEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEE
Q 012679          331 LATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVL  407 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~  407 (458)
                      +++++  .|+.|++||++++.++..+.. ...|.+++|+|+++.+++  |..|+.|++||+.+++.+..+..  +...|+
T Consensus       199 l~sg~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          199 FVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             EEEEe--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence            66666  899999999999999988864 567999999999999998  55899999999999988877753  335799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +++|+|+|++|++|+.||.|++||+........
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  307 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence            999999999999999999999999987765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.9e-37  Score=297.55  Aligned_cols=279  Identities=13%  Similarity=0.195  Sum_probs=228.2

Q ss_pred             cccceeeccCC---CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCcee
Q 012679          142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ..++++.|+++   .+++++.|+.|+|||+.+++........+|...|.+++|+| ++++|++|+.||.|++||+.+ ..
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence            45888999884   37888889999999999988766666567999999999999 789999999999999999986 44


Q ss_pred             eEEecC--CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-EEEEEECCCcEE
Q 012679          218 LRTLRG--GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-QLASGGNDNLLH  292 (458)
Q Consensus       218 ~~~~~~--~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~sg~~dg~i~  292 (458)
                      +..+..  .|...|.+++|  ++.+|++|+.||.|++||++ + ..+..+.+|...|.+++|+|+++ +|++|+.|+.|+
T Consensus       153 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  230 (383)
T 3ei3_B          153 IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK  230 (383)
T ss_dssp             EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence            555543  24588999999  47899999999999999994 3 34678889999999999999999 999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC------------
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG------------  359 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~------------  359 (458)
                      +||++......  ..+..+ +|...|.+++|+| ++. ++++++  .|+.|++||+++++....+..+            
T Consensus       231 iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  304 (383)
T 3ei3_B          231 LWDLRNIKDKN--SYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK  304 (383)
T ss_dssp             EEEGGGCCSTT--CEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred             EEeCCCCCccc--ceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEECCCCccccccccccccccccccceE
Confidence            99998744321  113444 6999999999999 655 455555  8999999999998876655421            


Q ss_pred             ------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          360 ------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       360 ------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                            ..+..++|+|++++    +|..|+.|+|||+.+++.+..+.+  |...+..++|+|+|++|++|+ ||.|+|||
T Consensus       305 ~~~~p~~~~~~~~~s~dg~~----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          305 ATWHPMYDLIVAGRYPDDQL----LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             CEECSSSSEEEEECBCCTTT----CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             EeccCCCCceEEEecCCccc----ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence                  23444666666666    266899999999999999999987  457788889999999999997 99999999


Q ss_pred             cCC
Q 012679          432 VFG  434 (458)
Q Consensus       432 ~~~  434 (458)
                      +.+
T Consensus       380 ~~~  382 (383)
T 3ei3_B          380 RED  382 (383)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-36  Score=311.31  Aligned_cols=268  Identities=28%  Similarity=0.515  Sum_probs=234.1

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+..+.|++  ..+++++.|+.|++||.....   +..+.+|...|.+++|+|+|++|++|+.||.|++||. +++.+..
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~  380 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  380 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe---eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence            466778876  457788899999999987654   5567889999999999999999999999999999995 5677788


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +.. |...|.+++|  ++.+|++++.|+.|++||.. + ..+..+.+|...|.+++|+||+++|++++.|+.|++||...
T Consensus       381 ~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~  457 (577)
T 2ymu_A          381 LTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG  457 (577)
T ss_dssp             EEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             ecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            876 9999999999  47899999999999999964 3 34678889999999999999999999999999999999643


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSS  377 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~  377 (458)
                       ..      +..+.+|...|.+++|+|++. ++++++  .|+.|++||. +++++..+.. ...|++++|+|++++|++ 
T Consensus       458 -~~------~~~~~~~~~~v~~~~~spd~~-~las~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-  525 (577)
T 2ymu_A          458 -QL------LQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS-  525 (577)
T ss_dssp             -CE------EEEEECCSSCEEEEEECTTSC-EEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE-
T ss_pred             -CE------EEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE-
Confidence             22      677889999999999999765 555555  8999999995 6788877764 578999999999999998 


Q ss_pred             ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                       +..|+.|+|||+ +++.+..+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus       526 -~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          526 -ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             448999999996 6788999999999999999999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-37  Score=300.86  Aligned_cols=276  Identities=15%  Similarity=0.290  Sum_probs=243.7

Q ss_pred             ccccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          141 DYYLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       141 d~~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      ...+.++.|+++  .+++++.++.|++|| .+++.  +..+..|...|++++|+|++++|++++.||.|++||+.+++.+
T Consensus       108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL--LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE--EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe--eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            346888999873  477888899999999 45554  6677889999999999999999999999999999999999999


Q ss_pred             EEecCCCccc---------------EEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679          219 RTLRGGHRSR---------------VGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL  282 (458)
Q Consensus       219 ~~~~~~~~~~---------------v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  282 (458)
                      ..+.. +...               +.+++|. +..+++++.+|.|++||++.... ...+..|...|.+++|+|++++|
T Consensus       185 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          185 QHFEL-KETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-TGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEECC-C---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-SEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEeec-cccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-eeeeccCCCceEEEEECCCCCEE
Confidence            88876 6555               8888884 67899999999999999997654 66778999999999999999999


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCC
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQ  361 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~  361 (458)
                      ++++.|+.|++||++....      +..+..|...|.+++|+|++  ++++++  .|+.|++||+.+++++..+.. ...
T Consensus       263 ~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNS------QNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             EEEETTSCEEEECSSSBSC------SEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCC
T ss_pred             EEEcCCCEEEEEECCCCcc------ceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCcc
Confidence            9999999999999988766      67778899999999999976  666666  899999999999999888875 678


Q ss_pred             eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--------------------eeEEEeCCCC--cEEEEEEcCCCCEEE
Q 012679          362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--------------------KMAELSGHTS--RVLFMAQSPDGCTVA  419 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--------------------~~~~~~~h~~--~V~~l~~spdg~~l~  419 (458)
                      +.+++|+|+++.+++  +..+|.|++||+.+++                    .+..+.+|..  .|++++|+|++++|+
T Consensus       333 i~~~~~s~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  410 (425)
T 1r5m_A          333 IFAGRISQDGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKIS  410 (425)
T ss_dssp             EEEEEECTTSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEE
T ss_pred             EEEEEEcCCCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEE
Confidence            999999999999998  4489999999999888                    8899999976  999999999999999


Q ss_pred             EEeCCCcEEEEecC
Q 012679          420 SAAADETLRFWNVF  433 (458)
Q Consensus       420 s~s~Dg~i~iW~~~  433 (458)
                      +++.||.|++|++.
T Consensus       411 ~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          411 VAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEESSSCCEEEECC
T ss_pred             EEecCceEEEEeec
Confidence            99999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.4e-37  Score=305.68  Aligned_cols=276  Identities=21%  Similarity=0.435  Sum_probs=238.3

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+.++.++++.+++++.||.|++||+.+++.  ...+.+|.+.|++++|  ++++|++|+.||.|++||+.+++.+..+.
T Consensus       135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  210 (435)
T 1p22_A          135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI  210 (435)
T ss_dssp             CEEEEECCSSEEEEEESSSCEEEEESSSCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             cEEEEEECCCEEEEEeCCCeEEEEeCCCCeE--EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            4778888888999999999999999999887  6778899999999999  78899999999999999999999999998


Q ss_pred             CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCee--EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI--VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      . |...|.+++|++..+++|+.||.|++||+++....  ...+.+|...|.+++|  ++++|++|+.||.|++||++++.
T Consensus       211 ~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~  287 (435)
T 1p22_A          211 H-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE  287 (435)
T ss_dssp             C-CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC
T ss_pred             C-CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc
Confidence            7 99999999999999999999999999999877643  2677899999999999  78999999999999999999876


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEec
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g  379 (458)
                      .      +..+.+|...|.+++|++   .++++++  .|+.|++||+++++++..+.. ...|.++.|  ++..+++  |
T Consensus       288 ~------~~~~~~~~~~v~~~~~~~---~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g  352 (435)
T 1p22_A          288 F------VRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--G  352 (435)
T ss_dssp             E------EEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--E
T ss_pred             E------EEEEcCCCCcEEEEEeCC---CEEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--E
Confidence            6      788889999999999953   5677766  899999999999999998874 567999988  6778877  5


Q ss_pred             CCCCcEEEEeCCCce---------eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          380 FTQNQLTLWKYPSMV---------KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       380 ~~d~~i~iwd~~~~~---------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      ..||.|++||+.++.         .+..+.+|.+.|++++|  ++.+|++|+.||+|++||+.+........
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  422 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP  422 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence            589999999997766         78889999999999999  78899999999999999998877655443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.1e-38  Score=302.41  Aligned_cols=279  Identities=17%  Similarity=0.234  Sum_probs=207.2

Q ss_pred             eeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEeCCCceeeE
Q 012679          147 LDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN------NCQVQLWDSTANRQLR  219 (458)
Q Consensus       147 ~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~~  219 (458)
                      ++.+..+ ++....+.....|++....      ...|...|++|+|+|||++||+|+.      ||.|++|+..++....
T Consensus        11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~   84 (357)
T 4g56_B           11 VDLGTENLYFQSNGSSKGSAWGRPVTA------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE   84 (357)
T ss_dssp             -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred             CCCCccceEEecCCCccccccCCCCCC------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence            4444433 4555556788999876433      2468999999999999999999997      7889999987765432


Q ss_pred             Eec---CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCee---EEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          220 TLR---GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHI---VETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       220 ~~~---~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      .+.   .+|...|.+++|. ...+++++.||.|++||+.+++..   .....+|...|.+++|+|++++|++|+.|+.|+
T Consensus        85 ~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~  164 (357)
T 4g56_B           85 SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK  164 (357)
T ss_dssp             GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            221   1388899999995 467788899999999999876532   234458999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe---CCCCeEEEEEcC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNK  369 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~---~~~~v~~~~~s~  369 (458)
                      +||++++..      +..+..|...|.+++|+|++..++++++  .|+.|++||+++++++..+.   ....+.+++|+|
T Consensus       165 iwd~~~~~~------~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp  236 (357)
T 4g56_B          165 VWDLSQKAV------LKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP  236 (357)
T ss_dssp             EEETTTTEE------EEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred             EEECCCCcE------EEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence            999988765      7888999999999999999888888877  89999999999998876654   345699999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCcccc
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG-CTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ++..++++ |..|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+..++....
T Consensus       237 ~~~~~la~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          237 EKDDTFAC-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             TSTTEEEE-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cccceEEE-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            87655544 5589999999999999999999999999999999987 5799999999999999987765443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-37  Score=298.48  Aligned_cols=283  Identities=16%  Similarity=0.280  Sum_probs=233.4

Q ss_pred             cccceeeccC------CCeEEEEcCCEEEEEECCCCCeeeE-EEe--cCCCCCEEEEEEcCC----CCEEEEEecCCeEE
Q 012679          142 YYLNLLDWGS------SNVLAIALGSTVYLWDASDGTTSEL-VTV--DDENGPVTSVNWAPD----GRHIAIGLNNCQVQ  208 (458)
Q Consensus       142 ~~~~~~~~~~------~~~la~~~d~~v~iwd~~~~~~~~~-~~~--~~h~~~V~~v~~s~~----g~~la~g~~dg~v~  208 (458)
                      ..+.+++|++      ..+++++.++.|++||+.+++.... ...  ..|...|++++|+|+    |.+|++|+.||.|+
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~   98 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR   98 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence            4678888985      2388888899999999997665222 222  236788999999998    67999999999999


Q ss_pred             EEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEE---cccccceEeEEEcCCCCEE
Q 012679          209 LWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETY---RGHNQEVCGLKWSASGQQL  282 (458)
Q Consensus       209 iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~h~~~v~~l~~spd~~~l  282 (458)
                      +||+.+++.+..+.. |...|.+++|+   +.+|++|+.||.|++||++++.. ...+   .+|...|.+++|+|++++|
T Consensus        99 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l  176 (366)
T 3k26_A           99 IINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGEKI  176 (366)
T ss_dssp             EECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred             EEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCCEE
Confidence            999999999999987 99999999994   58999999999999999987764 5555   6899999999999999999


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcc----------------------eeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVT----------------------QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR  340 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~----------------------~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~  340 (458)
                      ++++.||.|++||++........                      ........|...|.+++|+   ..++++++  .|+
T Consensus       177 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~--~d~  251 (366)
T 3k26_A          177 MSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKS--CEN  251 (366)
T ss_dssp             EEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEEC--SSS
T ss_pred             EEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEe--cCC
Confidence            99999999999999875431000                      0012333489999999998   34777776  899


Q ss_pred             eEEEEECCCCCe--------------eEEEe-CCCCeEEEEEcCC--CCeEEEEecCCCCcEEEEeCCCce----eeEEE
Q 012679          341 CIKFWNTHTGAC--------------LNSVD-TGSQVCALLWNKN--ERELLSSHGFTQNQLTLWKYPSMV----KMAEL  399 (458)
Q Consensus       341 ~i~lwd~~~~~~--------------~~~~~-~~~~v~~~~~s~~--~~~l~~~~g~~d~~i~iwd~~~~~----~~~~~  399 (458)
                      .|++||+.++..              +..+. +...|.+++|+|+  +++|++  |..||.|++||+.+++    ....+
T Consensus       252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred             EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccccceEE
Confidence            999999988754              44444 3567999999999  999988  5689999999999875    44477


Q ss_pred             eCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          400 SGH--TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       400 ~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      .+|  ...|++++|+|++++|++++.||.|++||+.
T Consensus       330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            887  7899999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-36  Score=285.51  Aligned_cols=249  Identities=18%  Similarity=0.312  Sum_probs=209.4

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC--ceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEE
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA--NRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIIN  250 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~--~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~v  250 (458)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+..  .+.+..+.+ |...|.+++|.    +.+|++|+.||+|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            45678999999999999999999999999999999974  467778887 99999999994    689999999999999


Q ss_pred             EEccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          251 NDVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       251 wd~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      ||++++. ..+..+.+|...|.+++|+|+  +.+|++|+.|+.|++||++......    ...+.+|...|.+++|+|++
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~----~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS----PIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC----CEEEECCSSCEEEEEECCCC
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee----eeeeecccCccceEeecCCc
Confidence            9998764 235667889999999999997  8999999999999999998753211    34567899999999999963


Q ss_pred             ------------CcEEEEeCCCCCCeEEEEECCCCC----eeEEEe-CCCCeEEEEEcCCC---CeEEEEecCCCCcEEE
Q 012679          328 ------------SNLLATGGGGGDRCIKFWNTHTGA----CLNSVD-TGSQVCALLWNKNE---RELLSSHGFTQNQLTL  387 (458)
Q Consensus       328 ------------~~ll~s~~g~~d~~i~lwd~~~~~----~~~~~~-~~~~v~~~~~s~~~---~~l~~~~g~~d~~i~i  387 (458)
                                  ..+|++++  .|+.|++||++++.    ....+. +...|.+++|+|++   .+|++  |..|+.|+|
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~i  233 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCII  233 (297)
T ss_dssp             ------------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEE
T ss_pred             ccccccCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEE
Confidence                        35788877  99999999998876    445554 45679999999995   56666  558999999


Q ss_pred             EeCCCce---eeEEE--eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          388 WKYPSMV---KMAEL--SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       388 wd~~~~~---~~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ||+.+..   ....+  .+|...|.+++|+|+|++|++++.||+|+||+...
T Consensus       234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            9987642   12233  46888999999999999999999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.3e-37  Score=293.51  Aligned_cols=282  Identities=15%  Similarity=0.235  Sum_probs=233.4

Q ss_pred             ccccceeeccCC--CeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC---CCEEEEEecCCeEEEEe
Q 012679          141 DYYLNLLDWGSS--NVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD---GRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       141 d~~~~~~~~~~~--~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~---g~~la~g~~dg~v~iwd  211 (458)
                      ...+.++.|+++  .+++++.    |+.|++||+.+++....... +|...|++++|+|+   |++|++|+.||.|++||
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd   96 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN   96 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence            346889999983  3555552    89999999999887544444 57899999999998   79999999999999999


Q ss_pred             CCCce-eeEEecCCCcccEEEEEe--------CCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc----ceEeEE----
Q 012679          212 STANR-QLRTLRGGHRSRVGSLAW--------NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ----EVCGLK----  274 (458)
Q Consensus       212 ~~~~~-~~~~~~~~~~~~v~~l~~--------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~----~v~~l~----  274 (458)
                      +.+++ .+..+.. |...|.++.|        ++.+|++|+.||.|++||++.....+..+..|..    .|.++.    
T Consensus        97 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A           97 LEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             TTSCSSCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             CCCCCccEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence            99988 7888876 9999999965        3679999999999999999987755667765554    788888    


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC---CCCcEEEEeCCCCCCeEEEEECCCCC
Q 012679          275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTGA  351 (458)
Q Consensus       275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~ll~s~~g~~d~~i~lwd~~~~~  351 (458)
                      |+|++++|++++.||.|++||++....       .....|...|.+++|+|   ++.. +++++  .|+.|++||+++++
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMAL-------RWETNIKNGVCSLEFDRKDISMNK-LVATS--LEGKFHVFDMRTQH  245 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEESCSSSSCCE-EEEEE--STTEEEEEEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCce-------eeecCCCCceEEEEcCCCCCCCCE-EEEEC--CCCeEEEEeCcCCC
Confidence            788999999999999999999987653       33456889999999999   5554 55554  89999999999877


Q ss_pred             eeEEE------eCCCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCCc-------------------eeeEEEeCCCCc
Q 012679          352 CLNSV------DTGSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPSM-------------------VKMAELSGHTSR  405 (458)
Q Consensus       352 ~~~~~------~~~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~-------------------~~~~~~~~h~~~  405 (458)
                      .+..+      .+...|.+++|+|++. ++++  |..||.|++||+...                   +.+..+.+|...
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  323 (357)
T 3i2n_A          246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP  323 (357)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred             cccceeeeccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence            65544      3567899999999999 5555  458999999998743                   467788999999


Q ss_pred             EEEEEEcCCCCEEE-EEeCCCcEEEEecCCCC
Q 012679          406 VLFMAQSPDGCTVA-SAAADETLRFWNVFGAP  436 (458)
Q Consensus       406 V~~l~~spdg~~l~-s~s~Dg~i~iW~~~~~~  436 (458)
                      |++++|+|+|++|+ +++.||.|++|++....
T Consensus       324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            99999999999998 89999999999997654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-35  Score=279.69  Aligned_cols=255  Identities=22%  Similarity=0.410  Sum_probs=224.1

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN  251 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw  251 (458)
                      .....+.+|...|++++|+|++++|++|+.||.|++||+.+++....+.. |...|.+++|+  +++|++|+.||.|++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            34667889999999999999999999999999999999999999888887 99999999994  6899999999999999


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      |++++.. +..+.+|...|.+++|+|++++|++|+.|+.|++||++++..      +..+..|...|.+++|+|++. ++
T Consensus        93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~-~l  164 (312)
T 4ery_A           93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------LKTLPAHSDPVSAVHFNRDGS-LI  164 (312)
T ss_dssp             ETTTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE------EEEECCCSSCEEEEEECTTSS-EE
T ss_pred             ECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE------EEEecCCCCcEEEEEEcCCCC-EE
Confidence            9997764 678889999999999999999999999999999999988765      778889999999999999755 55


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE--
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL--  407 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~--  407 (458)
                      ++++  .|+.|++||+++++.+..+..  ...+..++|+|+++++++  +..|+.|++||+.+++.+..+.+|...+.  
T Consensus       165 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  240 (312)
T 4ery_A          165 VSSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI  240 (312)
T ss_dssp             EEEE--TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE--EETTTEEEEEETTTTEEEEEECSSCCSSSCC
T ss_pred             EEEe--CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE--EcCCCeEEEEECCCCcEEEEEEecCCceEEE
Confidence            5655  899999999999998887743  457999999999999998  44899999999999999999998876532  


Q ss_pred             -EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          408 -FMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       408 -~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                       .....+++.+|++|+.||.|++||+..+..+...
T Consensus       241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence             2333468899999999999999999887765443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-35  Score=286.81  Aligned_cols=254  Identities=19%  Similarity=0.308  Sum_probs=225.0

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+.+|.+.|++++|+|++++||+|+.||+|+|||..+++....+.. |...|.+++|  ++..|++|+.|+.+.+|++
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            567789999999999999999999999999999999999998888887 8899999999  4799999999999999998


Q ss_pred             cCCC-----eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC-
Q 012679          254 RVRD-----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-  327 (458)
Q Consensus       254 ~~~~-----~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-  327 (458)
                      ....     .....+.+|...|.++.|+|++..|++|+.|++|++||++++..      +..+.+|...|.+++|+|.. 
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL------LQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------EEEEECCSSCEEEEEECCCSS
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE------EEEEcCCCCCeEEEEEEeCCC
Confidence            6432     23456778999999999999999999999999999999988766      78889999999999999863 


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--CC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--TS  404 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--~~  404 (458)
                      ..++++++  .|+.|++||+++++++..+.. ...|.+++|+|++..+++  |..|+.|++||+...+.+..+..+  ..
T Consensus       210 g~~l~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          210 GNTFVSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS--GSDDATCRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             CCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             CCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence            46788876  999999999999999988864 568999999999999988  458999999999998887777644  35


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          405 RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       405 ~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      .+.+++|+|+|.+|++|+.|++|++||+..+..+..
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  321 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI  321 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE
Confidence            789999999999999999999999999987765543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=283.75  Aligned_cols=256  Identities=22%  Similarity=0.389  Sum_probs=214.4

Q ss_pred             eeeEEEecCCCC-CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee--EEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679          173 TSELVTVDDENG-PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL--RTLRGGHRSRVGSLAWN--NHILTTGGMDGL  247 (458)
Q Consensus       173 ~~~~~~~~~h~~-~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  247 (458)
                      ...+.++.+|.+ .|.+++|+|+|++||+|+.||.|+|||+.++...  ..+..+|...|.+++|+  +.+|++|+.|+.
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            345677889987 9999999999999999999999999999887643  23334599999999994  789999999999


Q ss_pred             EEEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          248 IINNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       248 i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      |++||+.... ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+.....   ...+..+..|...|.+++|+|+
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---YECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---EEEEEEECCCCSCEEEEEECSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---eEEEEEecCcCCCeEEEEECCC
Confidence            9999998764 34678889999999999999999999999999999999987643   2335677889999999999997


Q ss_pred             CCcEEEEeCCCCCCeEEEEECCCCCe--eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-----------
Q 012679          327 QSNLLATGGGGGDRCIKFWNTHTGAC--LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-----------  392 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-----------  392 (458)
                      +. ++++++  .|+.|++||..++..  ...+. +...|.+++|+|++++|++  |..|+.|+||+...           
T Consensus       162 ~~-~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~~v~iW~~~~~~~~~~~~~~~  236 (345)
T 3fm0_A          162 QE-LLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNEQGVACSG  236 (345)
T ss_dssp             SS-CEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEEEECTTCTTCCCCC-
T ss_pred             CC-EEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCCeEEEeccccCCCCccceeec
Confidence            65 555555  899999999988753  34443 4578999999999999998  55899999999622           


Q ss_pred             ----ceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          393 ----MVKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       393 ----~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                          ...+..+.+ |...|.+++|+|++..|++++.|+.|++|++....
T Consensus       237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             --CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             cCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence                234555655 88999999999999999999999999999987653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-37  Score=309.73  Aligned_cols=270  Identities=11%  Similarity=0.107  Sum_probs=211.7

Q ss_pred             eEEEEcCCEEEEEECCCCCeee--EEEecCCCCCEEEEEEcCC------CCEEEEEecCCeEEEEeCCCcee--------
Q 012679          154 VLAIALGSTVYLWDASDGTTSE--LVTVDDENGPVTSVNWAPD------GRHIAIGLNNCQVQLWDSTANRQ--------  217 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~--~~~~~~h~~~V~~v~~s~~------g~~la~g~~dg~v~iwd~~~~~~--------  217 (458)
                      +++++.|++|+|||+.+++...  ...+.+|.+.|.+++|+|+      +.+||+|+.||+|+|||+.++..        
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            3445678899999998876422  2345677889999999996      57999999999999999987642        


Q ss_pred             ---eEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE--EEcCCC-CEEEEEECCCc
Q 012679          218 ---LRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL--KWSASG-QQLASGGNDNL  290 (458)
Q Consensus       218 ---~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l--~~spd~-~~l~sg~~dg~  290 (458)
                         ...+.+ |...|.+++|+ +..|++|+.||+|++||++++......+.+|...|.++  .|+|++ .+||+|+.|++
T Consensus       256 ~~p~~~l~~-h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t  334 (524)
T 2j04_B          256 EKPSLTLSL-ADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY  334 (524)
T ss_dssp             CSCSEEECC-TTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred             cCceEEEEc-CCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence               235555 99999999995 57999999999999999997765566788999999999  578888 89999999999


Q ss_pred             EEEEeCCCCCCCCcceeeeeeccccc--ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEEEE
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTS--AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCALLW  367 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~~~  367 (458)
                      |+|||+++...      ...+.+|..  .|.+++|+|++.. +++++  .|++|++||++++.++..+ .+...|.+++|
T Consensus       335 vklWD~~~~~~------~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~  405 (524)
T 2j04_B          335 FYIFNPKDIAT------TKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGV  405 (524)
T ss_dssp             EEEECGGGHHH------HCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred             EEEEECCCCCc------ccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEECcccccceeeecCCCceEEEEe
Confidence            99999987654      444555543  5889999998665 55555  7999999999999887665 45678999999


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeCCC--------------------------------------------ceeeEEEeCCC
Q 012679          368 NKNERELLSSHGFTQNQLTLWKYPS--------------------------------------------MVKMAELSGHT  403 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~~~--------------------------------------------~~~~~~~~~h~  403 (458)
                      +|+++.|++  |+.|++|++||+..                                            +..+..+.+|.
T Consensus       406 Sp~g~~l~S--gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~  483 (524)
T 2j04_B          406 SRLHPMVLA--GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHG  483 (524)
T ss_dssp             CSSCCBCEE--EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CC
T ss_pred             CCCCCeEEE--EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCC
Confidence            999999988  55899999887421                                            11233456788


Q ss_pred             CcEEEEEEcCCC---CEEEEEeCCCcEEEEecCCC
Q 012679          404 SRVLFMAQSPDG---CTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       404 ~~V~~l~~spdg---~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ..|.+++|+|++   .+|++|+.||+|+||++...
T Consensus       484 ~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          484 INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             ceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            999999999995   49999999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.3e-37  Score=297.53  Aligned_cols=254  Identities=15%  Similarity=0.324  Sum_probs=221.6

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+.. |...|.+++|  ++.+|++|+.|+.|++||+
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            667899999999999999999999999999999999999999999987 9999999999  4789999999999999998


Q ss_pred             cCCC------eeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-----cccccceeEE
Q 012679          254 RVRD------HIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-----EEHTSAVKAI  321 (458)
Q Consensus       254 ~~~~------~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v~~l  321 (458)
                      ....      .....+.+|...|.++.|+|+ +..|++|+.|++|++||+.++..      +..+     .+|...|.++
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~------~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR------ISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE------EEEECCCSSSSCCSCEEEE
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE------EEEeecccCCCCccCeEEE
Confidence            7532      124567799999999999996 55799999999999999998765      4433     5789999999


Q ss_pred             EecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          322 AWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      +|++....++++|+  .|+.|++||++ .+.++..+. +...|.+++|+|++..+++  |..|+.|++||+.+++.+..+
T Consensus       212 ~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          212 SINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEEEE
T ss_pred             EeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEEEe
Confidence            99987778888887  99999999998 456676665 4578999999999999998  558999999999999998888


Q ss_pred             eCCCC-------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          400 SGHTS-------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       400 ~~h~~-------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ..+..       .|++++|+|+|++|++|+.||.|++||+..++....
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~  335 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN  335 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE
Confidence            65532       489999999999999999999999999987765544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.3e-35  Score=292.73  Aligned_cols=278  Identities=19%  Similarity=0.296  Sum_probs=242.0

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      +.++.++++.+++++.||.|++||+.+++.  +..+.+|.+.|++++|+|++ +|++|+.||.|++||+.+++.+..+..
T Consensus       125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          125 ITCLQFEDNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEECCCEEEEEcCCCcEEEEECCCCcE--EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            567888888999999999999999999876  77788999999999999988 999999999999999999999999987


Q ss_pred             CCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCee----------------------EEEEcccccceEeEEEcC
Q 012679          224 GHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHI----------------------VETYRGHNQEVCGLKWSA  277 (458)
Q Consensus       224 ~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~----------------------~~~~~~h~~~v~~l~~sp  277 (458)
                       |...|.+++|.    +.+|++|+.||.|++||++.....                      ...+.+|...|.++  ++
T Consensus       202 -h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  278 (464)
T 3v7d_B          202 -HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG  278 (464)
T ss_dssp             -CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE
T ss_pred             -CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC
Confidence             99999999994    478999999999999999876532                      45677899998887  57


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      ++++|++|+.||.|++||+++...      +..+.+|...|.+++|+|++. .+++++  .|+.|++||+.+++++..+.
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~-~l~sg~--~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQMKC------LYILSGHTDRIYSTIYDHERK-RCISAS--MDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcE------EEEecCCCCCEEEEEEcCCCC-EEEEEe--CCCcEEEEECCCCcEEEEEe
Confidence            899999999999999999987765      788889999999999999755 455555  89999999999999999886


Q ss_pred             C-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          358 T-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       358 ~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      . ...|.++.|+  +..+++  |..||.|++||+.++....... |...+..++|+|++++|++|+ ||.|++||+.+++
T Consensus       350 ~h~~~v~~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          350 GHTALVGLLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             CCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             CCCCcEEEEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence            4 5679999997  467777  4589999999999988776664 667788899999999999998 9999999999988


Q ss_pred             cccccC
Q 012679          437 QVISKS  442 (458)
Q Consensus       437 ~~~~~~  442 (458)
                      .+.+..
T Consensus       424 ~~~~~~  429 (464)
T 3v7d_B          424 LVHANI  429 (464)
T ss_dssp             EEESCT
T ss_pred             EEehhh
Confidence            776533

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8e-35  Score=298.63  Aligned_cols=271  Identities=28%  Similarity=0.510  Sum_probs=233.1

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..++.+.|++  ..+++++.|+.|++||... +.  +..+.+|...|.+++|+|++++|++++.||.|++||.... .+.
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~--~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~  338 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QL--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ  338 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cE--EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE
Confidence            3577888877  3578888999999999753 43  5677899999999999999999999999999999997654 455


Q ss_pred             EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.. |...|.+++|+  +..|++|+.||.|++||.. + ..+..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus       339 ~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~  415 (577)
T 2ymu_A          339 TLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  415 (577)
T ss_dssp             EECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            6665 99999999994  7899999999999999964 3 3467888999999999999999999999999999999954


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLS  376 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  376 (458)
                       +..      +..+.+|...|.+++|+|++. ++++++  .|+.|++||. +++.+..+. +...|.+++|+|++++|++
T Consensus       416 -~~~------~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las  484 (577)
T 2ymu_A          416 -GQL------LQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS  484 (577)
T ss_dssp             -CCE------EEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred             -CCE------EEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence             222      677889999999999999765 555555  8999999996 456666654 5678999999999999998


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +  ..|+.|++||. +++.+..+.+|...|++++|+|||++|++++.||.|++||..
T Consensus       485 ~--~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          485 A--SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             E--ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             E--eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            4  48999999995 678889999999999999999999999999999999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.6e-36  Score=293.21  Aligned_cols=275  Identities=14%  Similarity=0.181  Sum_probs=225.7

Q ss_pred             eeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          146 LLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       146 ~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .+.|++  ..+++++.|+.|++||+.+++.  ...+..| ..+....|++++++|++|+.||.|++||+.+++....+..
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEET--TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccce--eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            455554  7799999999999999987654  3334444 4455557899999999999999999999999988887776


Q ss_pred             CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          224 GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       224 ~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                       |...|.+++|+  +.+|++|+.||.|++||++++.. +..+.+|...|.+++|+|++++|++|+.||.|++||++++..
T Consensus       138 -h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          138 -HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             -SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             -ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence             99999999994  68999999999999999987765 577889999999999999999999999999999999988765


Q ss_pred             CCcceeeeeecc---c---------------------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          302 NSVTQWLHRLEE---H---------------------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       302 ~~~~~~~~~~~~---h---------------------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                            +..+..   |                     ...+.+++|+|++. ++++++  .|+.|++||+++++.+..+.
T Consensus       216 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          216 ------IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGH--VSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             ------EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEE--TTSCEEEEETTTCCEEEEEC
T ss_pred             ------eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEc--CCCeEEEEECCCCceeEEcc
Confidence                  444443   2                     34455566677644 556655  89999999999999888775


Q ss_pred             C--CCCeEEEEEcCCCC-eEEEEecCCCCcEEEEeCCCcee-eEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          358 T--GSQVCALLWNKNER-ELLSSHGFTQNQLTLWKYPSMVK-MAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       358 ~--~~~v~~~~~s~~~~-~l~~~~g~~d~~i~iwd~~~~~~-~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      .  ...+.+++|+|++. ++++  |..||.|++||+.+++. +..+.+ |...|.++.+ +++.+|++++.||.|++|++
T Consensus       287 ~~~~~~v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          287 SKFTCSCNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             CTTSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred             cccCCCceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence            4  46799999999999 7776  55899999999998754 777776 6677888755 57889999999999999999


Q ss_pred             CCCCc
Q 012679          433 FGAPQ  437 (458)
Q Consensus       433 ~~~~~  437 (458)
                      .....
T Consensus       364 ~~~~~  368 (420)
T 3vl1_A          364 SDPES  368 (420)
T ss_dssp             CCTTC
T ss_pred             cCCCC
Confidence            87543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.8e-35  Score=281.68  Aligned_cols=283  Identities=17%  Similarity=0.174  Sum_probs=235.1

Q ss_pred             ccceeeccC-CCeEEE-EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE-
Q 012679          143 YLNLLDWGS-SNVLAI-ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR-  219 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~-~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~-  219 (458)
                      .+..++|++ +.++++ ..++.+.+|.....  .......+|...|++++|+|++++|++++ ||.|++||+.+++... 
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~   87 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP   87 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred             ceeEEEECCCCCEEEeecCCCcEeccccCCc--cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence            356678877 444444 44555666644432  22444457999999999999999999998 9999999998775332 


Q ss_pred             --Eec-CCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          220 --TLR-GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       220 --~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                        .+. ..|...|.+++|+  +.+|++++.||.|++||++.... ....+..|...|.+++|+|++++|++++.||.|++
T Consensus        88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~  167 (337)
T 1gxr_A           88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV  167 (337)
T ss_dssp             SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence              222 1389999999995  68999999999999999987653 35667789999999999999999999999999999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE  373 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  373 (458)
                      ||+++...      +..+..|...|.+++|+|++. .+++++  .|+.|++||+++++.+..+.....+.+++|+|+++.
T Consensus       168 ~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          168 WDLHNQTL------VRQFQGHTDGASCIDISNDGT-KLWTGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             EETTTTEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred             EeCCCCce------eeeeecccCceEEEEECCCCC-EEEEEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCE
Confidence            99988755      777888999999999999765 455554  899999999999999999999999999999999999


Q ss_pred             EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +++  +..++.|++||+.+.+.. .+..|...|.+++|+|++++|++++.||.|++|++..+.....
T Consensus       239 l~~--~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          239 LAV--GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEE--EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEE--EcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence            998  458999999999988754 6778999999999999999999999999999999988776643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-37  Score=296.36  Aligned_cols=282  Identities=15%  Similarity=0.217  Sum_probs=215.5

Q ss_pred             ccceeeccC-C-CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---e
Q 012679          143 YLNLLDWGS-S-NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---Q  217 (458)
Q Consensus       143 ~~~~~~~~~-~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~  217 (458)
                      .+++++|++ + .+++++.|+.|++||+.++....+..+.+|...|++++|+|++++|++|+.||.|++||+.+++   .
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            578889987 3 3566668999999999988545577888999999999999999999999999999999999887   5


Q ss_pred             eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe--eEEEEcc-cccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH--IVETYRG-HNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~-h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ...+.. |...|.+++|+  +.+|++|+.|+.|++||++....  ....+.+ |...|.+++|+|++++|++|+.|+.|+
T Consensus        93 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~  171 (377)
T 3dwl_C           93 TLVLLR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY  171 (377)
T ss_dssp             EEECCC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred             eeEecc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence            556665 99999999994  68999999999999999987753  3566777 999999999999999999999999999


Q ss_pred             EEeCCCCCCCC------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe----eEEE
Q 012679          293 IWDRSMASSNS------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC----LNSV  356 (458)
Q Consensus       293 iwd~~~~~~~~------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~----~~~~  356 (458)
                      +||+.......            ....+..+ .|...|.+++|+|++..+ ++++  .|+.|++||+.+++.    +..+
T Consensus       172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l-~~~~--~d~~i~iwd~~~~~~~~~~~~~~  247 (377)
T 3dwl_C          172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNAL-AYAG--HDSSVTIAYPSAPEQPPRALITV  247 (377)
T ss_dssp             EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCE-EEEE--TTTEEC-CEECSTTSCEEECCCE
T ss_pred             EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEE-EEEe--CCCcEEEEECCCCCCcceeeEee
Confidence            99986433111            12335556 899999999999986655 4444  899999999999987    5555


Q ss_pred             eC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce---------------------------------------ee
Q 012679          357 DT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV---------------------------------------KM  396 (458)
Q Consensus       357 ~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~---------------------------------------~~  396 (458)
                      .. ...|.+++|+|++++|++  |..+ .+.+|+.....                                       ..
T Consensus       248 ~~~~~~v~~~~~s~~~~~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (377)
T 3dwl_C          248 KLSQLPLRSLLWANESAIVAA--GYNY-SPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF  324 (377)
T ss_dssp             ECSSSCEEEEEEEETTEEEEE--ESSS-SEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred             cCCCCceEEEEEcCCCCEEEE--EcCC-cEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence            44 567999999999998877  4344 45577764211                                       00


Q ss_pred             EE-------------EeCCCCcEEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q 012679          397 AE-------------LSGHTSRVLFMAQSPDG-C---TVASAAADETLRFWNV  432 (458)
Q Consensus       397 ~~-------------~~~h~~~V~~l~~spdg-~---~l~s~s~Dg~i~iW~~  432 (458)
                      ..             ...|...|+++++.+.. .   .|+|||.||.|++||+
T Consensus       325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            00             01399999999976543 3   6999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-36  Score=297.51  Aligned_cols=277  Identities=12%  Similarity=0.216  Sum_probs=226.1

Q ss_pred             cccceeeccC-C--CeEEEEcCCEEEEEECCC---CCee-eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC-
Q 012679          142 YYLNLLDWGS-S--NVLAIALGSTVYLWDASD---GTTS-ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST-  213 (458)
Q Consensus       142 ~~~~~~~~~~-~--~~la~~~d~~v~iwd~~~---~~~~-~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~-  213 (458)
                      ..+++++|++ +  .+++++.|+.|+|||+.+   +... ....+ +|...|++++|+|++++|++|+.||.|++||+. 
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~  142 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH  142 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence            4688899988 3  488888999999999876   4321 13333 489999999999999999999999999999995 


Q ss_pred             --CceeeEEecC---------C--CcccEEEEEe----CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc--cccceEeEE
Q 012679          214 --ANRQLRTLRG---------G--HRSRVGSLAW----NNHILTTGGMDGLIINNDVRVRDHIVETYRG--HNQEVCGLK  274 (458)
Q Consensus       214 --~~~~~~~~~~---------~--~~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~  274 (458)
                        +++.+..+..         .  +...+.++.+    ++.+|++|+.||.|++||+++... +..+.+  |...|++++
T Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~  221 (437)
T 3gre_A          143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-LQIIENSPRHGAVSSIC  221 (437)
T ss_dssp             EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-EEEEECCGGGCCEEEEE
T ss_pred             ccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-eEEEccCCCCCceEEEE
Confidence              4444433321         1  4556677764    378999999999999999998765 566766  899999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCC---CCcEEEEeCCCCCCeEEEEECCCC
Q 012679          275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPF---QSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~---~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      |+|++++|++|+.||.|++||++.+..      +..+. .|...|.+++|+|.   ...++++++  .|+.|++||++++
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~  293 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDIRFNVL------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKG  293 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTTTEE------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTT
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCccE------EEEEecCCCCceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCC
Confidence            999999999999999999999998654      56654 78889999988763   345777776  9999999999999


Q ss_pred             CeeEEEeC---------------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--
Q 012679          351 ACLNSVDT---------------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--  401 (458)
Q Consensus       351 ~~~~~~~~---------------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--  401 (458)
                      +++..+..                           ...|.+++|+ ++++|++  |..|+.|++||+.+++.+..+.+  
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEeccc
Confidence            98887762                           2348889999 7777777  55899999999999888777765  


Q ss_pred             -----------------------------------CCCcEEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 012679          402 -----------------------------------HTSRVLFMAQSPD--GCTVASAAADETLRFWN  431 (458)
Q Consensus       402 -----------------------------------h~~~V~~l~~spd--g~~l~s~s~Dg~i~iW~  431 (458)
                                                         |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                               8899999999998  88999999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=297.93  Aligned_cols=285  Identities=17%  Similarity=0.297  Sum_probs=234.4

Q ss_pred             ccccceeeccC--CCeEEEEcCCEEEEEECCCC--CeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCc
Q 012679          141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDG--TTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~--~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ...++++.|++  ..+++++.|+.|++||+.+.  ....+..+.+|...|++++|+|+ +++|++|+.||.|++||+.++
T Consensus        67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            34578899987  45777888999999999872  11247778899999999999998 899999999999999999987


Q ss_pred             e------eeEEe--cCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEccc------ccceEeEEEcCC
Q 012679          216 R------QLRTL--RGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGH------NQEVCGLKWSAS  278 (458)
Q Consensus       216 ~------~~~~~--~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h------~~~v~~l~~spd  278 (458)
                      +      ....+  ...|...|.+++|+   +.+|++++.||.|++||+++... +..+..|      ...|.+++|+|+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-ceEEeccccccccCCceEEEEECCC
Confidence            6      33332  12389999999995   57999999999999999987664 5556555      789999999999


Q ss_pred             C-CEEEEEECCC---cEEEEeCCCCCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          279 G-QQLASGGNDN---LLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       279 ~-~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      + .+|++++.|+   .|++||++.....     +..+. +|...|.+++|+|....++++++  .|+.|++||+.+++++
T Consensus       226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~--~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          226 NSTRVATATGSDNDPSILIWDLRNANTP-----LQTLNQGHQKGILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAEQL  298 (416)
T ss_dssp             CTTEEEEEECCSSSCCCCEEETTSTTSC-----SBCCCSCCSSCEEEEEECSSCSSCEEEEE--SSSEEEEECSSSCCEE
T ss_pred             CCCEEEEEECCCCCceEEEEeCCCCCCC-----cEEeecCccCceeEEEeCCCCCCeEEEEe--CCCCEEEeeCCCCccc
Confidence            7 6899999999   9999999886321     55666 89999999999995456666665  8999999999999999


Q ss_pred             EEEeC-CCCeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEe-------------------------------
Q 012679          354 NSVDT-GSQVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELS-------------------------------  400 (458)
Q Consensus       354 ~~~~~-~~~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-------------------------------  400 (458)
                      ..+.. ...|.+++|+|++ ..+++  +..|+.|++|++.+........                               
T Consensus       299 ~~~~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          299 SQFPARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             EEEECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             eeecCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            88865 5679999999999 66666  5589999999998765432221                               


Q ss_pred             ----CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          401 ----GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       401 ----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                          .|...+.+++|+|+|++|++++.||+|+||++...
T Consensus       377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                16677889999999999999999999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.7e-35  Score=276.33  Aligned_cols=250  Identities=20%  Similarity=0.272  Sum_probs=216.2

Q ss_pred             eeEEEecCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCC-----ceeeEEecCCCcccEEEEEe--CCCeEEEEeCC
Q 012679          174 SELVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTA-----NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD  245 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~-----~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d  245 (458)
                      ....++.+|.+.|++++|+|++ ++|++|+.||+|++||+..     +..+..+.+ |...|.+++|  ++.+|++|+.|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEEeCC
Confidence            3456788999999999999965 8999999999999999864     345667776 9999999999  47899999999


Q ss_pred             CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecC
Q 012679          246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      ++|++||++++.. +..+.+|...|.+++|+|++.+|++|+.|++|++||++.. .      +..+.+|...|.+++|+|
T Consensus        87 ~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~------~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           87 KTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-C------LATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             SEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-E------EEEECCCSSCEEEEEECC
T ss_pred             CEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-e------EEEEeccCCcEEEEEEcc
Confidence            9999999997764 6788999999999999999999999999999999998643 2      677889999999999999


Q ss_pred             CC-----CcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          326 FQ-----SNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       326 ~~-----~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      ..     ..++++++  .|+.|++||+++++....+. +...|.+++|+|++++|++  |..|+.|+|||+.+++.+..+
T Consensus       159 ~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          159 NEKADDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS--AGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             C------CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCcEEEEe
Confidence            63     34677776  99999999999998887775 4678999999999999998  558999999999999999998


Q ss_pred             eCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          400 SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       400 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      ..+ ..|.+++|+|++.+|++++.+ .+++|++......
T Consensus       235 ~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~  271 (319)
T 3frx_A          235 SAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV  271 (319)
T ss_dssp             ECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEE
T ss_pred             cCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee
Confidence            754 679999999999999988765 5999999765433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.5e-36  Score=285.58  Aligned_cols=249  Identities=18%  Similarity=0.298  Sum_probs=203.1

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEE
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINN  251 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vw  251 (458)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+ |...|.+++|.    +.+|++|+.|++|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            346899999999999999999999999999999998775  4566776 99999999994    6899999999999999


Q ss_pred             EccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC-
Q 012679          252 DVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ-  327 (458)
Q Consensus       252 d~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-  327 (458)
                      |++++. .....+.+|...|.+++|+|+  +.+|++|+.|+.|++||++....   ......+..|...|.+++|+|+. 
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCC
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccC
Confidence            998764 345677899999999999998  88999999999999999886532   11134567899999999999973 


Q ss_pred             ---------------CcEEEEeCCCCCCeEEEEECCCC---CeeEEEe-CCCCeEEEEEcCCC----CeEEEEecCCCCc
Q 012679          328 ---------------SNLLATGGGGGDRCIKFWNTHTG---ACLNSVD-TGSQVCALLWNKNE----RELLSSHGFTQNQ  384 (458)
Q Consensus       328 ---------------~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~d~~  384 (458)
                                     ..+|++++  .|+.|++||++.+   +++..+. +...|.+++|+|++    ..|++  |..|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~  239 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGR  239 (316)
T ss_dssp             C------CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCE
T ss_pred             CccccccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCe
Confidence                           24677766  9999999999765   3444454 45679999999987    66776  558999


Q ss_pred             EEEEeCCCc---e-eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          385 LTLWKYPSM---V-KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       385 i~iwd~~~~---~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      |+||++.+.   . ....+.+|...|.+++|+|+|++|++++.||+|++|+...
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            999998762   1 2334567899999999999999999999999999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-34  Score=288.50  Aligned_cols=272  Identities=20%  Similarity=0.372  Sum_probs=242.6

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      ..+.++.|+++.+++++.||.|++||+.+++.  +..+.+|...|.+++|+  +++|++|+.||.|++||+.+++.+..+
T Consensus       160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             CCEEEEEecCCEEEEEeCCCeEEEEECCcCcE--EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            35778888888899999999999999999876  67788999999999995  678999999999999999999999998


Q ss_pred             cCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      .. |...|.+++|++.++++|+.||.|++||++++. .+..+.+|...|.++.|  ++.++++|+.||.|++||++++..
T Consensus       236 ~~-~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~  311 (445)
T 2ovr_B          236 MG-HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC  311 (445)
T ss_dssp             EC-CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cC-CcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE
Confidence            87 999999999999999999999999999998765 46788899999999999  889999999999999999998766


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCCCeEEEE
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~  377 (458)
                            +..+.+|...+.++.+++   .++++++  .||.|++||+++++++..+.    +...|.++.|+  ++++++ 
T Consensus       312 ------~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s-  377 (445)
T 2ovr_B          312 ------IHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT-  377 (445)
T ss_dssp             ------EEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE-
T ss_pred             ------EEEEcCCcccEEEEEEeC---CEEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE-
Confidence                  778889999999998864   4666666  89999999999999999886    45679999996  567777 


Q ss_pred             ecCCCCcEEEEeCCCceeeEEE-----eCCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEecCCCC
Q 012679          378 HGFTQNQLTLWKYPSMVKMAEL-----SGHTSRVLFMAQSPDGCTVASAAADET----LRFWNVFGAP  436 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~-----~~h~~~V~~l~~spdg~~l~s~s~Dg~----i~iW~~~~~~  436 (458)
                       |..||.|++||+.+++.+..+     .+|.+.|++++|+|++.+|++|+.||+    |.+||+....
T Consensus       378 -~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~  444 (445)
T 2ovr_B          378 -SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM  444 (445)
T ss_dssp             -EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred             -EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence             558999999999999999888     478899999999999999999999998    9999997653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-35  Score=287.20  Aligned_cols=278  Identities=16%  Similarity=0.299  Sum_probs=233.3

Q ss_pred             ccceeeccCC---CeEEEEcCCEEEEEEC----CCCCe----eeEEEecC----------CCCCEEEEEEcCCCCEEEEE
Q 012679          143 YLNLLDWGSS---NVLAIALGSTVYLWDA----SDGTT----SELVTVDD----------ENGPVTSVNWAPDGRHIAIG  201 (458)
Q Consensus       143 ~~~~~~~~~~---~~la~~~d~~v~iwd~----~~~~~----~~~~~~~~----------h~~~V~~v~~s~~g~~la~g  201 (458)
                      .+.+++|+++   .+++++.|+.|++||+    .+++.    .....+..          |.+.|++++|+|++++|++|
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  126 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG  126 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence            4778899873   5777788999999999    87772    01233333          67799999999999999999


Q ss_pred             ecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc----------
Q 012679          202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE----------  269 (458)
Q Consensus       202 ~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~----------  269 (458)
                      +.||.|++|| .+++.+..+.. |...|.+++|+  +.+|++++.||.|++||+.++.. +..+..+...          
T Consensus       127 ~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  203 (425)
T 1r5m_A          127 VENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHS  203 (425)
T ss_dssp             ETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC-------------
T ss_pred             eCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeecccc
Confidence            9999999999 67778888876 99999999994  68999999999999999987664 5667666666          


Q ss_pred             -----eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679          270 -----VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF  344 (458)
Q Consensus       270 -----v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l  344 (458)
                           +.++.|++++ .+++++.||.|++||+.....      +..+..|...|.+++|+|++. ++++++  .|+.|++
T Consensus       204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i  273 (425)
T 1r5m_A          204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP------TGKLIGHHGPISVLEFNDTNK-LLLSAS--DDGTLRI  273 (425)
T ss_dssp             --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC------SEEECCCSSCEEEEEEETTTT-EEEEEE--TTSCEEE
T ss_pred             CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce------eeeeccCCCceEEEEECCCCC-EEEEEc--CCCEEEE
Confidence                 9999999875 588999999999999998765      677788999999999999765 555555  8999999


Q ss_pred             EECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          345 WNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       345 wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      ||+.+++.+..+. +...+.+++|+|++ .+++  +..++.|++||+.+++.+..+..|...|.+++|+|++++|++++.
T Consensus       274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          274 WHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             ECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence            9999999888886 56789999999999 6666  448999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCC
Q 012679          424 DETLRFWNVFGAP  436 (458)
Q Consensus       424 Dg~i~iW~~~~~~  436 (458)
                      ||.|++|++....
T Consensus       351 dg~i~i~~~~~~~  363 (425)
T 1r5m_A          351 DGQVNVYDLKKLN  363 (425)
T ss_dssp             TSCEEEEECHHHH
T ss_pred             CCeEEEEECCCCc
Confidence            9999999998665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-35  Score=290.88  Aligned_cols=268  Identities=13%  Similarity=0.203  Sum_probs=223.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      +.+++++.|+.|++||+.+++.  ...+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~  186 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFNLQ--REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTD  186 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSCEE--EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEE
T ss_pred             CEEEEEECCCCEEEEeCCCcce--eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEE
Confidence            5688888999999999998765  566678999999999999999999999999999999999999999987 9999999


Q ss_pred             EEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc---cc---------------------cceEeEEEcCCCCEEEEE
Q 012679          232 LAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG---HN---------------------QEVCGLKWSASGQQLASG  285 (458)
Q Consensus       232 l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~---h~---------------------~~v~~l~~spd~~~l~sg  285 (458)
                      ++|  ++.+|++|+.||.|++||++++.. +..+..   |.                     ..+.+++|+|++++|++|
T Consensus       187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  265 (420)
T 3vl1_A          187 IAIIDRGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG  265 (420)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence            999  478999999999999999997764 455543   32                     445556668999999999


Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEEe--CCCC
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVD--TGSQ  361 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~~--~~~~  361 (458)
                      +.||.|++||++....      +..+ ..|...|.+++|+|++..++++++  .||.|++||+++++. +..+.  +...
T Consensus       266 ~~dg~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~  337 (420)
T 3vl1_A          266 HVSGVITVHNVFSKEQ------TIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEGTP  337 (420)
T ss_dssp             ETTSCEEEEETTTCCE------EEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred             cCCCeEEEEECCCCce------eEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCCCC
Confidence            9999999999988764      3333 468899999999998886888877  899999999999754 55554  4566


Q ss_pred             eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc---------eeeEEEeCCCCcEEEEEEcCCCC---EEEEEeCCCcEEE
Q 012679          362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSM---------VKMAELSGHTSRVLFMAQSPDGC---TVASAAADETLRF  429 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~---------~~~~~~~~h~~~V~~l~~spdg~---~l~s~s~Dg~i~i  429 (458)
                      +.++.+ ++++.+++  +..|+.|++|++...         .....+.+|...|.+++|+|++.   .|++++.+|.+.+
T Consensus       338 v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~  414 (420)
T 3vl1_A          338 INNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL  414 (420)
T ss_dssp             EEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred             ceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence            777755 57777777  558999999998763         22334667889999999999999   7888889999999


Q ss_pred             EecCC
Q 012679          430 WNVFG  434 (458)
Q Consensus       430 W~~~~  434 (458)
                      |++.+
T Consensus       415 ~~~~~  419 (420)
T 3vl1_A          415 YNLSN  419 (420)
T ss_dssp             EESCC
T ss_pred             EeccC
Confidence            99865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-34  Score=283.91  Aligned_cols=246  Identities=24%  Similarity=0.443  Sum_probs=210.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc------------------ccEEEEEe--CCCeEE
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR------------------SRVGSLAW--NNHILT  240 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~------------------~~v~~l~~--~~~~l~  240 (458)
                      +|...|++++|+|||++||+|+ ++.++||++.+++.+..+.. |.                  ..|.+++|  ++.+|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSD-DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecC-ccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            5899999999999999999986 67999999999998887764 32                  24899999  478999


Q ss_pred             EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeE
Q 012679          241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA  320 (458)
Q Consensus       241 sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  320 (458)
                      +|+.||.|++||+.++. .+..+.+|...|.+++|+|++++|++|+.|++|++||++++..      ...+ .+...+.+
T Consensus       140 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~------~~~~-~~~~~v~~  211 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------SLTL-SIEDGVTT  211 (393)
T ss_dssp             EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------EEEE-ECSSCEEE
T ss_pred             EEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee------EEEE-EcCCCcEE
Confidence            99999999999998765 4678899999999999999999999999999999999988754      4444 35678999


Q ss_pred             EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      ++|+|....++++++  .|+.|++||++++..+..+.        +...|.+++|+|+++.|++  |..|+.|++||+.+
T Consensus       212 ~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~~  287 (393)
T 1erj_A          212 VAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC--
T ss_pred             EEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECCC
Confidence            999996667777776  99999999999999887762        4567999999999999988  55899999999975


Q ss_pred             c------------eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          393 M------------VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       393 ~------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      .            .....+.+|...|.+++|+|++.+|++|+.||.|++||+..+.....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            3            34567889999999999999999999999999999999988776544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-34  Score=286.91  Aligned_cols=274  Identities=21%  Similarity=0.409  Sum_probs=241.8

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+.++.++++.+++++.||.|++||+.+++.  +..+.+|.+.|.+++|+  +++|++|+.||.|++||+.+++.+..+.
T Consensus       121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  196 (445)
T 2ovr_B          121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY  196 (445)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEEEEcCCEEEEEECCCcEEEEECCCCcE--EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence            3567888889999999999999999999886  77888999999999997  6699999999999999999999999998


Q ss_pred             CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679          223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN  302 (458)
Q Consensus       223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~  302 (458)
                      . |...|.+++|++..+++|+.||.|++||++++.. +..+.+|...|.++.|  ++++|++|+.||.|++||+++... 
T Consensus       197 ~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~-  271 (445)
T 2ovr_B          197 G-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC-  271 (445)
T ss_dssp             C-CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred             C-CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE-
Confidence            7 9999999999999999999999999999997764 6778899999999999  789999999999999999987755 


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCC
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                           +..+.+|...|.+++|  + ...+++++  .|+.|++||+++++++..+.. ...+.++.+  +++.+++  |..
T Consensus       272 -----~~~~~~~~~~v~~~~~--~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~  337 (445)
T 2ovr_B          272 -----LHTLQGHTNRVYSLQF--D-GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS--GNA  337 (445)
T ss_dssp             -----EEEECCCSSCEEEEEE--C-SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE--EET
T ss_pred             -----eEEecCCCCceEEEEE--C-CCEEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE--EeC
Confidence                 7788899999999999  3 34566665  899999999999999988865 455777766  4567777  558


Q ss_pred             CCcEEEEeCCCceeeEEEeC---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          382 QNQLTLWKYPSMVKMAELSG---HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       382 d~~i~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      ||.|++||+.+++.+..+.+   |...|++++|+  +.+|++|+.||.|++||+.+++.+...
T Consensus       338 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence            99999999999999999986   88899999995  679999999999999999988766544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=282.51  Aligned_cols=291  Identities=18%  Similarity=0.211  Sum_probs=229.5

Q ss_pred             cccceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEe-----------cCCCCCEEEEEEcC-CCCEEEEEecCCe
Q 012679          142 YYLNLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTV-----------DDENGPVTSVNWAP-DGRHIAIGLNNCQ  206 (458)
Q Consensus       142 ~~~~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~-----------~~h~~~V~~v~~s~-~g~~la~g~~dg~  206 (458)
                      ..+++++|++   +.+++++.||.|++||+.+++.......           .+|...|++++|+| ++.+|++++.||.
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  123 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT  123 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence            3578889976   4478888899999999998765433332           25899999999999 7889999999999


Q ss_pred             EEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-
Q 012679          207 VQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-  280 (458)
Q Consensus       207 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-  280 (458)
                      |++||+.+++.+..+.  +...+.++.|.     +.++++|+.+|.|++||++++.. +..+.+|...|.+++|+|+++ 
T Consensus       124 i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~  200 (408)
T 4a11_B          124 LKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDY  200 (408)
T ss_dssp             EEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTT
T ss_pred             EEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCc
Confidence            9999999999888887  77889999983     35999999999999999987764 678889999999999999998 


Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCc----------ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          281 QLASGGNDNLLHIWDRSMASSNSV----------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       281 ~l~sg~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      +|++|+.||.|++||++.......          .........|...|.+++|+|++..+ ++++  .|+.|++||+.++
T Consensus       201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~--~dg~i~vwd~~~~  277 (408)
T 4a11_B          201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL-LTVG--TDNRMRLWNSSNG  277 (408)
T ss_dssp             EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE-EEEE--TTSCEEEEETTTC
T ss_pred             EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE-EEec--CCCeEEEEECCCC
Confidence            589999999999999987652100          00112235788999999999975554 5554  8999999999998


Q ss_pred             CeeEEEeCC------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679          351 ACLNSVDTG------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       351 ~~~~~~~~~------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      +........      ..+........+..++++  ..++.|++||+.+++.+..+.+|...|++++|+|++++|++++.|
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  355 (408)
T 4a11_B          278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV--PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD  355 (408)
T ss_dssp             CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE--EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ccceeccccccccccccceeEEecCCCceEEEE--ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence            865543221      112222223334444443  368999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCCCCcccc
Q 012679          425 ETLRFWNVFGAPQVIS  440 (458)
Q Consensus       425 g~i~iW~~~~~~~~~~  440 (458)
                      |.|++|++...+.+..
T Consensus       356 g~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          356 CNILAWVPSLYEPVPD  371 (408)
T ss_dssp             SCEEEEEECC------
T ss_pred             CeEEEEeCCCCCccCC
Confidence            9999999998776543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=275.85  Aligned_cols=251  Identities=23%  Similarity=0.409  Sum_probs=202.7

Q ss_pred             eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--eeeEEec-CCCcccEEEEEeC--CCeEEEEeCCCcEE
Q 012679          175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQLRTLR-GGHRSRVGSLAWN--NHILTTGGMDGLII  249 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~~~~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~  249 (458)
                      .+..+.+|.+.|.+++|+|+  +||+|+.||.|++||+.++  ..+..+. .+|...|.+++|+  +.+|++|+.|+.|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            36778899999999999987  9999999999999999875  4455553 3499999999995  68999999999999


Q ss_pred             EEEccCC------CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEe
Q 012679          250 NNDVRVR------DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAW  323 (458)
Q Consensus       250 vwd~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  323 (458)
                      +||+...      ......+.+|...|.+++|+|++++|++|+.|++|++||++....  ....+..+.+|...|.+++|
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--EYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC--CCEEEEEECCCSSCEEEEEE
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC--CeEEEEEeccCCCceEEEEE
Confidence            9998532      234667889999999999999999999999999999999954321  12336678899999999999


Q ss_pred             cCCCCcEEEEeCCCCCCeEEEEECCCC--CeeEEEe-CCCCeEEEEEcCC--CCeEEEEecCCCCcEEEEeCCCc-----
Q 012679          324 CPFQSNLLATGGGGGDRCIKFWNTHTG--ACLNSVD-TGSQVCALLWNKN--ERELLSSHGFTQNQLTLWKYPSM-----  393 (458)
Q Consensus       324 ~p~~~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~g~~d~~i~iwd~~~~-----  393 (458)
                      +|++ .+|++++  .|++|++||..++  +++..+. +...|.++.|+|+  +..+++  |..|+.|++||+...     
T Consensus       162 ~p~~-~~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          162 HPSE-ALLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             CSSS-SEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTSC
T ss_pred             CCCC-CEEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCcccc
Confidence            9975 5666666  8999999998876  5666665 4568999999998  556666  558999999998754     


Q ss_pred             ---eeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          394 ---VKMAELSG-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       394 ---~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                         .....+.+ |...|.+++|++++ +|++++.||+|++|++..+
T Consensus       237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence               34455555 89999999999766 7999999999999998765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-35  Score=290.70  Aligned_cols=283  Identities=19%  Similarity=0.329  Sum_probs=231.2

Q ss_pred             cccceeeccCCCeEE---EEcCCEEEEEECCCCCe--eeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCc
Q 012679          142 YYLNLLDWGSSNVLA---IALGSTVYLWDASDGTT--SELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~~~~la---~~~d~~v~iwd~~~~~~--~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      +..+.+.+++..+..   ++.||.|+||++.....  ..+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            345567787765443   46789999999865421  12445778999999999999 9999999999999999999987


Q ss_pred             -------eeeEEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCEEE
Q 012679          216 -------RQLRTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLA  283 (458)
Q Consensus       216 -------~~~~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~  283 (458)
                             +.+..+.+ |...|.+++|+  + .+|++|+.||.|++||++++.. +..+  .+|...|.+++|+|++++|+
T Consensus       115 ~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          115 GLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             CCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEE
Confidence                   56777776 99999999995  3 6899999999999999997764 5667  78999999999999999999


Q ss_pred             EEECCCcEEEEeCCCCCCCCcceeeeee-cccccc-eeEEEecCCCCcEEEEe-CCCCCCeEEEEECCCCCe---eEEEe
Q 012679          284 SGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSA-VKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGAC---LNSVD  357 (458)
Q Consensus       284 sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~-v~~l~~~p~~~~ll~s~-~g~~d~~i~lwd~~~~~~---~~~~~  357 (458)
                      +++.||.|++||++.+..      +..+ ..|... +.+++|+|+ ..+++++ +++.|+.|++||+++++.   ...+.
T Consensus       193 ~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTV------VAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             EEETTSEEEEEETTTTEE------EEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             EEecCCcEEEEeCCCCce------eeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence            999999999999988765      6666 677766 899999997 4566665 113899999999998764   33335


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-eEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-MAELSG--HTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      +...+.+++|+|+++.++++ |..|+.|++||+.+++. +..+..  |...|.+++|+|++.++++  .|+.+++|++..
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             CCCceeEEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            66789999999999999765 55799999999998774 444443  5689999999999998764  677999999987


Q ss_pred             CC
Q 012679          435 AP  436 (458)
Q Consensus       435 ~~  436 (458)
                      +.
T Consensus       343 ~~  344 (402)
T 2aq5_A          343 RK  344 (402)
T ss_dssp             TE
T ss_pred             Cc
Confidence            53

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.7e-34  Score=274.09  Aligned_cols=251  Identities=21%  Similarity=0.295  Sum_probs=205.4

Q ss_pred             eEEEecCCCCCEEEEEE-----cC-CCCEEEEEecCCeEEEEeCCCc-------eeeEEecCCCcccEEEEEeC--CCeE
Q 012679          175 ELVTVDDENGPVTSVNW-----AP-DGRHIAIGLNNCQVQLWDSTAN-------RQLRTLRGGHRSRVGSLAWN--NHIL  239 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~-----s~-~g~~la~g~~dg~v~iwd~~~~-------~~~~~~~~~~~~~v~~l~~~--~~~l  239 (458)
                      ....+.+|.+.|++++|     ++ ++++|++|+.||+|+|||+.+.       .....+.+ |...|.+++|+  +.+|
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEE
Confidence            35678899999999999     77 9999999999999999998753       34556666 99999999994  6899


Q ss_pred             EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccccee
Q 012679          240 TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK  319 (458)
Q Consensus       240 ~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  319 (458)
                      ++|+.|++|++||++++.. +..+.+|...|.+++|+|++++|++|+.|+.|++||+.....    ........|...|.
T Consensus        92 ~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK----FSSAEKENHSDWVS  166 (343)
T ss_dssp             EEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE----EECCTTTSCSSCEE
T ss_pred             EEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce----eeeecccCCCceee
Confidence            9999999999999998764 678889999999999999999999999999999999873321    00122237889999


Q ss_pred             EEEecCCCC---------cEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          320 AIAWCPFQS---------NLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       320 ~l~~~p~~~---------~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      +++|+|++.         .++++++  .|+.|++||. +++....+. +...|.+++|+|++++|++  |..|+.|++||
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~iwd  241 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLLIWD  241 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEEEEE
T ss_pred             eeeeccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEEEEE
Confidence            999999763         5777776  8999999994 455555554 5678999999999999998  55899999999


Q ss_pred             CCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          390 YPS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       390 ~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +.. ......+ .+...|.+++|+|++.+++ ++.|+.|++|++......
T Consensus       242 ~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          242 ILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             SSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC
T ss_pred             CCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC
Confidence            954 3444444 3556799999999998876 456888999999876543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.1e-34  Score=274.81  Aligned_cols=257  Identities=17%  Similarity=0.302  Sum_probs=215.1

Q ss_pred             EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc----eeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEE
Q 012679          178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN----RQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLII  249 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~----~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~  249 (458)
                      .+.+|.+.|++++|+|++++||+|+.||.|+|||+.++    +....+.. |...|.+++|+    +.+|++|+.||.|+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            35689999999999999999999999999999999876    45566666 99999999994    68999999999999


Q ss_pred             EEEccCCC--------eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeee-------eec
Q 012679          250 NNDVRVRD--------HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLH-------RLE  312 (458)
Q Consensus       250 vwd~~~~~--------~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~  312 (458)
                      +||++.+.        .....+.+|...|.+++|+|+  +++|++++.||.|++||++............       ...
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998764        446778899999999999999  9999999999999999998876533221111       112


Q ss_pred             ccccceeEEEecCC--CCcEEEEeCCCCCCeEEEEECCCCCe--eEEEe-CCCCeEEEEEcCCC----CeEEEEecCCCC
Q 012679          313 EHTSAVKAIAWCPF--QSNLLATGGGGGDRCIKFWNTHTGAC--LNSVD-TGSQVCALLWNKNE----RELLSSHGFTQN  383 (458)
Q Consensus       313 ~h~~~v~~l~~~p~--~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~-~~~~v~~~~~s~~~----~~l~~~~g~~d~  383 (458)
                      .|...+.+++|+|+  ...++++++  .|+.+.+|+...+..  +..+. +...|.+++|+|++    +.+++  |..||
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg  240 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDG  240 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTS
T ss_pred             CcccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCC
Confidence            57889999999997  356666665  899998888888775  44443 45789999999998    66766  55899


Q ss_pred             cEEEEeCCCc----------------------------------------------eeeEEEeCCCCcEEEEEEcCCCCE
Q 012679          384 QLTLWKYPSM----------------------------------------------VKMAELSGHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       384 ~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~V~~l~~spdg~~  417 (458)
                      .|++||+..+                                              +.+..+.+|...|++++|+|++++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            9999999764                                              677788899999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCccc
Q 012679          418 VASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       418 l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      |++++.||.|++|++..+....
T Consensus       321 l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCEE
T ss_pred             EEEecCCCcEEEEecCcCcchh
Confidence            9999999999999998766543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.3e-34  Score=284.47  Aligned_cols=284  Identities=11%  Similarity=0.242  Sum_probs=223.7

Q ss_pred             CCCccccceeeccC--CCeEEEEcCCEEEEEECCCCC---------eeeEEEecCCC------------CCEEEEEEcCC
Q 012679          138 LVDDYYLNLLDWGS--SNVLAIALGSTVYLWDASDGT---------TSELVTVDDEN------------GPVTSVNWAPD  194 (458)
Q Consensus       138 ~~~d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~---------~~~~~~~~~h~------------~~V~~v~~s~~  194 (458)
                      +.+.-.+.+++|++  +.+++++.||.|+|||+.+++         ......+.+|.            ..|++++|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            44556789999988  347778889999999998765         12366778898            88999999999


Q ss_pred             C--CEEEEEecCCeEEEEeCCCceee---------------------------------------EEecCCCcccEEEEE
Q 012679          195 G--RHIAIGLNNCQVQLWDSTANRQL---------------------------------------RTLRGGHRSRVGSLA  233 (458)
Q Consensus       195 g--~~la~g~~dg~v~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~l~  233 (458)
                      +  .+|++++.||.|++||+.++...                                       ..+..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  89999999999999998765432                                       233345999999999


Q ss_pred             eC--CCeEEEEeCCCcEEEEEccCCCeeEE-------EEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCC
Q 012679          234 WN--NHILTTGGMDGLIINNDVRVRDHIVE-------TYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNS  303 (458)
Q Consensus       234 ~~--~~~l~sg~~dg~i~vwd~~~~~~~~~-------~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~  303 (458)
                      |+  +.+|++| .||.|++||++.......       .+.+|...|.+++|+|++ ++|++|+.||.|++||++......
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            94  6899998 799999999985444344       256899999999999998 999999999999999998876411


Q ss_pred             cceeeeeeccccc------------ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEEeCCCC---------
Q 012679          304 VTQWLHRLEEHTS------------AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSVDTGSQ---------  361 (458)
Q Consensus       304 ~~~~~~~~~~h~~------------~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~~~~~---------  361 (458)
                        ..+..+..|..            .|.+++|+|++. ++++++  . +.|++||+++ ++++..+..+..         
T Consensus       264 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          264 --RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY  337 (447)
T ss_dssp             --TTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred             --ceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccceeeccccccccccccc
Confidence              11355666665            899999999755 455554  5 9999999997 888888876543         


Q ss_pred             -------eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---------------------------------
Q 012679          362 -------VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG---------------------------------  401 (458)
Q Consensus       362 -------v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~---------------------------------  401 (458)
                             +..++|+|++++|++  |..||.|++||+.+++.+. +.+                                 
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD  414 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred             cccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccc
Confidence                   334999999999987  6689999999999887653 332                                 


Q ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          402 HTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       402 h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      +...|..++|+|++.+||+++.++ +++|.-
T Consensus       415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          415 FNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             TTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence            235688999999999999988776 777764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.9e-34  Score=304.07  Aligned_cols=281  Identities=16%  Similarity=0.298  Sum_probs=245.0

Q ss_pred             ccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+.+++|+++  .+++++.+|.|+|||+.+++.  +..+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~   92 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce--EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            4788999983  477777899999999999876  667778999999999999999999999999999999999999999


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~  297 (458)
                      +.. |...|.+++|+  +..|++|+.||.|++||+.++......+.+|...|.+++|+| +++.|++++.||.|++||+.
T Consensus        93 ~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~  171 (814)
T 3mkq_A           93 FEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (814)
T ss_dssp             EEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             Eec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            987 99999999995  679999999999999999988677788889999999999999 89999999999999999998


Q ss_pred             CCCCCCcceeeeeecc-cccceeEEEecC--CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCe
Q 012679          298 MASSNSVTQWLHRLEE-HTSAVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERE  373 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~  373 (458)
                      ....      ...+.. +...+.+++|+|  ++. ++++++  .|+.|++||+.+++++..+. +...+.+++|+|++..
T Consensus       172 ~~~~------~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  242 (814)
T 3mkq_A          172 QSTP------NFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (814)
T ss_dssp             CSSC------SEEEECCCTTCCCEEEECCSTTCC-EEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CCcc------eeEEecCCCCCEEEEEEEECCCCC-EEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence            7665      344444 448899999999  544 556655  89999999999999998887 4578999999999999


Q ss_pred             EEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEecCCCCc
Q 012679          374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT-VASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       374 l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      +++  |..||.|++||+.+++.+..+..|...|.+++|+|+|.. +++++.|+.+.+|++.....
T Consensus       243 l~~--~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          243 IIS--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             EEE--EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             EEE--EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            988  458999999999999999999999999999999999873 24455577789999876543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=277.87  Aligned_cols=251  Identities=17%  Similarity=0.308  Sum_probs=212.0

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--CceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--ANRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLII  249 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~  249 (458)
                      +..+.+|.+.|++++|+|++++||+|+.||.|+|||+.  +++.+..+.. |...|.+++|.    +.+|++|+.||.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            45567899999999999999999999999999999998  6667777876 99999999995    78999999999999


Q ss_pred             EEEccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          250 NNDVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       250 vwd~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      +||+.++. .....+..|...|.+++|+|+  +.+|++++.|+.|++||++.....    ....+..|...|.+++|+|.
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----SPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----CEEEEECCTTCEEEEEECCC
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----eeEEecCCCCceEEEEEcCc
Confidence            99999775 246677889999999999999  999999999999999999887442    14566789999999999995


Q ss_pred             ------------CCcEEEEeCCCCCCeEEEEECCCCCee----EEEe-CCCCeEEEEEcCC---CCeEEEEecCCCCcEE
Q 012679          327 ------------QSNLLATGGGGGDRCIKFWNTHTGACL----NSVD-TGSQVCALLWNKN---ERELLSSHGFTQNQLT  386 (458)
Q Consensus       327 ------------~~~ll~s~~g~~d~~i~lwd~~~~~~~----~~~~-~~~~v~~~~~s~~---~~~l~~~~g~~d~~i~  386 (458)
                                  ...++++++  .|+.|++||++++...    ..+. +...|.+++|+|+   +.++++  +..|+.|+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~  234 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCI  234 (379)
T ss_dssp             C----------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEE
T ss_pred             cccccccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEE
Confidence                        356666666  8999999999887533    3343 4678999999999   778877  45899999


Q ss_pred             EEeCCCce-----eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          387 LWKYPSMV-----KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       387 iwd~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +||+.++.     .+.....|...|++++|+|+|++|++++.||.|++|++...
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            99998863     22223448899999999999999999999999999999743

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-33  Score=291.82  Aligned_cols=282  Identities=16%  Similarity=0.299  Sum_probs=243.2

Q ss_pred             ccccceeeccC-CCeEEEEcCCEEEEEECCCC----CeeeEEEecCCCCC-EEEEEEcC--CCCEEEEEecCCeEEEEeC
Q 012679          141 DYYLNLLDWGS-SNVLAIALGSTVYLWDASDG----TTSELVTVDDENGP-VTSVNWAP--DGRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       141 d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~----~~~~~~~~~~h~~~-V~~v~~s~--~g~~la~g~~dg~v~iwd~  212 (458)
                      ...+.+++|++ +++++.+.++.|++||+.++    +.  ...+.+|... |++++|+|  ++++||+|+.||.|+|||+
T Consensus        18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~--~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~   95 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP--VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   95 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS--EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCeEEEEECCCCCCcccc--ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence            45678899988 55777777999999999987    54  6778899999 99999999  9999999999999999999


Q ss_pred             CCc--------eeeEEecCCCcccEEEEEeC--CCeEEEEeCC----CcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679          213 TAN--------RQLRTLRGGHRSRVGSLAWN--NHILTTGGMD----GLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS  278 (458)
Q Consensus       213 ~~~--------~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  278 (458)
                      .++        +.+..+.. |...|.+++|+  +.+|++++.+    +.|.+||.  +. ....+.+|...|.+++|+|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~  171 (615)
T 1pgu_A           96 TFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQS  171 (615)
T ss_dssp             EEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECSS
T ss_pred             CCCcccccccccccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECCC
Confidence            754        66677776 99999999994  6899999887    78888883  33 46788899999999999999


Q ss_pred             CC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc---ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679          279 GQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS---AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN  354 (458)
Q Consensus       279 ~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~  354 (458)
                      ++ +|++++.|+.|++||+.....      +..+..|..   .|.+++|+|++..++++++  .|+.|++||+.+++.+.
T Consensus       172 ~~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~  243 (615)
T 1pgu_A          172 RPMRSMTVGDDGSVVFYQGPPFKF------SASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLK  243 (615)
T ss_dssp             SSCEEEEEETTTEEEEEETTTBEE------EEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEE
T ss_pred             CCcEEEEEeCCCcEEEEeCCCcce------eeeecccCCCCceEEEEEECCCCCCEEEEEe--CCCeEEEEECCCCCEeE
Confidence            98 899999999999999887655      778888998   9999999998345566655  89999999999999999


Q ss_pred             EE-----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC----CCcEEEEEEcCCCCEEEEEeCCC
Q 012679          355 SV-----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH----TSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       355 ~~-----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h----~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      .+     .+...|.+++|+ ++..++++  ..|+.|++||+.+++.+..+..+    ...+.++.|+ ++.++++++.||
T Consensus       244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g  319 (615)
T 1pgu_A          244 YIEDDQEPVQGGIFALSWL-DSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG  319 (615)
T ss_dssp             ECCBTTBCCCSCEEEEEES-SSSEEEEE--ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred             EecccccccCCceEEEEEc-CCCEEEEE--cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence            98     567889999999 99999884  47999999999999999999877    3678888886 899999999999


Q ss_pred             cEEEEecCCCCcccc
Q 012679          426 TLRFWNVFGAPQVIS  440 (458)
Q Consensus       426 ~i~iW~~~~~~~~~~  440 (458)
                      .|++||+........
T Consensus       320 ~i~~~d~~~~~~~~~  334 (615)
T 1pgu_A          320 TLNFYELGHDEVLKT  334 (615)
T ss_dssp             CEEEEETTEEEEEEE
T ss_pred             CEEEEECCCCcEEEE
Confidence            999999987554443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.8e-33  Score=279.61  Aligned_cols=272  Identities=17%  Similarity=0.257  Sum_probs=234.6

Q ss_pred             ccccceeeccCC-CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEc--CCCCEEEEEecCCeEEEEeCCCcee
Q 012679          141 DYYLNLLDWGSS-NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWA--PDGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       141 d~~~~~~~~~~~-~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s--~~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ...+.++.|+++ .+++++.||+|++||+.+++.  +..+.+|...|.+++|+  +++.+|++|+.||.|++||+.++..
T Consensus       162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred             CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE--EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence            346788999874 688888999999999999876  67788999999999998  5789999999999999999987653


Q ss_pred             -----------------------eEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE
Q 012679          218 -----------------------LRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK  274 (458)
Q Consensus       218 -----------------------~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~  274 (458)
                                             +..+.+ |...|.++..++.++++|+.||.|++||+++... +..+.+|...|.+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~  317 (464)
T 3v7d_B          240 VPDHGEEHDYPLVFHTPEENPYFVGVLRG-HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI  317 (464)
T ss_dssp             C------CCSSEEESCGGGCTTEEEEECC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE
T ss_pred             cccccccCCcceEeeccCCCeEEEEEccC-ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE
Confidence                                   334444 9999999999999999999999999999987654 678889999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE
Q 012679          275 WSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN  354 (458)
Q Consensus       275 ~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~  354 (458)
                      |+|++++|++|+.||.|++||++++..      +..+.+|...|.+++|++   ..+++++  .||.|++||+.++....
T Consensus       318 ~~~~~~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~~---~~l~s~s--~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          318 YDHERKRCISASMDTTIRIWDLENGEL------MYTLQGHTALVGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEECS---SEEEEEE--TTSEEEEEETTTCCEEE
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcE------EEEEeCCCCcEEEEEEcC---CEEEEEe--CCCcEEEEECCCCceee
Confidence            999999999999999999999988765      788899999999999984   5667766  89999999999999888


Q ss_pred             EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE-EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          355 SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       355 ~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      .......+..++|++++..++++  . ++.|++||+.+++.+.. +.+|...|.+++|+ +..++++++.||.+.+|-
T Consensus       387 ~~~~~~~~~~~~~~~~~~~l~~~--~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          387 SYHHTNLSAITTFYVSDNILVSG--S-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEECTTCCCEEEEEECSSEEEEE--E-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             eecCCCCccEEEEEeCCCEEEEe--c-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            88888889999999999988884  3 89999999999999886 67889999999997 344555556676655543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2e-33  Score=313.41  Aligned_cols=283  Identities=21%  Similarity=0.340  Sum_probs=245.2

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..+.++.|++  ..+++++.||.|++||+.+++.  +..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+.
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            4578889987  4577788899999999999886  77788999999999999999999999999999999999999999


Q ss_pred             EecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          220 TLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      .+.. |...|.+++|+    +.++++|+.||.|++||++++.. ...+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus       694 ~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd  771 (1249)
T 3sfz_A          694 TYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD  771 (1249)
T ss_dssp             EEEC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred             EEcC-CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence            9987 99999999994    35899999999999999998764 678889999999999999999999999999999999


Q ss_pred             CCCCCCCCcceee-------eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEE
Q 012679          296 RSMASSNSVTQWL-------HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALL  366 (458)
Q Consensus       296 ~~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~  366 (458)
                      +..+.........       .....+...+.+++|+|++..+++.    .++.+.+||+.++..+..+.  +...+.+++
T Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE----ETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE----cCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            9876541110000       0011233478899999987766654    36899999999999888875  457899999


Q ss_pred             EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      |+|++..+++  |..++.|++|++.++..+..+.+|...|.+++|+|+|.+|++++.||.|++|++..
T Consensus       848 ~sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          848 FSPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             ECSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EcCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            9999999998  55899999999999999999999999999999999999999999999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-33  Score=264.13  Aligned_cols=242  Identities=21%  Similarity=0.360  Sum_probs=199.9

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCce--
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANR--  216 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~--  216 (458)
                      .+++++|++  ..+++++.|++|+|||+.++....+..+.+|.+.|++++|++  ++++||+|+.||+|+|||+.+++  
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence            567777776  568889999999999998654444778899999999999986  48999999999999999998874  


Q ss_pred             eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcCC-------------
Q 012679          217 QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSAS-------------  278 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spd-------------  278 (458)
                      .+..+.. |...|.+++|+    +.+|++|+.||.|++||++.... ....+.+|...|.+++|+|+             
T Consensus        91 ~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~  169 (297)
T 2pm7_B           91 QIAVHAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE  169 (297)
T ss_dssp             CCEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------
T ss_pred             EEEEeec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCC
Confidence            4556665 99999999995    57999999999999999987642 24567799999999999997             


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC--CcEEEEeCCCCCCeEEEEECCCCC--e-e
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTGA--C-L  353 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~~--~-~  353 (458)
                      +++|++|+.|+.|++||++.....  ......+.+|...|.+++|+|++  ..++++++  .|++|++||+.++.  . .
T Consensus       170 ~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~  245 (297)
T 2pm7_B          170 SRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKK  245 (297)
T ss_dssp             CCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEE
T ss_pred             cceEEEEcCCCcEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccce
Confidence            579999999999999998865421  12256788999999999999986  57888877  99999999998753  1 1


Q ss_pred             EEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          354 NSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       354 ~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      ..+   .+...|.+++|+|+++.|+++  ..|+.|+||+..
T Consensus       246 ~~~~~~~~~~~v~~~~~s~~g~~las~--~~D~~v~lw~~~  284 (297)
T 2pm7_B          246 TLLKEEKFPDVLWRASWSLSGNVLALS--GGDNKVTLWKEN  284 (297)
T ss_dssp             EESSSSCCSSCEEEEEECSSSCCEEEE--ETTSCEEEEEEC
T ss_pred             eeeecccCCCcEEEEEECCCCCEEEEE--cCCCcEEEEEEC
Confidence            222   235679999999999999984  479999999976

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.4e-34  Score=276.53  Aligned_cols=252  Identities=18%  Similarity=0.303  Sum_probs=214.4

Q ss_pred             EEEecCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCCceeeEEecC-CCcccEEEEEeCC---CeEEEEeCCCcEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAWNN---HILTTGGMDGLIIN  250 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~~~---~~l~sg~~dg~i~v  250 (458)
                      ...+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+.. +|...|.+++|++   .+|++++.||.|++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            55678899999999999999 9999999999999999998887777652 4999999999954   79999999999999


Q ss_pred             EEccCCCeeEEEEc---ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          251 NDVRVRDHIVETYR---GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       251 wd~~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      ||++..  ....+.   .|...|.+++|+|++++|++|+.|+.|++||++ ...      +..+..|...|.+++|+|++
T Consensus       146 wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~------~~~~~~h~~~v~~~~~~~~~  216 (383)
T 3ei3_B          146 RDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE------IFKEKLHKAKVTHAEFNPRC  216 (383)
T ss_dssp             EETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE------EEEEECSSSCEEEEEECSSC
T ss_pred             EECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE------EEEeccCCCcEEEEEECCCC
Confidence            999853  244444   345889999999999999999999999999984 322      67888999999999999988


Q ss_pred             CcEEEEeCCCCCCeEEEEECCC----CCeeEEEeCCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHT----GACLNSVDTGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ..++++++  .|+.|++||+++    +.++..+.+...|.+++|+| ++.++++  +..|+.|++||+.+++.+..+.+|
T Consensus       217 ~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          217 DWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT--TDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             TTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE--EESSSEEEEEETTBTTSCSEEEEC
T ss_pred             CCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE--EcCCCcEEEEECCCCccccccccc
Confidence            87888877  899999999998    77888888889999999999 9999988  447999999999998877777655


Q ss_pred             C-----------------CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          403 T-----------------SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       403 ~-----------------~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      .                 ..+..++|+|+|++  +++.||.|++||+..+..+....
T Consensus       293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence            3                 34455677777766  77899999999998887765543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.8e-33  Score=274.69  Aligned_cols=257  Identities=16%  Similarity=0.186  Sum_probs=220.2

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce------eeEEecCCCcccEEEEEe--C----C---CeEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR------QLRTLRGGHRSRVGSLAW--N----N---HILT  240 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~------~~~~~~~~~~~~v~~l~~--~----~---~~l~  240 (458)
                      ...+.+|.+.|++++|+|  ++|++|+.||.|+|||+.+++      .+..+.. |...|.+++|  +    +   .+|+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEE
Confidence            456779999999999998  799999999999999999887      6777776 9999999999  4    6   7999


Q ss_pred             EEeCCCcEEEEEccCCCe----eEEEEccc-----ccceEeEEEc----CCCCE-EEEEECCCcEEEEeCCC------CC
Q 012679          241 TGGMDGLIINNDVRVRDH----IVETYRGH-----NQEVCGLKWS----ASGQQ-LASGGNDNLLHIWDRSM------AS  300 (458)
Q Consensus       241 sg~~dg~i~vwd~~~~~~----~~~~~~~h-----~~~v~~l~~s----pd~~~-l~sg~~dg~i~iwd~~~------~~  300 (458)
                      +++.||.|++||+.+...    ....+..|     ...|.+++|+    |++++ |++|+.||.|++||+..      ..
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            999999999999987653    15677788     5899999999    99999 99999999999999987      44


Q ss_pred             CCCcceeeeee-------cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-------CCCeEEEE
Q 012679          301 SNSVTQWLHRL-------EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-------GSQVCALL  366 (458)
Q Consensus       301 ~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------~~~v~~~~  366 (458)
                      ... ..+...+       ..|...|.+++|+|++  ++++++  .|+.|++||+++++++..+..       ...+.+++
T Consensus       166 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~  240 (397)
T 1sq9_A          166 TLN-WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  240 (397)
T ss_dssp             TTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             eee-ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence            411 0111144       4588999999999987  777776  899999999999999999886       78899999


Q ss_pred             EcCCCCeEEEEecCCC---CcEEEEeCCCceeeEEEeC-------------CCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          367 WNKNERELLSSHGFTQ---NQLTLWKYPSMVKMAELSG-------------HTSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d---~~i~iwd~~~~~~~~~~~~-------------h~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      |+|++++++++  ..+   +.|++||+.+++.+..+.+             |...|.+++|+|++++|++++.||.|++|
T Consensus       241 ~~~~~~~l~~~--~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          241 FSPQGSLLAIA--HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             ECSSTTEEEEE--EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ECCCCCEEEEE--ecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999999984  467   9999999999999999998             99999999999999999999999999999


Q ss_pred             ecCCCCcccccC
Q 012679          431 NVFGAPQVISKS  442 (458)
Q Consensus       431 ~~~~~~~~~~~~  442 (458)
                      |+..........
T Consensus       319 d~~~~~~~~~~~  330 (397)
T 1sq9_A          319 DVKTKERITTLN  330 (397)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             EcCCCceeEEEe
Confidence            998876655443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-33  Score=277.99  Aligned_cols=252  Identities=22%  Similarity=0.408  Sum_probs=214.9

Q ss_pred             EEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCC----------ceeeEEecCCCcccEEEEEeC--CC-eEEEE
Q 012679          177 VTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTA----------NRQLRTLRGGHRSRVGSLAWN--NH-ILTTG  242 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~----------~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg  242 (458)
                      .....|.+.|++++|+|+ +.+||+|+.+|.|+|||+.+          ...+..+.. |...|.+++|+  +. +|++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEE
Confidence            344568999999999997 78999999999999999987          567777776 99999999995  34 99999


Q ss_pred             eCCCcEEEEEccCCCe------eEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679          243 GMDGLIINNDVRVRDH------IVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT  315 (458)
Q Consensus       243 ~~dg~i~vwd~~~~~~------~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  315 (458)
                      +.||.|++||+.....      ....+.+|...|.+++|+| ++.+|++++.||.|++||++.....   ..+..+..|.
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~---~~~~~~~~~~  277 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS---KPSHTVDAHT  277 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---SCSEEEECCS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---cceeEeecCC
Confidence            9999999999987432      1356678999999999999 7889999999999999999976421   1256677899


Q ss_pred             cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-
Q 012679          316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-  392 (458)
Q Consensus       316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-  392 (458)
                      ..|.+++|+|++..++++++  .|+.|++||+++ +.++..+. +...|.+++|+|+++.++++ +..|+.|+|||+.. 
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWDLSKI  354 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEEGGGT
T ss_pred             CCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEeCCCC
Confidence            99999999999888998887  999999999998 56677775 56789999999999865554 44799999999987 


Q ss_pred             -------------ceeeEEEeCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC
Q 012679          393 -------------MVKMAELSGHTSRVLFMAQSPDGC-TVASAAADETLRFWNVFGA  435 (458)
Q Consensus       393 -------------~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~  435 (458)
                                   .+.+..+.+|...|++++|+|++. +|++++.||.|+||++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                         366778889999999999999999 9999999999999999643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6e-34  Score=275.70  Aligned_cols=281  Identities=12%  Similarity=0.090  Sum_probs=208.8

Q ss_pred             ccccceeeccCC-CeEEEE-cC-------CEEEEEECCCCCe--------eeEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 012679          141 DYYLNLLDWGSS-NVLAIA-LG-------STVYLWDASDGTT--------SELVTVDDENGPVTSVNWAPDGRHIAIGL-  202 (458)
Q Consensus       141 d~~~~~~~~~~~-~~la~~-~d-------~~v~iwd~~~~~~--------~~~~~~~~h~~~V~~v~~s~~g~~la~g~-  202 (458)
                      +|.+.+++|+++ .++++| .|       +.|++|++..+..        .....+..|...|.+++++  ++.+++|. 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            456888999874 344444 32       3699999876542        1224567888889888765  55777664 


Q ss_pred             ----------cCCeEEEEeCCCceeeE----Eec----CCCcccEEEEEe--CCCeEEE--EeCCCcEEEEEccCCCeeE
Q 012679          203 ----------NNCQVQLWDSTANRQLR----TLR----GGHRSRVGSLAW--NNHILTT--GGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       203 ----------~dg~v~iwd~~~~~~~~----~~~----~~~~~~v~~l~~--~~~~l~s--g~~dg~i~vwd~~~~~~~~  260 (458)
                                .|+.+++|++.......    ...    ..+...+.+++|  +|+++++  ++.|++|++||+++... +
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~  170 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-K  170 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-E
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-E
Confidence                      46789999876543211    111    124456788888  5677664  45789999999998765 3


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR  340 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~  340 (458)
                      ..+ .|...|.+++|+|||++|++++.+ .+.+|+...+..    ........|...|.+++|+|++..+++.+   .|+
T Consensus       171 ~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~  241 (365)
T 4h5i_A          171 FEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC----IARKTDFDKNWSLSKINFIADDTVLIAAS---LKK  241 (365)
T ss_dssp             EEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE----EEEECCCCTTEEEEEEEEEETTEEEEEEE---ESS
T ss_pred             EEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc----eeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCC
Confidence            444 477889999999999999999865 566666655543    11234557889999999999866665543   344


Q ss_pred             ----eEEEEECCCCCee----EEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE-eCCCCcEEEEE
Q 012679          341 ----CIKFWNTHTGACL----NSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-SGHTSRVLFMA  410 (458)
Q Consensus       341 ----~i~lwd~~~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~-~~h~~~V~~l~  410 (458)
                          .+++|++..+...    ..+ .+...|++++|+|++++|++  |..|+.|+|||+.+++++.++ .+|...|++++
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence                6889998876542    223 34567999999999999998  558999999999999999885 78999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          411 QSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       411 ~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      |+|||++||||+.|++|+||++...
T Consensus       320 fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          320 ISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-33  Score=297.54  Aligned_cols=255  Identities=18%  Similarity=0.309  Sum_probs=228.8

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+.. |...|.+++|  ++.+|++|+.||.|++||+
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            556788999999999999999999999999999999999999999987 9999999999  4789999999999999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      .++.. +..+.+|...|.+++|+|++++|++|+.||.|++||+.....     ....+..|...|.+++|+|....++++
T Consensus        85 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~  158 (814)
T 3mkq_A           85 NTGEK-VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----LEQTFEGHEHFVMCVAFNPKDPSTFAS  158 (814)
T ss_dssp             TTCCE-EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----EEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             CCCcE-EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----EEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence            98765 677889999999999999999999999999999999987532     256778899999999999955667777


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeCC--CCeEEEEEcC--CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNK--NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM  409 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l  409 (458)
                      ++  .|+.|++||+.++.....+..+  ..+..++|+|  ++..+++  |..++.|++||+.+++.+..+.+|...|.++
T Consensus       159 ~~--~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          159 GC--LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EE--TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             Ee--CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            66  8999999999998887777553  6799999999  8888888  5589999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          410 AQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       410 ~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      +|+|+|.+|++++.||.|++||+.+.......
T Consensus       235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            99999999999999999999999887655443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-33  Score=298.69  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=219.6

Q ss_pred             ccccceeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee-
Q 012679          141 DYYLNLLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL-  218 (458)
Q Consensus       141 d~~~~~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~-  218 (458)
                      ...+..+.|+++. +++++.|++|++||+.+++.  +..+. |.+.|++++|+|++++|++|+.||.|++||+.+++.. 
T Consensus        58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~--~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV--LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE--EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE--EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            3468889999866 88899999999999999886  44554 5678999999999999999999999999999988753 


Q ss_pred             ----------EEecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeEEEEccc------------------c
Q 012679          219 ----------RTLRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIVETYRGH------------------N  267 (458)
Q Consensus       219 ----------~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h------------------~  267 (458)
                                ..+. +|...|.+++|++   ..|++|+.||.| +||+++... ...+..|                  .
T Consensus       135 ~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          135 FKLDNLQKSSFFPA-ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             EEECCHHHHHTCSS-SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ceeccccccccccc-cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccC
Confidence                      1223 4899999999965   589999999999 999997654 5555544                  5


Q ss_pred             cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc----------------------c-----------------e--
Q 012679          268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV----------------------T-----------------Q--  306 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~----------------------~-----------------~--  306 (458)
                      ..|.+++|+|+|++|++|+.||.|++||+++++....                      .                 .  
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll  291 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL  291 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence            7799999999999999999999999999865432000                      0                 0  


Q ss_pred             ------------eeeeec------------------------------ccc-----------------------------
Q 012679          307 ------------WLHRLE------------------------------EHT-----------------------------  315 (458)
Q Consensus       307 ------------~~~~~~------------------------------~h~-----------------------------  315 (458)
                                  .+..+.                              .+.                             
T Consensus       292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s  371 (902)
T 2oaj_A          292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL  371 (902)
T ss_dssp             EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred             EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence                        000000                              000                             


Q ss_pred             ------------------------------cceeEE----------------------------------EecCCCCcEE
Q 012679          316 ------------------------------SAVKAI----------------------------------AWCPFQSNLL  331 (458)
Q Consensus       316 ------------------------------~~v~~l----------------------------------~~~p~~~~ll  331 (458)
                                                    ..|+++                                  +|+|+ ..++
T Consensus       372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~l  450 (902)
T 2oaj_A          372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAF  450 (902)
T ss_dssp             TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEE
T ss_pred             CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc-CcEE
Confidence                                          111111                                  22332 3466


Q ss_pred             EEeCCCCCCeEEEEECCCCCee----EEE--------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc------
Q 012679          332 ATGGGGGDRCIKFWNTHTGACL----NSV--------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM------  393 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~----~~~--------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~------  393 (458)
                      ++|+  .|++|++||+.++...    ...        .+...|.+++|+|++++|++  |..||+|+||++.++      
T Consensus       451 aSgs--~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs--gs~DgtV~lwd~~~~~~~~~~  526 (902)
T 2oaj_A          451 ITGH--SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV--SIETGDVVLFKYEVNQFYSVE  526 (902)
T ss_dssp             EEEE--TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE--EETTSCEEEEEEEECCC----
T ss_pred             EEec--CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE--EecCcEEEEEEecCccccCcc
Confidence            6666  8888999988877421    111        24567999999999999998  558999999998765      


Q ss_pred             ---------------------------------------eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          394 ---------------------------------------VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       394 ---------------------------------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                                                             +++..+.+|.+.|++++||||| +||+|+.|++|++||+.+
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred             ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence                                                   3467888999999999999999 999999999999999977


Q ss_pred             CCcc
Q 012679          435 APQV  438 (458)
Q Consensus       435 ~~~~  438 (458)
                      ...+
T Consensus       606 ~~~~  609 (902)
T 2oaj_A          606 PAII  609 (902)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            6543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.5e-33  Score=264.53  Aligned_cols=273  Identities=13%  Similarity=0.116  Sum_probs=226.1

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeC-CCce
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDS-TANR  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~-~~~~  216 (458)
                      -.+.++.|++  ..+++++.|+.|++|++.+++ ......+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence            3578888986  458888899999999998876 112334457899999999999999 9999999999999999 8776


Q ss_pred             eeEEecCC--CcccEEEEEeC-CCeEEEEeCCCcEEEEEccC---------CCeeEEEEcccccceEeEEEcCCCCEEEE
Q 012679          217 QLRTLRGG--HRSRVGSLAWN-NHILTTGGMDGLIINNDVRV---------RDHIVETYRGHNQEVCGLKWSASGQQLAS  284 (458)
Q Consensus       217 ~~~~~~~~--~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~~h~~~v~~l~~spd~~~l~s  284 (458)
                      . ..+. +  |...|.+++|+ +..|++++.||.|++||+++         ... +..+. |...|.+++|+|++  +++
T Consensus        92 ~-~~~~-~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~--l~~  165 (342)
T 1yfq_A           92 F-QALT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR--LIV  165 (342)
T ss_dssp             E-EECB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE--EEE
T ss_pred             e-Eecc-ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc--EEE
Confidence            5 3343 4  89999999997 79999999999999999986         432 33343 88999999999887  999


Q ss_pred             EECCCcEEEEeCCC-CCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCCCCeEEEEECCCC------CeeEEE
Q 012679          285 GGNDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTG------ACLNSV  356 (458)
Q Consensus       285 g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~------~~~~~~  356 (458)
                      ++.|+.|++||++. ....    .......|...|.+++|+| ++. ++++++  .|+.|++|++...      +....+
T Consensus       166 ~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          166 GMNNSQVQWFRLPLCEDDN----GTIEESGLKYQIRDVALLPKEQE-GYACSS--IDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             EESTTEEEEEESSCCTTCC----CEEEECSCSSCEEEEEECSGGGC-EEEEEE--TTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             EeCCCeEEEEECCcccccc----ceeeecCCCCceeEEEECCCCCC-EEEEEe--cCCcEEEEEEcCCCcccccccceee
Confidence            99999999999987 4431    1334457888999999999 765 455555  8999999999887      666676


Q ss_pred             eCC----------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEeCCC
Q 012679          357 DTG----------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       357 ~~~----------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      ..+          ..|.+++|+|++++|++  |..||.|++||+.+++.+..+.+| ...|++++  |++++|++++.||
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            543          28999999999999988  458999999999999999999998 99999999  9999999999999


Q ss_pred             c-EEEEe
Q 012679          426 T-LRFWN  431 (458)
Q Consensus       426 ~-i~iW~  431 (458)
                      + .+.|.
T Consensus       315 ~~~~~~~  321 (342)
T 1yfq_A          315 TFKTNAA  321 (342)
T ss_dssp             HHHHCSS
T ss_pred             ccccccc
Confidence            8 44444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=267.50  Aligned_cols=251  Identities=14%  Similarity=0.237  Sum_probs=209.6

Q ss_pred             EecCCCCCEEEEEEcCCCCEE-EEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEeC-----CCeEEEEeCCCcE
Q 012679          178 TVDDENGPVTSVNWAPDGRHI-AIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-----NHILTTGGMDGLI  248 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~l-a~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i  248 (458)
                      .+.+|...|++++|+|++..+ ++|+.   ||.|+|||+.+++.......+|...|.+++|+     +.+|++|+.||.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            446799999999999999655 55655   89999999999887655544499999999994     4899999999999


Q ss_pred             EEEEccCCCeeEEEEcccccceEeEEE------cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc----ce
Q 012679          249 INNDVRVRDHIVETYRGHNQEVCGLKW------SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS----AV  318 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~------spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----~v  318 (458)
                      ++||+.+....+..+.+|...|.++.|      +|++++|++|+.||.|++||++.....     +..+..|..    .|
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP-----VANMEPVQGENKRDC  167 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC-----SEEECCCTTSCCCCE
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc-----ceeccccCCCCCCce
Confidence            999999887557888999999999954      789999999999999999999887621     445544443    78


Q ss_pred             eEEE----ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC---CCCeEEEEecCCCCcEEEEeCC
Q 012679          319 KAIA----WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNK---NERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       319 ~~l~----~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      .+++    |+|++ .++++++  .|+.|++||+++++......+...+.+++|+|   ++..+++  |..++.|++||+.
T Consensus       168 ~~~~~~~~~~~~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~  242 (357)
T 3i2n_A          168 WTVAFGNAYNQEE-RVVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEGKFHVFDMR  242 (357)
T ss_dssp             EEEEEECCCC-CC-CEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTTEEEEEEEE
T ss_pred             EEEEEEeccCCCC-CEEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCCeEEEEeCc
Confidence            8888    67765 4555555  89999999999999988888889999999999   8999888  4589999999998


Q ss_pred             CceeeEEEe-----CCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCcc
Q 012679          392 SMVKMAELS-----GHTSRVLFMAQSPDGC-TVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       392 ~~~~~~~~~-----~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +++.+..+.     +|...|++++|+|++. +|++++.||.|++||+......
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            877665554     9999999999999998 8999999999999999876543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.8e-32  Score=258.58  Aligned_cols=266  Identities=20%  Similarity=0.332  Sum_probs=217.5

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCce-----eeEEecCCCcccEEEEEe-
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANR-----QLRTLRGGHRSRVGSLAW-  234 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~-----~~~~~~~~~~~~v~~l~~-  234 (458)
                      .++++...+.+.....++.+|.+.|++|+|+|+ +++||+|+.||+|+|||+.+.+     ....+.+ |...|.+++| 
T Consensus        17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s   95 (340)
T 4aow_A           17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVIS   95 (340)
T ss_dssp             ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEEC
T ss_pred             cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEEC
Confidence            456666656565556689999999999999997 6899999999999999987653     4556666 9999999999 


Q ss_pred             -CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679          235 -NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE  313 (458)
Q Consensus       235 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  313 (458)
                       ++.+|++|+.|+.|++|+...... ......+...+..+.+++++++|++|+.|+.+++||......     .......
T Consensus        96 ~dg~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-----~~~~~~~  169 (340)
T 4aow_A           96 SDGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-----YTVQDES  169 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-----EEECSSS
T ss_pred             CCCCEEEEEcccccceEEeecccce-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-----EEEEecc
Confidence             478999999999999999987654 556667888899999999999999999999999999876533     2455678


Q ss_pred             cccceeEEEecCCCCc-EEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          314 HTSAVKAIAWCPFQSN-LLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       314 h~~~v~~l~~~p~~~~-ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      |...+..++|++++.. ++++++  .|+.|++||+.+++++..+.. ...|.+++|+|++++|++  |..|+.|++||+.
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~  245 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLN  245 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETT
T ss_pred             ccCcccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEec
Confidence            9999999999987654 566666  899999999999999888754 568999999999999998  5589999999999


Q ss_pred             CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       392 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +.+.+..+..+ ..|.+++|+|++.++ +++.|+.|++||+........
T Consensus       246 ~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          246 EGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             TTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEE
T ss_pred             cCceeeeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEe
Confidence            99999988755 579999999988655 567799999999987655433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.6e-33  Score=267.50  Aligned_cols=245  Identities=19%  Similarity=0.249  Sum_probs=211.7

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~  256 (458)
                      .|.++|++++|+|++++|++|+.||.|++||+.+++  .+..+.. |...|.+++|+  +.+|++++.||.|++||+++.
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            478899999999999999999999999999999987  7888876 99999999994  789999999999999999876


Q ss_pred             Cee-EEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          257 DHI-VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       257 ~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ... ...+..|...|.+++|+|++++|++|+.|+.|++||++.......  .......|...|.+++|+|++. ++++++
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~~~~  161 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV--CKHIKKPIRSTVLSLDWHPNSV-LLAAGS  161 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE--EEEECTTCCSCEEEEEECTTSS-EEEEEE
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee--eeeeecccCCCeeEEEEcCCCC-EEEEEc
Confidence            532 234467999999999999999999999999999999987653111  1223357899999999999754 555655


Q ss_pred             CCCCCeEEEEEC------------------CCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679          336 GGGDRCIKFWNT------------------HTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM  396 (458)
Q Consensus       336 g~~d~~i~lwd~------------------~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~  396 (458)
                        .|+.|++||+                  .+++++..+. +...+.+++|+|+++.+++  +..|+.|++||+.+++.+
T Consensus       162 --~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          162 --CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             --TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEE
T ss_pred             --CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcee
Confidence              8999999995                  4677777774 4567999999999999988  448999999999999999


Q ss_pred             EEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          397 AELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       397 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ..+..|...|.+++|+|++.+|++| .|+.|++|++..
T Consensus       238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999999999999999988877 999999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=279.85  Aligned_cols=245  Identities=12%  Similarity=0.230  Sum_probs=205.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----------eeEEecCCCc------------ccEEEEEeC--C
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----------QLRTLRGGHR------------SRVGSLAWN--N  236 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~~~~------------~~v~~l~~~--~  236 (458)
                      +.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+ |.            ..|.+++|+  +
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCC
Confidence            46889999999999999999999999999998877           4667776 88            889999995  3


Q ss_pred             --CeEEEEeCCCcEEEEEccCCCee--------------------------------------EEE-EcccccceEeEEE
Q 012679          237 --HILTTGGMDGLIINNDVRVRDHI--------------------------------------VET-YRGHNQEVCGLKW  275 (458)
Q Consensus       237 --~~l~sg~~dg~i~vwd~~~~~~~--------------------------------------~~~-~~~h~~~v~~l~~  275 (458)
                        ..|++++.||.|++||+......                                      ... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              58999999999999998753321                                      112 3689999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeee-------eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          276 SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLH-------RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       276 spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      +|++++|++| .|+.|++||++.....     +.       .+..|...|.+++|+|++..++++++  .|+.|++||++
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~  257 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRS-----FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMR  257 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEE-----EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCce-----eeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECc
Confidence            9999999998 8999999999843220     22       36689999999999998767888877  89999999999


Q ss_pred             CCCe----eEEEeCCC-------------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCc-----
Q 012679          349 TGAC----LNSVDTGS-------------QVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSR-----  405 (458)
Q Consensus       349 ~~~~----~~~~~~~~-------------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~-----  405 (458)
                      +++.    +..+..+.             .|.+++|+|++++|+++  .. +.|++||+.+ ++.+..+.+|...     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~  334 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR--DY-LSVKVWDLNMENRPVETYQVHEYLRSKLC  334 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE--ES-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe--eC-CeEEEEeCCCCccccceeecccccccccc
Confidence            9887    66776543             89999999999999984  35 9999999997 8888899888642     


Q ss_pred             ----------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          406 ----------VLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       406 ----------V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                                +..++|+|++++|++|+.||.|++||+.++...
T Consensus       335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                      334999999999999999999999999887654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=262.57  Aligned_cols=283  Identities=13%  Similarity=0.169  Sum_probs=224.4

Q ss_pred             ccccceeeccCC-----CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          141 DYYLNLLDWGSS-----NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       141 d~~~~~~~~~~~-----~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ...+++++|+++     .+++++.||.|++||+.+........+.+|...|++++|+|++++|++|+.||.|++||+.++
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  118 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN  118 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence            346899999985     377778899999999998443334667789999999999999999999999999999999999


Q ss_pred             eeeEEecCCCcccEEEEEe--C--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679          216 RQLRTLRGGHRSRVGSLAW--N--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                      +.+....  |...|.+++|  +  +.+|++++.||.|++||+++... +..+..+. .+.++.+.  ...+++++.++.+
T Consensus       119 ~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i  192 (368)
T 3mmy_A          119 QAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPE-RCYCADVI--YPMAVVATAERGL  192 (368)
T ss_dssp             EEEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSS-CEEEEEEE--TTEEEEEEGGGCE
T ss_pred             Cceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCC-CceEEEec--CCeeEEEeCCCcE
Confidence            8777544  9999999999  4  57899999999999999997764 45555554 56666665  4588999999999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC---cEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCC-----
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS---NLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGS-----  360 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~-----  360 (458)
                      .+||++.....    .......+...+.++++.+...   ..+++++  .|+.|++||+...   ..+..+..+.     
T Consensus       193 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  266 (368)
T 3mmy_A          193 IVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTN  266 (368)
T ss_dssp             EEEECSSSCEE----EEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred             EEEEeccccch----hhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeeccccc
Confidence            99999875431    0111122333445555544322   2366665  8999999999987   4455555433     


Q ss_pred             --------CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          361 --------QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       361 --------~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                              .|.+++|+|++++|++  |..||.|++||+.+++.+..+.+|...|++++|+|+|++|++++.|+..+.|++
T Consensus       267 ~~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          267 TSAPQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             -CCCEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             ccccccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence                    6999999999999988  458999999999999999999999999999999999999999999987777776


Q ss_pred             CCCCc
Q 012679          433 FGAPQ  437 (458)
Q Consensus       433 ~~~~~  437 (458)
                      ...+.
T Consensus       345 ~~~~~  349 (368)
T 3mmy_A          345 YNPQK  349 (368)
T ss_dssp             CCTTS
T ss_pred             cCCCc
Confidence            65443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-32  Score=271.85  Aligned_cols=281  Identities=13%  Similarity=0.101  Sum_probs=227.7

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCee-eEEEec----------------------------------------
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTS-ELVTVD----------------------------------------  180 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~-~~~~~~----------------------------------------  180 (458)
                      .++++.|++ +.+++++.++.|++||+.+|+.. .+..+.                                        
T Consensus         6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK   85 (450)
T ss_dssp             CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred             cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence            466788877 55888889999999999998811 122222                                        


Q ss_pred             --------------CCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCC--CceeeEEecC-CCcccEEEEEeC--CCeEE
Q 012679          181 --------------DENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDST--ANRQLRTLRG-GHRSRVGSLAWN--NHILT  240 (458)
Q Consensus       181 --------------~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~--~~~~~~~~~~-~~~~~v~~l~~~--~~~l~  240 (458)
                                    +|.+.|++++|+|+|++| ++|+.||.|+|||+.  +++.+..+.. .|...|.+++|+  +.+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  165 (450)
T 2vdu_B           86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI  165 (450)
T ss_dssp             --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence                          344479999999999996 889999999999999  8888887753 277899999994  68999


Q ss_pred             EEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCCCCCcceeeee-ecc
Q 012679          241 TGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEE  313 (458)
Q Consensus       241 sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~  313 (458)
                      +|+.+|.|++|++.....   ....+.+|...|.+++|+|+   +++|++|+.|+.|++||+..+..      +.. +.+
T Consensus       166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~------~~~~~~~  239 (450)
T 2vdu_B          166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI------VDKWLFG  239 (450)
T ss_dssp             EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC------EEEECCC
T ss_pred             EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce------eeeeecC
Confidence            999999999999987653   22366789999999999999   99999999999999999987765      555 568


Q ss_pred             cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--------------------------CCCeEEEEE
Q 012679          314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--------------------------GSQVCALLW  367 (458)
Q Consensus       314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--------------------------~~~v~~~~~  367 (458)
                      |...|.+++|+ + ..++++++  .|+.|++||+.+++++..+..                          ...+..+.|
T Consensus       240 h~~~v~~~~~s-d-~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          240 HKHFVSSICCG-K-DYLLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CSSCEEEEEEC-S-TTEEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCCceEEEEEC-C-CCEEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            99999999999 5 45566665  899999999999998888753                          246889999


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeC--CCc---eeeEEEeCCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEecCCC
Q 012679          368 NKNERELLSSHGFTQNQLTLWKY--PSM---VKMAELSGHTSRVLFMAQSPDGCTVASAAA------DETLRFWNVFGA  435 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~--~~~---~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~i~iW~~~~~  435 (458)
                      +|++++++++++ .++.|+||++  .+.   +.+..+.+| ..|.+++|+|++.++++++.      +..|.+|.+...
T Consensus       316 ~~~~~~l~~~~~-~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          316 SKNLPFVAFFVE-ATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CSSSSEEEEEET-TCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             eCCCCEEEEEEC-CCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            999999998642 6899999999  555   778888888 88999999996543333332      556899988654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-34  Score=279.62  Aligned_cols=243  Identities=14%  Similarity=0.160  Sum_probs=198.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc--eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN--RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      +.++|++++|+|+|++||+|+.||.|+|||+.++  +.+..+.. |...|.+++|+  +.+|++|+.||.|++||+.++.
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            5678999999999999999999999999999988  67777776 99999999995  6899999999999999998765


Q ss_pred             --eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEe
Q 012679          258 --HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       258 --~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~  334 (458)
                        .....+.+|...|.+++|+|++++|++|+.|+.|++||++.....   .....+.. |...|.+++|+|++ .+++++
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~  164 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---WVSKHLKRPLRSTILSLDWHPNN-VLLAAG  164 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---CCCEEECSSCCSCEEEEEECTTS-SEEEEE
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---eeeeEeecccCCCeEEEEEcCCC-CEEEEE
Confidence              235667789999999999999999999999999999999887531   11455666 99999999999975 456666


Q ss_pred             CCCCCCeEEEEECC------------------CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-
Q 012679          335 GGGGDRCIKFWNTH------------------TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-  395 (458)
Q Consensus       335 ~g~~d~~i~lwd~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-  395 (458)
                      +  .|+.|++||+.                  .++++..+.+...|.+++|+|++++|++  |..|+.|++||+.+++. 
T Consensus       165 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          165 C--ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY--AGHDSSVTIAYPSAPEQP  240 (377)
T ss_dssp             E--SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEE--EETTTEEC-CEECSTTSC
T ss_pred             e--CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEE--EeCCCcEEEEECCCCCCc
Confidence            5  89999999985                  3445555556678999999999999998  45899999999999887 


Q ss_pred             ---eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          396 ---MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       396 ---~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                         +..+.+|...|.+++|+|+|++|++++.|+.+ +|+...
T Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          241 PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence               88899999999999999999999988766655 676653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-33  Score=266.40  Aligned_cols=242  Identities=22%  Similarity=0.390  Sum_probs=199.4

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCce-
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANR-  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~-  216 (458)
                      ..+++++|++  +.+++++.|++|+|||+.++....+..+.+|.+.|++++|++  ++++|++|+.||+|+|||+.+++ 
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~   93 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW   93 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence            3577888876  568888999999999998876555778899999999999986  48999999999999999998874 


Q ss_pred             -eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCC-----------
Q 012679          217 -QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSAS-----------  278 (458)
Q Consensus       217 -~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd-----------  278 (458)
                       .+..+.+ |...|.+++|+    +.+|++|+.||.|++||++....  ....+.+|...|.+++|+|+           
T Consensus        94 ~~~~~~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  172 (316)
T 3bg1_A           94 EKSHEHAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPS  172 (316)
T ss_dssp             CEEEEECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CC
T ss_pred             eEEEEccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccccc
Confidence             4556665 99999999995    46899999999999999987642  23456789999999999997           


Q ss_pred             ------CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC---CcEEEEeCCCCCCeEEEEECCC
Q 012679          279 ------GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ---SNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       279 ------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                            +++|++|+.|+.|++||++....   ...+..+.+|...|.+++|+|++   ..+|++++  .|++|++||+.+
T Consensus       173 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~  247 (316)
T 3bg1_A          173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDD  247 (316)
T ss_dssp             SCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSS
T ss_pred             ccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccC
Confidence                  47899999999999999865421   12356788999999999999975   36788877  999999999986


Q ss_pred             CC----eeEE-EeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          350 GA----CLNS-VDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       350 ~~----~~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      ..    .... ..+...|.+++|+|+++.|+++  ..|+.|+||+..
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~--~~D~~v~lw~~~  292 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVS--GGDNKVTLWKES  292 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE--ESSSCEEEEEEC
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE--cCCCeEEEEEEC
Confidence            31    1112 2356789999999999999984  489999999975

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-34  Score=288.72  Aligned_cols=227  Identities=12%  Similarity=0.105  Sum_probs=185.3

Q ss_pred             EEEEecCCeEEEEeCCCceee----EEecCCCcccEEEEEeCC--------CeEEEEeCCCcEEEEEccCCCe-------
Q 012679          198 IAIGLNNCQVQLWDSTANRQL----RTLRGGHRSRVGSLAWNN--------HILTTGGMDGLIINNDVRVRDH-------  258 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~~~~----~~~~~~~~~~v~~l~~~~--------~~l~sg~~dg~i~vwd~~~~~~-------  258 (458)
                      |++++.||+|+|||+.+++..    ..+.. |...|.+++|++        .+|++|+.||+|++||+.....       
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEE-CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEe-cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            334557889999999877643    23444 788999999964        5999999999999999976532       


Q ss_pred             ---eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEE--EecCCCCcEEEE
Q 012679          259 ---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI--AWCPFQSNLLAT  333 (458)
Q Consensus       259 ---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~ll~s  333 (458)
                         ....+.+|...|++++|++++ .|++|+.||+|++||++++...     ...+..|...|.++  +|+|++..+|++
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~-----~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP-----SFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC-----SEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc-----eEEeecccccEEEEEEEcCCCCCeEEEE
Confidence               124677899999999999864 8999999999999999876431     45678899999999  567765588888


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEE
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA  410 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~  410 (458)
                      ++  .|++|++||+++++++..+..+   ..+.+++|+|++..+++  +..|+.|++||+.++..+..+.+|.+.|++++
T Consensus       329 ~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          329 VA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITAIG  404 (524)
T ss_dssp             EE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             ec--cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE--eCCCCcEEEEECcccccceeeecCCCceEEEE
Confidence            87  9999999999998876655432   34789999999998887  44789999999999998888999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          411 QSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       411 ~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      |+|+|++|++|+.||+|++||+...
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             eCCCCCeEEEEECCCEEEEEechHh
Confidence            9999999999999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=257.15  Aligned_cols=263  Identities=16%  Similarity=0.235  Sum_probs=225.0

Q ss_pred             CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679          170 DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGL  247 (458)
Q Consensus       170 ~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  247 (458)
                      .|.......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.. |...|.+++|+  +.+|++++.||.
T Consensus        19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~   97 (369)
T 3zwl_B           19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYS   97 (369)
T ss_dssp             SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            355566778899999999999999999999999999999999999999999987 99999999995  789999999999


Q ss_pred             EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCCCCCCcc-----eeeeeeccccc-
Q 012679          248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMASSNSVT-----QWLHRLEEHTS-  316 (458)
Q Consensus       248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~~~~~~~-----~~~~~~~~h~~-  316 (458)
                      |++||+.++.. +..+. |...|.+++|+|++++|++++.+     +.|++||+.........     .....+..|.. 
T Consensus        98 i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           98 IKLWDVSNGQC-VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEETTTCCE-EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEEEECCCCcE-EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999998775 44444 88899999999999999999999     99999998876542211     12344555666 


Q ss_pred             -ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          317 -AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       317 -~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                       .+.+++|+|++..+ ++++  .|+.|++||+.+ ++.+..+. +...|.+++|+|++.+|+++  ..|+.|++||+.++
T Consensus       176 ~~~~~~~~~~~~~~l-~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          176 DAATVAGWSTKGKYI-IAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS--SRDTNSFLVDVSTL  250 (369)
T ss_dssp             CCEEEEEECGGGCEE-EEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTC
T ss_pred             cceeEEEEcCCCCEE-EEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe--cCCceEEEEECCCC
Confidence             89999999976554 5554  899999999999 67777776 46789999999999999884  48999999999999


Q ss_pred             eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC--------------cEEEEecCCCCccccc
Q 012679          394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADE--------------TLRFWNVFGAPQVISK  441 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--------------~i~iW~~~~~~~~~~~  441 (458)
                      +.+..+. +...+..++|+|+++++++++.++              .+++||+.........
T Consensus       251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  311 (369)
T 3zwl_B          251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV  311 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred             ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence            9998887 778899999999999999999998              8999999887765543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-32  Score=257.89  Aligned_cols=248  Identities=20%  Similarity=0.303  Sum_probs=215.5

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEE
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINN  251 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vw  251 (458)
                      .....+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+.. |...|.+++|  ++.+|++|+.||.|++|
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            346788999999999999 9999999999999999999999998888887 9999999999  47899999999999999


Q ss_pred             EccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679          252 DVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       252 d~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      ++....  .....+.+|...|.++.|  ++++|++++.||.|++||  ...      ....+..|...|.+++|.|....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~------~~~~~~~~~~~v~~~~~~~~~~~  156 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS------LVYNLQAHNASVWDAKVVSFSEN  156 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE------EEEEEECCSSCEEEEEEEETTTT
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc------EEEecccCCCceeEEEEccCCCC
Confidence            987653  346678899999999999  678999999999999999  222      26778889999999999995566


Q ss_pred             EEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679          330 LLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL  407 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~  407 (458)
                      ++++++  .|+.|++||  .++....+.  +...+.+++|+|++. +++  |..++.|++||+.+++.+..+.+|...|+
T Consensus       157 ~l~~~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          157 KFLTAS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVY  229 (313)
T ss_dssp             EEEEEE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEEE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence            777766  899999999  455555554  567899999999998 665  55899999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      +++|+|++ .|++++.||.|++||+..+......
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence            99999999 5889999999999999888765543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.1e-32  Score=282.32  Aligned_cols=269  Identities=17%  Similarity=0.300  Sum_probs=232.3

Q ss_pred             cceeeccC----CCeEEEEcCCEEEEEECCCC------CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEE
Q 012679          144 LNLLDWGS----SNVLAIALGSTVYLWDASDG------TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQL  209 (458)
Q Consensus       144 ~~~~~~~~----~~~la~~~d~~v~iwd~~~~------~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~i  209 (458)
                      +++++|++    ..+++++.||.|++||+.++      +...+..+..|...|.+++|+|++++|++++.+    +.|.+
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~  146 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS  146 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEE
Confidence            78899987    34778888999999999866      445577788899999999999999999999988    78999


Q ss_pred             EeCCCceeeEEecCCCcccEEEEEeCC--C-eEEEEeCCCcEEEEEccCCCeeEEEEccccc---ceEeEEEcCC-CCEE
Q 012679          210 WDSTANRQLRTLRGGHRSRVGSLAWNN--H-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQ---EVCGLKWSAS-GQQL  282 (458)
Q Consensus       210 wd~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~---~v~~l~~spd-~~~l  282 (458)
                      ||  .++.+..+.. |...|.+++|++  . .+++++.||.|++||+.+.. ....+.+|..   .|.+++|+|+ +++|
T Consensus       147 ~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (615)
T 1pgu_A          147 WD--SGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSGEFV  222 (615)
T ss_dssp             TT--TCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             EE--CCCcceeeec-CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-eeeeecccCCCCceEEEEEECCCCCCEE
Confidence            98  6677788876 999999999953  3 89999999999999998665 4678889999   9999999999 9999


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcceeeeee-c---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVTQWLHRL-E---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      ++++.||.|++||+.++..      +..+ .   .|...|.+++|+ ++ .++++++  .|+.|++||+.+++.+..+..
T Consensus       223 ~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          223 ITVGSDRKISCFDGKSGEF------LKYIEDDQEPVQGGIFALSWL-DS-QKFATVG--ADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             EEEETTCCEEEEETTTCCE------EEECCBTTBCCCSCEEEEEES-SS-SEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCCE------eEEecccccccCCceEEEEEc-CC-CEEEEEc--CCCcEEEEECCCCcEEEEEcC
Confidence            9999999999999988765      6666 5   899999999999 54 5555555  899999999999999998876


Q ss_pred             C-----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          359 G-----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       359 ~-----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      .     ..+.++.|. ++..+++  |..++.|++||+.+++.+..+.+|...|++++| |+   |++++.||.|++|++.
T Consensus       293 ~~~~~~~~~~~~~~~-~~~~l~~--~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          293 DKQQLGNQQVGVVAT-GNGRIIS--LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             CTTCGGGCEEEEEEE-ETTEEEE--EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred             CCCcccCceeEEEeC-CCCeEEE--EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence            5     568888886 8888888  558999999999999999999999999999999 87   7778888888888765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.3e-32  Score=303.60  Aligned_cols=284  Identities=20%  Similarity=0.291  Sum_probs=242.6

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCcee
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ..+.+++|++  ..+++++.|+.|++||+.+++.  +..+.+|...|.+++|+|  ++.++++|+.||.|++||+.+++.
T Consensus       658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            4678899987  3578888899999999999987  777889999999999999  566899999999999999999999


Q ss_pred             eEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeE-----------------------------------
Q 012679          218 LRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIV-----------------------------------  260 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~-----------------------------------  260 (458)
                      +..+.+ |...|.+++|+  +.+|++|+.||.|++||++++....                                   
T Consensus       736 ~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          736 RNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             EEEECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             hheecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence            999987 99999999994  7899999999999999987653211                                   


Q ss_pred             -------------------EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEE
Q 012679          261 -------------------ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI  321 (458)
Q Consensus       261 -------------------~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  321 (458)
                                         ....+|...|.+++|+|+++++++++.||.|++||+.++..      +..+.+|...|.++
T Consensus       815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~h~~~v~~v  888 (1249)
T 3sfz_A          815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK------VADCRGHLSWVHGV  888 (1249)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE------EEEECCCSSCEEEE
T ss_pred             EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce------eeecCCCccceEEE
Confidence                               11126788999999999999999999999999999988765      77888999999999


Q ss_pred             EecCCCCcEEEEeCCCCCCeEEEEECCCCCe-----------------------------e---------EEEeCCCCeE
Q 012679          322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-----------------------------L---------NSVDTGSQVC  363 (458)
Q Consensus       322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-----------------------------~---------~~~~~~~~v~  363 (458)
                      +|+|++.. +++++  .|+.|++||+.++..                             +         ........+.
T Consensus       889 ~~spdg~~-l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          889 MFSPDGSS-FLTAS--DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             EECTTSSE-EEEEE--TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             EECCCCCE-EEEEe--CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            99997655 45554  899999999653210                             0         0112345789


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      +++|+|+++.+++  |..+|.|.+|++.+++.+..+.+|...|++++|+|+|++|++++.||.|++|++.++....
T Consensus       966 ~~~~sp~g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          966 CCCLSPHLEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             EEEECTTSSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred             EEEEcCCCCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence            9999999999998  5689999999999999999999999999999999999999999999999999998876543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-32  Score=262.84  Aligned_cols=245  Identities=11%  Similarity=0.121  Sum_probs=208.9

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecCCCcccEEEEEe--CCC-eEEEEeCCCcEEEEE
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRGGHRSRVGSLAW--NNH-ILTTGGMDGLIINND  252 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~~~~~~v~~l~~--~~~-~l~sg~~dg~i~vwd  252 (458)
                      ..+|.+.|++++|+|++++|++|+.||.|+|||+.+++   ....+.. |...|.+++|  ++. +|++|+.||.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            45799999999999999999999999999999998877   2344444 9999999999  478 999999999999999


Q ss_pred             c-cCCCeeEEEEcc--cccceEeEEEcCCCCEEEEEECCCcEEEEeCCC---------CCCCCcceeeeeecccccceeE
Q 012679          253 V-RVRDHIVETYRG--HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM---------ASSNSVTQWLHRLEEHTSAVKA  320 (458)
Q Consensus       253 ~-~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~h~~~v~~  320 (458)
                      + ....  ...+.+  |...|.+++|+| +++|++++.|+.|++||++.         ...      +..+. |...|.+
T Consensus        86 ~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~-~~~~v~~  155 (342)
T 1yfq_A           86 LIGSPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN------SNNTK-VKNKIFT  155 (342)
T ss_dssp             SSSSSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC------SSSSS-SCCCEEE
T ss_pred             eccCCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe------eeEEe-eCCceEE
Confidence            9 7665  367778  999999999999 99999999999999999886         443      34444 8899999


Q ss_pred             EEecCCCCcEEEEeCCCCCCeEEEEECCC-CCee---EEEeCCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCc--
Q 012679          321 IAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACL---NSVDTGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSM--  393 (458)
Q Consensus       321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~--  393 (458)
                      ++|+|++   +++++  .|+.|++||+++ +...   ....+...+.+++|+| +++.+++  |..+|.|++|++...  
T Consensus       156 ~~~~~~~---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          156 MDTNSSR---LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             EEECSSE---EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCC
T ss_pred             EEecCCc---EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCc
Confidence            9999965   55555  899999999998 5532   2334567899999999 9999988  448999999999887  


Q ss_pred             ----eeeEEEeCCCC---------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          394 ----VKMAELSGHTS---------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       394 ----~~~~~~~~h~~---------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                          +....+.+|..         .|.+++|+|++++|++++.||.|++||+..+..+...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence                77888888865         9999999999999999999999999999887765543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.9e-32  Score=284.44  Aligned_cols=253  Identities=18%  Similarity=0.278  Sum_probs=213.3

Q ss_pred             EEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCc-----eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCc
Q 012679          176 LVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTAN-----RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGL  247 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~-----~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  247 (458)
                      ...+.+|.+.|++|+|+|+ +++|++|+.||+|+|||+.+.     .....+.+ |...|.+++|+  +.+|++|+.||.
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEeCCCc
Confidence            3467899999999999986 479999999999999998763     34456666 99999999994  789999999999


Q ss_pred             EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      |++||+.++.. ...+.+|...|.+++|+|++++|++|+.|++|++||......   ........+|...|.+++|+|++
T Consensus       454 v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          454 LRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEEEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc---eeeccCCCCCCCcEEEEEEeCCC
Confidence            99999987654 678889999999999999999999999999999999764322   01111235788999999999976


Q ss_pred             C-cEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc
Q 012679          328 S-NLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR  405 (458)
Q Consensus       328 ~-~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~  405 (458)
                      . .++++++  .|+.|++||++++++...+. +...|.+++|+|+++.+++  |..|+.|++||+.+++.+..+.. ...
T Consensus       530 ~~~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s--g~~Dg~i~iwd~~~~~~~~~~~~-~~~  604 (694)
T 3dm0_A          530 LQPTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS--GGKDGVVLLWDLAEGKKLYSLEA-NSV  604 (694)
T ss_dssp             SSCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSBCEEEETTTTEEEECCBC-SSC
T ss_pred             CcceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCceEEEecC-CCc
Confidence            3 5777776  99999999999999988886 4568999999999999998  55899999999999999888764 467


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccc
Q 012679          406 VLFMAQSPDGCTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       406 V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      |.+++|+|++.+|++++ |+.|++||+.....+.
T Consensus       605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE  637 (694)
T ss_dssp             EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence            99999999998887665 5669999998876544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-33  Score=274.95  Aligned_cols=259  Identities=15%  Similarity=0.196  Sum_probs=209.4

Q ss_pred             EECCCCCeeeEEEe-cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCC---ce---eeEEecCCCcccEEEEEeC--
Q 012679          166 WDASDGTTSELVTV-DDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTA---NR---QLRTLRGGHRSRVGSLAWN--  235 (458)
Q Consensus       166 wd~~~~~~~~~~~~-~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~---~~---~~~~~~~~~~~~v~~l~~~--  235 (458)
                      |+. +++.  +..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+   +.   ....+  .|...|.+++|+  
T Consensus        48 w~~-~g~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~  122 (437)
T 3gre_A           48 GNL-RGKL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN  122 (437)
T ss_dssp             GGC-CCCE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT
T ss_pred             ccc-cceE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC
Confidence            773 3444  6677 88999999999999 999999999999999999876   43   23333  299999999994  


Q ss_pred             CCeEEEEeCCCcEEEEEcc---CCCeeEEEEc----------c--cccceEeEE--EcCCCCEEEEEECCCcEEEEeCCC
Q 012679          236 NHILTTGGMDGLIINNDVR---VRDHIVETYR----------G--HNQEVCGLK--WSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~---~~~~~~~~~~----------~--h~~~v~~l~--~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +.+|++|+.||.|++||+.   .+.. .....          .  +...+.++.  +++++.+|++|+.||.|++||++.
T Consensus       123 ~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          123 FDAFAVSSKDGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             SSEEEEEETTSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEeCCCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            6899999999999999995   3322 22221          1  455667776  668999999999999999999988


Q ss_pred             CCCCCcceeeeeecc--cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcC----C
Q 012679          299 ASSNSVTQWLHRLEE--HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNK----N  370 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~----~  370 (458)
                      ...      +..+..  |...|.+++|+|+ ..++++++  .|+.|++||+++++++..+.  +...|.+++|+|    +
T Consensus       202 ~~~------~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          202 LER------LQIIENSPRHGAVSSICIDEE-CCVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             CCE------EEEEECCGGGCCEEEEEECTT-SCEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             Cee------eEEEccCCCCCceEEEEECCC-CCEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence            766      677777  8999999999997 55566665  89999999999999998874  455799997765    4


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--------------------------CCcEEEEEEcCCCCEEEEEeCC
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--------------------------TSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--------------------------~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      +.++++  |..|+.|++||+.+++.+..+.+|                          ...|++++|+ ++++|++|+.|
T Consensus       273 ~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d  349 (437)
T 3gre_A          273 SVIVVG--GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT  349 (437)
T ss_dssp             EEEEEE--ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred             ccEEEE--EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence            667776  668999999999999988887754                          4558888999 77899999999


Q ss_pred             CcEEEEecCCCCcccccC
Q 012679          425 ETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       425 g~i~iW~~~~~~~~~~~~  442 (458)
                      |.|++||+.+++......
T Consensus       350 ~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          350 SSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             TEEEEEETTCGGGCEEEE
T ss_pred             CeEEEEECCCcccceEEe
Confidence            999999999887665443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-32  Score=290.94  Aligned_cols=282  Identities=13%  Similarity=0.128  Sum_probs=208.1

Q ss_pred             cccceeeccCC---CeEEEEcCCEEEEEECCCCCeeeEEEecCC------------------CCCEEEEEEcCCCCEEEE
Q 012679          142 YYLNLLDWGSS---NVLAIALGSTVYLWDASDGTTSELVTVDDE------------------NGPVTSVNWAPDGRHIAI  200 (458)
Q Consensus       142 ~~~~~~~~~~~---~~la~~~d~~v~iwd~~~~~~~~~~~~~~h------------------~~~V~~v~~s~~g~~la~  200 (458)
                      ..+.+++|++.   .+++++.|+.| +||+.+++.  +..+..|                  ...|++++|+|+|++||+
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las  228 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT  228 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence            35888999984   57777889999 999998876  4444443                  578999999999999999


Q ss_pred             EecCCeEEEEeCCCceeeEE--ec---C------------CCcccEEEEEe----CC---CeEEEEeCC-----CcEEEE
Q 012679          201 GLNNCQVQLWDSTANRQLRT--LR---G------------GHRSRVGSLAW----NN---HILTTGGMD-----GLIINN  251 (458)
Q Consensus       201 g~~dg~v~iwd~~~~~~~~~--~~---~------------~~~~~v~~l~~----~~---~~l~sg~~d-----g~i~vw  251 (458)
                      |+.||.|++||+.+++.+..  +.   .            .|...|.+++|    ++   .+|++|+.+     ..+.+|
T Consensus       229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~  308 (902)
T 2oaj_A          229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI  308 (902)
T ss_dssp             EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred             EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence            99999999999999887653  21   1            13457888888    22   356666443     144444


Q ss_pred             E-----------------------------------------------------------------------ccCCCeeE
Q 012679          252 D-----------------------------------------------------------------------VRVRDHIV  260 (458)
Q Consensus       252 d-----------------------------------------------------------------------~~~~~~~~  260 (458)
                      +                                                                       +.++....
T Consensus       309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~  388 (902)
T 2oaj_A          309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD  388 (902)
T ss_dssp             EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred             ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence            4                                                                       32221100


Q ss_pred             E----------------------------------------EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          261 E----------------------------------------TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       261 ~----------------------------------------~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      .                                        .+.+|...+.+++|+|++++|++|+.|++|++||+..+.
T Consensus       389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~  468 (902)
T 2oaj_A          389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD  468 (902)
T ss_dssp             CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT
T ss_pred             ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc
Confidence            0                                        012233334445667899999999999999999998874


Q ss_pred             CCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC------------------------
Q 012679          301 SNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------------------------  351 (458)
Q Consensus       301 ~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~------------------------  351 (458)
                      ..........+.     +|...|.+++|+|++. +||+|+  .|++|++||+.+++                        
T Consensus       469 ~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs--~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (902)
T 2oaj_A          469 IQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSI--ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN  545 (902)
T ss_dssp             TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEE--TTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred             ccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEe--cCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence            321111111122     7889999999999765 566666  89999999998763                        


Q ss_pred             ---------------------eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-----EEe-CCC
Q 012679          352 ---------------------CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-----ELS-GHT  403 (458)
Q Consensus       352 ---------------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-----~~~-~h~  403 (458)
                                           ++..+. +...|++++|+|+| +|++  |+.|+.|+|||+.+...+.     .+. +|.
T Consensus       546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs--gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~  622 (902)
T 2oaj_A          546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI--AYAAGSLMLIDRRGPAIIYMENIREISGAQS  622 (902)
T ss_dssp             SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE--EETTSEEEEEETTTTEEEEEEEGGGTCSSCC
T ss_pred             CccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE--EeCCCcEEEEECCCCeEEEEeehhHhccccc
Confidence                                 344554 56789999999999 7777  5689999999998877654     233 899


Q ss_pred             CcEEEEEEc-----CCC---CEEEEEeCCCcEEEEec
Q 012679          404 SRVLFMAQS-----PDG---CTVASAAADETLRFWNV  432 (458)
Q Consensus       404 ~~V~~l~~s-----pdg---~~l~s~s~Dg~i~iW~~  432 (458)
                      +.|++++|+     |||   ++|++|+.|++|++||+
T Consensus       623 ~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          623 ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            999999999     885   89999999999999999

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-32  Score=272.47  Aligned_cols=253  Identities=17%  Similarity=0.200  Sum_probs=204.9

Q ss_pred             EecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEec-CCCcccEEEEEeC---CCeEEEEeCCCcEEEEE
Q 012679          178 TVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLR-GGHRSRVGSLAWN---NHILTTGGMDGLIINND  252 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd  252 (458)
                      ....|...|+||+|+| ++++||+|+.||.|+|||+.+++....+. .+|...|.+|+|+   +.+|++|+.||+|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            3456788999999999 67799999999999999998876544433 2499999999995   57999999999999999


Q ss_pred             ccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          253 VRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       253 ~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      +++... .....  .+...+++++|+|++++|++|+.||.|++||++...       +..+.+|...|.+++|+|++..+
T Consensus       194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-------~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          194 FKGNIL-RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-------LWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             TTSCEE-EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-------CCCSBCCSSCEEEEEECTTCSSE
T ss_pred             ccCCce-eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-------eEEEecccceEEeeeecCCCceE
Confidence            986542 22222  344568899999999999999999999999986532       56778999999999999999999


Q ss_pred             EEEeCCCCCCeEEEEECCCCCeeEEE----eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC--
Q 012679          331 LATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS--  404 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~--  404 (458)
                      +++++  .|+.|++||+++++....+    .+...|.+++|+|++.+|++  |..|+.|+|||+.++.....+.+|..  
T Consensus       266 ~~s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s--~~~D~~i~iwd~~~~~~~~~~~~~~~~~  341 (435)
T 4e54_B          266 LATAS--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT--TDQKSEIRVYSASQWDCPLGLIPHPHRH  341 (435)
T ss_dssp             EEEEE--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE--EESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred             EEEec--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE--EcCCCEEEEEECCCCccceEEecccccc
Confidence            99987  9999999999987654433    45678999999999999998  45899999999999988888776653  


Q ss_pred             ----cEEEEEEcCCCCEEEEEe------------CCCcEEEEecCCCCcccccC
Q 012679          405 ----RVLFMAQSPDGCTVASAA------------ADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       405 ----~V~~l~~spdg~~l~s~s------------~Dg~i~iW~~~~~~~~~~~~  442 (458)
                          .+....|+|++.++++++            .++.|++||+.++.......
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence                234567788777777664            23579999998887665543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3e-32  Score=262.36  Aligned_cols=247  Identities=19%  Similarity=0.317  Sum_probs=208.2

Q ss_pred             ecCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEeCCCceeeEEecC----CCcccEEEEEeC------CCeEEEEeC
Q 012679          179 VDDENGPVTSVNWAPD----GRHIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSLAWN------NHILTTGGM  244 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~----g~~la~g~~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~~------~~~l~sg~~  244 (458)
                      ..+|.+.|++++|+|+    ...+++++.++.|++||+.+++.+..+..    .|...|.+++|+      +.+|++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999984    55677777788999999998887766653    256789999994      358999999


Q ss_pred             CCcEEEEEccCCCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee---cccccceeE
Q 012679          245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL---EEHTSAVKA  320 (458)
Q Consensus       245 dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v~~  320 (458)
                      ||.|++||+.++.. +..+.+|...|.+++|+| ++++|++|+.||.|++||++.+..      +..+   ..|...|.+
T Consensus        94 dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           94 RGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL------VAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             TCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE------EEEECSTTSCSSCEEE
T ss_pred             CCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE------EEEecccccccCceeE
Confidence            99999999987764 677889999999999999 999999999999999999987755      5555   689999999


Q ss_pred             EEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-----------------------------CCCCeEEEEEcCCC
Q 012679          321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-----------------------------TGSQVCALLWNKNE  371 (458)
Q Consensus       321 l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-----------------------------~~~~v~~~~~s~~~  371 (458)
                      ++|+|++. ++++++  .|+.|++||+++++.+..+.                             +...|.++.|+  +
T Consensus       167 ~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          167 ADYDLLGE-KIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEECTTSS-EEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             EEECCCCC-EEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            99999765 455555  89999999999876554332                             56789999999  6


Q ss_pred             CeEEEEecCCCCcEEEEeCCCce--------------eeEEEeCCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEecCCC
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMV--------------KMAELSGHTSRVLFMAQSPD--GCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~--------------~~~~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      +.+++  +..|+.|++||+.++.              .+..+.+|...|++++|+|+  +++|++|+.||.|++||+..+
T Consensus       242 ~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          242 DLILS--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             TEEEE--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             CEEEE--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            67777  5589999999998764              37888999999999999999  999999999999999999887


Q ss_pred             Cccc
Q 012679          436 PQVI  439 (458)
Q Consensus       436 ~~~~  439 (458)
                      ....
T Consensus       320 ~~~~  323 (366)
T 3k26_A          320 DPHK  323 (366)
T ss_dssp             SGGG
T ss_pred             CCcc
Confidence            6543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=288.47  Aligned_cols=251  Identities=17%  Similarity=0.310  Sum_probs=210.0

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--CceeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEE
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--ANRQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIIN  250 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~v  250 (458)
                      ..+.+|.+.|++++|+|+|++|++|+.||.|+|||+.  +++.+..+.+ |...|.+++|+    +.+|++|+.||.|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            4567899999999999999999999999999999998  5567777776 99999999994    789999999999999


Q ss_pred             EEccCCC-eeEEEEcccccceEeEEEcCC--CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC-
Q 012679          251 NDVRVRD-HIVETYRGHNQEVCGLKWSAS--GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF-  326 (458)
Q Consensus       251 wd~~~~~-~~~~~~~~h~~~v~~l~~spd--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-  326 (458)
                      ||+.++. .....+.+|...|.+++|+|+  +++|++|+.||.|++||++......    ...+..|...|.+++|+|. 
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~----~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS----PIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC----CEEEECCSSCEEEEEECCCC
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc----eeEeecCCCceEEEEecCcc
Confidence            9998765 245677889999999999999  9999999999999999998874321    4556789999999999995 


Q ss_pred             -----------CCcEEEEeCCCCCCeEEEEECCCCC----eeEEEe-CCCCeEEEEEcCC---CCeEEEEecCCCCcEEE
Q 012679          327 -----------QSNLLATGGGGGDRCIKFWNTHTGA----CLNSVD-TGSQVCALLWNKN---ERELLSSHGFTQNQLTL  387 (458)
Q Consensus       327 -----------~~~ll~s~~g~~d~~i~lwd~~~~~----~~~~~~-~~~~v~~~~~s~~---~~~l~~~~g~~d~~i~i  387 (458)
                                 ...++++++  .||.|++||++++.    +...+. +...|.+++|+|+   +..+++  |..||.|++
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~i  233 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCII  233 (753)
T ss_dssp             ---------CGGGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEE
T ss_pred             cccccccccCCCCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEE
Confidence                       245566665  89999999998874    344443 4678999999999   788877  458999999


Q ss_pred             EeCCCce-----eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          388 WKYPSMV-----KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       388 wd~~~~~-----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ||+.++.     .+....+|...|++++|+|+|.+|++|+.||.|++|++....
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9998864     333445688999999999999999999999999999998544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.2e-30  Score=252.55  Aligned_cols=269  Identities=14%  Similarity=0.149  Sum_probs=222.2

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      +++++.++.|++||+.+++.  +..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..  ...+.++
T Consensus         5 ~vs~~~d~~v~v~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~   79 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNKV--TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGV   79 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred             EEEcCCCCEEEEEECCCCeE--EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccce
Confidence            55666789999999999876  45555554 59999999999987 5666899999999999999988884  3389999


Q ss_pred             EeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceee
Q 012679          233 AWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       233 ~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      +|+  +..| ++++.++.|++||+.+++. +..+.. ...+.+++|+|++++| ++++.|+.|++||+.+++.      +
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~------~  151 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV------I  151 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE------E
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE------E
Confidence            995  5656 4556779999999987764 444444 4568999999999987 6788899999999987654      5


Q ss_pred             eeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEE
Q 012679          309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTL  387 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~i  387 (458)
                      ..+..+ ..+.+++|+|++..++++++  .|+.|++||+++++++..+.....+.+++|+|+++.++++... .++.|++
T Consensus       152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~  228 (391)
T 1l0q_A          152 NTVSVG-RSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM  228 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred             EEEecC-CCcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence            555544 45689999999888878876  8999999999999999999888889999999999999886421 5899999


Q ss_pred             EeCCCceeeEEEeCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCCccc
Q 012679          388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      ||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+..++...
T Consensus       229 ~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            9999999999888765 47899999999987 677889999999998765543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.8e-31  Score=260.33  Aligned_cols=241  Identities=23%  Similarity=0.430  Sum_probs=210.5

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccC
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRV  255 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~  255 (458)
                      +....+|...|+++++  ++++|++|+.||.|++||+.+++.+..+.+ |...|.+++|++.+|++|+.||.|++||+.+
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence            3444567788999887  789999999999999999999999999987 9999999999999999999999999999998


Q ss_pred             CCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          256 RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      +.. +..+.+|...|.+++|+  +.+|++|+.||.|++||+......   .....+.+|...|.+++|.   ...+++++
T Consensus       203 ~~~-~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~---~~~l~s~~  273 (435)
T 1p22_A          203 GEM-LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFD---DKYIVSAS  273 (435)
T ss_dssp             CCE-EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC---EEEEEECCCSSCEEEEEEE---TTEEEEEE
T ss_pred             CcE-EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc---eeeeEecCCCCcEEEEEeC---CCEEEEEe
Confidence            764 67888999999999996  459999999999999999877652   1236678899999999993   35666665


Q ss_pred             CCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679          336 GGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                        .|+.|++||+++++++..+.. ...+.++.|+  +..+++  |..||.|++||+.+++.+..+.+|...|.+++|  +
T Consensus       274 --~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~  345 (435)
T 1p22_A          274 --GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D  345 (435)
T ss_dssp             --TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred             --CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence              899999999999999998874 5678899884  667777  558999999999999999999999999999999  7


Q ss_pred             CCEEEEEeCCCcEEEEecCCCC
Q 012679          415 GCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       415 g~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +.+|++|+.||.|++||+....
T Consensus       346 ~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          346 NKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHT
T ss_pred             CCEEEEEeCCCcEEEEECCCCC
Confidence            8899999999999999997654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3e-30  Score=255.05  Aligned_cols=278  Identities=11%  Similarity=0.056  Sum_probs=230.7

Q ss_pred             cceeeccCCC-eEEEE-cCCEEEEEECCCCCeeeEE---EecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          144 LNLLDWGSSN-VLAIA-LGSTVYLWDASDGTTSELV---TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       144 ~~~~~~~~~~-~la~~-~d~~v~iwd~~~~~~~~~~---~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      +.++.|+++. +++++ .++.|++||+.+++.....   .+.+|...|.+++|++++.++++++.||.|++||+.+++.+
T Consensus       125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~  204 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK  204 (433)
T ss_dssp             BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence            4467787643 44444 4678999999998874322   34578889999999999999999999999999999999998


Q ss_pred             EEecCCCcccEEEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE--------C
Q 012679          219 RTLRGGHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG--------N  287 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~--------~  287 (458)
                      ..+.. |...+.+++|+  +..+ ++++.++.|++||++++.. +..+.. ...+.+++|+|++++|++++        .
T Consensus       205 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          205 ATVDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence            88886 88999999994  5656 5566899999999987654 445544 45699999999999999988        5


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679          288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW  367 (458)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~  367 (458)
                      |+.|++||+.++..      +.. ..|...+.+++|+|++..++++++  .|+.|++||+.+++.+..+.....+.+++|
T Consensus       282 dg~i~~~d~~~~~~------~~~-~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~  352 (433)
T 3bws_A          282 GGRLGIYSMDKEKL------IDT-IGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIAL  352 (433)
T ss_dssp             CEEEEEEETTTTEE------EEE-EEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             CCeEEEEECCCCcE------Eee-ccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEE
Confidence            88999999987653      333 356678899999999888888876  899999999999999999988889999999


Q ss_pred             cCCCCeEEEEecCC-------------CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q 012679          368 NKNERELLSSHGFT-------------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA-DETLRFWNVF  433 (458)
Q Consensus       368 s~~~~~l~~~~g~~-------------d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~  433 (458)
                      +|+++.++++....             ||.|++||..+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++.
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            99999888865322             57999999999999988876 457899999999999998875 9999999986


Q ss_pred             C
Q 012679          434 G  434 (458)
Q Consensus       434 ~  434 (458)
                      +
T Consensus       432 ~  432 (433)
T 3bws_A          432 G  432 (433)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-31  Score=255.69  Aligned_cols=245  Identities=21%  Similarity=0.351  Sum_probs=205.0

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCCce-
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANR-  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~-  216 (458)
                      ..+.+++|++  ..+++++.||.|+|||+..+....+..+.+|...|++++|+++  +++|++|+.||.|++||+.+++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            3578889987  3477777899999999986666667888999999999999987  9999999999999999999987 


Q ss_pred             -eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcC-------------
Q 012679          217 -QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSA-------------  277 (458)
Q Consensus       217 -~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~sp-------------  277 (458)
                       .+..+.. |...|.+++|+    +.+|++++.||.|++||++.... ....+.+|...|.+++|+|             
T Consensus        92 ~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  170 (379)
T 3jrp_A           92 SQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK  170 (379)
T ss_dssp             EEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------C
T ss_pred             eEeeeecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCC
Confidence             6666666 99999999995    67999999999999999987742 3456678999999999999             


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC--CcEEEEeCCCCCCeEEEEECCCCCe---
Q 012679          278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTGAC---  352 (458)
Q Consensus       278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~~~---  352 (458)
                      ++.+|++|+.||.|++||++.....  ......+..|...|.+++|+|++  ..++++++  .|+.|++||+.++..   
T Consensus       171 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~  246 (379)
T 3jrp_A          171 ESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWK  246 (379)
T ss_dssp             TTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCE
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccce
Confidence            6999999999999999999876531  22356778899999999999985  66777776  899999999998742   


Q ss_pred             eEEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          353 LNSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       353 ~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      ....   .+...+.+++|+|++++|+++  ..||.|++|++...
T Consensus       247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~--~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          247 KTLLKEEKFPDVLWRASWSLSGNVLALS--GGDNKVTLWKENLE  288 (379)
T ss_dssp             EEESSSSCCSSCEEEEEECSSSCCEEEE--ESSSSEEEEEEEET
T ss_pred             eeeeccccCCCcEEEEEEcCCCCEEEEe--cCCCcEEEEeCCCC
Confidence            2222   245679999999999999985  47999999998743

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-31  Score=254.22  Aligned_cols=260  Identities=11%  Similarity=0.051  Sum_probs=205.8

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC---------CceeeEEe
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST---------ANRQLRTL  221 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~---------~~~~~~~~  221 (458)
                      +..+++++.||.|++||+.+++..  ..+.  ...|.++.|+|+   +++|+.|+.|++|+..         +++.+..+
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTI--TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCE--EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEE--EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            366899999999999999998873  3333  456888889988   9999999999999655         55556666


Q ss_pred             cCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEE-cccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          222 RGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETY-RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       222 ~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      ..+|...|.+++|+    +.+|++|+.||.|++||++++.. .... ..|...|.+++|+|++.+|++|+.||.|++||+
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            65588899999995    47899999999999999998776 3434 456668999999999999999999999999999


Q ss_pred             CCCCCCCcceee-eeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCCe--EEEEEc
Q 012679          297 SMASSNSVTQWL-HRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQV--CALLWN  368 (458)
Q Consensus       297 ~~~~~~~~~~~~-~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~v--~~~~~s  368 (458)
                      +++..      + ..+.. |...|.+++|+|++. ++++++   |+.|++||+++++++..+..    ...+  .+++|+
T Consensus       200 ~~~~~------~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T 3lrv_A          200 SSPDQ------ASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID  269 (343)
T ss_dssp             SCTTS------CCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC
T ss_pred             CCCCC------CccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEEC
Confidence            98876      4 56677 999999999999755 455553   44999999999887655432    1223  469999


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEecC
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP---DGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iW~~~  433 (458)
                      |++++++++++ .++.|+||++.........    .++..++|++   ++..+++++.||.+.++-..
T Consensus       270 ~~g~~l~~~s~-~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          270 DSGKNMIAYSN-ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             TTSSEEEEEET-TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCCEEEEecC-CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            99999998542 3889999999766554433    5677888998   88999999999999988544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=3.3e-30  Score=252.59  Aligned_cols=248  Identities=21%  Similarity=0.385  Sum_probs=209.6

Q ss_pred             EEEecCCCCC--EEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEE
Q 012679          176 LVTVDDENGP--VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~--V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vw  251 (458)
                      +....+|...  +.+++|++  ..+++++.||.|++||+.+++....+...|...|.+++|  ++.+|++|+.||.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence            4444555544  55677765  457888899999999999999888888768999999999  46899999999999999


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      |+.++.. +..+.+|...|.+++|  ++++|++|+.||.|++||++....     .+..+..|...|.+++|+|++ .++
T Consensus       162 d~~~~~~-~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~~l  232 (401)
T 4aez_A          162 DVESQTK-LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH-----QIGTLQGHSSEVCGLAWRSDG-LQL  232 (401)
T ss_dssp             ETTTCCE-EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECTTS-SEE
T ss_pred             ECcCCeE-EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc-----eeeEEcCCCCCeeEEEEcCCC-CEE
Confidence            9987764 6788899999999999  567999999999999999985433     267788899999999999965 556


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSH-GFTQNQLTLWKYPSMVKMAELSGHTSRVLFM  409 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l  409 (458)
                      ++++  .|+.|++||+++++++..+. +...|.+++|+|++..+++++ |..|+.|++||+.+++.+..+. |...|.++
T Consensus       233 ~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~  309 (401)
T 4aez_A          233 ASGG--NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL  309 (401)
T ss_dssp             EEEE--TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             EEEe--CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence            6665  89999999999999988875 567899999999887777654 4579999999999999998886 66789999


Q ss_pred             EEcCCCCEEEEEe--CCCcEEEEecCCCCc
Q 012679          410 AQSPDGCTVASAA--ADETLRFWNVFGAPQ  437 (458)
Q Consensus       410 ~~spdg~~l~s~s--~Dg~i~iW~~~~~~~  437 (458)
                      +|+|++.+|++++  .||.|++|++..+..
T Consensus       310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             EECSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             EECCCCCeEEEEeecCCCcEEEEecCCccc
Confidence            9999999999954  899999999987543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=4.9e-30  Score=247.29  Aligned_cols=279  Identities=11%  Similarity=0.100  Sum_probs=213.5

Q ss_pred             cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~  219 (458)
                      -.+++++|++ +.+++++.+..+++||+.+++.  ......  ..+..+++.++++.+ ++|+.|+.|+|||+.+++.+.
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~   95 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAH--IMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS   95 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEE--EEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCcce--eeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE
Confidence            3578899988 5688888888899999887654  333222  247888999988887 457788999999999999999


Q ss_pred             EecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEE--EECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS--GGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--g~~dg~i~iwd~~  297 (458)
                      .+.  +...|.+++++++.++++. ++.|++||+.+....+..+..   ....+++++  .++++  |+.||.|++||+.
T Consensus        96 ~~~--~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           96 RIK--VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             EEE--CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred             EEE--CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence            887  7779999999988777764 789999999877223333333   344456666  66766  5789999999998


Q ss_pred             CCCCCC---------ccee-eeeecccccceeEEEecCCCCcEEEEeCCCCCCe-EEEEECCCCCeeEEEe---CCCCeE
Q 012679          298 MASSNS---------VTQW-LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-IKFWNTHTGACLNSVD---TGSQVC  363 (458)
Q Consensus       298 ~~~~~~---------~~~~-~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-i~lwd~~~~~~~~~~~---~~~~v~  363 (458)
                      .+....         ...+ +..+.+|...|.+++|+|++ .++++++  .|++ |++||+++++++..+.   +...|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~  244 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVV  244 (355)
T ss_dssp             C------------------CCEEECCCSSCEEEEEECTTS-SEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEE
T ss_pred             CCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEE
Confidence            754100         0112 56788999999999999975 5666766  8998 9999999999999997   677899


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCcee--eEEEe---------------------CCCCcEEEEEEcCCCCEEEE
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVK--MAELS---------------------GHTSRVLFMAQSPDGCTVAS  420 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~--~~~~~---------------------~h~~~V~~l~~spdg~~l~s  420 (458)
                      +++|+|++++|+++  ..|+.|+|||+.....  ...+.                     .+......++|++||++|++
T Consensus       245 ~~~~s~~~~~l~s~--s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~  322 (355)
T 3vu4_A          245 DMKWSTDGSKLAVV--SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV  322 (355)
T ss_dssp             EEEECTTSCEEEEE--ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE
T ss_pred             EEEECCCCCEEEEE--ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE
Confidence            99999999999984  4899999999975431  11111                     11223467899999999999


Q ss_pred             EeCCCcEEEEecCCCCc
Q 012679          421 AAADETLRFWNVFGAPQ  437 (458)
Q Consensus       421 ~s~Dg~i~iW~~~~~~~  437 (458)
                      ++.||.+++|++.....
T Consensus       323 ~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          323 WPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             ETTTTEEEEEEEEEETT
T ss_pred             EeCCCeEEEEEEEcCCC
Confidence            99999999999976554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=2.9e-30  Score=252.40  Aligned_cols=277  Identities=14%  Similarity=0.130  Sum_probs=195.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCC--------eeeEEEecCCCCCEEEEEEc--------------------CCCCEEEEEec
Q 012679          152 SNVLAIALGSTVYLWDASDGT--------TSELVTVDDENGPVTSVNWA--------------------PDGRHIAIGLN  203 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~--------~~~~~~~~~h~~~V~~v~~s--------------------~~g~~la~g~~  203 (458)
                      .++++++.++.|.+|+.....        ...+..+ .+...+..+.|+                    +++.+||+|+.
T Consensus        31 ~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~  109 (393)
T 4gq1_A           31 SNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQ  109 (393)
T ss_dssp             TTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEET
T ss_pred             CCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeC
Confidence            578999999999999753211        1112222 234455555554                    34568999999


Q ss_pred             CCeEEEEeCCCceeeE-----EecCCCcccEEEEEeC----------CCeEEEEeCCCcEEEEEccCCCeeEEEEccccc
Q 012679          204 NCQVQLWDSTANRQLR-----TLRGGHRSRVGSLAWN----------NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ  268 (458)
Q Consensus       204 dg~v~iwd~~~~~~~~-----~~~~~~~~~v~~l~~~----------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~  268 (458)
                      |++|+|||+.+++...     .+. +|...|.+++|+          +++|++|+.|++|++||+++... ...+.+|..
T Consensus       110 d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~-~~~~~~~~~  187 (393)
T 4gq1_A          110 DNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP-ILAGYPLSS  187 (393)
T ss_dssp             TSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE-EEEEEECSS
T ss_pred             CCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce-eeeecCCCC
Confidence            9999999998886543     234 499999999994          57999999999999999987665 456667889


Q ss_pred             ceEeEEEcCCCC-EEEEEECCCcEEEEeCCCCCCCCcce-------------------eeeeecccccceeEEEecCCCC
Q 012679          269 EVCGLKWSASGQ-QLASGGNDNLLHIWDRSMASSNSVTQ-------------------WLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       269 ~v~~l~~spd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .|.+++|+|++. +|++|+.|++|++||++++.......                   ......+|...|.+++|++...
T Consensus       188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg  267 (393)
T 4gq1_A          188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG  267 (393)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred             CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence            999999999874 89999999999999998765421100                   0112346788899999974345


Q ss_pred             cEEEEeCCCCCCeEEEEECCCCCeeEEEeC-------------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          329 NLLATGGGGGDRCIKFWNTHTGACLNSVDT-------------------GSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      ..+++++  .|+.+++||+.++.....+..                   ........|++....+++++|..|+.|+|||
T Consensus       268 ~~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          268 SGILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             CEEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred             CEEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence            5666666  899999999988765544321                   1122233455544433444477899999999


Q ss_pred             CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ..+++.+..+.+|..+|.+++|+|||++||+++.|| +.+|++..
T Consensus       346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            999999988889999999999999999999998766 66676643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=2.2e-30  Score=241.17  Aligned_cols=277  Identities=16%  Similarity=0.156  Sum_probs=195.3

Q ss_pred             cceeeccC----CCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeE-EEEeC--CC
Q 012679          144 LNLLDWGS----SNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQV-QLWDS--TA  214 (458)
Q Consensus       144 ~~~~~~~~----~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v-~iwd~--~~  214 (458)
                      +.++-|..    ...+.++....|.+|+..++ +.+.+.++..|..+|..|.+.||-. ++.++-.+=.+ .++-+  ..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp  121 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS  121 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence            55666753    33788889999999999887 3466888999999999999998643 33333222111 11111  11


Q ss_pred             c----eeeEEecCCCcccEEEEEeCCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcC---CCCEEEEE
Q 012679          215 N----RQLRTLRGGHRSRVGSLAWNNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSA---SGQQLASG  285 (458)
Q Consensus       215 ~----~~~~~~~~~~~~~v~~l~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~sg  285 (458)
                      .    .... ..++|...|..+ -+++++.+++  .|+.|++|++......+..+.+|...+..++|++   ++.+|++|
T Consensus       122 d~~~~~~~l-~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          122 DDESEKQVL-LKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             ----CCEEE-EEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             CccccccEE-EeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence            1    1111 112255455444 1344444433  5999999999665556778889999999999999   78999999


Q ss_pred             ECCCcEEEEeCCCCCCCCcceeeeeecccc---cceeEEEecCCCCcEE-----------EEeCCCCCCeEEEEECCCCC
Q 012679          286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHT---SAVKAIAWCPFQSNLL-----------ATGGGGGDRCIKFWNTHTGA  351 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~ll-----------~s~~g~~d~~i~lwd~~~~~  351 (458)
                      +.|++|+|||+.+++.      +.++.+|.   ..+.+++|+|++..++           ++  |+.|++|++||..+++
T Consensus       200 S~D~TIkIWDl~TGk~------l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS--Gs~D~tIklWd~~tgk  271 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQL------LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL--RSPVFQLIVINPKTTL  271 (356)
T ss_dssp             ETTSEEEEEETTTCCE------EEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEETTTTE
T ss_pred             cCCCcEEEEECCCCcE------EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec--cCCCcEEEEEECCCCE
Confidence            9999999999999876      77776543   4677789999866553           34  4499999999999999


Q ss_pred             eeEEEe----CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE-EEEEcCCCCEEEEEeCCCc
Q 012679          352 CLNSVD----TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL-FMAQSPDGCTVASAAADET  426 (458)
Q Consensus       352 ~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~  426 (458)
                      ++..+.    .+.....+..+.++..+++  |..|++|+|||+.+++.+.++.+|...+. .++|+|||++|++|+.|++
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~sg~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDVKDHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEEETTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEEeeccCCCcceeEccccCCCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            877652    1211112222233555665  66899999999999999999999987655 5899999999999999999


Q ss_pred             EEEEec
Q 012679          427 LRFWNV  432 (458)
Q Consensus       427 i~iW~~  432 (458)
                      |+|||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=6e-30  Score=243.79  Aligned_cols=249  Identities=20%  Similarity=0.300  Sum_probs=203.6

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCe--eeEEEecCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCc
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTT--SELVTVDDENGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~--~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      -.+++++|++  ..+++++.||.|++||+.++..  .....+.+|...|++++|+|  ++++|++|+.||.|++||+.++
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~   91 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD   91 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence            3588899987  3488888899999999986532  34667789999999999999  6999999999999999999887


Q ss_pred             ---------eeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEE------------EEcccccce
Q 012679          216 ---------RQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVE------------TYRGHNQEV  270 (458)
Q Consensus       216 ---------~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~~h~~~v  270 (458)
                               +.+..+.. |...|.+++|+    +.+|++++.||.|++||+++......            ....|...+
T Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (351)
T 3f3f_A           92 QEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD  170 (351)
T ss_dssp             SCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred             cccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence                     55667766 99999999995    67999999999999999987653211            012678899


Q ss_pred             EeEEEcCC---CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC---cEEEEeCCCCCCeEEE
Q 012679          271 CGLKWSAS---GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS---NLLATGGGGGDRCIKF  344 (458)
Q Consensus       271 ~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~---~ll~s~~g~~d~~i~l  344 (458)
                      .+++|+|+   +.+|++++.|+.+.+|+......    ..+..+.+|...|.+++|+|++.   .++++++  .|+.|++
T Consensus       171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~i  244 (351)
T 3f3f_A          171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRI  244 (351)
T ss_dssp             EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE----EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEE
T ss_pred             eEEEeccCCCCCcEEEEecCCCcEEEEccCCCce----eeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEE
Confidence            99999997   99999999999998888766543    23567788999999999999863   6788877  9999999


Q ss_pred             EECCCC----------------------------------------------CeeEEEe-CCCCeEEEEEcCCCCeEEEE
Q 012679          345 WNTHTG----------------------------------------------ACLNSVD-TGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       345 wd~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~  377 (458)
                      ||++++                                              +.+..+. +...|++++|+|++++|++ 
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-  323 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS-  323 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE-
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE-
Confidence            999875                                              3444444 4567999999999999998 


Q ss_pred             ecCCCCcEEEEeCCCceeeEEE
Q 012679          378 HGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                       |..||.|+||++.+++.+..+
T Consensus       324 -~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          324 -AGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             -EETTSCEEEEEECTTSCEEEE
T ss_pred             -ecCCCcEEEEecCcCcchhhe
Confidence             448999999999977554433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.1e-29  Score=244.49  Aligned_cols=249  Identities=14%  Similarity=0.207  Sum_probs=203.4

Q ss_pred             EEEecCCCCCEEEEEEcCC---CCEEEEEecCCeEEEEeCCC-ceee-EEecCCCcccEEEEEeC--CCeEEEEeCCCcE
Q 012679          176 LVTVDDENGPVTSVNWAPD---GRHIAIGLNNCQVQLWDSTA-NRQL-RTLRGGHRSRVGSLAWN--NHILTTGGMDGLI  248 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~---g~~la~g~~dg~v~iwd~~~-~~~~-~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i  248 (458)
                      +..+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.. |...|.+++|+  +.+|++|+.||.|
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v  110 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTA  110 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCcE
Confidence            6678899999999999998   69999999999999999987 5555 55665 99999999994  6899999999999


Q ss_pred             EEEEccCCCeeEEEEcccccceEeEEE--cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          249 INNDVRVRDHIVETYRGHNQEVCGLKW--SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~--spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      ++||+++...  ..+.+|...|.+++|  +|++++|++++.||.|++||++....      +..+..+. .+.++.+.+ 
T Consensus       111 ~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~-~~~~~~~~~-  180 (368)
T 3mmy_A          111 KMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP------MMVLQLPE-RCYCADVIY-  180 (368)
T ss_dssp             EEEETTTTEE--EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC------SEEEECSS-CEEEEEEET-
T ss_pred             EEEEcCCCCc--eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE------EEEEecCC-CceEEEecC-
Confidence            9999987764  346679999999999  99999999999999999999998766      55665554 566666665 


Q ss_pred             CCcEEEEeCCCCCCeEEEEECCCCCeeEEEe---CCCCeEEEEEcCCCCe----EEEEecCCCCcEEEEeCCCc---eee
Q 012679          327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVD---TGSQVCALLWNKNERE----LLSSHGFTQNQLTLWKYPSM---VKM  396 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~---~~~~v~~~~~s~~~~~----l~~~~g~~d~~i~iwd~~~~---~~~  396 (458)
                       ..+++. +  .++.+++|++..........   ....+..+.+.++...    +++  |..++.|++|++...   ..+
T Consensus       181 -~~~~~~-~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          181 -PMAVVA-T--AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             -TEEEEE-E--GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHHHHS
T ss_pred             -CeeEEE-e--CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCccccc
Confidence             344443 3  78999999998876544332   2345666666665554    666  558999999999987   667


Q ss_pred             EEEeCCCC------------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          397 AELSGHTS------------RVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       397 ~~~~~h~~------------~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      ..+.+|..            .|++++|+|++++|++++.||.|++||+..+..+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            78888876            7999999999999999999999999999987665543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=5.9e-30  Score=246.70  Aligned_cols=249  Identities=12%  Similarity=0.119  Sum_probs=181.1

Q ss_pred             EEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeE-EEEe
Q 012679          165 LWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHIL-TTGG  243 (458)
Q Consensus       165 iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l-~sg~  243 (458)
                      ||++.+.+.  +.....|...|++++|+|||++||+|+.+| ++|||+.+++....... +...+..+.++++.+ ++|+
T Consensus         3 i~s~~~~~~--~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNP--IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCC--ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEEC
Confidence            455555444  556678999999999999999999998775 78999998877665543 333333344456665 6788


Q ss_pred             CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCC-CCCCcceeeeeecccccceeEEE
Q 012679          244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMA-SSNSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       244 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      .|+.|++||+.++.. +..+. |...|.++.|+++.  ++++ .|+.|++||+... ..      +..+..   ....++
T Consensus        79 ~d~~v~iWd~~~~~~-~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~------~~~~~~---~~~~~~  144 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQD-VSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR------ITDDIR---FGGVCE  144 (355)
T ss_dssp             STTEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB------SSCCEE---EEEEEE
T ss_pred             CccEEEEEECCCCcE-EEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee------eEEecc---CCceEE
Confidence            889999999987765 44554 67799999998764  4444 4789999999877 43      333333   334456


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCC----------------eeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCc-
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGA----------------CLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQ-  384 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~-  384 (458)
                      +++   .+++.++|+.||.|++||+.++.                ++..+. +...|.+++|+|++++|++  |..|++ 
T Consensus       145 ~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~  219 (355)
T 3vu4_A          145 FSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTI  219 (355)
T ss_dssp             EET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSE
T ss_pred             EEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCE
Confidence            666   44444324499999999999876                144443 4678999999999999998  558998 


Q ss_pred             EEEEeCCCceeeEEEe-C-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          385 LTLWKYPSMVKMAELS-G-HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~-~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      |+|||+.+++.+.++. + |...|.+++|+|+|++|++++.|++|++||+....
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999999999999998 6 99999999999999999999999999999997654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7e-31  Score=259.69  Aligned_cols=259  Identities=8%  Similarity=0.053  Sum_probs=203.2

Q ss_pred             ccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+.+++|+++  .+++++.|++|+  |...++     .+.+|...|.+|+|+|+|       .++.+.+|+   ++....
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~   79 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----DINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGL   79 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEE--EECCCS-----CCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCS
T ss_pred             cEEEEEECCCCCEEEEEcCCceee--cccccc-----eecCCCccEEEEEECCCC-------CcceEEEEe---CCCceE
Confidence            5778999983  466667889999  755554     337899999999999999       455555554   443333


Q ss_pred             ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc-----ceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          221 LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-----EVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       221 ~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      +...|...|.+++|  +|..|++++.||.|++||...   ++..+. |..     .|.+++|||||++||+|+.||+|+|
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            44337889999999  579999999999999999643   455666 665     5999999999999999999999999


Q ss_pred             EeCCCCCCCCc-ceeeeee----cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEe--CCCCeE
Q 012679          294 WDRSMASSNSV-TQWLHRL----EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVD--TGSQVC  363 (458)
Q Consensus       294 wd~~~~~~~~~-~~~~~~~----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~--~~~~v~  363 (458)
                      ||+..+..... .-.+.++    .+|...|.+++|+|++  +++ ++  .|+.|++||+.++..   ..++.  +...|.
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa-ss--~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA-AL--SNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE-EE--TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE-Ee--CCCeEEEEECCCCccccceeeecccccCcEE
Confidence            99988642110 0114554    6788899999999987  444 44  799999999998874   34553  346799


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEecC
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ--SPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +++|+  +..+++++   ++.|++||+.+++......+|.+.|..++|  +||+..|++++.||+ ++|.+.
T Consensus       231 svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          231 DLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            99999  67777752   589999999988885544489999999999  999999999999999 999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.6e-30  Score=251.62  Aligned_cols=269  Identities=18%  Similarity=0.290  Sum_probs=215.4

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEec------------CCCc
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLR------------GGHR  226 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~------------~~~~  226 (458)
                      ++.+++|+++.++.  ...+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+.            .+|.
T Consensus        22 ~~~~~v~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           22 ESTRRVLGLELNKD--RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHHTEEECTT--EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             cCcceeeccccCcc--eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            34567777776665  556678999999999999 99999999999999999999877655443            2499


Q ss_pred             ccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC---CCEEEEEECCCcEEEEeCCCCC
Q 012679          227 SRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS---GQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       227 ~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd---~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      ..|.+++|+   +.+|++++.||.|++||+.+... ...+ .+...+.++.|++.   +.++++|+.||.|++||++.+.
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            999999994   46899999999999999997664 3333 37788999999984   5599999999999999998876


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-eeEEE----------------eCCCCeE
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-CLNSV----------------DTGSQVC  363 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-~~~~~----------------~~~~~v~  363 (458)
                      .      +..+..|...|.+++|+|++..++++++  .|+.|++||++++. ++..+                .+...|.
T Consensus       178 ~------~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          178 C------SHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             C------CEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             e------eeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            6      6778899999999999999888888877  99999999998876 33333                2456799


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-----SRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-----~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +++|+|+++++++  +..|+.|++||+.+++....+.++.     ..+........+..+++++.|+.|++||+..+..+
T Consensus       250 ~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          250 GLCFTSDGLHLLT--VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI  327 (408)
T ss_dssp             EEEECTTSSEEEE--EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEE--ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence            9999999999998  4489999999999987765544332     22222233334556777888999999999887766


Q ss_pred             cccC
Q 012679          439 ISKS  442 (458)
Q Consensus       439 ~~~~  442 (458)
                      ....
T Consensus       328 ~~~~  331 (408)
T 4a11_B          328 TMLK  331 (408)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            5543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.5e-29  Score=247.95  Aligned_cols=242  Identities=16%  Similarity=0.301  Sum_probs=197.3

Q ss_pred             EEEEEEcCCCCEEE-EEecCCeEEEEeCCCce----eeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC
Q 012679          186 VTSVNWAPDGRHIA-IGLNNCQVQLWDSTANR----QLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       186 V~~v~~s~~g~~la-~g~~dg~v~iwd~~~~~----~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      ...++++|+...++ +|+.||.|+||++....    .+..+.+ |...|.+++|+   +.+|++|+.||.|++||+....
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34578888765444 47889999999986543    2334555 99999999994   5899999999999999998763


Q ss_pred             ------eeEEEEcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCC
Q 012679          258 ------HIVETYRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       258 ------~~~~~~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~  328 (458)
                            ..+..+.+|...|.+++|+|++ ++|++|+.||.|++||++.+..      +..+  ..|...|.+++|+|++.
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~  189 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA------VLTLGPDVHPDTIYSVDWSRDGA  189 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE------EEEECTTTCCSCEEEEEECTTSS
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc------cEEEecCCCCCceEEEEECCCCC
Confidence                  3467788999999999999998 6999999999999999998765      6677  78999999999999766


Q ss_pred             cEEEEeCCCCCCeEEEEECCCCCeeEEE-eCC-C-CeEEEEEcCCCCeEEEEec-CCCCcEEEEeCCCcee-eEEEe-CC
Q 012679          329 NLLATGGGGGDRCIKFWNTHTGACLNSV-DTG-S-QVCALLWNKNERELLSSHG-FTQNQLTLWKYPSMVK-MAELS-GH  402 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~-~-~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~~~~~-~~~~~-~h  402 (458)
                      .+++ ++  .|+.|++||+++++.+..+ ..+ . .+..+.|+|++.+++++.. ..++.|++||+.+++. +.... .|
T Consensus       190 ~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~  266 (402)
T 2aq5_A          190 LICT-SC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT  266 (402)
T ss_dssp             CEEE-EE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred             EEEE-Ee--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence            5554 44  8999999999999999887 333 3 3899999999998887310 5799999999988664 33333 57


Q ss_pred             CCcEEEEEEcCCCCEEEE-EeCCCcEEEEecCCCCc
Q 012679          403 TSRVLFMAQSPDGCTVAS-AAADETLRFWNVFGAPQ  437 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s-~s~Dg~i~iW~~~~~~~  437 (458)
                      ...|.+++|+|++++|++ |+.||.|++|++..+..
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            788999999999999975 45799999999988764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.4e-29  Score=250.52  Aligned_cols=244  Identities=20%  Similarity=0.381  Sum_probs=200.9

Q ss_pred             ccccceeeccCC---CeEEEEcCCEEEEEECCC--------CCeeeEEEecCCCCCEEEEEEcCCCC-EEEEEecCCeEE
Q 012679          141 DYYLNLLDWGSS---NVLAIALGSTVYLWDASD--------GTTSELVTVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQ  208 (458)
Q Consensus       141 d~~~~~~~~~~~---~~la~~~d~~v~iwd~~~--------~~~~~~~~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~  208 (458)
                      ...++++.|++.   .+++++.+|.|++||+.+        +....+..+.+|...|++++|+|++. +|++|+.||.|+
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence            346888999874   356666789999999976        23445778889999999999999988 999999999999


Q ss_pred             EEeCCCcee-------eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC--eeEEEEcccccceEeEEEc
Q 012679          209 LWDSTANRQ-------LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWS  276 (458)
Q Consensus       209 iwd~~~~~~-------~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~s  276 (458)
                      +||+.++..       ...+.. |...|.+++|+   +.+|++++.||.|++||++...  ..+..+..|...|++++|+
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  286 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN  286 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred             EEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence            999987432       344554 99999999994   5799999999999999999763  4456777999999999999


Q ss_pred             CCCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC------
Q 012679          277 ASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT------  349 (458)
Q Consensus       277 pd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~------  349 (458)
                      |++. +|++|+.||.|++||++....     ++..+..|...|.+++|+|++..++++++  .|+.|++||+..      
T Consensus       287 p~~~~~l~tg~~dg~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          287 PYSEFILATGSADKTVALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             SSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCCC-----CeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccC
Confidence            9987 689999999999999987433     26778889999999999999888888887  899999999987      


Q ss_pred             --------CCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          350 --------GACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       350 --------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                              .+.+..+.. ...|.+++|+|++..++++ +..||.|+||++...
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s-~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS-VSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE-EETTSEEEEEEECHH
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE-EECCCCEEEeEcccc
Confidence                    244555443 4579999999999944443 348999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.2e-29  Score=246.50  Aligned_cols=240  Identities=11%  Similarity=0.054  Sum_probs=197.6

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce---eeEEecC-------------------------------------
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR---QLRTLRG-------------------------------------  223 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~---~~~~~~~-------------------------------------  223 (458)
                      .++.+++|+++|++|+++ .++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999966655 67899999999988   5555442                                     


Q ss_pred             ----------------CCcccEEEEEeC--CCeE-EEEeCCCcEEEEEcc--CCCeeEEEEc--ccccceEeEEEcCCCC
Q 012679          224 ----------------GHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVR--VRDHIVETYR--GHNQEVCGLKWSASGQ  280 (458)
Q Consensus       224 ----------------~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~~--~h~~~v~~l~~spd~~  280 (458)
                                      +|...|.+++|+  +.+| ++|+.||.|++||+.  .+.. +..+.  .|...|++++|+|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence                            133469999994  5675 899999999999998  5553 45554  5678999999999999


Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC--CCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-
Q 012679          281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF--QSNLLATGGGGGDRCIKFWNTHTGACLNSVD-  357 (458)
Q Consensus       281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-  357 (458)
                      +|++|+.||.|++|++........  ....+.+|...|.+++|+|+  +..++++++  .|+.|++||+.+++++..+. 
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSD--RDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEE--TTSCEEEEEESCTTCEEEECC
T ss_pred             EEEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEc--CCCcEEEEECCCCceeeeeec
Confidence            999999999999999987664210  13466789999999999997  245666666  89999999999999887743 


Q ss_pred             -CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-------------------------CCcEEEEEE
Q 012679          358 -TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-------------------------TSRVLFMAQ  411 (458)
Q Consensus       358 -~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-------------------------~~~V~~l~~  411 (458)
                       +...|.+++|+ ++++|+++  ..|+.|++||+.+++.+..+..+                         ...|.+++|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSA--GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEE--ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCCCceEEEEEC-CCCEEEEE--eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence             56789999999 99999984  48999999999999988888632                         356999999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEec
Q 012679          412 SPDGCTVASAA-ADETLRFWNV  432 (458)
Q Consensus       412 spdg~~l~s~s-~Dg~i~iW~~  432 (458)
                      +|++++|++++ .|+.|++|++
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999 8999999999

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=243.17  Aligned_cols=235  Identities=7%  Similarity=-0.020  Sum_probs=187.0

Q ss_pred             EEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc---------CCCeeE
Q 012679          190 NWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR---------VRDHIV  260 (458)
Q Consensus       190 ~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~---------~~~~~~  260 (458)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.   ...|.++.|++. +++|+.|+.|++|+..         +...+.
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            345678899999999999999999999888776   356777778777 9999999999999765         333223


Q ss_pred             EEEcccccceEeEEEcC--CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCC
Q 012679          261 ETYRGHNQEVCGLKWSA--SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~sp--d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      ....+|...|.+++|+|  ++++|++|+.||.|++||++.+..      .... ..|...|.+++|+|+ ..++++|+  
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------~~~~~~~~~~~i~~~~~~pd-g~~lasg~--  189 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ------YIVHSAKSDVEYSSGVLHKD-SLLLALYS--  189 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE------EEEECCCSSCCCCEEEECTT-SCEEEEEC--
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE------EEEEecCCCCceEEEEECCC-CCEEEEEc--
Confidence            33347778999999999  999999999999999999987765      3333 345668999999996 55777766  


Q ss_pred             CCCeEEEEECCCCCee-EEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC---CCCcEE--EE
Q 012679          338 GDRCIKFWNTHTGACL-NSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG---HTSRVL--FM  409 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~---h~~~V~--~l  409 (458)
                      .|+.|++||+++++.+ ..+..  ...|.+++|+|++.+|++++   ++.|++||+++.+.+..+..   |...+.  ++
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence            9999999999999987 66654  67899999999999999853   44999999998877655443   444444  69


Q ss_pred             EEcCCCCEEEEEeC-CCcEEEEecCCCCcccc
Q 012679          410 AQSPDGCTVASAAA-DETLRFWNVFGAPQVIS  440 (458)
Q Consensus       410 ~~spdg~~l~s~s~-Dg~i~iW~~~~~~~~~~  440 (458)
                      +|+|+|++|++++. |+.|++|++........
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~  298 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT  298 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence            99999999999998 99999999976655443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=5.3e-29  Score=240.92  Aligned_cols=240  Identities=10%  Similarity=0.054  Sum_probs=188.1

Q ss_pred             ccceeeccCCCeEEEE-----------cCCEEEEEECCCCCe--eeEEE-----ecCCCCCEEEEEEcCCCCEEEEEe--
Q 012679          143 YLNLLDWGSSNVLAIA-----------LGSTVYLWDASDGTT--SELVT-----VDDENGPVTSVNWAPDGRHIAIGL--  202 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~-----------~d~~v~iwd~~~~~~--~~~~~-----~~~h~~~V~~v~~s~~g~~la~g~--  202 (458)
                      .+.+++++++.+++++           .|+.+++|++.+...  .....     ...+...+.+++|+|||++||+++  
T Consensus        75 ~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~  154 (365)
T 4h5i_A           75 SPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSK  154 (365)
T ss_dssp             CCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred             ceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence            4667788777666654           367899999775432  11111     123456799999999999987655  


Q ss_pred             cCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCC
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~  279 (458)
                      .|++|+|||+.+++.+..+.  |...|.+++|  ++.+|++++.+ .+.+|+..++.... ....+|...|.+++|+|++
T Consensus       155 ~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg  231 (365)
T 4h5i_A          155 VPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD  231 (365)
T ss_dssp             SSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred             CCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence            68999999999999998886  7788999999  47888888855 45666666565433 3456789999999999999


Q ss_pred             CEEEEEECCC----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679          280 QQLASGGNDN----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS  355 (458)
Q Consensus       280 ~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~  355 (458)
                      +++++++.|+    .+++||+......  ......+.+|...|.+++|+|++ .+||+|+  .|++|+|||+.+++++..
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~V~~~~~Spdg-~~lasgs--~D~~V~iwd~~~~~~~~~  306 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTS--VLRSKQVTNRFKGITSMDVDMKG-ELAVLAS--NDNSIALVKLKDLSMSKI  306 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEE--EEEEEEEESSCSCEEEEEECTTS-CEEEEEE--TTSCEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCcceeEEeecccccceec--ceeeeeecCCCCCeEeEEECCCC-CceEEEc--CCCEEEEEECCCCcEEEE
Confidence            9999999887    6888887655431  11245677899999999999975 5666766  899999999999999988


Q ss_pred             Ee--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          356 VD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       356 ~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      +.  +...|++++|+|++++|++  |..|++|+||+++.
T Consensus       307 ~~~gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          307 FKQAHSFAITEVTISPDSTYVAS--VSAANTIHIIKLPL  343 (365)
T ss_dssp             ETTSSSSCEEEEEECTTSCEEEE--EETTSEEEEEECCT
T ss_pred             ecCcccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcCC
Confidence            73  5678999999999999999  55899999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=266.12  Aligned_cols=244  Identities=21%  Similarity=0.359  Sum_probs=205.8

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEeCCCce-
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANR-  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~-  216 (458)
                      ..+++++|++  ..+++++.||.|+|||+.++....+..+.+|.+.|++++|+|+  +++|++|+.||.|++||+.+++ 
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~   89 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   89 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            3578888886  4588888999999999987666668888999999999999988  9999999999999999999887 


Q ss_pred             -eeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCe-eEEEEcccccceEeEEEcC-------------
Q 012679          217 -QLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDH-IVETYRGHNQEVCGLKWSA-------------  277 (458)
Q Consensus       217 -~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~sp-------------  277 (458)
                       .+..+.. |...|.+++|+    +..+++|+.||.|++||++.... ....+.+|...|.+++|+|             
T Consensus        90 ~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~  168 (753)
T 3jro_A           90 SQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK  168 (753)
T ss_dssp             EEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CG
T ss_pred             cccccccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCC
Confidence             6666666 99999999995    67999999999999999987632 3456678999999999999             


Q ss_pred             CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC--CcEEEEeCCCCCCeEEEEECCCCCe---
Q 012679          278 SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTGAC---  352 (458)
Q Consensus       278 d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~~~---  352 (458)
                      ++.+|++|+.||.|++||++.....  ......+.+|...|.+++|+|++  ..++++++  .||.|++||+.++..   
T Consensus       169 d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~  244 (753)
T 3jro_A          169 ESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWK  244 (753)
T ss_dssp             GGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCB
T ss_pred             CCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcce
Confidence            5899999999999999999876431  23356778999999999999985  66777776  899999999998742   


Q ss_pred             ---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          353 ---LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       353 ---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                         .....+...+.+++|+|++..+++  |..||.|++|++..
T Consensus       245 ~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          245 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENL  285 (753)
T ss_dssp             CCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCS
T ss_pred             eEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCC
Confidence               111234567999999999999988  55799999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=6.7e-28  Score=237.72  Aligned_cols=256  Identities=20%  Similarity=0.362  Sum_probs=201.5

Q ss_pred             ccccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-e
Q 012679          141 DYYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-Q  217 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~  217 (458)
                      ..++++++|++  ..+++++.|+.|+|||+.+++.  +..+.+|...|.+++|+  +.+|++|+.|+.+++||..... .
T Consensus       147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence            34789999987  4577888999999999999876  77888999999998874  6799999999999999988754 4


Q ss_pred             eEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCC-CEEEEE--ECCC
Q 012679          218 LRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASG-QQLASG--GNDN  289 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~-~~l~sg--~~dg  289 (458)
                      +..+.. |...+..+.|  ++.++++++.||.|++||...+..   .+.....|...|.+++|+|++ .+++++  +.|+
T Consensus       223 ~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          223 VATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             EEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             eEEecc-cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence            455665 9999999999  478999999999999999987642   345677899999999999965 455554  4799


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEc
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWN  368 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s  368 (458)
                      .|++||+.++..      ...+.. ...+.++.|+|++..+++++ |..|+.|++||+.+++++..+.. ...|.+++|+
T Consensus       302 ~I~iwd~~t~~~------~~~~~~-~~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s  373 (420)
T 4gga_A          302 HIRIWNVCSGAC------LSAVDA-HSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS  373 (420)
T ss_dssp             EEEEEETTTTEE------EEEEEC-SSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEEEeCCcccc------ceeecc-ccceeeeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            999999988765      555544 46788999999877766554 55899999999999999999874 5789999999


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      |++.+|++  |..|++|+|||+....+....+.+...+....+
T Consensus       374 pdg~~l~S--~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          374 PDGATVAS--AAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             TTSSCEEE--EETTTEEEEECCSCSSCC---------------
T ss_pred             CCCCEEEE--EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            99999998  448999999999887766666655554443333

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.2e-27  Score=236.33  Aligned_cols=268  Identities=9%  Similarity=0.047  Sum_probs=217.4

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec----CCCcccEEEEEe--C
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR----GGHRSRVGSLAW--N  235 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~----~~~~~~v~~l~~--~  235 (458)
                      .|+.||..++....+..+..+ ..+.+++|+|++.++++++.++.|++||+.+++.+..+.    .+|...|.+++|  +
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH  180 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred             EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence            566666655665556666654 456799999977788888888999999999998877432    138889999999  5


Q ss_pred             CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679          236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEEH  314 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h  314 (458)
                      +.++++++.|+.|++||+++... +..+..|...+.+++|+|+++++++++ .|+.|++||++++..      +..+.. 
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~------~~~~~~-  252 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE------IRKTDK-  252 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE------EEECCC-
T ss_pred             CEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE------EEEecC-
Confidence            78999999999999999987664 567778899999999999999885554 799999999987654      455544 


Q ss_pred             ccceeEEEecCCCCcEEEEeCCC-----CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          315 TSAVKAIAWCPFQSNLLATGGGG-----GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~g~-----~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      ...+.+++|+|++..+++++.+.     .|+.|++||+.+++.+..+.+...+..++|+|+++.++++ +..++.|.+||
T Consensus       253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d  331 (433)
T 3bws_A          253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYD  331 (433)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEE
Confidence            45689999999887777665221     4889999999999988888777789999999999888766 45799999999


Q ss_pred             CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC---------------CCcEEEEecCCCCcccc
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA---------------DETLRFWNVFGAPQVIS  440 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~---------------Dg~i~iW~~~~~~~~~~  440 (458)
                      +.+++.+..+. +...+.+++|+|+|++|++++.               ||.|++||+.+++....
T Consensus       332 ~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          332 LKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             TTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred             CCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence            99999888876 6778999999999999988877               57999999987665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.4e-26  Score=223.90  Aligned_cols=279  Identities=14%  Similarity=0.137  Sum_probs=217.3

Q ss_pred             cceeeccCC-C-eEEE-EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeE
Q 012679          144 LNLLDWGSS-N-VLAI-ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLR  219 (458)
Q Consensus       144 ~~~~~~~~~-~-~la~-~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~  219 (458)
                      +.++.|+++ . ++++ +.++.|++||+.+++.  +..+..+. .+.+++|+|+|++|++++ .++.|++||+.+++.+.
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            577889874 3 4344 4799999999999887  44454443 899999999999886554 66999999999999988


Q ss_pred             EecCCCcccEEEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE-EEEECCCcEEEEe
Q 012679          220 TLRGGHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWD  295 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd  295 (458)
                      .+.  +...+.+++|+  ++.| ++++.++.|++||+.+++. ...+..+ ..+.+++|+|++++| ++++.|+.|++||
T Consensus       111 ~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d  186 (391)
T 1l0q_A          111 TVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVID  186 (391)
T ss_dssp             EEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            887  44578999995  5555 7888899999999987654 4555544 456899999999988 5777899999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  375 (458)
                      +++...      ...+ .+...+.+++|+|++..+++++.+..++.|++||+.+++.+..+..+..+.+++|+|+++.++
T Consensus       187 ~~~~~~------~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  259 (391)
T 1l0q_A          187 TVTNSV------IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY  259 (391)
T ss_dssp             TTTTEE------EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             CCCCeE------EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEE
Confidence            987654      3444 356688999999988877776532258999999999999999998888899999999999987


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEeCCCCcEE---EEEEcCCC----------------------CEEEEEeCCCcEEEE
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL---FMAQSPDG----------------------CTVASAAADETLRFW  430 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~---~l~~spdg----------------------~~l~s~s~Dg~i~iW  430 (458)
                      ++ +..++.|++||+.+++.+..+..|..+..   .+.+.|++                      ..+...+.|..+++|
T Consensus       260 ~s-~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W  338 (391)
T 1l0q_A          260 VA-LSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKW  338 (391)
T ss_dssp             EE-ETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEE
T ss_pred             EE-cCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEE
Confidence            65 44789999999999999998887765421   12332211                      235566678999999


Q ss_pred             ecCCCCc
Q 012679          431 NVFGAPQ  437 (458)
Q Consensus       431 ~~~~~~~  437 (458)
                      ++..+..
T Consensus       339 ~~~~g~~  345 (391)
T 1l0q_A          339 DFGDGSS  345 (391)
T ss_dssp             ECSSSCE
T ss_pred             ECCCCcc
Confidence            9977654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.9e-28  Score=240.17  Aligned_cols=254  Identities=12%  Similarity=0.080  Sum_probs=193.8

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      ..+..+.++|..        .+..|++.+++...+..+ .|...|.+++|||+|++||+++.||.|+|||.++  .+..+
T Consensus        53 ~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l  121 (588)
T 2j04_A           53 KNLFHVKEFPLE--------FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL  121 (588)
T ss_dssp             GGTEEEEEECCC--------CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC
T ss_pred             ccEEEEEECCCC--------CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec
Confidence            356666666644        455555554443223443 4478999999999999999999999999999554  55555


Q ss_pred             cCCCcc-----cEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe------eEEEE----cccccceEeEEEcCCCCEEEE
Q 012679          222 RGGHRS-----RVGSLAW--NNHILTTGGMDGLIINNDVRVRDH------IVETY----RGHNQEVCGLKWSASGQQLAS  284 (458)
Q Consensus       222 ~~~~~~-----~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~------~~~~~----~~h~~~v~~l~~spd~~~l~s  284 (458)
                      .  |..     .|.+++|  +|.+|++|+.||+|++||+.++..      .+..+    .+|...|.+++|+|||  +++
T Consensus       122 ~--~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa  197 (588)
T 2j04_A          122 D--SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA  197 (588)
T ss_dssp             C--CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred             c--CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence            5  443     5999999  589999999999999999987642      34565    6788899999999999  889


Q ss_pred             EECCCcEEEEeCCCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe-eEEEeCCCCe
Q 012679          285 GGNDNLLHIWDRSMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-LNSVDTGSQV  362 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~-~~~~~~~~~v  362 (458)
                      ++.|+.|++||+......   ....++ .+|...|.+++|+  + ..+|+++   ++.|++||+.+++. .....+...+
T Consensus       198 ss~D~tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V  268 (588)
T 2j04_A          198 ALSNNSVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV--D-YKVVLTC---PGYVHKIDLKNYSISSLKTGSLENF  268 (588)
T ss_dssp             EETTCCEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE--T-TEEEEEC---SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred             EeCCCeEEEEECCCCccc---cceeeecccccCcEEEEEEE--C-CEEEEEe---CCeEEEEECCCCeEEEEEcCCCceE
Confidence            999999999999876631   013445 4788999999999  3 6677664   68999999999887 4444677889


Q ss_pred             EEEEE--cCCCCeEEEEecCCCCcEEEEeCCCce-----------------------eeEEEeCCCCcEEEEEEcCCCCE
Q 012679          363 CALLW--NKNERELLSSHGFTQNQLTLWKYPSMV-----------------------KMAELSGHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       363 ~~~~~--s~~~~~l~~~~g~~d~~i~iwd~~~~~-----------------------~~~~~~~h~~~V~~l~~spdg~~  417 (458)
                      ..+.|  +|++..+++  ++.+|+ ++|......                       .+..++ +...|.+++|||||+.
T Consensus       269 ~~va~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~  344 (588)
T 2j04_A          269 HIIPLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYS  344 (588)
T ss_dssp             CEEEETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSE
T ss_pred             EEEEeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCE
Confidence            99999  999988888  558899 999874211                       111222 2445999999999999


Q ss_pred             EEEEeC
Q 012679          418 VASAAA  423 (458)
Q Consensus       418 l~s~s~  423 (458)
                      +|+++.
T Consensus       345 lA~~~~  350 (588)
T 2j04_A          345 IAIVYD  350 (588)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            998874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=3.9e-28  Score=237.31  Aligned_cols=234  Identities=14%  Similarity=0.137  Sum_probs=172.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeee---EEEecCCCCCEEEEEEcC--------CCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSE---LVTVDDENGPVTSVNWAP--------DGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~---~~~~~~h~~~V~~v~~s~--------~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      ..+++++.|++|+|||..+++...   +..+.+|.+.|++|+|+|        ||++||+|+.|++|+|||+.++..+..
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            457888899999999999886533   334679999999999998        889999999999999999998888777


Q ss_pred             ecCCCcccEEEEEeCC---CeEEEEeCCCcEEEEEccCCCeeE------------------------EEEcccccceEeE
Q 012679          221 LRGGHRSRVGSLAWNN---HILTTGGMDGLIINNDVRVRDHIV------------------------ETYRGHNQEVCGL  273 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~vwd~~~~~~~~------------------------~~~~~h~~~v~~l  273 (458)
                      +.. |...|.+++|++   .+|++|+.||+|++||++++....                        ....+|...|.++
T Consensus       182 ~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v  260 (393)
T 4gq1_A          182 GYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV  260 (393)
T ss_dssp             EEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred             ecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence            776 889999999953   589999999999999998765321                        1124677889999


Q ss_pred             EEc-CCCCEEEEEECCCcEEEEeCCCCCCCCcc-------------eeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          274 KWS-ASGQQLASGGNDNLLHIWDRSMASSNSVT-------------QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       274 ~~s-pd~~~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      .|+ +|++.|++++.|+.+++||+.........             ........+...+..+.+.+.+..++++|+  .|
T Consensus       261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~D  338 (393)
T 4gq1_A          261 RWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QH  338 (393)
T ss_dssp             EEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TT
T ss_pred             eeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CC
Confidence            987 79999999999999999998876541110             001111122222223333333444566665  89


Q ss_pred             CeEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          340 RCIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      +.|++||+.+++++... .+...|.+++|+|+|++|++++   ++.+.+|.+.
T Consensus       339 g~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as---~~Gv~lvrL~  388 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT---EGSVLLTRLM  388 (393)
T ss_dssp             TEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE---SSEEEEEEEG
T ss_pred             CEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEEe
Confidence            99999999999877654 5677899999999999999854   4557766643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=5.7e-26  Score=214.29  Aligned_cols=244  Identities=22%  Similarity=0.384  Sum_probs=200.1

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      .+.+|+||+++ +||+| .|++|+|||+.+++.++.+.. +|...|.+++|  ++++|++|+.||.|++||+++++. +.
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~  103 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LR  103 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EE
Confidence            45789999886 77776 489999999999998887753 37888999999  478999999999999999998764 67


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC  341 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~  341 (458)
                      .+.+|...+.++.+  ++..+++|+.++.+++|+......     .+..+.+|...+..+++++++. ++++++  .|+.
T Consensus       104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~  173 (318)
T 4ggc_A          104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNL  173 (318)
T ss_dssp             EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC-----EEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred             EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCce-----eEEEEcCccCceEEEEEcCCCC-EEEEEe--cCcc
Confidence            88899998877655  578999999999999999877654     2667789999999999999765 555555  8999


Q ss_pred             EEEEECCCCCee-----EEEeCCCCeEEEEEcCCCCeEE-EEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679          342 IKFWNTHTGACL-----NSVDTGSQVCALLWNKNERELL-SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       342 i~lwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~-~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      |++||+++++..     ........+..+.+++.+..++ .+.|..++.|++||........... +...+..+.|+|++
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~  252 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY  252 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTT
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccc
Confidence            999999987632     2223456799999999876654 4557789999999999888776654 66789999999999


Q ss_pred             CEEEEEe--CCCcEEEEecCCCCcccccC
Q 012679          416 CTVASAA--ADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       416 ~~l~s~s--~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      ..+++++  .|+.|++||+.++..+....
T Consensus       253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~  281 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKYPTMAKVAELK  281 (318)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred             cceEEEEEcCCCEEEEEECCCCcEEEEEc
Confidence            9888765  79999999999887766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.3e-26  Score=228.12  Aligned_cols=279  Identities=14%  Similarity=0.090  Sum_probs=215.5

Q ss_pred             ccceeeccCC--C-eEEEE----cCC----EEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcC--------------CC
Q 012679          143 YLNLLDWGSS--N-VLAIA----LGS----TVYLWDA--SDGTTSELVTVDDENGPVTSVNWAP--------------DG  195 (458)
Q Consensus       143 ~~~~~~~~~~--~-~la~~----~d~----~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~--------------~g  195 (458)
                      .++..+|...  . +++++    .+|    .|+|||+  .+++......+.+|...+..+++++              .+
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            3556677652  3 44554    357    8999999  8888643356778888888877765              26


Q ss_pred             CEEEEEecC------CeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCC---cEEEEEccCCCeeEEEEc
Q 012679          196 RHIAIGLNN------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG---LIINNDVRVRDHIVETYR  264 (458)
Q Consensus       196 ~~la~g~~d------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~  264 (458)
                      ..++.++.+      +.|++||+.. ...+.+.. |...+.+++|+  ++.|++++.++   .|++||+.++..  ..+.
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~  219 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVA  219 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEE
T ss_pred             CEEEEEEecCCCCccceEEEEcCCC-CCCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEee
Confidence            677777664      7999999975 44566665 88999999994  78899998875   999999998764  3566


Q ss_pred             ccccceEeEEEcCCCCEEE-EEECCCc--EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-
Q 012679          265 GHNQEVCGLKWSASGQQLA-SGGNDNL--LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-  340 (458)
Q Consensus       265 ~h~~~v~~l~~spd~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-  340 (458)
                      .|...+.+++|+|||++|+ +++.|+.  |++||+.++.       ...+..|...+.+++|+|++..+++++.  .++ 
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~  290 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGR  290 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEEECTTSSEEEEEEC--TTSS
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceEECCCCCEEEEEEC--CCCC
Confidence            7888999999999999888 6666654  9999988754       3566778889999999999887877764  344 


Q ss_pred             -eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEE
Q 012679          341 -CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV  418 (458)
Q Consensus       341 -~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l  418 (458)
                       .|.+||+.+++..........+..++|+|++++|+++... .+..|.+||+.+++.. .+..|. .+.+++|+|||++|
T Consensus       291 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l  368 (415)
T 2hqs_A          291 PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMV  368 (415)
T ss_dssp             CEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEE
T ss_pred             cEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEE
Confidence             7888899988765444455678899999999999886532 1358999999988764 465564 89999999999999


Q ss_pred             EEEeCCC---cEEEEecCCCC
Q 012679          419 ASAAADE---TLRFWNVFGAP  436 (458)
Q Consensus       419 ~s~s~Dg---~i~iW~~~~~~  436 (458)
                      ++++.|+   .|++||+.+..
T Consensus       369 ~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEEETTEEEEEEEETTSCC
T ss_pred             EEEEcCCCccEEEEEECCCCc
Confidence            9998887   79999987543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.1e-24  Score=221.27  Aligned_cols=273  Identities=10%  Similarity=0.131  Sum_probs=214.8

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC--CCceeeEEecCCCcccEE
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS--TANRQLRTLRGGHRSRVG  230 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~--~~~~~~~~~~~~~~~~v~  230 (458)
                      .+++...+++|.+||..++++  +.++..+.. +.+++|+|||++|++++.|+.|.+||+  .+++.+.++.  +...+.
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~--~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~  225 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKI--VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEAR  225 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCE--EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEE
T ss_pred             EEEEEcCCCeEEEEECCCceE--EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcc
Confidence            355555689999999999987  555553233 899999999999999999999999999  8899888887  445678


Q ss_pred             EEEeC------CCeEEEEe-CCCcEEEEEccCCCeeEEEEcc----------ccc-ceEeEEEcCCCCE-EEEEECCCcE
Q 012679          231 SLAWN------NHILTTGG-MDGLIINNDVRVRDHIVETYRG----------HNQ-EVCGLKWSASGQQ-LASGGNDNLL  291 (458)
Q Consensus       231 ~l~~~------~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~----------h~~-~v~~l~~spd~~~-l~sg~~dg~i  291 (458)
                      .++|+      +++|++++ .+++|.+||..+.+. +..+..          |.. .+.++.++|++.. +++...++.|
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            88884      57888887 489999999987764 444433          223 6889999997765 4666778999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-----CCeEEEE
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-----SQVCALL  366 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-----~~v~~~~  366 (458)
                      .+||+.......    +..+ .+...+..++|+|++.++++++.  .+++|.+||+.+++++..+..+     .....+ 
T Consensus       305 ~vvd~~~~~~l~----~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-  376 (543)
T 1nir_A          305 LLVNYKDIDNLT----VTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-  376 (543)
T ss_dssp             EEEECTTSSSCE----EEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred             EEEEecCCCcce----eEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence            999998765411    1233 35667889999999998888876  7899999999999999888742     222333 


Q ss_pred             EcCCCCeEEEEecCCCCcEEEEeCCC-------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-------CCCcEEEEec
Q 012679          367 WNKNERELLSSHGFTQNQLTLWKYPS-------MVKMAELSGHTSRVLFMAQSPDGCTVASAA-------ADETLRFWNV  432 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~~i~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-------~Dg~i~iW~~  432 (458)
                      ++|++..++++....+++|.+||+.+       ++.+.++.+|...+..++++|+|++|++++       .+++|.+||+
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            57875566555444689999999998       899999999998899999999999999887       2789999999


Q ss_pred             CCCCccc
Q 012679          433 FGAPQVI  439 (458)
Q Consensus       433 ~~~~~~~  439 (458)
                      .+.+...
T Consensus       457 ~~~~~~~  463 (543)
T 1nir_A          457 KNLDAKY  463 (543)
T ss_dssp             TCTTSCC
T ss_pred             CCCCCCe
Confidence            9887653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.6e-24  Score=206.04  Aligned_cols=273  Identities=9%  Similarity=0.037  Sum_probs=202.9

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCcee-eEEecCCCcccEEE
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQ-LRTLRGGHRSRVGS  231 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~-~~~~~~~~~~~v~~  231 (458)
                      +++.+.++.|++||..+++.....  ..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+.. +.....+
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~   88 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQI--TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-GQSSMAD   88 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEE--ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-CSSCCCC
T ss_pred             EEEecCCCeEEEEeCcccceeeeE--EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-CCCCccc
Confidence            445556899999999999874443  3445566 9999999997777665 88999999999987 666664 5555554


Q ss_pred             EEe--CCCeEEEEeCCC---cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCc-EEEEeCCCCCCCCc
Q 012679          232 LAW--NNHILTTGGMDG---LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNL-LHIWDRSMASSNSV  304 (458)
Q Consensus       232 l~~--~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~-i~iwd~~~~~~~~~  304 (458)
                      ++|  ++.+|+++..++   .|.+||+.++.. +..+.. .....+++|+|||++|+ ++..++. |.+|++........
T Consensus        89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A           89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             EEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             eEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence            788  467888555553   899999987654 444443 34568999999998555 4456688 99999885443111


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                      ..  .........+..++|+|++..+++++.  .++.|++||+.+++.   +..+..+..+..++|+|++++++++.. .
T Consensus       167 ~~--~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~  241 (331)
T 3u4y_A          167 TG--QEFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE-S  241 (331)
T ss_dssp             EE--EEEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS-S
T ss_pred             cC--CccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc-C
Confidence            11  111233456789999999888888876  789999999999998   888888888999999999998887643 5


Q ss_pred             CCcEEEEeCCCcee--eEEEeCC----CCc---EEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCc
Q 012679          382 QNQLTLWKYPSMVK--MAELSGH----TSR---VLFMAQSPDGCTVASAAA-DETLRFWNVFGAPQ  437 (458)
Q Consensus       382 d~~i~iwd~~~~~~--~~~~~~h----~~~---V~~l~~spdg~~l~s~s~-Dg~i~iW~~~~~~~  437 (458)
                      ++.|.+||..+++.  +..+..+    ...   +..++|+|||++|++++. ++.|.+||+.....
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            77899999998877  4444333    222   355899999998866655 56999999976543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.6e-24  Score=211.59  Aligned_cols=249  Identities=14%  Similarity=0.098  Sum_probs=195.7

Q ss_pred             CCCeEEEEcC------CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC---eEEEEeCCCceeeEEe
Q 012679          151 SSNVLAIALG------STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC---QVQLWDSTANRQLRTL  221 (458)
Q Consensus       151 ~~~~la~~~d------~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg---~v~iwd~~~~~~~~~~  221 (458)
                      ..+++.++.+      +.|++||+..+..   ..+.+|...|.+++|+|||++|++++.++   .|++||+.+++... +
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l  218 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V  218 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence            4567777765      7999999986553   44556788999999999999999999875   99999999988754 4


Q ss_pred             cCCCcccEEEEEeC--CCeEE-EEeCCCc--EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CC--cEEE
Q 012679          222 RGGHRSRVGSLAWN--NHILT-TGGMDGL--IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DN--LLHI  293 (458)
Q Consensus       222 ~~~~~~~v~~l~~~--~~~l~-sg~~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg--~i~i  293 (458)
                      .. |...+.+++|+  ++.|+ +++.++.  |++||+.++..  ..+..|...+.+++|+|||++|++++. ++  .|.+
T Consensus       219 ~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          219 AS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             EC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             ec-CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            44 78899999995  66666 6766665  99999987653  567788889999999999999998886 44  6777


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCe
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE  373 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~  373 (458)
                      ||+..+..       ..+..+...+.+++|+|++..+++++....+..|++||+.+++... +.....+.+++|+|+++.
T Consensus       296 ~d~~~~~~-------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~  367 (415)
T 2hqs_A          296 VNINGGAP-------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTM  367 (415)
T ss_dssp             EETTSSCC-------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSE
T ss_pred             EECCCCCE-------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCE
Confidence            88876543       3445567788999999998877776641124689999999988754 433448999999999999


Q ss_pred             EEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679          374 LLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       374 l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  416 (458)
                      |+++.. .++  .|.+||+. +.....+.+|.+.|.+++|+|.-.
T Consensus       368 l~~~s~-~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          368 VIYSSS-QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEE-ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EEEEEc-CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            988642 233  79999986 556778889999999999999643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=3.5e-25  Score=205.97  Aligned_cols=256  Identities=11%  Similarity=0.092  Sum_probs=192.5

Q ss_pred             EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-ceeeEEecCCCcccEEEEEe--
Q 012679          158 ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-NRQLRTLRGGHRSRVGSLAW--  234 (458)
Q Consensus       158 ~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~v~~l~~--  234 (458)
                      +.++.|++||+.+++...   +..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++........+...+.+++|  
T Consensus        19 ~~~~~i~~~d~~~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRV---VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCEEEEEEETTTTEEEE---EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CcceeEEEEeCCCCceee---eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            457899999999887643   334678899999999999999986 78999999999 77766665523477888999  


Q ss_pred             CCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCcEEEEeCCCCCCCCcceeeeee
Q 012679          235 NNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       235 ~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                      ++..|++++  .++.+.+|.+.........+..+. .+..++|+|++++|+ +++.|+.+.||++......     ...+
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-----~~~~  168 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-----ETRL  168 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-----EEEC
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc-----ceEc
Confidence            478888888  334555555543222234444433 488999999999887 7788999999996543221     4556


Q ss_pred             cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecC---------
Q 012679          312 EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVD-TGSQVCALLWNKNERELLSSHGF---------  380 (458)
Q Consensus       312 ~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~---------  380 (458)
                      ..+...+.+++|+|++..+++++.  .++.+++|++. .+..+..+. +...+..+.|+|++++|+++...         
T Consensus       169 ~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             CCSSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             ccCCCccccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            677888999999999888887765  68889999876 444455443 34568899999999999886532         


Q ss_pred             CCCcEEEEeCCCcee--eEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          381 TQNQLTLWKYPSMVK--MAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      .++.|.+||+.+++.  +..+.+|...+.+++|+|+|++|++++.|.
T Consensus       247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            125799999988755  455558888999999999999998887764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=7.2e-24  Score=201.90  Aligned_cols=269  Identities=12%  Similarity=0.179  Sum_probs=194.6

Q ss_pred             eEEE-EcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-CeEEEEeCC--Cce--eeEEecCCCc
Q 012679          154 VLAI-ALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-CQVQLWDST--ANR--QLRTLRGGHR  226 (458)
Q Consensus       154 ~la~-~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g~v~iwd~~--~~~--~~~~~~~~~~  226 (458)
                      ++++ +.++.|++|++. +++...+..+ .+...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+.. + 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-
Confidence            3444 568999999985 4554444444 356789999999999999998886 899999987  444  3444543 2 


Q ss_pred             ccEEEEEeC--CCeEEEEe-CCCcEEEEEccCCC--eeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCC-C
Q 012679          227 SRVGSLAWN--NHILTTGG-MDGLIINNDVRVRD--HIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSM-A  299 (458)
Q Consensus       227 ~~v~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~-~  299 (458)
                      ..+..++|+  +..|++++ .++.|.+||+..+.  .....+.. ...+.+++|+|++++|++++ .++.|.+||+.. +
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            377888884  66666555 58899999995221  22333333 34588999999999888887 899999999986 3


Q ss_pred             CCCCcceeee--eecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--CCe--eEEEe---C----CCCeEEE
Q 012679          300 SSNSVTQWLH--RLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT--GAC--LNSVD---T----GSQVCAL  365 (458)
Q Consensus       300 ~~~~~~~~~~--~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~--~~~--~~~~~---~----~~~v~~~  365 (458)
                      ..    ....  .+.. ....+..++|+|++..+++++.  .++.|.+||+..  ++.  ...+.   .    ...+..+
T Consensus       163 ~~----~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          163 HL----VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             CE----EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             ce----eeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            22    1111  2222 3457888999999888888775  789999999953  443  22232   1    1346689


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCC----CceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYP----SMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFG  434 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~----~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~  434 (458)
                      +|+|++++++++. ..++.|.+|++.    ..+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|++..
T Consensus       237 ~~s~dg~~l~v~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          237 HITPDGRHLYACD-RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EECTTSSEEEEEE-TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EECCCCCEEEEEe-cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            9999999988653 468999999998    3456666665555 88999999999888887 589999997653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=9.9e-24  Score=214.10  Aligned_cols=288  Identities=13%  Similarity=0.094  Sum_probs=221.6

Q ss_pred             cceeeccC--CCeEEEEcCCEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcC----CCCEEEEEec-CCeEEEEeCCC
Q 012679          144 LNLLDWGS--SNVLAIALGSTVYLWDA--SDGTTSELVTVDDENGPVTSVNWAP----DGRHIAIGLN-NCQVQLWDSTA  214 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~d~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~----~g~~la~g~~-dg~v~iwd~~~  214 (458)
                      +..+.+++  ..+++++.|+.|++||+  .+++.  +.++.. ...+..++|+|    ||++|++++. +++|.|||..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~--~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE--EEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            44566766  45888888999999999  67665  555653 55689999999    9999999884 89999999999


Q ss_pred             ceeeEEecCC---------C-cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679          215 NRQLRTLRGG---------H-RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       215 ~~~~~~~~~~---------~-~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~  281 (458)
                      ++.+..+...         | ...+.++.++   +.++++...++.|.+||+.+...+......+...+.++.|+|+|++
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence            9998887641         2 2378888884   3567788889999999998765433222345677889999999998


Q ss_pred             EEEEE-CCCcEEEEeCCCCCCCCcceeeeeecc----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-------
Q 012679          282 LASGG-NDNLLHIWDRSMASSNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-------  349 (458)
Q Consensus       282 l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-------  349 (458)
                      |++++ .+++|.+||..+++.      +..+..    |.+....+ ++|++..+++++. ..|++|.+||+.+       
T Consensus       338 l~va~~~~~~v~v~D~~tg~l------~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~  409 (543)
T 1nir_A          338 FMTAANNSNKVAVIDSKDRRL------SALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYA  409 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTTEE------EEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTB
T ss_pred             EEEEecCCCeEEEEECCCCeE------EEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhc
Confidence            77655 589999999998765      444442    54433333 4787677887763 2479999999998       


Q ss_pred             CCeeEEEeCC-CCeEEEEEcCCCCeEEEEe--cC---CCCcEEEEeCCCceee-EEE--------eCCCCcEEEEEEcCC
Q 012679          350 GACLNSVDTG-SQVCALLWNKNERELLSSH--GF---TQNQLTLWKYPSMVKM-AEL--------SGHTSRVLFMAQSPD  414 (458)
Q Consensus       350 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~--g~---~d~~i~iwd~~~~~~~-~~~--------~~h~~~V~~l~~spd  414 (458)
                      +++++++..+ ..+..+.++|++++|++..  +.   .++.|.|||+.+++.. ..+        ..+..++..++|+|+
T Consensus       410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  489 (543)
T 1nir_A          410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  489 (543)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS
T ss_pred             CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC
Confidence            8999999875 5678899999999999953  11   1679999999998877 443        356788999999999


Q ss_pred             CCEEEEEe-----CCCcEEEEecCCCCcccccC
Q 012679          415 GCTVASAA-----ADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       415 g~~l~s~s-----~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      |+.|+.+.     .|+.|.|||..+.+......
T Consensus       490 g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          490 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            99988663     47999999999887765544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=2.2e-22  Score=192.65  Aligned_cols=267  Identities=15%  Similarity=0.124  Sum_probs=206.1

Q ss_pred             cceeeccCC--CeEEEEc-------CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 012679          144 LNLLDWGSS--NVLAIAL-------GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDST  213 (458)
Q Consensus       144 ~~~~~~~~~--~~la~~~-------d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~  213 (458)
                      ...+.|+++  .+++++.       ++.|++||..+++.......   ...+..++|+|+|++++++ ..++.|.+||..
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            345666663  3444442       56899999999987444433   3347889999999966655 457899999999


Q ss_pred             CceeeEEecCCCcc--------cEEEEEe--CCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679          214 ANRQLRTLRGGHRS--------RVGSLAW--NNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       214 ~~~~~~~~~~~~~~--------~v~~l~~--~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~  281 (458)
                      +++.+..+..++..        .+.+++|  +++.+++++  .++.|.+||+.+... +..+..+...+.+++|+|++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCEEETTTTE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEEECCCCCE
Confidence            99988888752222        2678888  567666665  478999999987654 5556556666889999999999


Q ss_pred             EEEEECCCcEEEEeCCCCCCCCcceeeeeecc----cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe
Q 012679          282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEE----HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD  357 (458)
Q Consensus       282 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~  357 (458)
                      |++++.++.|.+||..++..      +..+..    +...+..++|+|++..++++..  .++.|.+||..+++.+..+.
T Consensus       199 l~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKI------LSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEE------EEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCeE------EEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEE
Confidence            99999999999999987754      333332    4556788999999888888765  67999999999999998887


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      .+.. ..+.|+|+++.++++. ..++.|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..++
T Consensus       271 ~~~~-~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          271 APES-LAVLFNPARNEAYVTH-RQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             CSSC-CCEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             cCCC-ceEEECCCCCEEEEEE-CCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence            7654 5699999999877763 46899999999999998888754 4678999999999777766553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.3e-23  Score=222.04  Aligned_cols=280  Identities=14%  Similarity=0.099  Sum_probs=207.3

Q ss_pred             ccceeeccCC--CeEEEEc-CC-----EEEEEECCCCCeeeEEEecCCC----------------------CCEEEEEEc
Q 012679          143 YLNLLDWGSS--NVLAIAL-GS-----TVYLWDASDGTTSELVTVDDEN----------------------GPVTSVNWA  192 (458)
Q Consensus       143 ~~~~~~~~~~--~~la~~~-d~-----~v~iwd~~~~~~~~~~~~~~h~----------------------~~V~~v~~s  192 (458)
                      .+..+.|+++  .+++++. ++     .|++||+.+++...+.....+.                      ..|.+++|+
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            4667888873  4666776 77     9999999999875555443332                      237899999


Q ss_pred             CCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc
Q 012679          193 PDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ  268 (458)
Q Consensus       193 ~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~  268 (458)
                      |||++|++++. +.|.+||+.++.  .+..+.. |...+.+++|  +++.|++++ ++.|++||+.++.. ......+..
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~~~~~~~~  193 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQLTADGST  193 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EECCCCCCS
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EEeccCCcc
Confidence            99999999987 899999999883  3444554 7788999999  578888887 46999999987653 232223332


Q ss_pred             c----------------eEeEEEcCCCCEEEEEECCC---------------------------------cEEEEeCCC-
Q 012679          269 E----------------VCGLKWSASGQQLASGGNDN---------------------------------LLHIWDRSM-  298 (458)
Q Consensus       269 ~----------------v~~l~~spd~~~l~sg~~dg---------------------------------~i~iwd~~~-  298 (458)
                      .                +.++.|+|||++|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                47899999999999998766                                 788999887 


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC--CCCCCeEEEEECCCCCeeEEEeCCC-----CeEEEEEcCCC
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG--GGGDRCIKFWNTHTGACLNSVDTGS-----QVCALLWNKNE  371 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~--g~~d~~i~lwd~~~~~~~~~~~~~~-----~v~~~~~s~~~  371 (458)
                      +...    .+.....|...+..++| |++..+++++.  +..+..|++||+.++++...+....     .+..+.|+|++
T Consensus       274 ~~~~----~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          274 AQTQ----WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             CCCE----EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             CceE----EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence            6541    01111247788999999 99888876642  2346789999999998877665432     45689999999


Q ss_pred             CeEEEEecCCCCcEEEEeCC-CceeeEEEeCCCCcEEEE-EEcCCCCEEEEEe-CCC--cEEEEecCC
Q 012679          372 RELLSSHGFTQNQLTLWKYP-SMVKMAELSGHTSRVLFM-AQSPDGCTVASAA-ADE--TLRFWNVFG  434 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h~~~V~~l-~~spdg~~l~s~s-~Dg--~i~iW~~~~  434 (458)
                      +.+++  +..++.+.||.+. .+. ...+..|...|..+ .|+|||+.|+..+ .|+  .++||++..
T Consensus       349 ~~~~~--~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          349 SILWS--SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CEEEE--ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             eEEEE--ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            96665  3467877777765 344 77788888888887 5999999876544 455  899999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=9.4e-23  Score=193.66  Aligned_cols=270  Identities=13%  Similarity=0.061  Sum_probs=203.0

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCC-CEEEEEEcCCCCEEEE-EecCCeEEEEeCCCceeeEEecCCC----c
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENG-PVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGH----R  226 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-~V~~v~~s~~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~----~  226 (458)
                      .+++++.++.|++||..+++......+. +.. .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+...+    .
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcC-CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4678888999999999998774333322 211 4789999999987655 4567899999999999888776433    1


Q ss_pred             ccEEEEEeC--CCeEEEEe------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          227 SRVGSLAWN--NHILTTGG------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       227 ~~v~~l~~~--~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ..+.+++|+  ++.|++++            .++.|.+||+.+... ...+.. ...+.+++|+|++++|+++  ++.|.
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~  157 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDLH  157 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence            256678884  67888876            579999999987654 344433 4567889999999988888  68999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-----------------------eEEEEECCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-----------------------CIKFWNTHT  349 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-----------------------~i~lwd~~~  349 (458)
                      +||+.++..      ...+..+.. ...++|+|++..+++++.  .++                       .|.+||+.+
T Consensus       158 ~~d~~~~~~------~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          158 VMDPEAGTL------VEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             EEETTTTEE------EEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             EEECCCCcE------eeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCC
Confidence            999987654      334433321 113378998887766543  333                       478999999


Q ss_pred             CCeeEEE---eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679          350 GACLNSV---DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET  426 (458)
Q Consensus       350 ~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~  426 (458)
                      ++.. .+   .....+..++|+|++++++++    ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.|+.
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~  302 (337)
T 1pby_B          229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSE
T ss_pred             CCce-EeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCc
Confidence            9875 32   234568899999999999885    689999999999988877643 45789999999999999999999


Q ss_pred             EEEEecCCCCcccccC
Q 012679          427 LRFWNVFGAPQVISKS  442 (458)
Q Consensus       427 i~iW~~~~~~~~~~~~  442 (458)
                      |.+||+.+++.+....
T Consensus       303 i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          303 LAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEETTTCCEEEEEE
T ss_pred             EEEEECcCCcEEEEEE
Confidence            9999998887665443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=5.8e-24  Score=223.97  Aligned_cols=281  Identities=12%  Similarity=0.160  Sum_probs=200.5

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC---CEEEEEEcCCCCEEEEEecC---------CeEEEE
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLNN---------CQVQLW  210 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~---~V~~v~~s~~g~~la~g~~d---------g~v~iw  210 (458)
                      ...+.|++ +.+++.+.||.|++||+.+++..  ..+..|..   .|.+++|||||++|++++.+         +.|.+|
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCcEE--EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            34567877 45666678999999999999874  34455554   49999999999999999874         788999


Q ss_pred             eCCCceeeEEecC--CCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc-----------------
Q 012679          211 DSTANRQLRTLRG--GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE-----------------  269 (458)
Q Consensus       211 d~~~~~~~~~~~~--~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~-----------------  269 (458)
                      |+.+++. ..+..  .|...+..++|  +|+.|+.++. +.|++||+.++.. ......+...                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEecc
Confidence            9998876 33332  24455788888  5788888876 7999999987654 3333333332                 


Q ss_pred             -eEeEEEcCCCCEEEEEECCC----------------------------------cEEEEeCCCCCCCCcceeeeeecc-
Q 012679          270 -VCGLKWSASGQQLASGGNDN----------------------------------LLHIWDRSMASSNSVTQWLHRLEE-  313 (458)
Q Consensus       270 -v~~l~~spd~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~-  313 (458)
                       +.+++|+|||++|++++.|+                                  .|++||+.++..      ...+.. 
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~------~~~l~~~  247 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH------DLEMMPP  247 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC------CEECCCC
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce------eEEeeCC
Confidence             37899999999999987653                                  799999887664      233333 


Q ss_pred             -----cccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCCeeEEEeC--CCCe----EEEEEcCCCCeEEEEecCC
Q 012679          314 -----HTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGACLNSVDT--GSQV----CALLWNKNERELLSSHGFT  381 (458)
Q Consensus       314 -----h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~~~~~~~~--~~~v----~~~~~s~~~~~l~~~~g~~  381 (458)
                           +...+..++|+|++..+++... +..+..|++||+.++++...+..  ...+    ..+.|+|+|+.|+.+.+..
T Consensus       248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence                 3678899999999875544432 22456899999999987766532  2223    3789999999888753435


Q ss_pred             CC------cEEEEeC-CCce--eeEEEeCCCCcEEE-EEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 012679          382 QN------QLTLWKY-PSMV--KMAELSGHTSRVLF-MAQSPDGCTVASAAAD---ETLRFWNVFGA  435 (458)
Q Consensus       382 d~------~i~iwd~-~~~~--~~~~~~~h~~~V~~-l~~spdg~~l~s~s~D---g~i~iW~~~~~  435 (458)
                      ++      .|.+||. ..+.  ....+..+...+.. ++|+|||+.|+..+.+   +.+++|++...
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            56      5777773 4443  14455544444554 6999999999876665   78999998643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=2.7e-23  Score=193.59  Aligned_cols=192  Identities=13%  Similarity=0.124  Sum_probs=140.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEeC-CCceeeEEecCCCcccEEEEEe-----CCCeEEEEeCCCcEEEEE
Q 012679          181 DENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDS-TANRQLRTLRGGHRSRVGSLAW-----NNHILTTGGMDGLIINND  252 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~--~dg~v~iwd~-~~~~~~~~~~~~~~~~v~~l~~-----~~~~l~sg~~dg~i~vwd  252 (458)
                      +|...|..+   ++|+.+.+++  .|+.|++|++ .+++.+..+.. |...+..++|     ++.+|++|+.|++|++||
T Consensus       134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~-~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWD  209 (356)
T 2w18_A          134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL-MPPEETILTFAEVQGMQEALLGTTIMNNIVIWN  209 (356)
T ss_dssp             EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE-CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeecc-CCCceeeEEeeccCCCCceEEEecCCCcEEEEE
Confidence            344344443   4666555543  5888999998 44777776665 7766666665     459999999999999999


Q ss_pred             ccCCCeeEEEEcccc---cceEeEEEcCCCCEE------------EEEECCCcEEEEeCCCCCCCCcceeeeee-----c
Q 012679          253 VRVRDHIVETYRGHN---QEVCGLKWSASGQQL------------ASGGNDNLLHIWDRSMASSNSVTQWLHRL-----E  312 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~---~~v~~l~~spd~~~l------------~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~  312 (458)
                      +++++. +.++.+|.   ..+++++|+|+|.++            ++|+.|++|++||..++..      +..+     .
T Consensus       210 l~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~------l~v~~~~~p~  282 (356)
T 2w18_A          210 LKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS------VGVMLYCLPP  282 (356)
T ss_dssp             TTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE------EEEEEECCCT
T ss_pred             CCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE------EEEEEeeccC
Confidence            998875 56676543   467788999999986            6688899999999987754      3222     3


Q ss_pred             ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CC-eEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQ-VCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       313 ~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~-v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      +|...+.+..++   ..++++++  .|++|+|||+.+++++.++..+ .. +..++|+|++++|++  |+.|++|+|||+
T Consensus       283 Gh~~~~lsg~~s---g~~lASgS--~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~  355 (356)
T 2w18_A          283 GQAGRFLEGDVK---DHCAAAIL--TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY  355 (356)
T ss_dssp             TCCCCEEEEEEE---TTEEEEEE--TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred             CCcceeEccccC---CCEEEEEc--CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence            555554444443   45677776  8999999999999999999754 33 446899999999998  669999999985

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.6e-22  Score=212.51  Aligned_cols=278  Identities=11%  Similarity=0.105  Sum_probs=204.9

Q ss_pred             cccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCC-----ce
Q 012679          142 YYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-----NR  216 (458)
Q Consensus       142 ~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-----~~  216 (458)
                      ..+..++|+++..++.+.++.|++||+.+++..   .+..+...+.+++|+|||++||++ .++.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVT---YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTTTEEEEEETTEEEEEETTTTEEE---EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCCCeEEEEECCEEEEEECCCCceE---EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            357789999888777788999999999988753   334456778999999999999985 789999999998     77


Q ss_pred             eeEEecCCCccc--------------EEEEEe--CCCeEEEEe---------------------------------CCCc
Q 012679          217 QLRTLRGGHRSR--------------VGSLAW--NNHILTTGG---------------------------------MDGL  247 (458)
Q Consensus       217 ~~~~~~~~~~~~--------------v~~l~~--~~~~l~sg~---------------------------------~dg~  247 (458)
                      ....... +...              +.+++|  +++.|++++                                 .+..
T Consensus       158 ~~~~~~~-~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          158 AIAVTID-GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CEESCSC-CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             cEEeccC-CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            6654443 3332              478888  578888887                                 4467


Q ss_pred             EEEEEccCCCeeEEEE-cccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCcceeeeeec--ccc---c
Q 012679          248 IINNDVRVRDHIVETY-RGHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSVTQWLHRLE--EHT---S  316 (458)
Q Consensus       248 i~vwd~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~--~h~---~  316 (458)
                      |++||+.++....... ..|...+.+++|+|||++|++++.++     .|++||+.++..      ...+.  .+.   .
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~------~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF------VRTLFVETDKHYVE  310 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE------EEEEEEEECSSCCC
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce------eeEEEEccCCCeEC
Confidence            9999998765321111 25677899999999999999988775     899999987732      11111  122   1


Q ss_pred             ceeEEEecC--CCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEeC-CCCeEE-EEEcCCCCeEEEEecCCCC----cEEE
Q 012679          317 AVKAIAWCP--FQSNLLATGGGGGDRCIKFWNTH-TGACLNSVDT-GSQVCA-LLWNKNERELLSSHGFTQN----QLTL  387 (458)
Q Consensus       317 ~v~~l~~~p--~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~~-~~~v~~-~~~s~~~~~l~~~~g~~d~----~i~i  387 (458)
                      .+..++|+|  ++. +++++.  .|+.+++|++. ++..+..+.. ...+.. +.|+|+++.|+++.. .++    .|..
T Consensus       311 ~~~~~~~sp~~dg~-~l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~-~~~~~~~~l~~  386 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQ-FIWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST-EASPLERHFYC  386 (706)
T ss_dssp             CCSCCEECTTCSSE-EEEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES-SSCTTCBEEEE
T ss_pred             ccCCceeecCCCCE-EEEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec-CCCCceEEEEE
Confidence            346789999  876 556655  78888999876 5666666644 345666 799999999887654 343    6777


Q ss_pred             EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCC
Q 012679          388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGAP  436 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~~  436 (458)
                      ||..+++ ...+. |...+..++|+|||++|+.++.+    +.|++||+.++.
T Consensus       387 ~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          387 IDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            7777765 33443 67779999999999998876544    469999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.9e-21  Score=186.22  Aligned_cols=266  Identities=11%  Similarity=0.075  Sum_probs=185.8

Q ss_pred             CCEEEEEE--CCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEeCCCce--eeEEecCCCcccEEEE
Q 012679          160 GSTVYLWD--ASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANR--QLRTLRGGHRSRVGSL  232 (458)
Q Consensus       160 d~~v~iwd--~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l  232 (458)
                      ++.|++|+  ..+++...+.... +...+..++|+|||+ |++++.   ++.|.+||+.+++  .+..+.. +...+..+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~-~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~   91 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLA-ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYV   91 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEE-ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeee-ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEE
Confidence            34566665  4566665444333 456678899999999 555554   6899999997765  3344333 56677778


Q ss_pred             Ee--CCCeEEEEe-CCCcEEEEEccCCCee--EEEEcc---------cccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          233 AW--NNHILTTGG-MDGLIINNDVRVRDHI--VETYRG---------HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       233 ~~--~~~~l~sg~-~dg~i~vwd~~~~~~~--~~~~~~---------h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      +|  ++++|++++ .++.|.+|++......  +..+..         +...+.+++|+|||+++++...++.|.+||+..
T Consensus        92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            88  577787777 7899999999643321  222211         123488899999999666666788999999983


Q ss_pred             CCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC--CCe--eEEEeC-C------CCeEEEE
Q 012679          299 ASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT--GAC--LNSVDT-G------SQVCALL  366 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~--~~~--~~~~~~-~------~~v~~~~  366 (458)
                      ...   ......+.. ....+..++|+|++..+++++.  .++.|.+|++..  ++.  +..+.. .      ..+..++
T Consensus       172 ~g~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          172 AGQ---LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             TSC---EEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             CCc---EEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence            222   111222222 2335778999999888888776  789999999874  543  223322 1      3488899


Q ss_pred             EcCCCCeEEEEecCCCCcEEEEeCC---CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEecCC
Q 012679          367 WNKNERELLSSHGFTQNQLTLWKYP---SMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-ETLRFWNVFG  434 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~~i~iwd~~---~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iW~~~~  434 (458)
                      |+|+|++|+++. ..++.|.+|++.   ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|++..
T Consensus       247 ~spdG~~l~v~~-~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          247 LSHDGHFLYVSN-RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             ECTTSCEEEEEE-ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ECCCCCEEEEEe-CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            999999887653 358899999997   446667777777778999999999998888765 8999996643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1e-20  Score=182.13  Aligned_cols=269  Identities=11%  Similarity=0.105  Sum_probs=188.9

Q ss_pred             CCEEEEEEC--CCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEEEeCCC--ce--eeEEecCCCcccE
Q 012679          160 GSTVYLWDA--SDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQLWDSTA--NR--QLRTLRGGHRSRV  229 (458)
Q Consensus       160 d~~v~iwd~--~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~iwd~~~--~~--~~~~~~~~~~~~v  229 (458)
                      ++.|++|.+  .+++...+...  +...+..++|+|||++|++++.+    |.|.+|++..  ++  .+..... +....
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~~p  102 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGADP  102 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSSCE
T ss_pred             CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCCCc
Confidence            467888865  66777666655  56778899999999999999886    7999998765  43  2333333 55567


Q ss_pred             EEEEeCCCeEEEEe-CCCcEEEEEccCCCeeE---EE--Ecc--------cccceEeEEEcCCCCEEEEEE-CCCcEEEE
Q 012679          230 GSLAWNNHILTTGG-MDGLIINNDVRVRDHIV---ET--YRG--------HNQEVCGLKWSASGQQLASGG-NDNLLHIW  294 (458)
Q Consensus       230 ~~l~~~~~~l~sg~-~dg~i~vwd~~~~~~~~---~~--~~~--------h~~~v~~l~~spd~~~l~sg~-~dg~i~iw  294 (458)
                      ..++++++.|++++ .++.|.+|++.....+.   ..  ..+        +...+.+++|+|||++|++++ .++.|.+|
T Consensus       103 ~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          103 CYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF  182 (361)
T ss_dssp             EEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence            77888888777766 67899999997544221   11  111        123457899999999776655 48899999


Q ss_pred             eCCCCCC----C-Ccce--eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeC----CCC
Q 012679          295 DRSMASS----N-SVTQ--WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDT----GSQ  361 (458)
Q Consensus       295 d~~~~~~----~-~~~~--~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~----~~~  361 (458)
                      ++.....    . ....  .......+...+..++|+|++..++++..  .++.|.+||+.+++.  +..+..    ...
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~  260 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQG  260 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence            9875442    1 0000  01112234456789999999888888765  689999999987754  333322    234


Q ss_pred             eEEEEEcCCCCeEEEEecCCCCcEEEEeCC--Cce--eeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 012679          362 VCALLWNKNERELLSSHGFTQNQLTLWKYP--SMV--KMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFG  434 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~--~~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~  434 (458)
                      ...++|+|++++|+++....++.|.+|++.  +++  .+..+.. ...+.+++|+|||++|++++ .++.|.+|++..
T Consensus       261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            679999999999987643226899999985  333  5555554 55688999999999988887 678999987753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.8e-21  Score=190.84  Aligned_cols=290  Identities=13%  Similarity=0.135  Sum_probs=189.2

Q ss_pred             eeeCCCCCCccccceeeccC-CCeEEEEcCCEEEEEECCCC-----------Cee---eEEEecCCCCCEEEEEEcCCCC
Q 012679          132 TLDAPDLVDDYYLNLLDWGS-SNVLAIALGSTVYLWDASDG-----------TTS---ELVTVDDENGPVTSVNWAPDGR  196 (458)
Q Consensus       132 ~l~~~~~~~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~-----------~~~---~~~~~~~h~~~V~~v~~s~~g~  196 (458)
                      +++.+....+..++++++++ ..+++++....+++|+....           ...   ....+ .+...|++++|+|+|+
T Consensus        27 i~~~~~~~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~  105 (434)
T 2oit_A           27 IFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNL  105 (434)
T ss_dssp             CSCCCSSCCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSC
T ss_pred             ecCCccccCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCC
Confidence            33333333345688899987 44555555445999874310           110   01112 3467899999999999


Q ss_pred             EEE----EEecCCeEEEEeCCCc--------ee---eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCe
Q 012679          197 HIA----IGLNNCQVQLWDSTAN--------RQ---LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDH  258 (458)
Q Consensus       197 ~la----~g~~dg~v~iwd~~~~--------~~---~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~  258 (458)
                      +||    +|+.|+.|+|||+.++        +.   +..+.+ |...|.+++|+   +.+|++++.||.|++||++++..
T Consensus       106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            999    6788999999998765        22   333444 89999999995   56899999999999999998754


Q ss_pred             eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------ccccceeEEEecCCCCcEE
Q 012679          259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------EHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~ll  331 (458)
                       .....+|...|++++|+|+|++|++|+.||.|++||.+ +..      ...+.       .|...|.+++|++++..++
T Consensus       185 -~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~------~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~  256 (434)
T 2oit_A          185 -VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE------KKVIPCPPFYESDHPVRVLDVLWIGTYVFAI  256 (434)
T ss_dssp             -EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE------EEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred             -eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc------cccccCCcccCCCCceeEEEEEEecCceEEE
Confidence             44556789999999999999999999999999999988 322      22222       2345899999999655555


Q ss_pred             EEeCCCCC------CeEEEEECCCCC-----eeEEE-eC-----C--CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          332 ATGGGGGD------RCIKFWNTHTGA-----CLNSV-DT-----G--SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       332 ~s~~g~~d------~~i~lwd~~~~~-----~~~~~-~~-----~--~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      +...  .|      ..+++|++.+.+     ....+ ..     .  .+...+.+-++.+.++++++ ..+.|.|+....
T Consensus       257 ~~~~--~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~-~s~dv~vl~~~~  333 (434)
T 2oit_A          257 VYAA--ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA-ASTEVSILARQS  333 (434)
T ss_dssp             EEEE--TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET-TCSBCEEEEECT
T ss_pred             EEcc--CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC-CCCceeEEEecC
Confidence            4443  33      249999998652     11111 11     1  11223444577777777643 455555555322


Q ss_pred             c---eeeEEE----------e--CCCCcEEEEEEc---------------CCCCEEEEEeCCCcEEEEecCC
Q 012679          393 M---VKMAEL----------S--GHTSRVLFMAQS---------------PDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       393 ~---~~~~~~----------~--~h~~~V~~l~~s---------------pdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      .   -....+          .  +....+..+++.               |--..|..-+.||.|..|.+..
T Consensus       334 ~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          334 DQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             TSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            1   000111          0  112223444442               1225678889999999999987

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=5.7e-21  Score=181.76  Aligned_cols=266  Identities=11%  Similarity=0.057  Sum_probs=185.2

Q ss_pred             ccceeeccC-CC-eEEEEcC-CEEEEEECC--CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CCeEEEEeC---C
Q 012679          143 YLNLLDWGS-SN-VLAIALG-STVYLWDAS--DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NCQVQLWDS---T  213 (458)
Q Consensus       143 ~~~~~~~~~-~~-~la~~~d-~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~---~  213 (458)
                      .+..+.|++ ++ +++++.+ +.|.+|++.  +++...+..+..+. .+.+++|+|+|++|++++. ++.|.+||+   .
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~  117 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL  117 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc
Confidence            355678876 33 6666665 899999998  77766666666544 7899999999998877765 889999999   4


Q ss_pred             CceeeEEecCCCcccEEEEEeC--CCeEEEEe-CCCcEEEEEccCCCeeEE----EEc-ccccceEeEEEcCCCCEEEEE
Q 012679          214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGG-MDGLIINNDVRVRDHIVE----TYR-GHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~-~dg~i~vwd~~~~~~~~~----~~~-~h~~~v~~l~~spd~~~l~sg  285 (458)
                      +.+.+..+.  ....+.+++|+  +..|++++ .++.|.+||+.+......    ... .....+.+++|+|++++|+++
T Consensus       118 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~  195 (343)
T 1ri6_A          118 PVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  195 (343)
T ss_dssp             EEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE
Confidence            444555554  33457888884  56777776 899999999987332221    222 234578889999999977665


Q ss_pred             E-CCCcEEEEeCCCCCCCCc-ceeeeeeccc---ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--C--CCeeEEE
Q 012679          286 G-NDNLLHIWDRSMASSNSV-TQWLHRLEEH---TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--T--GACLNSV  356 (458)
Q Consensus       286 ~-~dg~i~iwd~~~~~~~~~-~~~~~~~~~h---~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~--~~~~~~~  356 (458)
                      + .++.|.+||+........ ......+...   ...+..++|+|++..+++++.  .++.|.+||+.  +  .+.+..+
T Consensus       196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~  273 (343)
T 1ri6_A          196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQ  273 (343)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeee
Confidence            5 789999999964222110 1111111111   235668999999888887776  78999999998  3  3455556


Q ss_pred             eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC--CCc--eeeEEEeCCCCcEEEEEEcCCC
Q 012679          357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY--PSM--VKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~--~~~--~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      .....+..++|+|+++.++++. ..++.|.+|++  .++  +.+..+... ....+++|.|+.
T Consensus       274 ~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~  334 (343)
T 1ri6_A          274 PTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE  334 (343)
T ss_dssp             ECSSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred             cCCCccceEEECCCCCEEEEec-CCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence            6666689999999999988863 36799999954  454  344555442 345677777654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=6.1e-22  Score=208.00  Aligned_cols=278  Identities=12%  Similarity=0.132  Sum_probs=192.5

Q ss_pred             ceeeccCCCeEEEEcCCEEEEEECCCCCe--eeEEEecCC--------------CCCEEEEEEcCCCCEEEEEecCCeEE
Q 012679          145 NLLDWGSSNVLAIALGSTVYLWDASDGTT--SELVTVDDE--------------NGPVTSVNWAPDGRHIAIGLNNCQVQ  208 (458)
Q Consensus       145 ~~~~~~~~~~la~~~d~~v~iwd~~~~~~--~~~~~~~~h--------------~~~V~~v~~s~~g~~la~g~~dg~v~  208 (458)
                      +.+.|.++.+++.+.++ | +||+.+++.  ..+......              ...|.+++|+|| ++++.+ .++.|+
T Consensus        29 ~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~  104 (706)
T 2z3z_A           29 VGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLV  104 (706)
T ss_dssp             TTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEE
T ss_pred             CCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEE
Confidence            44677756677777767 8 999999986  444432211              156999999999 666666 458999


Q ss_pred             EEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccC-----CCeeEEEEcccccc------------
Q 012679          209 LWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRV-----RDHIVETYRGHNQE------------  269 (458)
Q Consensus       209 iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-----~~~~~~~~~~h~~~------------  269 (458)
                      +||+.+++......  +...+.+++|  +++.|+++ .++.|++||+.+     +.. ......+...            
T Consensus       105 ~~d~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~-~~~~~~~~~~~~~g~~~~~ee~  180 (706)
T 2z3z_A          105 GFDMLARKVTYLFD--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA-IAVTIDGTETLVYGQAVHQREF  180 (706)
T ss_dssp             EEETTTTEEEEEEC--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC-EESCSCCBTTEEESSCCGGGCT
T ss_pred             EEECCCCceEEccC--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc-EEeccCCCCCeEcccchhhhhc
Confidence            99999887655443  6667888888  46788884 689999999987     543 2323333332            


Q ss_pred             --eEeEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679          270 --VCGLKWSASGQQLASGG---------------------------------NDNLLHIWDRSMASSNSVTQWLHRLEEH  314 (458)
Q Consensus       270 --v~~l~~spd~~~l~sg~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h  314 (458)
                        +.++.|+|||++|++++                                 .+..|++||+.++...    .+.....|
T Consensus       181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~  256 (706)
T 2z3z_A          181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YLQTGEPK  256 (706)
T ss_dssp             TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----ECCCCSCT
T ss_pred             CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----eeccCCCC
Confidence              48999999999999987                                 4578999999876531    11112256


Q ss_pred             ccceeEEEecCCCCcEEEEeC--CCCCCeEEEEECCCCCeeEEEe---CCC---CeEEEEEcC--CCCeEEEEecCCCCc
Q 012679          315 TSAVKAIAWCPFQSNLLATGG--GGGDRCIKFWNTHTGACLNSVD---TGS---QVCALLWNK--NERELLSSHGFTQNQ  384 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~--g~~d~~i~lwd~~~~~~~~~~~---~~~---~v~~~~~s~--~~~~l~~~~g~~d~~  384 (458)
                      ...+.+++|+|++..++++..  +..+..|++||+.+++....+.   ...   .+..+.|+|  +++++++  +..++.
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~--~~~~g~  334 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ--SRRDGW  334 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE--ECTTSS
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE--EccCCc
Confidence            778999999999887776542  0111389999999994443332   121   246789999  9997776  446788


Q ss_pred             EEEEeCC-CceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCC-C----cEEEEecCCCC
Q 012679          385 LTLWKYP-SMVKMAELSGHTSRVLF-MAQSPDGCTVASAAAD-E----TLRFWNVFGAP  436 (458)
Q Consensus       385 i~iwd~~-~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~D-g----~i~iW~~~~~~  436 (458)
                      ++||++. ++..+..+..|...+.. ++|+|||+.|+.++.+ +    .|..|++.++.
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            8999886 67777888888888877 7999999988766654 3    55666665543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=1.7e-21  Score=205.73  Aligned_cols=274  Identities=11%  Similarity=0.133  Sum_probs=200.7

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCC---CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDG---TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~---~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      .+..++|++ +..++.+.++.|++||+.++   +.   ..+..|...+.+++|+|||++||+++. +.|++||+.+++..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM  185 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE
Confidence            366788988 45666666699999999988   54   345667788999999999999999874 59999999988766


Q ss_pred             EEecCCCccc----------------EEEEEe--CCCeEEEEeCCC---------------------------------c
Q 012679          219 RTLRGGHRSR----------------VGSLAW--NNHILTTGGMDG---------------------------------L  247 (458)
Q Consensus       219 ~~~~~~~~~~----------------v~~l~~--~~~~l~sg~~dg---------------------------------~  247 (458)
                      ..... +...                +.+++|  +++.|++++.|+                                 .
T Consensus       186 ~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          186 QLTAD-GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             ECCCC-CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EeccC-CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            55443 3322                467888  578888887765                                 7


Q ss_pred             EEEEEccC-CCeeEEEEc--ccccceEeEEEcCCCCEEEEEEC-----CCcEEEEeCCCCCCCCcceeeeeeccccc---
Q 012679          248 IINNDVRV-RDHIVETYR--GHNQEVCGLKWSASGQQLASGGN-----DNLLHIWDRSMASSNSVTQWLHRLEEHTS---  316 (458)
Q Consensus       248 i~vwd~~~-~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---  316 (458)
                      |.+||+.+ +.. .....  .|...+..++| |||++|++++.     +..|++||+.++..      ...+..+..   
T Consensus       265 l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~  336 (741)
T 2ecf_A          265 LGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ------RVLAHETSPTWV  336 (741)
T ss_dssp             EEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE------EEEEEEECSSCC
T ss_pred             EEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce------EEEEEcCCCCcC
Confidence            88999987 653 22222  47788999999 99999987764     56899999988764      333333332   


Q ss_pred             -ceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCeeEEEe-CCCCeEEE-EEcCCCCeEEEEecCCCC--cEEEEeC
Q 012679          317 -AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGACLNSVD-TGSQVCAL-LWNKNERELLSSHGFTQN--QLTLWKY  390 (458)
Q Consensus       317 -~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~~~~~~-~~~~v~~~-~~s~~~~~l~~~~g~~d~--~i~iwd~  390 (458)
                       .+..++|+|++. ++++++  .|+.++||.+. ++. ...+. +...+..+ .|+|+++.++.+.. .++  .++||++
T Consensus       337 ~~~~~~~~spdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l~~~  411 (741)
T 2ecf_A          337 PLHNSLRFLDDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG-IESARESQIYAV  411 (741)
T ss_dssp             CCCSCCEECTTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC-SSCTTCBEEEEE
T ss_pred             CcCCceEECCCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe-CCCCceEEEEEE
Confidence             456899999987 667665  78877777665 344 44443 34567777 59999998876533 444  8999998


Q ss_pred             CC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCC
Q 012679          391 PS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGA  435 (458)
Q Consensus       391 ~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~  435 (458)
                      .. +.....+.. ...+..++|+|||++|+....+    ..+.+|+..+.
T Consensus       412 ~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          412 PLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             ETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            64 555666665 6678899999999998876554    46888987543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=2.8e-20  Score=177.90  Aligned_cols=243  Identities=7%  Similarity=0.026  Sum_probs=189.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEec-------CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCC-eEEEEeCCCcEEEEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLN-------NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNH-ILTTGGMDGLIINND  252 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~-------dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~-~l~sg~~dg~i~vwd  252 (458)
                      ...+..++|+|+|+++++++.       ++.|.+||..+++.+..+..  ...+..++|  +++ +++++..++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            346889999999999988874       56899999999998888874  334566666  566 455556689999999


Q ss_pred             ccCCCeeEEEEccccc---------ceEeEEEcCCCCEEEEEE--CCCcEEEEeCCCCCCCCcceeeeeecccccceeEE
Q 012679          253 VRVRDHIVETYRGHNQ---------EVCGLKWSASGQQLASGG--NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI  321 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~~---------~v~~l~~spd~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  321 (458)
                      +.+++. +..+..+..         .+.++.|+|+++++++++  .++.|.+||..+.+.      +..+..+...+..+
T Consensus       118 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          118 AKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL------KTAIQNTGKMSTGL  190 (353)
T ss_dssp             TTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE------EEEECCCCTTCCCC
T ss_pred             CCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce------EEEecCCCCccceE
Confidence            988764 344443322         278899999999887776  478999999987655      55555456668899


Q ss_pred             EecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee
Q 012679          322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM  396 (458)
Q Consensus       322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~  396 (458)
                      +|+|++..++++.   .++.|.+||..+++.+..+..     ...+..++|+|+++.++++. ..++.|.+||..+++.+
T Consensus       191 ~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          191 ALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-SKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             EEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-SSSSEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-CCCCEEEEEECCCCcEE
Confidence            9999887777654   689999999999999888765     33578899999999888764 35689999999999988


Q ss_pred             EEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCcccc
Q 012679          397 AELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       397 ~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~~~~~  440 (458)
                      ..+.....  ..++|+|+|++++.++ .++.|.+||+.+++....
T Consensus       267 ~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          267 AKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             EEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            88775442  5799999999665555 689999999987765443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=4.8e-21  Score=177.85  Aligned_cols=224  Identities=11%  Similarity=0.140  Sum_probs=170.5

Q ss_pred             EecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccC-CCeeEEEEccc-ccceEeEEEc
Q 012679          201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRV-RDHIVETYRGH-NQEVCGLKWS  276 (458)
Q Consensus       201 g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~h-~~~v~~l~~s  276 (458)
                      ++.++.|++||+.+++......  |...|.+++|+  +.+|++++ ++.|++||+.+ +.. ......+ ...+.+++|+
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred             CCcceeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence            4578899999999988765444  88899999994  67888876 78999999987 553 3444444 4678999999


Q ss_pred             CCCCEEEEEE--CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC--CCCCe
Q 012679          277 ASGQQLASGG--NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT--HTGAC  352 (458)
Q Consensus       277 pd~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~--~~~~~  352 (458)
                      |++++|++++  .++.+.||.+......     ...+..+ ..+..++|+|++..+++++.  .|+.+++|++  .+++.
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-----PRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-----CEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCE
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-----eEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcc
Confidence            9999999999  3345555554332211     2333333 34888999999888887765  7898999985  45555


Q ss_pred             eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-------
Q 012679          353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-------  424 (458)
Q Consensus       353 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-------  424 (458)
                      .........+..+.|+|+++.++++. ..++.+.||++. ....+..+..|...+..++|+|+|++|++++.+       
T Consensus       166 ~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          166 TRLTHGEGRNDGPDYSPDGRWIYFNS-SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             EECCCSSSCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             eEcccCCCccccceECCCCCEEEEEe-cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            44445567899999999999888763 357889999886 566677788888889999999999999988876       


Q ss_pred             ----CcEEEEecCCCCc
Q 012679          425 ----ETLRFWNVFGAPQ  437 (458)
Q Consensus       425 ----g~i~iW~~~~~~~  437 (458)
                          +.|.+||+.+++.
T Consensus       245 ~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             SSEEEEEEEEETTSCSC
T ss_pred             ccCceEEEEEecCCCCc
Confidence                5699999987654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=8e-21  Score=181.29  Aligned_cols=239  Identities=10%  Similarity=0.044  Sum_probs=181.1

Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEc
Q 012679          188 SVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYR  264 (458)
Q Consensus       188 ~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~  264 (458)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+....+..++|+  ++.+ +++..++.|.+||+.++.. ...+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence            456788899999999999999999999999888875332256777884  5544 5666789999999987654 33333


Q ss_pred             -cc-----ccceEeEEEcCCCCEEEEEECC------------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          265 -GH-----NQEVCGLKWSASGQQLASGGND------------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       265 -~h-----~~~v~~l~~spd~~~l~sg~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                       .+     ...+.+++|+|||++|++++.+            +.|.+||+.++....   .+..+. +...+.+++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~-~~~~~~~~~~s~d  158 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK---PVRTFP-MPRQVYLMRAADD  158 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC---CSEEEE-CCSSCCCEEECTT
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc---eeeecc-CCCcccceeECCC
Confidence             22     2347889999999999998865            899999988744311   122332 3346889999999


Q ss_pred             CCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC----------------------------------------------
Q 012679          327 QSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS----------------------------------------------  360 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~----------------------------------------------  360 (458)
                      +. +++. +  .  .|.+||..+++.+..+....                                              
T Consensus       159 g~-l~~~-~--~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          159 GS-LYVA-G--P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             SC-EEEE-S--S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             Cc-EEEc-c--C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence            87 6663 2  2  39999999998877665332                                              


Q ss_pred             -----------------------CeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC
Q 012679          361 -----------------------QVCALLWNK-NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       361 -----------------------~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  416 (458)
                                             .+..++|+| ++++++++    ++.|.+||+.+++.+..+... ..+.+++|+|+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~  307 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGD  307 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSS
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCC-CCccceEECCCCC
Confidence                                   244667789 99998885    789999999999988877643 4577999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCcccccC
Q 012679          417 TVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       417 ~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      +|++++.++.|.+||+.+.+.+....
T Consensus       308 ~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          308 KLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCeEEEEeccccceeeeee
Confidence            99888889999999998877665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2.5e-20  Score=176.96  Aligned_cols=235  Identities=9%  Similarity=0.083  Sum_probs=177.1

Q ss_pred             EEcCCCCE-EEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeC-CCcEEEEEccCCCeeEEEEcc
Q 012679          190 NWAPDGRH-IAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGM-DGLIINNDVRVRDHIVETYRG  265 (458)
Q Consensus       190 ~~s~~g~~-la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~  265 (458)
                      .|.+++.+ ++++..++.|.+||+.+++.+..+.. +...+ +++|  +++.+++++. ++.|.+||+.++......+..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            45555555 66777889999999999999888875 45555 8888  4665655554 899999999887653555666


Q ss_pred             cccceEeEEEcCCCCEEEEEECCC---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCe-
Q 012679          266 HNQEVCGLKWSASGQQLASGGNDN---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC-  341 (458)
Q Consensus       266 h~~~v~~l~~spd~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~-  341 (458)
                      +.....+++|+|++++|+++..++   .|.+||+..+..      +..+.. .....+++|+|++..++++..  .++. 
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~------~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~  152 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF------ISTIPI-PYDAVGIAISPNGNGLILIDR--SSANT  152 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE------EEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTE
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe------EEEEEC-CCCccceEECCCCCEEEEEec--CCCce
Confidence            666665699999999999555553   899999987654      444433 345689999999988888765  5677 


Q ss_pred             EEEEECCCCCee-----EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee---eEEEeCCCCcEEEEEEcC
Q 012679          342 IKFWNTHTGACL-----NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK---MAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       342 i~lwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~---~~~~~~h~~~V~~l~~sp  413 (458)
                      |.+|++.....+     ..+..+.....++|+|++++++++ +..++.|.+||+.+++.   +..+..+ ..+..++|+|
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp  230 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR  230 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence            999998864433     333455678999999999988776 34688999999998887   7777644 5678999999


Q ss_pred             CCCEEEEEe-CCCcEEEEecCCCCc
Q 012679          414 DGCTVASAA-ADETLRFWNVFGAPQ  437 (458)
Q Consensus       414 dg~~l~s~s-~Dg~i~iW~~~~~~~  437 (458)
                      ||++|+.++ .++.|.+||+.+++.
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCCEEEEEEcCCCEEEEEECCCCce
Confidence            999776555 578899999987655

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=4.4e-20  Score=178.24  Aligned_cols=275  Identities=11%  Similarity=0.043  Sum_probs=187.2

Q ss_pred             eEEEEcC--CEEEEEEC--CCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC-CceeeEEecCCCcc
Q 012679          154 VLAIALG--STVYLWDA--SDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST-ANRQLRTLRGGHRS  227 (458)
Q Consensus       154 ~la~~~d--~~v~iwd~--~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~-~~~~~~~~~~~~~~  227 (458)
                      +++++..  +.|++|++  .++++..+.... .+...+..++|+|+|++|++++.+ .|.+||+. +++...........
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            4455543  56887764  567665444432 234468899999999999999888 99999997 77665433210012


Q ss_pred             cEEEEEeC--CCe--EEEEe-------------CCCcEEEEEccCCCeeEEEEc----ccccceEeEEEcCCCCEEEEEE
Q 012679          228 RVGSLAWN--NHI--LTTGG-------------MDGLIINNDVRVRDHIVETYR----GHNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       228 ~v~~l~~~--~~~--l~sg~-------------~dg~i~vwd~~~~~~~~~~~~----~h~~~v~~l~~spd~~~l~sg~  286 (458)
                      .+.+++|+  ++.  +++++             .+|.+.+|++.....+...+.    .+...+.+++|+|||++|+++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            23446664  553  44543             689999999975333333222    2456789999999999988776


Q ss_pred             C-CCcEEEEeCC-CCCCCCcceeeeeec--ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC--CCCee---EEEe
Q 012679          287 N-DNLLHIWDRS-MASSNSVTQWLHRLE--EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH--TGACL---NSVD  357 (458)
Q Consensus       287 ~-dg~i~iwd~~-~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~--~~~~~---~~~~  357 (458)
                      . ++.|.+||+. +++.    ..+..+.  .|...+..++|+|++..++++..  .++.|.+|++.  +++..   ..+.
T Consensus       164 ~~~~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~  237 (365)
T 1jof_A          164 LTANKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             TTTTEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             CCCCEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEE
Confidence            4 6899999997 4432    1122232  24567899999999888877764  67899999765  56643   2232


Q ss_pred             C---C----C-------CeEEEE-EcCCCCeEEEEecCCC----CcEEEEeCC-CceeeE---EEeCCCCcEEEEEEcC-
Q 012679          358 T---G----S-------QVCALL-WNKNERELLSSHGFTQ----NQLTLWKYP-SMVKMA---ELSGHTSRVLFMAQSP-  413 (458)
Q Consensus       358 ~---~----~-------~v~~~~-~s~~~~~l~~~~g~~d----~~i~iwd~~-~~~~~~---~~~~h~~~V~~l~~sp-  413 (458)
                      .   +    .       .+..++ |+|+|++|+++....+    +.|.+|++. +++...   ....+...+..++|+| 
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~  317 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC  317 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence            1   1    1       478899 9999999887643233    289999986 555432   2334555667899999 


Q ss_pred             --CCCEEEEEeCC-CcEEEEecCCC
Q 012679          414 --DGCTVASAAAD-ETLRFWNVFGA  435 (458)
Q Consensus       414 --dg~~l~s~s~D-g~i~iW~~~~~  435 (458)
                        ||++|++++.+ +.|.+|++...
T Consensus       318 ~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          318 PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CcCCCEEEEEEcCCCeEEEEEEchh
Confidence              89999998875 89999999765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=2e-20  Score=204.89  Aligned_cols=277  Identities=10%  Similarity=0.066  Sum_probs=198.6

Q ss_pred             cccceeeccC-CC-eEEEEcC------CEEEEEECCCCCeeeEEEecCCCCCE-------EEEEEcCCCCEEEEEecC--
Q 012679          142 YYLNLLDWGS-SN-VLAIALG------STVYLWDASDGTTSELVTVDDENGPV-------TSVNWAPDGRHIAIGLNN--  204 (458)
Q Consensus       142 ~~~~~~~~~~-~~-~la~~~d------~~v~iwd~~~~~~~~~~~~~~h~~~V-------~~v~~s~~g~~la~g~~d--  204 (458)
                      ..+..+.|++ +. ++.++.+      ..|++|++.+++   ...+..|...+       .+++|+|||+++++++.+  
T Consensus        53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~  129 (1045)
T 1k32_A           53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP  129 (1045)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE---EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred             CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC---eEEcccCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence            3577889987 33 5545433      389999998876   45667788778       999999999977777644  


Q ss_pred             ----CeEEEEeCCCceeeE-------------------------------------------------EecCCCcccEEE
Q 012679          205 ----CQVQLWDSTANRQLR-------------------------------------------------TLRGGHRSRVGS  231 (458)
Q Consensus       205 ----g~v~iwd~~~~~~~~-------------------------------------------------~~~~~~~~~v~~  231 (458)
                          ..|.+||+.+++...                                                 .+. +|...+.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~-~~~~~v~~  208 (1045)
T 1k32_A          130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSS  208 (1045)
T ss_dssp             STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEE
T ss_pred             CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc-CCCCcccc
Confidence                358888876654321                                                 111 25667777


Q ss_pred             EEeCCC-eEEEEeCCCcEEEEEccCCCeeEEEEcc---------------------------------------------
Q 012679          232 LAWNNH-ILTTGGMDGLIINNDVRVRDHIVETYRG---------------------------------------------  265 (458)
Q Consensus       232 l~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~---------------------------------------------  265 (458)
                      +.|+++ ++++++.+|.+.+|.+.........+..                                             
T Consensus       209 ~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~  288 (1045)
T 1k32_A          209 PVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESP  288 (1045)
T ss_dssp             EEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBC
T ss_pred             eEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCccccc
Confidence            888654 4556677788888876532111111111                                             


Q ss_pred             -----cccceEeEEEc-CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc-ceeEEEecCCCCcEEEEeCCCC
Q 012679          266 -----HNQEVCGLKWS-ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS-AVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       266 -----h~~~v~~l~~s-pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                           |...+.+++|+ |||++|++++ ++.|.+|+...+.       ...+..|.. .+..++|+ ++..+++.+   .
T Consensus       289 ~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l~~~s---~  356 (1045)
T 1k32_A          289 EDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAFIHGT---R  356 (1045)
T ss_dssp             CSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEEEEEE---T
T ss_pred             ccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeEEEEE---C
Confidence                 12246667777 7777777666 5677777765443       233556666 88999999 776666654   4


Q ss_pred             CCeEE-EEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE
Q 012679          339 DRCIK-FWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       339 d~~i~-lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~  417 (458)
                      +..+. +||+.+++......+...+..++|+|+++.|+++.  .++.|++||+.+++....+.+|...+.+++|||||++
T Consensus       357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~  434 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF  434 (1045)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred             CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence            77888 99998887655444456799999999999999854  7889999999999888888789999999999999999


Q ss_pred             EEEEeCCC----------cEEEEecCCCC
Q 012679          418 VASAAADE----------TLRFWNVFGAP  436 (458)
Q Consensus       418 l~s~s~Dg----------~i~iW~~~~~~  436 (458)
                      |++++.++          .|++||+.++.
T Consensus       435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          435 IAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             EEEEecCccccccCCCCCeEEEEECCCCc
Confidence            99887754          89999998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=205.40  Aligned_cols=281  Identities=10%  Similarity=0.123  Sum_probs=194.2

Q ss_pred             eeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC---CEEEEEEcCCCCEEEEEec---------CCeEEEEeC
Q 012679          146 LLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIGLN---------NCQVQLWDS  212 (458)
Q Consensus       146 ~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~---~V~~v~~s~~g~~la~g~~---------dg~v~iwd~  212 (458)
                      .+.|++ +.+++.+.++.|++||+.+++...+.  ..|..   .|.+++|||||++||+++.         ++.|++||+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTIL--SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEE--CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEE--ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            356766 35666778999999999999874443  32222   4889999999999999876         789999999


Q ss_pred             CCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----------------EeE
Q 012679          213 TANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----------------CGL  273 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----------------~~l  273 (458)
                      .+++.+....  ....+..++|  +|+.|+.+. ++.|++||+.++........++...|                 .++
T Consensus        98 ~~g~~~~~~~--l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           98 SNGEFVRGNE--LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTTEECCSSC--CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCCcccccee--cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            9988732111  1245777888  578888875 78999999987664222222333222                 489


Q ss_pred             EEcCCCCEEEEEECCC----------------------------------cEEEEeCCCCCCC--Ccceeeeeecccccc
Q 012679          274 KWSASGQQLASGGNDN----------------------------------LLHIWDRSMASSN--SVTQWLHRLEEHTSA  317 (458)
Q Consensus       274 ~~spd~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~--~~~~~~~~~~~h~~~  317 (458)
                      +|+|||++|++++.|.                                  .|++||+.++...  ........+..|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999988652                                  7889998875431  000000224468888


Q ss_pred             eeEEEecCCCCcEEEEeC--CCCCCeEEEEE----CCCCCeeEEE-----eCCCCeE-----EEEEcCCCCeEEEEecCC
Q 012679          318 VKAIAWCPFQSNLLATGG--GGGDRCIKFWN----THTGACLNSV-----DTGSQVC-----ALLWNKNERELLSSHGFT  381 (458)
Q Consensus       318 v~~l~~~p~~~~ll~s~~--g~~d~~i~lwd----~~~~~~~~~~-----~~~~~v~-----~~~~s~~~~~l~~~~g~~  381 (458)
                      +..++|+|++ .++++..  +.....|.+||    ..++++...+     .+...+.     .+.|+|+|+.++......
T Consensus       255 ~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          255 FSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             EEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            9999999984 5666532  11224588999    8887765544     2233454     789999999776643334


Q ss_pred             CC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC
Q 012679          382 QN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVFG  434 (458)
Q Consensus       382 d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~  434 (458)
                      ++  .|.+|++.+++ ...+..+...|..+.++ +++.|+..+.+     +.+++|.+..
T Consensus       334 ~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            44  57778877665 45666666678888888 88887777665     8899998864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=4.7e-20  Score=201.90  Aligned_cols=272  Identities=11%  Similarity=0.030  Sum_probs=208.3

Q ss_pred             ccceeecc-C-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC-CEEEEEEcCCCCEEEEEecCCeEE-EEeCCCceee
Q 012679          143 YLNLLDWG-S-SNVLAIALGSTVYLWDASDGTTSELVTVDDENG-PVTSVNWAPDGRHIAIGLNNCQVQ-LWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~-~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-~V~~v~~s~~g~~la~g~~dg~v~-iwd~~~~~~~  218 (458)
                      .+..+.|+ + +..++.+.++.|++|++.+++.   ..+..|.. .+.+++|+ ||+.|++++.++.+. +||+.+++..
T Consensus       297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~  372 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYV---LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE  372 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEETTEEEEECTTSSBE---EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             ccceeeecCCCCCEEEEEEcCEEEEEcCCCCce---EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce
Confidence            57889999 7 3445555599999999988774   34566777 89999999 999999999888898 9999877654


Q ss_pred             EEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-------
Q 012679          219 RTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN-------  289 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-------  289 (458)
                       .+. +|...+..++|  +++.|++++.++.|++||+.++.. .....+|...+.+++|+|||++|++++.++       
T Consensus       373 -~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          373 -KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             -ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             -Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence             444 38889999999  578999999999999999987764 455568899999999999999999887654       


Q ss_pred             ---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--------------
Q 012679          290 ---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--------------  352 (458)
Q Consensus       290 ---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--------------  352 (458)
                         .|++||+.++.       ...+..|...+..++|+|++..+++.+   .++...+|+......              
T Consensus       450 ~~~~i~l~d~~~g~-------~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-------IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLI  519 (1045)
T ss_dssp             CEEEEEEEETTTTE-------EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred             CCCeEEEEECCCCc-------EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCcCcchhccccccccCceeEEEEeC
Confidence               89999998753       456677888899999999988777655   444455554332211              


Q ss_pred             -----------------------------eEEEe-CCCCeEEEEEcCCCCeEEEE-----------ecCCCCcEEEEeCC
Q 012679          353 -----------------------------LNSVD-TGSQVCALLWNKNERELLSS-----------HGFTQNQLTLWKYP  391 (458)
Q Consensus       353 -----------------------------~~~~~-~~~~v~~~~~s~~~~~l~~~-----------~g~~d~~i~iwd~~  391 (458)
                                                   +..+. +...+..+.++|++..+++.           .......|.+||+.
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~  599 (1045)
T 1k32_A          520 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK  599 (1045)
T ss_dssp             TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred             CCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECC
Confidence                                         11111 23567899999999877751           12235578889998


Q ss_pred             CceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          392 SMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       392 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +++... +.   ..+..++|||||++|++++.| .|++||+..++
T Consensus       600 ~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          600 TRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             TCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             CCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            876532 32   568899999999999998877 89999997765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=6.1e-20  Score=178.26  Aligned_cols=282  Identities=11%  Similarity=0.060  Sum_probs=194.2

Q ss_pred             cccceeeccC--CCeEEEEc-CC--EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          142 YYLNLLDWGS--SNVLAIAL-GS--TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~-d~--~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      .|+....|++  ..++.++. ++  .|++||+.+++...+  ..++...+..+.|+|||++|+.+..++.|++||+.+++
T Consensus        36 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           36 NYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL--TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             hhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            4555577887  34666665 55  599999999876433  34455555577899999999999999999999999988


Q ss_pred             eeEEecCCCcccEEEEEe----CCCeEEEE----------------------eCCCcEEEEEccCCCeeEEEEcccccce
Q 012679          217 QLRTLRGGHRSRVGSLAW----NNHILTTG----------------------GMDGLIINNDVRVRDHIVETYRGHNQEV  270 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~----~~~~l~sg----------------------~~dg~i~vwd~~~~~~~~~~~~~h~~~v  270 (458)
                      ....+.. +...+....|    ++..++..                      ..++.|.+||+.++..  ..+..+...+
T Consensus       114 ~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~  190 (388)
T 3pe7_A          114 ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQENQWL  190 (388)
T ss_dssp             EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEESSCE
T ss_pred             ceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--EEeecCCccc
Confidence            7666654 5555544444    45666532                      2446899999987753  4455567778


Q ss_pred             EeEEEcC-CCCEEEEEECC------CcEEEEeCCCCCCCCcceeeeeecccc--cceeEEEecCCCCcEEEEeCC--CCC
Q 012679          271 CGLKWSA-SGQQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEHT--SAVKAIAWCPFQSNLLATGGG--GGD  339 (458)
Q Consensus       271 ~~l~~sp-d~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~ll~s~~g--~~d  339 (458)
                      ..+.|+| ||+.|+.+..+      ..|.++|......       ..+..+.  ..+..++|+|++..++++...  ..+
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (388)
T 3pe7_A          191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD  263 (388)
T ss_dssp             EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred             cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence            9999999 99999888764      3788888765443       3333333  357789999999888665431  112


Q ss_pred             CeEEEEECCCCCeeEEEeCCC------CeEEEEEcCCCCeEEEEec-------CCCCcEEEEeCCCceeeEEEeCCCC--
Q 012679          340 RCIKFWNTHTGACLNSVDTGS------QVCALLWNKNERELLSSHG-------FTQNQLTLWKYPSMVKMAELSGHTS--  404 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~g-------~~d~~i~iwd~~~~~~~~~~~~h~~--  404 (458)
                      ..|++||+.+++.........      ......|+|+|+.|+.+..       ..+..|++||+.+++. ..+..|..  
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~  342 (388)
T 3pe7_A          264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSW  342 (388)
T ss_dssp             EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCC
T ss_pred             ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcc
Confidence            349999999998543322221      0122379999998886431       3467899999998765 44555555  


Q ss_pred             ---------cEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 012679          405 ---------RVLFMAQSPDGCTVASAA-ADETLRFWNVFGAP  436 (458)
Q Consensus       405 ---------~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~~~  436 (458)
                               .+.+++|+|||+.|+.++ .+|...||.+.-..
T Consensus       343 ~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          343 KVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             cccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence                     578899999999888666 47888888775443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=1.8e-20  Score=197.30  Aligned_cols=269  Identities=10%  Similarity=0.088  Sum_probs=189.5

Q ss_pred             ccceeeccC-CC-eEEEEcC---------CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679          143 YLNLLDWGS-SN-VLAIALG---------STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       143 ~~~~~~~~~-~~-~la~~~d---------~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd  211 (458)
                      .+..++|++ ++ +++++.+         +.|++||+.+++...+....+|...+.+++|||||++||+++. +.|++||
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            477889988 34 5555443         7899999999886444444455566899999999999999876 7999999


Q ss_pred             CCCceeeEEecCCCccc------------------EEEEEe--CCCeEEEEeCCC-------------------------
Q 012679          212 STANRQLRTLRGGHRSR------------------VGSLAW--NNHILTTGGMDG-------------------------  246 (458)
Q Consensus       212 ~~~~~~~~~~~~~~~~~------------------v~~l~~--~~~~l~sg~~dg-------------------------  246 (458)
                      +.+++....... +...                  +.+++|  +++.|++++.++                         
T Consensus       141 ~~~g~~~~~~~~-~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          141 HVGKQAIRVVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSCCEEEECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             CCCCceEEEecC-CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            999887665554 3332                  378899  578888887543                         


Q ss_pred             ---------cEEEEEccCCCeeEEEEccc------ccceEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCccee
Q 012679          247 ---------LIINNDVRVRDHIVETYRGH------NQEVCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQW  307 (458)
Q Consensus       247 ---------~i~vwd~~~~~~~~~~~~~h------~~~v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~  307 (458)
                               .|++||+.++.. ...+..+      ...+..++|+|||++|++...    +..|++||+.++..      
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~------  292 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC------  292 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE------
T ss_pred             CCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc------
Confidence                     799999987653 2344433      678999999999999877653    35799999987754      


Q ss_pred             eeeecc-cccce----eEEEecCCCCcEEEE-eCCCCCC------eEEEEE-CCCCC--eeEEEe-CCCCeEE-EEEcCC
Q 012679          308 LHRLEE-HTSAV----KAIAWCPFQSNLLAT-GGGGGDR------CIKFWN-THTGA--CLNSVD-TGSQVCA-LLWNKN  370 (458)
Q Consensus       308 ~~~~~~-h~~~v----~~l~~~p~~~~ll~s-~~g~~d~------~i~lwd-~~~~~--~~~~~~-~~~~v~~-~~~s~~  370 (458)
                      ...+.. +...+    ..++|+|++..+++. +.  .++      .|.+|| ..++.  +...+. ....+.. +.|+|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd  370 (723)
T 1xfd_A          293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK  370 (723)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT
T ss_pred             eEEEEeccCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC
Confidence            222222 33333    378999999988775 43  566      577788 44444  144443 2344554 689999


Q ss_pred             CCeEEEEecCCC--CcEEEEeCCCc--eeeEEEeC---CCCcEEEEEEcCCCCEEEEEeC
Q 012679          371 ERELLSSHGFTQ--NQLTLWKYPSM--VKMAELSG---HTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       371 ~~~l~~~~g~~d--~~i~iwd~~~~--~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      ++.|+.+.. .+  +.+.||++...  .....+..   |...+..++|+|||++|+....
T Consensus       371 g~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          371 GNKIYFLST-EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             TTEEEEEES-SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCEEEEEEc-CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            999987542 34  78999988643  23334443   6677899999999998886543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=4.3e-20  Score=189.62  Aligned_cols=264  Identities=12%  Similarity=0.034  Sum_probs=184.8

Q ss_pred             cceeeccC--CCeEEEEc-CCEEEEEECCCCCeeeEEEecCCC-CCEEEEEEcCCCCEEEEEec---CCeEEEEeCCC--
Q 012679          144 LNLLDWGS--SNVLAIAL-GSTVYLWDASDGTTSELVTVDDEN-GPVTSVNWAPDGRHIAIGLN---NCQVQLWDSTA--  214 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~--  214 (458)
                      +..+.+++  ..++.++. +|++.||++.+++.   ..+..|. ..+.+++|+|| ++++++..   +....||.+..  
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            55566654  45666666 99999999977664   3344444 58999999999 77777765   44556654433  


Q ss_pred             ceeeEEecCCCcccEEEEEeCCC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC----C
Q 012679          215 NRQLRTLRGGHRSRVGSLAWNNH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND----N  289 (458)
Q Consensus       215 ~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g  289 (458)
                      ......+...+...+.+++++++ .+++.+.++.+.+||+.++..  ..+..+..  .+++|+|||++|++++.+    +
T Consensus       100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--RELARLPG--FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--EEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--EEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence            22222444323444666777764 344444555566999987653  23333333  789999999999988877    7


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEEEeC-CCCeEEEE
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNSVDT-GSQVCALL  366 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~~~~-~~~v~~~~  366 (458)
                      .|++||+.++..       ..+..|...+..++|+|++..++ ++.  .++  .|++||+.+++.. .+.. ...+..+.
T Consensus       176 ~i~~~d~~~g~~-------~~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  244 (582)
T 3o4h_A          176 SLFTSNLSSGGL-------RVFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYR  244 (582)
T ss_dssp             EEEEEETTTCCC-------EEECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred             EEEEEcCCCCCc-------eEeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence            899999887764       46678888999999999988777 443  677  8999999999887 4432 33455555


Q ss_pred             --------EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEecCC
Q 012679          367 --------WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADET---LRFWNVFG  434 (458)
Q Consensus       367 --------~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~---i~iW~~~~  434 (458)
                              |+|+|..+++  +..++.+++|++  ++...   .+.+.|.+++|+ +|+++++++.+.+   |.+|+..+
T Consensus       245 ~~~~~~~~~spdg~~~~~--~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVV--ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             CSEEEEEEECTTSCEEEE--EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             hccccceeEcCCCcEEEE--EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence                    9999955555  347899999999  55443   345678999999 9999999888754   66666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=9.1e-19  Score=167.46  Aligned_cols=248  Identities=12%  Similarity=0.083  Sum_probs=172.4

Q ss_pred             cceeeccCC-CeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC-c--
Q 012679          144 LNLLDWGSS-NVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA-N--  215 (458)
Q Consensus       144 ~~~~~~~~~-~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~-~--  215 (458)
                      ...+.|+++ ++++++.   ++.|++|++.+++...+..+..+...+..++|+|+|++|++++ .++.|.+|++.. +  
T Consensus        42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL  121 (347)
T ss_dssp             CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred             cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence            345777763 3666665   4899999998887666666556677889999999999998888 678999999963 2  


Q ss_pred             eeeEEecCC--------CcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE--EEEcc-cccceEeEEEcCCCCEE
Q 012679          216 RQLRTLRGG--------HRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV--ETYRG-HNQEVCGLKWSASGQQL  282 (458)
Q Consensus       216 ~~~~~~~~~--------~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~~-h~~~v~~l~~spd~~~l  282 (458)
                      +.+..+...        +...+.+++|  +++++++...++.|.+||+.....+.  ..+.. ....+..++|+|||++|
T Consensus       122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l  201 (347)
T 3hfq_A          122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA  201 (347)
T ss_dssp             EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence            333333221        1234788899  46766677778899999998333222  22222 23367789999999976


Q ss_pred             EE-EECCCcEEEEeCCCCCCCCcceeeeeecccc------cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-C--Ce
Q 012679          283 AS-GGNDNLLHIWDRSMASSNSVTQWLHRLEEHT------SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-G--AC  352 (458)
Q Consensus       283 ~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~--~~  352 (458)
                      ++ +..++.|.+|++......  ...+..+....      ..+..++|+|++..++++..  .++.|.+|++.. +  +.
T Consensus       202 ~v~~~~~~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~  277 (347)
T 3hfq_A          202 FLAGELSSQIASLKYDTQTGA--FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTL  277 (347)
T ss_dssp             EEEETTTTEEEEEEEETTTTE--EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCc--eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEE
Confidence            65 456889999998752221  11122222222      45788999999988877765  689999999973 2  44


Q ss_pred             eEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEE--eCCCceee
Q 012679          353 LNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLW--KYPSMVKM  396 (458)
Q Consensus       353 ~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw--d~~~~~~~  396 (458)
                      +..+.. ...+..++|+|++++|+++. ..++.|.+|  |..+++..
T Consensus       278 ~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          278 IQQISTEGDFPRDFDLDPTEAFVVVVN-QNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEECSSSCCCEEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEE
T ss_pred             eEEEecCCCCcCeEEECCCCCEEEEEE-cCCCcEEEEEEeCCCCeEE
Confidence            555554 45688999999999988864 356899999  54555543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=6.5e-20  Score=181.05  Aligned_cols=252  Identities=13%  Similarity=0.137  Sum_probs=174.8

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce----------eeEEe----cCCCc
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR----------QLRTL----RGGHR  226 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~----------~~~~~----~~~~~  226 (458)
                      +.+++|+... .      +  ....+..+++++++.++++|+.+| ++||+.....          .+...    ...+.
T Consensus        23 ~~vri~~~~~-~------~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (434)
T 2oit_A           23 KKVRIFDSPE-E------L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK   92 (434)
T ss_dssp             CEEECSCCCS-S------C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred             eeEEecCCcc-c------c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence            6788886431 1      1  234578999999999999999887 8898743210          11110    11256


Q ss_pred             ccEEEEEeC--CCeEE----EEeCCCcEEEEEccCC-----Ce-----eEEEEcccccceEeEEEcCC-CCEEEEEECCC
Q 012679          227 SRVGSLAWN--NHILT----TGGMDGLIINNDVRVR-----DH-----IVETYRGHNQEVCGLKWSAS-GQQLASGGNDN  289 (458)
Q Consensus       227 ~~v~~l~~~--~~~l~----sg~~dg~i~vwd~~~~-----~~-----~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg  289 (458)
                      ..|.+++|+  +.+|+    +|+.|+.|++||+++.     ..     ....+.+|...|.+++|+|+ +.+|++++.||
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            789999995  68888    7889999999998754     11     24556689999999999998 89999999999


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC--------CC
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--------SQ  361 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~--------~~  361 (458)
                      +|++||++....      .....+|...|.+++|+|++..+ ++|+  .||.|++||.+ ++....+...        ..
T Consensus       173 ~v~iwD~~~~~~------~~~~~~~~~~v~~v~wspdg~~l-asgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~  242 (434)
T 2oit_A          173 SIAVLQVTETVK------VCATLPSTVAVTSVCWSPKGKQL-AVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVR  242 (434)
T ss_dssp             CEEEEEESSSEE------EEEEECGGGCEEEEEECTTSSCE-EEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEE
T ss_pred             eEEEEEcCCCcc------eeeccCCCCceeEEEEcCCCCEE-EEEc--CCCcEEEEccC-CcccccccCCcccCCCCcee
Confidence            999999987643      44556788999999999986555 4554  89999999998 6666555321        26


Q ss_pred             eEEEEEcCCCCeEEEEecCCCC------cEEEEeCCCce-----eeEEEe-------CCCCcEEEEEEcCCCCEEEEEeC
Q 012679          362 VCALLWNKNERELLSSHGFTQN------QLTLWKYPSMV-----KMAELS-------GHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~d~------~i~iwd~~~~~-----~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      +.++.|++++.++++... .+|      .+++|++....     ....+.       +...+-..+.+-++.+++++++.
T Consensus       243 v~~v~w~~~~~~l~~~~~-~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~  321 (434)
T 2oit_A          243 VLDVLWIGTYVFAIVYAA-ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA  321 (434)
T ss_dssp             EEEEEEEETTEEEEEEEE-TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred             EEEEEEecCceEEEEEcc-CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence            899999998888766543 232      38999997642     112221       11222233444467676665554


Q ss_pred             -CCcEEEEecC
Q 012679          424 -DETLRFWNVF  433 (458)
Q Consensus       424 -Dg~i~iW~~~  433 (458)
                       .+.|.+....
T Consensus       322 ~s~dv~vl~~~  332 (434)
T 2oit_A          322 ASTEVSILARQ  332 (434)
T ss_dssp             TCSBCEEEEEC
T ss_pred             CCCceeEEEec
Confidence             4445555543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=4.6e-19  Score=168.03  Aligned_cols=242  Identities=11%  Similarity=0.065  Sum_probs=179.5

Q ss_pred             cceeeccCC--CeEEEE-cCCEEEEEECCCCCeeeEEEecC---CCCCEEEEEEcCCCCEEEEEe------------cCC
Q 012679          144 LNLLDWGSS--NVLAIA-LGSTVYLWDASDGTTSELVTVDD---ENGPVTSVNWAPDGRHIAIGL------------NNC  205 (458)
Q Consensus       144 ~~~~~~~~~--~~la~~-~d~~v~iwd~~~~~~~~~~~~~~---h~~~V~~v~~s~~g~~la~g~------------~dg  205 (458)
                      ...+.|+++  .+++++ .++.|++||+.+++.........   |...+.+++|+|+|++|+++.            .++
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  115 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT  115 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence            445777774  344444 46899999999988744333322   112577899999999999886            579


Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA  283 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~  283 (458)
                      .|.+||+.+++.+..+..  ...+.+++|  +++.|+++  ++.|.+||+.++.. ...+..+.. ...+.|+|+++.++
T Consensus       116 ~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~  189 (337)
T 1pby_B          116 RVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVW  189 (337)
T ss_dssp             EEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCC
T ss_pred             eEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEe
Confidence            999999999988887763  345667778  46777777  68999999987654 444443321 11347899998776


Q ss_pred             EEECCC------------------------cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC
Q 012679          284 SGGNDN------------------------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD  339 (458)
Q Consensus       284 sg~~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d  339 (458)
                      ..+.++                        .|.+||+.+++..     ...+..+...+.+++|+|++..++++     +
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~-----~  259 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREVRIMDVFYFSTAVNPAKTRAFGA-----Y  259 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECTTSSEEEEE-----E
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----EeecCCCCCceeeEEECCCCCEEEEe-----C
Confidence            554332                        4689998876541     23344566678899999988776664     5


Q ss_pred             CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                      +.|.+||+.+++.+..+..+..+.+++|+|+++.++++  ..++.|.+||+.+++.+..+..+.
T Consensus       260 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG--GALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE--SBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE--cCCCcEEEEECcCCcEEEEEEcCC
Confidence            89999999999999988888889999999999999885  358999999999999888886553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=1.2e-18  Score=166.08  Aligned_cols=232  Identities=11%  Similarity=0.028  Sum_probs=171.8

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCC-----c
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGH-----R  226 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~-----~  226 (458)
                      .+++++.++.|++||..+++........ ....+..++|+|+|++++++ ..++.|.+||+.+++.+..+...+     .
T Consensus        13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~   91 (349)
T 1jmx_B           13 YMIVTNYPNNLHVVDVASDTVYKSCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   91 (349)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECS-SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEecC-CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence            3666778999999999998874433332 11257899999999876554 568899999999999887776423     2


Q ss_pred             ccEEEEEe--CCCeEEEEeCC------------CcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCc
Q 012679          227 SRVGSLAW--NNHILTTGGMD------------GLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNL  290 (458)
Q Consensus       227 ~~v~~l~~--~~~~l~sg~~d------------g~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~  290 (458)
                      ..+.+++|  ++++|++++.+            +.|.+||+.++..  .+.... +...+.+++|+|+|+ +++++.  .
T Consensus        92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~  167 (349)
T 1jmx_B           92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--D  167 (349)
T ss_dssp             ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--S
T ss_pred             ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--c
Confidence            33667788  57788888865            8999999987432  122333 334688999999999 555544  4


Q ss_pred             EEEEeCCCCCCCCcceeeeeecc---------------------------------------------------------
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEE---------------------------------------------------------  313 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~---------------------------------------------------------  313 (458)
                      |.+||..+++..      ..+..                                                         
T Consensus       168 i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  241 (349)
T 1jmx_B          168 IYKMDVKTGKYT------VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  241 (349)
T ss_dssp             EEEECTTTCCEE------EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             EEEEeCCCCcee------ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence            999998876531      11110                                                         


Q ss_pred             -----------cccceeEEEecC-CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679          314 -----------HTSAVKAIAWCP-FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       314 -----------h~~~v~~l~~~p-~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                                 +...+..++|+| ++..++++     ++.|.+||+.+++.+..+..+..+..++|+|+++.|+++  ..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~  314 (349)
T 1jmx_B          242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG--GT  314 (349)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE--SB
T ss_pred             CCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe--cC
Confidence                       112455778889 87766654     679999999999999888888888999999999999884  36


Q ss_pred             CCcEEEEeCCCceeeEEEeCC
Q 012679          382 QNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       382 d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ++.|.+||..+++.+..+...
T Consensus       315 ~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          315 FNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SSEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEeccccceeeeeecC
Confidence            799999999999988887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=7.2e-20  Score=187.93  Aligned_cols=235  Identities=10%  Similarity=-0.029  Sum_probs=169.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeC---CCcEEEEEccC--
Q 012679          183 NGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGM---DGLIINNDVRV--  255 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~---dg~i~vwd~~~--  255 (458)
                      ..+|++++|+|||++||+++. ||+++||++.+++. ..+...+...+..++|++ .++++++.   +....+|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999999887 99999999866655 445442446899999965 45555554   45566665544  


Q ss_pred             CCeeEEEEcccccceEeEEEcCCCCE-EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          256 RDHIVETYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~spd~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      ..... .+..+ ..+...+|+||++. +++.+.++.+.+||+.++..       ..+..+..  .+++|+|+|..+++++
T Consensus       100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-------~~l~~~~~--~~~~~spDG~~la~~~  168 (582)
T 3o4h_A          100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-------RELARLPG--FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-------EEEEEESS--CEEEEEEETTEEEEEE
T ss_pred             CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-------EEeecCCC--ceEEECCCCCEEEEEE
Confidence            32222 33222 22345688888753 33334445556999877643       22323333  7899999988777554


Q ss_pred             CC-CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEE-
Q 012679          335 GG-GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMA-  410 (458)
Q Consensus       335 ~g-~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~-  410 (458)
                      .. ...+.|++||+.+++......+...+..++|+|||+.|+++  ..++  .|++||+.+++.. .+.+|...+..++ 
T Consensus       169 ~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~--~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~  245 (582)
T 3o4h_A          169 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGL--ETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP  245 (582)
T ss_dssp             EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEE--ECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred             EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEc--cCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence            21 01167999999998876554556678999999999999953  3566  8999999998887 7788887777777 


Q ss_pred             -------EcCCCCEEEEEeCCCcEEEEec
Q 012679          411 -------QSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       411 -------~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                             |+|||.++++++.||++++|++
T Consensus       246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                   9999999999999999999999

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=7.3e-18  Score=160.22  Aligned_cols=242  Identities=14%  Similarity=0.126  Sum_probs=187.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEecC------------------------CeEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNN------------------------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N  236 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~  236 (458)
                      -+.+.+|+++|+|+++++...+                        +.|.+||..+++.+..+..++-.....++++  +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4579999999999988887777                        4799999999998877765466788899994  6


Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEE---------cccccceEeEEEcC-CCCEEEEEE-CCCcEEEEeCCCCCCCCcc
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETY---------RGHNQEVCGLKWSA-SGQQLASGG-NDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~---------~~h~~~v~~l~~sp-d~~~l~sg~-~dg~i~iwd~~~~~~~~~~  305 (458)
                      +++++...++.|++||.......+..+         .++.....+++++| ++.++++.+ .++.|++||.. +..    
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~----  177 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF----  177 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE----
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE----
Confidence            788888889999999986543233444         24455789999999 788888886 68999999943 332    


Q ss_pred             eeeeeec----------ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCC
Q 012679          306 QWLHRLE----------EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNER  372 (458)
Q Consensus       306 ~~~~~~~----------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~  372 (458)
                        +..+.          .+-.....++++|++..++++..  .++.|++||..+|+.+..+..   ...+..++++|  .
T Consensus       178 --~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g  251 (329)
T 3fvz_A          178 --VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--G  251 (329)
T ss_dssp             --EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--T
T ss_pred             --EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--C
Confidence              33332          12234789999998788888876  789999999999999988853   45688999999  2


Q ss_pred             eEEEEec------CCCCcEEEEeCCCceeeEEEe---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          373 ELLSSHG------FTQNQLTLWKYPSMVKMAELS---GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       373 ~l~~~~g------~~d~~i~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .++...|      ..++.|.+|++.+++.+..+.   ++...+..|+++|+|.++++...++.|++|++...
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            3333222      345689999999999988873   66778999999999988888889999999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.9e-17  Score=159.30  Aligned_cols=263  Identities=10%  Similarity=0.039  Sum_probs=177.5

Q ss_pred             cceeeccC-CC-eEEEEcC----CEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC
Q 012679          144 LNLLDWGS-SN-VLAIALG----STVYLWDASD--GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA  214 (458)
Q Consensus       144 ~~~~~~~~-~~-~la~~~d----~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~  214 (458)
                      ...+.|++ ++ +++++.+    +.|.+|++..  ++...+.....+......+++  ++++|+++. .++.|.+|++..
T Consensus        52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~  129 (361)
T 3scy_A           52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ  129 (361)
T ss_dssp             CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred             CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence            44577777 33 5566654    7999998765  666666666656677888888  888887776 578999999975


Q ss_pred             ceeeEEe----c--C-------CCcccEEEEEeC--CCeEEEE-eCCCcEEEEEccCCCe------e------EEEEccc
Q 012679          215 NRQLRTL----R--G-------GHRSRVGSLAWN--NHILTTG-GMDGLIINNDVRVRDH------I------VETYRGH  266 (458)
Q Consensus       215 ~~~~~~~----~--~-------~~~~~v~~l~~~--~~~l~sg-~~dg~i~vwd~~~~~~------~------~~~~~~h  266 (458)
                      ...+..+    .  +       .+...+.+++|+  +++|+++ ..++.|.+|++.....      +      ......+
T Consensus       130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (361)
T 3scy_A          130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP  209 (361)
T ss_dssp             TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred             CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence            4433221    1  0       022345788884  6655554 4588999999875442      1      1222334


Q ss_pred             ccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC-CCeEEE
Q 012679          267 NQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG-DRCIKF  344 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~-d~~i~l  344 (458)
                      ...+..++|+|||+++++++ .++.|.+||+..+.... ...+.....+......++|+|++..++++..  . ++.|.+
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v  286 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAI  286 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEE
Confidence            55678999999999888777 68999999988543210 0111122233445679999999888877764  4 689999


Q ss_pred             EECC--CCC--eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC--CCceeeEEE-eCCCCcEEEEEEc
Q 012679          345 WNTH--TGA--CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKY--PSMVKMAEL-SGHTSRVLFMAQS  412 (458)
Q Consensus       345 wd~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~--~~~~~~~~~-~~h~~~V~~l~~s  412 (458)
                      |++.  +++  .+..+..+..+..++|+|++++|+++. ..++.|.+|++  .+++..... ..+...+.|++|.
T Consensus       287 ~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          287 FKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9985  455  445555566788999999999998864 36789999654  466554332 1244568888885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.3e-18  Score=183.16  Aligned_cols=282  Identities=12%  Similarity=0.108  Sum_probs=190.2

Q ss_pred             cceeeccC-CC-eEEEEc---------CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679          144 LNLLDWGS-SN-VLAIAL---------GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       144 ~~~~~~~~-~~-~la~~~---------d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~  212 (458)
                      +..+.|++ ++ ++.++.         ++.|++||+.+++......+   ...+.+++|||||++||++. ++.|++||+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence            66788988 34 444444         58999999999875110222   24588999999999999985 779999999


Q ss_pred             CCceeeEEecCCCcccE-----------------EEEEe--CCCeEEEEeCCC---------------------------
Q 012679          213 TANRQLRTLRGGHRSRV-----------------GSLAW--NNHILTTGGMDG---------------------------  246 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v-----------------~~l~~--~~~~l~sg~~dg---------------------------  246 (458)
                      .+++..+....++...|                 .+++|  +|+.|++++.|.                           
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence            98877654333333323                 47888  578898887652                           


Q ss_pred             -------cEEEEEccCCCee--EE-----EEcccccceEeEEEcCCCCEEEEEECC----CcEEEEe----CCCCCCCCc
Q 012679          247 -------LIINNDVRVRDHI--VE-----TYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWD----RSMASSNSV  304 (458)
Q Consensus       247 -------~i~vwd~~~~~~~--~~-----~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd----~~~~~~~~~  304 (458)
                             .|++||+.++...  +.     .+.+|...+..++|+||++++++....    ..|.+||    ..++..   
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~---  294 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC---  294 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC---
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce---
Confidence                   7889999866531  11     133688889999999998877775433    2488899    666544   


Q ss_pred             ceeeeee----ccccccee-----EEEecCCCCcEEE-EeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeE
Q 012679          305 TQWLHRL----EEHTSAVK-----AIAWCPFQSNLLA-TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL  374 (458)
Q Consensus       305 ~~~~~~~----~~h~~~v~-----~l~~~p~~~~ll~-s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l  374 (458)
                         ...+    ..|...+.     .++|+|++..+++ +........|.+||+.+++..........+..+.+. +++.+
T Consensus       295 ---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i  370 (719)
T 1z68_A          295 ---PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSL  370 (719)
T ss_dssp             ---CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEE
T ss_pred             ---EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEE
Confidence               2222    35666666     8899999887765 343223346888898877743322334457777777 88888


Q ss_pred             EEEecC---CCCcEEEEeCCC--ce-eeEEEe----CCCCcEEEEEEcCCCCEEEEE-eCC--CcEEEEecCCCC
Q 012679          375 LSSHGF---TQNQLTLWKYPS--MV-KMAELS----GHTSRVLFMAQSPDGCTVASA-AAD--ETLRFWNVFGAP  436 (458)
Q Consensus       375 ~~~~g~---~d~~i~iwd~~~--~~-~~~~~~----~h~~~V~~l~~spdg~~l~s~-s~D--g~i~iW~~~~~~  436 (458)
                      +.+...   .++...+|.+..  +. ....+.    +|...+..+.|+|||++++.. +.+  ..+.+|++.+++
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            776421   157788888753  32 123333    266678899999999877644 333  468899987665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2.3e-16  Score=146.49  Aligned_cols=238  Identities=16%  Similarity=0.169  Sum_probs=174.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC-----CCcccEEEEEe-C-CCeEEEEe-C-CCcEEEE
Q 012679          181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG-----GHRSRVGSLAW-N-NHILTTGG-M-DGLIINN  251 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----~~~~~v~~l~~-~-~~~l~sg~-~-dg~i~vw  251 (458)
                      ++-..+.+++++++|+++++...++.|.+||.. ++.+..+..     ++...+..+++ + ...|+.++ . ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            345678999999999988888889999999987 566665542     24467889998 3 34444444 3 8899999


Q ss_pred             EccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec--ccccceeEEEecCCCC
Q 012679          252 DVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQS  328 (458)
Q Consensus       252 d~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~  328 (458)
                      |. .+.. +..+. .+...+.+++++++|+++++...++.|.+||.... .      +..+.  .+...+..++++|++.
T Consensus       106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~------~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V------LHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             CT-TSCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E------EEEEECTTTCSSEEEEEECSSSE
T ss_pred             CC-CCcE-EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-E------EEEeCCCCccCCcEEEEECCCCC
Confidence            94 3443 34443 34467899999999998888888899999996432 2      23332  3445688999999755


Q ss_pred             cEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEEEecCCCC-cEEEEeCCCceeeEEEeCCC-
Q 012679          329 NLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFTQN-QLTLWKYPSMVKMAELSGHT-  403 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~d~-~i~iwd~~~~~~~~~~~~h~-  403 (458)
                       ++++..  .++.|++||. +++.+..+...   ..+..++++++++.+++.  ..++ .|.+|+. +++.+..+..+. 
T Consensus       177 -l~v~~~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~--~~~~~~i~~~~~-~g~~~~~~~~~~~  249 (286)
T 1q7f_A          177 -IFISDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD--NHNNFNLTIFTQ-DGQLISALESKVK  249 (286)
T ss_dssp             -EEEEEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE--CSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred             -EEEEEC--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEe--CCCCEEEEEECC-CCCEEEEEcccCC
Confidence             666654  6889999997 56666666543   468899999999877764  3454 9999995 566666665544 


Q ss_pred             -CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          404 -SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       404 -~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                       ..+.+++++|+|+++++ +.|+.|++|++....
T Consensus       250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence             34789999999987776 679999999986543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=1.6e-17  Score=161.32  Aligned_cols=275  Identities=12%  Similarity=0.072  Sum_probs=180.7

Q ss_pred             ccceeeccC-CC-eEEEEcC---CEEEEEECCCCCeeeEEEecCCCCC-EEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          143 YLNLLDWGS-SN-VLAIALG---STVYLWDASDGTTSELVTVDDENGP-VTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       143 ~~~~~~~~~-~~-~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~-V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      ++..+.|++ +. ++.+...   ..|++||+.+++...+   ..+... ...+.|+|||++|+.++.++.|.+||+.+++
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL---TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC---CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe---ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            455677877 33 4444432   3799999998875332   222323 3347899999999999999999999999887


Q ss_pred             eeEEecCCCcccEEE---EE----------------e--CCCeEEEE-----eCCCcEEEEEccCCCeeEEEEcccccce
Q 012679          217 QLRTLRGGHRSRVGS---LA----------------W--NNHILTTG-----GMDGLIINNDVRVRDHIVETYRGHNQEV  270 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~---l~----------------~--~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~h~~~v  270 (458)
                      ....... +......   +.                |  ++..++.+     ..+..|++||+.++..  ..+..+...+
T Consensus       114 ~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~  190 (396)
T 3c5m_A          114 EQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWL  190 (396)
T ss_dssp             EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCE
T ss_pred             cEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCccc
Confidence            6555543 3322211   21                2  22333322     3556899999987653  2333567788


Q ss_pred             EeEEEcC-CCCEEEEEECC------CcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeC--CCCC
Q 012679          271 CGLKWSA-SGQQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGG--GGGD  339 (458)
Q Consensus       271 ~~l~~sp-d~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~--g~~d  339 (458)
                      ..+.|+| +++.|+.++.+      ..|.+||+.....       ..+..+  ...+..++|+|++..++++..  +..+
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-------eEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            9999999 88888777654      3688888765432       222222  335788999999888777642  1122


Q ss_pred             CeEEEEECCCCCeeEEEeCCCCeEEEEEcC-CCCeEEEEec--------------CCCCcEEEEeCCCceeeEEEeCCCC
Q 012679          340 RCIKFWNTHTGACLNSVDTGSQVCALLWNK-NERELLSSHG--------------FTQNQLTLWKYPSMVKMAELSGHTS  404 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~g--------------~~d~~i~iwd~~~~~~~~~~~~h~~  404 (458)
                      +.|++||+.+++......... .. +.|+| +++.++.+.+              ..+..|.+||+.+++.. .+..+..
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~  340 (396)
T 3c5m_A          264 RVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHST  340 (396)
T ss_dssp             EEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCC
T ss_pred             ceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCC
Confidence            459999999987655433332 33 89999 9997776431              13478999999887643 4444443


Q ss_pred             -----------cEEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q 012679          405 -----------RVLFMAQSPDGCTVASAAA-DETLRFWNVF  433 (458)
Q Consensus       405 -----------~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~  433 (458)
                                 .+..++|+|||+.|+.++. ++...+|.+.
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                       2567899999998887765 5666666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=5e-17  Score=171.51  Aligned_cols=275  Identities=12%  Similarity=0.156  Sum_probs=180.2

Q ss_pred             eeeccCCC-eEEEEcCCEEEEEECCCCCeeeEEEecCCCC-----CEEEEEEcCCCCEEEEEecC---------CeEEEE
Q 012679          146 LLDWGSSN-VLAIALGSTVYLWDASDGTTSELVTVDDENG-----PVTSVNWAPDGRHIAIGLNN---------CQVQLW  210 (458)
Q Consensus       146 ~~~~~~~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-----~V~~v~~s~~g~~la~g~~d---------g~v~iw  210 (458)
                      .+.|+++. +++.+ |+.|++||+.+++...+  +.+|..     ....++|||||++|++++.+         +.+.+|
T Consensus        21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CEEECSSSEEEEEE-TTEEEEEETTTCCEEEE--ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCcEEEEc-CCcEEEEECCCCceEEE--EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            57888754 45444 99999999999987443  444442     23458899999999999876         567799


Q ss_pred             eCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----------------E
Q 012679          211 DSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----------------C  271 (458)
Q Consensus       211 d~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----------------~  271 (458)
                      |+.+++... +.. |...+...+|  +|+.|+.+ .++.|++||+.++.....+..++...+                 .
T Consensus        98 d~~~~~~~~-l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           98 DLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             ETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             ECCCCcEEE-ccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            999988654 444 7788999999  57888887 468999999987664222222333222                 3


Q ss_pred             eEEEcCCCCEEEEEECCC------------------------------------cEEEEeCCC---CCCCCcceeeeeec
Q 012679          272 GLKWSASGQQLASGGNDN------------------------------------LLHIWDRSM---ASSNSVTQWLHRLE  312 (458)
Q Consensus       272 ~l~~spd~~~l~sg~~dg------------------------------------~i~iwd~~~---~~~~~~~~~~~~~~  312 (458)
                      .+.|||||++||.++.|.                                    .|++||+.+   +....    ...+.
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~----~~~l~  250 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT----SIQIT  250 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC----EEEEC
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce----EEEec
Confidence            589999999999886332                                    477888877   52100    22232


Q ss_pred             ------ccccceeEEEecCCCCcEEEEe-CCCCCCeEEEEECCCCC----eeE--EE---eCCCCe-----EEEEEcCCC
Q 012679          313 ------EHTSAVKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGA----CLN--SV---DTGSQV-----CALLWNKNE  371 (458)
Q Consensus       313 ------~h~~~v~~l~~~p~~~~ll~s~-~g~~d~~i~lwd~~~~~----~~~--~~---~~~~~v-----~~~~~s~~~  371 (458)
                            +|...+..++|+|++..++... .+..+..|.+||+.+++    +..  .+   .+...+     ....|+|+|
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence                  3777899999999987544432 22245579999999987    221  11   122223     378899999


Q ss_pred             CeEE-EEecCCC--CcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecC
Q 012679          372 RELL-SSHGFTQ--NQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVF  433 (458)
Q Consensus       372 ~~l~-~~~g~~d--~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~  433 (458)
                      +.++ .. ...+  ..|.+||..+++.. .+......|..+.. +|++.|+..+..     +...||.+.
T Consensus       331 ~~l~~~~-s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          331 NSFYKII-SNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             SEEEEEE-ECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             CEEEEEE-EcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence            9877 43 2233  46888888776544 34444455655442 346655544432     445555553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=3.5e-17  Score=158.73  Aligned_cols=261  Identities=12%  Similarity=0.039  Sum_probs=178.0

Q ss_pred             EECCCCCeeeEEEecCCCCCEEE-----EEEcCCCCEEEEEec-CC--eEEEEeCCCceeeEEecCCCcccEEEEEe--C
Q 012679          166 WDASDGTTSELVTVDDENGPVTS-----VNWAPDGRHIAIGLN-NC--QVQLWDSTANRQLRTLRGGHRSRVGSLAW--N  235 (458)
Q Consensus       166 wd~~~~~~~~~~~~~~h~~~V~~-----v~~s~~g~~la~g~~-dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~  235 (458)
                      +|..++..  +..+..|......     .+|+|||++|+.++. +|  .|.+||+.+++....... +...+..+.|  +
T Consensus        15 ~~~~~g~~--~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spd   91 (388)
T 3pe7_A           15 QDASTGAQ--VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPD   91 (388)
T ss_dssp             ECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTT
T ss_pred             ecCCCCcc--eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCC
Confidence            45566654  5666666666666     889999999999987 66  488889998887665554 5555545566  5


Q ss_pred             CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEE--EcCCCCEEEEE----------------------ECCCcE
Q 012679          236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK--WSASGQQLASG----------------------GNDNLL  291 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~--~spd~~~l~sg----------------------~~dg~i  291 (458)
                      ++.|+.++.++.|++||+.++.. ......+...+....  +++++++++..                      ..+..|
T Consensus        92 g~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           92 DDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            78999999999999999998764 334444555454443  48999998743                      244789


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCC--CCeEEE
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTG--SQVCAL  365 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~--~~v~~~  365 (458)
                      .+||+.++..       ..+..+...+..++|+| ++..++++..+..   ...|.++|...+.........  ..+...
T Consensus       171 ~~~d~~~g~~-------~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          171 MRVDLKTGES-------TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE  243 (388)
T ss_dssp             EEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred             EEEECCCCce-------EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence            9999987653       44445667789999999 8887776654211   347888898766544333333  247788


Q ss_pred             EEcCCCCeEEEEecCCCC---cEEEEeCCCcee--eEEEeCCCCc---EEEEEEcCCCCEEEEE---------eCCCcEE
Q 012679          366 LWNKNERELLSSHGFTQN---QLTLWKYPSMVK--MAELSGHTSR---VLFMAQSPDGCTVASA---------AADETLR  428 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~---~i~iwd~~~~~~--~~~~~~h~~~---V~~l~~spdg~~l~s~---------s~Dg~i~  428 (458)
                      .|+|+|+.|+.......+   .|.+||+.+++.  +..+.++...   ...++|+|||+.|+..         ..+..|+
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence            999999988665432222   499999998764  3344331110   1123799999988754         4567899


Q ss_pred             EEecCCCCc
Q 012679          429 FWNVFGAPQ  437 (458)
Q Consensus       429 iW~~~~~~~  437 (458)
                      +||+.++..
T Consensus       324 ~~d~~~~~~  332 (388)
T 3pe7_A          324 VFNMKNGTQ  332 (388)
T ss_dssp             EEETTTTEE
T ss_pred             EEeccCCce
Confidence            999987543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=7.1e-18  Score=178.03  Aligned_cols=241  Identities=13%  Similarity=0.091  Sum_probs=168.9

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCccc-----EEEEEe--CCCeEEEEeCC---------CcE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSR-----VGSLAW--NNHILTTGGMD---------GLI  248 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~-----v~~l~~--~~~~l~sg~~d---------g~i  248 (458)
                      ...++.|+|||++++++  ||.|++||+.+++....+.. |...     ...++|  +++.|+.++.+         +.+
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            45689999999998886  99999999999988776665 4432     223555  67888888876         667


Q ss_pred             EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccccc------------
Q 012679          249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS------------  316 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------------  316 (458)
                      .+||+.+++.  ..+..|...+...+|||||+.||.+. |+.|++||+..+...     ..+..++..            
T Consensus        95 ~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-----~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           95 DIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-----RITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-----ECCSCCBTTTEEESBCCHHHH
T ss_pred             EEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-----EEcCCCCccceecCccccccc
Confidence            7999988763  45667788899999999999999985 689999998876541     111122222            


Q ss_pred             -----ceeEEEecCCCCcEEEEeC-------------------------------CCC--CCeEEEEECCC---CC--ee
Q 012679          317 -----AVKAIAWCPFQSNLLATGG-------------------------------GGG--DRCIKFWNTHT---GA--CL  353 (458)
Q Consensus       317 -----~v~~l~~~p~~~~ll~s~~-------------------------------g~~--d~~i~lwd~~~---~~--~~  353 (458)
                           ...+++|+||+..++....                               |..  ...|++||+.+   ++  ..
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                 2245899999888776531                               001  12688999998   73  22


Q ss_pred             EEEe-------CCCCeEEEEEcCCCCeEEEEecC--CCCcEEEEeCCCce----e--eEEE--eCCCCcEE-----EEEE
Q 012679          354 NSVD-------TGSQVCALLWNKNERELLSSHGF--TQNQLTLWKYPSMV----K--MAEL--SGHTSRVL-----FMAQ  411 (458)
Q Consensus       354 ~~~~-------~~~~v~~~~~s~~~~~l~~~~g~--~d~~i~iwd~~~~~----~--~~~~--~~h~~~V~-----~l~~  411 (458)
                      ..+.       +...+..+.|+|+++.++.....  .+..|.+||+.+++    +  +..+  .+|...|.     ..+|
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence            2332       33458899999999976654332  23479999998876    1  2222  45665554     7899


Q ss_pred             cCCCCEEE-EEeC-CC--cEEEEecCCCC
Q 012679          412 SPDGCTVA-SAAA-DE--TLRFWNVFGAP  436 (458)
Q Consensus       412 spdg~~l~-s~s~-Dg--~i~iW~~~~~~  436 (458)
                      +|||+.|+ ..+. +|  .|.+|++.++.
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            99999877 6654 44  57788877554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=2.5e-16  Score=151.52  Aligned_cols=267  Identities=10%  Similarity=0.016  Sum_probs=183.8

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----------CCeEEEEeCCCceeeEEecCC-----
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----------NCQVQLWDSTANRQLRTLRGG-----  224 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----------dg~v~iwd~~~~~~~~~~~~~-----  224 (458)
                      |+.|++||..+++.  +..+..+..+  .++|+|||++|+++..          ++.|.+||+.+++.+..+...     
T Consensus        30 d~~v~v~D~~t~~~--~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           30 ESRVHVYDYTNGKF--LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GCEEEEEETTTCCE--EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             cCeEEEEECCCCeE--EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            67999999999987  4555555444  8999999999999863          568999999999988887631     


Q ss_pred             CcccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEE-EcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCC
Q 012679          225 HRSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       225 ~~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~  298 (458)
                      +......+++  ++++|+++..  ++.|.+||+.+.+. +.. +. +.. ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            1233445666  6788888764  58999999997753 444 33 222 2335667765 6788889999999999865


Q ss_pred             CCCCC-cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe--eEEEeCC-----------CCeEE
Q 012679          299 ASSNS-VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC--LNSVDTG-----------SQVCA  364 (458)
Q Consensus       299 ~~~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~--~~~~~~~-----------~~v~~  364 (458)
                      ..... .......+..+..++ .+.+.+++..+++..   .++.+.++|+..+..  +..+...           .....
T Consensus       183 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~  258 (361)
T 2oiz_A          183 DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNL  258 (361)
T ss_dssp             TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSC
T ss_pred             CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeE
Confidence            32200 000001122222222 233456665555543   678999999976542  2222211           11223


Q ss_pred             EEEcCCCCeEEEEec-C--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          365 LLWNKNERELLSSHG-F--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g-~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ++++|+++.++++.. .        ..+.|.+||..+++.+.++..+.  +.+++|+|||++|++++. ++|.+||..++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            789999998887642 0        13589999999999999998877  899999999999998886 99999999988


Q ss_pred             --Ccccc
Q 012679          436 --PQVIS  440 (458)
Q Consensus       436 --~~~~~  440 (458)
                        +.+..
T Consensus       336 ~l~~~~~  342 (361)
T 2oiz_A          336 EPKLLRT  342 (361)
T ss_dssp             SCEEEEE
T ss_pred             cceeeEE
Confidence              65544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=1.6e-16  Score=165.41  Aligned_cols=281  Identities=11%  Similarity=-0.001  Sum_probs=187.6

Q ss_pred             ccceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEE---------EEEEc--CCCCE-EEEEec-CC
Q 012679          143 YLNLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVT---------SVNWA--PDGRH-IAIGLN-NC  205 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~---------~v~~s--~~g~~-la~g~~-dg  205 (458)
                      .+..+.|+++.++.+..    ++...||....+..  ...+..|...+.         ...|+  |||++ |+.+.. +.
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~  102 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ  102 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence            56667788877666655    67888998543332  445555665666         56665  99998 776654 55


Q ss_pred             eEEEEeCC--CceeeEEecCC----CcccEEEEEe--CCCeEEEEeCC----------CcEEEEEccCC-----CeeEEE
Q 012679          206 QVQLWDST--ANRQLRTLRGG----HRSRVGSLAW--NNHILTTGGMD----------GLIINNDVRVR-----DHIVET  262 (458)
Q Consensus       206 ~v~iwd~~--~~~~~~~~~~~----~~~~v~~l~~--~~~~l~sg~~d----------g~i~vwd~~~~-----~~~~~~  262 (458)
                      .|.+|++.  .......+...    |...+.+++|  +++.|++++.+          ..|++||+.+.     .. ...
T Consensus       103 ~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~  181 (662)
T 3azo_A          103 RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRE  181 (662)
T ss_dssp             CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEE
T ss_pred             eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeE
Confidence            67777765  20334444431    5667888999  57889888876          58999999872     22 344


Q ss_pred             Ec-ccccceEeEEEcCCCCEEEEEECC--------CcEEEEeCC-CCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          263 YR-GHNQEVCGLKWSASGQQLASGGND--------NLLHIWDRS-MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       263 ~~-~h~~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      +. .+...+..++|+|||++|+.++.+        ..|++||+. ++...   ........|...+..++|+|++. +++
T Consensus       182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~~l~~~~~~~~~~~~~spdg~-l~~  257 (662)
T 3azo_A          182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTRTLLGGPEEAIAQAEWAPDGS-LIV  257 (662)
T ss_dssp             SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred             EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccEEeCCCCCceEcceEECCCCe-EEE
Confidence            55 566788899999999999988755        379999998 34110   11222334567899999999988 777


Q ss_pred             EeCCCCCC--eEEEEECCCCCeeEEEeCCCC---------eEEEEEcCCCCeEEEEecCCCCcEEEE--eCCCceeeEEE
Q 012679          333 TGGGGGDR--CIKFWNTHTGACLNSVDTGSQ---------VCALLWNKNERELLSSHGFTQNQLTLW--KYPSMVKMAEL  399 (458)
Q Consensus       333 s~~g~~d~--~i~lwd~~~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~g~~d~~i~iw--d~~~~~~~~~~  399 (458)
                      ++.  .++  .|.+||..+++..........         +..++|+++++.++++.  . +.++||  |..+++ +..+
T Consensus       258 ~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~d~~~~~-~~~l  331 (662)
T 3azo_A          258 ATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG--K-GAAVLGILDPESGE-LVDA  331 (662)
T ss_dssp             EEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB--S-SSCEEEEEETTTTE-EEEC
T ss_pred             EEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE--c-CccEEEEEECCCCc-EEEe
Confidence            665  566  777788777776544433221         45788999999887753  5 777888  655555 6778


Q ss_pred             eCCCCcEEEE-EEcCCCCEEEEEeCCCcEEE--EecCCCC
Q 012679          400 SGHTSRVLFM-AQSPDGCTVASAAADETLRF--WNVFGAP  436 (458)
Q Consensus       400 ~~h~~~V~~l-~~spdg~~l~s~s~Dg~i~i--W~~~~~~  436 (458)
                      ..|...+..+ +++++.-++++++.+....+  |++.+++
T Consensus       332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8888778777 55444434455566654444  4554544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=3.5e-16  Score=150.51  Aligned_cols=260  Identities=9%  Similarity=0.063  Sum_probs=182.8

Q ss_pred             eeeccC-CC-eEEEE----------cCCEEEEEECCCCCeeeEEEecC----CCCCEEEEEEcCCCCEEEEEec--CCeE
Q 012679          146 LLDWGS-SN-VLAIA----------LGSTVYLWDASDGTTSELVTVDD----ENGPVTSVNWAPDGRHIAIGLN--NCQV  207 (458)
Q Consensus       146 ~~~~~~-~~-~la~~----------~d~~v~iwd~~~~~~~~~~~~~~----h~~~V~~v~~s~~g~~la~g~~--dg~v  207 (458)
                      .+.+++ ++ ++++.          .++.|.+||..+++......+..    +......++++|||++|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            567776 33 44443          25689999999887744333321    2345678999999999999874  5799


Q ss_pred             EEEeCCCceeeEE-ecCCCcccEEEEEe-C-CCeEEEEeCCCcEEEEEccCCCeeEEE------EcccccceEeEEEcCC
Q 012679          208 QLWDSTANRQLRT-LRGGHRSRVGSLAW-N-NHILTTGGMDGLIINNDVRVRDHIVET------YRGHNQEVCGLKWSAS  278 (458)
Q Consensus       208 ~iwd~~~~~~~~~-~~~~~~~~v~~l~~-~-~~~l~sg~~dg~i~vwd~~~~~~~~~~------~~~h~~~v~~l~~spd  278 (458)
                      .+||+.+++.+.. +..  ........+ + +..+++.+.||.+.+|++.........      +..+..++ .+.++++
T Consensus       134 ~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~  210 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD  210 (361)
T ss_dssp             EEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred             EEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence            9999999998888 653  222111122 2 367888999999999998764433311      11122222 2344677


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec--c----c----ccceeEEEecCCCCcEEEEeC--CC------CCC
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE--E----H----TSAVKAIAWCPFQSNLLATGG--GG------GDR  340 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~----h----~~~v~~l~~~p~~~~ll~s~~--g~------~d~  340 (458)
                      +..++..+.++.|.++|+.......    ...+.  .    +    ......++++|++..++++..  +.      ..+
T Consensus       211 g~~~~~~~~~~~v~v~d~~~~~~~~----~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~  286 (361)
T 2oiz_A          211 KDKAHFVSYYGNVYSADFSGDEVKV----DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA  286 (361)
T ss_dssp             SSEEEEEBTTSEEEEEECSSSSCEE----EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcee----cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence            8888888899999999987554210    11111  0    0    111223789999888887642  10      135


Q ss_pred             eEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc--eeeEEEeCCCCcEEEEEEcCCCC
Q 012679          341 CIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM--VKMAELSGHTSRVLFMAQSPDGC  416 (458)
Q Consensus       341 ~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~--~~~~~~~~h~~~V~~l~~spdg~  416 (458)
                      .|.+||+.+++.+..+..+. +..++|+|++++|+++.  . +.|.+||..++  +.+.++..+......++++|+|.
T Consensus       287 ~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n--~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          287 EIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD--G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC--S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC--C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            89999999999999999888 99999999999988864  3 99999999999  99999877777889999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=7.7e-16  Score=146.14  Aligned_cols=270  Identities=8%  Similarity=0.048  Sum_probs=184.1

Q ss_pred             ceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          145 NLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       145 ~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +.+.|++  ..++.++.++.+..|.   ++.  ...+..+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            9 PTLFYSGKSNSAVPIISESELQTIT---AEP--WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CBCCSCGGGGCSSCCCCGGGSCEEE---CEE--EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             ceeeecCCccceeEEeecccCcccc---cce--eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            3444544  2344445677788882   222  44555667778999999999988888889999999998887655443


Q ss_pred             CCCcccEEEEEeC--CCeEEEEeCC----CcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEEC------C
Q 012679          223 GGHRSRVGSLAWN--NHILTTGGMD----GLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGN------D  288 (458)
Q Consensus       223 ~~~~~~v~~l~~~--~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~------d  288 (458)
                      . +...+.+++++  +.++++...+    +.|.+||..+.... ..+.  .+...+.++.++|+|+++++...      .
T Consensus        84 ~-~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           84 S-HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             C-SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             C-CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            3 66789999995  5666666665    68999998866532 1222  34457899999999988877654      3


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-CCeeEEE------eC--C
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-GACLNSV------DT--G  359 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-~~~~~~~------~~--~  359 (458)
                      +.|..+|......       ..+..+...+..++|+|++..++++..  .++.|.+||..+ +..+..+      ..  .
T Consensus       162 ~~l~~~~~~~~~~-------~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          162 GGVYYVSPDFRTV-------TPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             EEEEEECTTSCCE-------EEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             ceEEEEeCCCCEE-------EEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence            5566666544322       222233345788999998877777654  678999999964 4433211      11  2


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC------cEEEEEEcCCCCEEEEEeCCC----cEEE
Q 012679          360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS------RVLFMAQSPDGCTVASAAADE----TLRF  429 (458)
Q Consensus       360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~------~V~~l~~spdg~~l~s~s~Dg----~i~i  429 (458)
                      ..+..++++++++.+++..  .++.|.+||. +++.+..+..+..      .+.+++|+||+..|+.++.++    .-.|
T Consensus       233 ~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l  309 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSML  309 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEE--TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEE
T ss_pred             CCCCceEECCCCCEEEEEc--CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceE
Confidence            3578899999998777643  5789999998 5666666654433      689999999987776555553    3445


Q ss_pred             EecC
Q 012679          430 WNVF  433 (458)
Q Consensus       430 W~~~  433 (458)
                      |.+.
T Consensus       310 ~~~~  313 (333)
T 2dg1_A          310 YTVN  313 (333)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=8.4e-16  Score=161.40  Aligned_cols=265  Identities=9%  Similarity=0.083  Sum_probs=182.7

Q ss_pred             EEEEEECCCCCeeeEEEe----cCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          162 TVYLWDASDGTTSELVTV----DDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~----~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      .+++.+..+++...+...    .+|...+..++|||||++||.+..++     .|++||+.+++.+....  ....+..+
T Consensus        99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--~~~~~~~~  176 (710)
T 2xdw_A           99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCM  176 (710)
T ss_dssp             EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCE
T ss_pred             EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc--cCcccceE
Confidence            445555545544333221    12444688999999999999887654     89999999998776433  22236678


Q ss_pred             Ee--CCCeEEEEeCCCc----------------EEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEEC----
Q 012679          233 AW--NNHILTTGGMDGL----------------IINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGN----  287 (458)
Q Consensus       233 ~~--~~~~l~sg~~dg~----------------i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~----  287 (458)
                      +|  +++.|+.++.++.                |++|++.++..   ++.....|...+.++.|+|||++|+.++.    
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            89  5788888887765                99999987652   22222335566889999999999988765    


Q ss_pred             -CCcEEEEeCCC------CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC-CCCCeEEEEECCCCCe--eEEE-
Q 012679          288 -DNLLHIWDRSM------ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTHTGAC--LNSV-  356 (458)
Q Consensus       288 -dg~i~iwd~~~------~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g-~~d~~i~lwd~~~~~~--~~~~-  356 (458)
                       +..|++||+..      +...     ...+..+...+.. .|+|++..+++.+.. .....|.+||+.++..  ...+ 
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~-----~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILK-----WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCC-----CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             CccEEEEEECcccccccCCccc-----eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence             67899999876      3211     3445555555554 488888888777641 1245799999988752  2333 


Q ss_pred             eCCC--CeEEEEEcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE-e---CCCcEE
Q 012679          357 DTGS--QVCALLWNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA-A---ADETLR  428 (458)
Q Consensus       357 ~~~~--~v~~~~~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s---~Dg~i~  428 (458)
                      ....  .+..+.|++++..+++..  .++  .|.+|++.+++.+..+..+.+.|..++++|++..|+.. +   ..++|.
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  408 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY  408 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence            3322  477889986666665543  455  56778887788778888888889999999999766533 2   347899


Q ss_pred             EEecCCCC
Q 012679          429 FWNVFGAP  436 (458)
Q Consensus       429 iW~~~~~~  436 (458)
                      .||+.+++
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99997765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=1.7e-15  Score=144.50  Aligned_cols=240  Identities=12%  Similarity=0.146  Sum_probs=164.1

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC---C--eEEEEeCCCceeeEEecCCCcccEEEEEe
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN---C--QVQLWDSTANRQLRTLRGGHRSRVGSLAW  234 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d---g--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~  234 (458)
                      ++.|++||+.+++...+       ..+..++|+|||++||.++.+   +  .|.+||+.+++.......  .. +..++|
T Consensus        42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~w  111 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEW  111 (347)
T ss_dssp             EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEE
T ss_pred             cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeE
Confidence            56899999999875433       358899999999999988754   3  478889888876655543  33 899999


Q ss_pred             --CCCeEEEEeCC---------------------------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679          235 --NNHILTTGGMD---------------------------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       235 --~~~~l~sg~~d---------------------------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                        +++.|+.++.+                           ..|++||+.++.. +..+.. . .+..+.|+||| +++++
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe-EEEEE
Confidence              46777777632                           5789999987653 133333 3 78899999999 77777


Q ss_pred             ECCC-------cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC-----CCCeEEEEECCCCCee
Q 012679          286 GNDN-------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG-----GDRCIKFWNTHTGACL  353 (458)
Q Consensus       286 ~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~-----~d~~i~lwd~~~~~~~  353 (458)
                      ..++       ...||.+..+.       ...+..+ ..+..+  +|++..+++.+...     ....|.+||  +++..
T Consensus       188 ~~~~~~~~~~~~~~l~~~d~~~-------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWEDGK-------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEETTE-------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             ecccccccccccccEEEeCCCc-------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE
Confidence            6542       34455444222       2333334 444444  99988887766311     135788888  56544


Q ss_pred             EEEeC-CCCeEE-EEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcE-EEE
Q 012679          354 NSVDT-GSQVCA-LLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETL-RFW  430 (458)
Q Consensus       354 ~~~~~-~~~v~~-~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i-~iW  430 (458)
                      ..... ...+.. +.|+ ++ .+++  +..++.++|| +.+++. ..+..+...|.+++|+|  .++++++.++.. .+|
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred             eccccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence            33333 345675 8999 87 5555  3468899999 876554 44445678899999999  678888877765 788


Q ss_pred             ecC
Q 012679          431 NVF  433 (458)
Q Consensus       431 ~~~  433 (458)
                      .+.
T Consensus       328 ~~~  330 (347)
T 2gop_A          328 TWD  330 (347)
T ss_dssp             EES
T ss_pred             EeC
Confidence            776

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=6.7e-16  Score=148.81  Aligned_cols=246  Identities=5%  Similarity=0.022  Sum_probs=163.1

Q ss_pred             cceeeccC-CC-eEEEEcCCEEEEEECC-CCCeeeEEEecCCCCCEEEEEEcCCCCE--EEEEe-------------cCC
Q 012679          144 LNLLDWGS-SN-VLAIALGSTVYLWDAS-DGTTSELVTVDDENGPVTSVNWAPDGRH--IAIGL-------------NNC  205 (458)
Q Consensus       144 ~~~~~~~~-~~-~la~~~d~~v~iwd~~-~~~~~~~~~~~~h~~~V~~v~~s~~g~~--la~g~-------------~dg  205 (458)
                      ...+.|++ ++ +++++.+ .|.+|++. +++...+.....+ +.+.+++|+|+|++  ++++.             .+|
T Consensus        42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            45577776 34 5555555 99999997 7776444333322 23567899999995  44543             689


Q ss_pred             eEEEEeCC-CceeeEEecC---CCcccEEEEEeC--CCeEEEEeC-CCcEEEEEcc-CCCee-EEEEc--ccccceEeEE
Q 012679          206 QVQLWDST-ANRQLRTLRG---GHRSRVGSLAWN--NHILTTGGM-DGLIINNDVR-VRDHI-VETYR--GHNQEVCGLK  274 (458)
Q Consensus       206 ~v~iwd~~-~~~~~~~~~~---~~~~~v~~l~~~--~~~l~sg~~-dg~i~vwd~~-~~~~~-~~~~~--~h~~~v~~l~  274 (458)
                      .+.+|++. .++....+..   .+...+.+++|+  +++|++++. ++.|.+||+. ++... +..+.  .|...+..++
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            99999997 4554433331   245678899994  677777654 6899999997 55421 22333  2456789999


Q ss_pred             EcCCCCEEEEEEC-CCcEEEEeCCC--CCCCCcceeeeeec----cccc------ceeEEE-ecCCCCcEEEEeCCCCC-
Q 012679          275 WSASGQQLASGGN-DNLLHIWDRSM--ASSNSVTQWLHRLE----EHTS------AVKAIA-WCPFQSNLLATGGGGGD-  339 (458)
Q Consensus       275 ~spd~~~l~sg~~-dg~i~iwd~~~--~~~~~~~~~~~~~~----~h~~------~v~~l~-~~p~~~~ll~s~~g~~d-  339 (458)
                      |+|||++|++++. ++.|.+|++..  +........+..+.    +|..      .+..++ |+|+++.++++..+ .+ 
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~  278 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKF  278 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SST
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCC
Confidence            9999999988775 78999998753  22100000011221    2222      578999 99998888766531 22 


Q ss_pred             ---CeEEEEECC-CCCeeE---EEe-CCCCeEEEEEcC---CCCeEEEEecCCCCcEEEEeCCCc
Q 012679          340 ---RCIKFWNTH-TGACLN---SVD-TGSQVCALLWNK---NERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       340 ---~~i~lwd~~-~~~~~~---~~~-~~~~v~~~~~s~---~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                         +.|.+|++. +++...   .+. ....+..++|+|   ++++|+++. ..++.|.+|++...
T Consensus       279 ~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~-~~~~~v~v~~~~~~  342 (365)
T 1jof_A          279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-DQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-SSSCEEEEEEEETT
T ss_pred             CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE-cCCCeEEEEEEchh
Confidence               289999996 666543   233 344577889999   899998863 34689999998655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.71  E-value=2e-14  Score=134.02  Aligned_cols=237  Identities=10%  Similarity=0.060  Sum_probs=170.6

Q ss_pred             EecCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679          178 TVDDENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~  254 (458)
                      .+..+.....+++|+|+|+ +++++..++.|..||..++  ...+.. +...+.+++++  +.++++...++.|.+||..
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            3334566788999999998 7788888999999999887  555554 66788999994  6777666667899999997


Q ss_pred             CCCeeEEEEcc----cccceEeEEEcCCCCEEEEE----E-------------CCCcEEEEeCCCCCCCCcceeeeeecc
Q 012679          255 VRDHIVETYRG----HNQEVCGLKWSASGQQLASG----G-------------NDNLLHIWDRSMASSNSVTQWLHRLEE  313 (458)
Q Consensus       255 ~~~~~~~~~~~----h~~~v~~l~~spd~~~l~sg----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~  313 (458)
                      ++.. ......    ....+..++++|+|+++++.    +             ..+.|..++.. + .      ...+..
T Consensus        99 ~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~------~~~~~~  169 (296)
T 3e5z_A           99 GGEW-ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-T------LSAPIR  169 (296)
T ss_dssp             TCCE-EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-C------EEEEEC
T ss_pred             CCcE-EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-C------EEEeec
Confidence            6653 222111    12346789999999988873    2             13456666644 2 2      333445


Q ss_pred             cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC-CCCe---eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679          314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH-TGAC---LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLW  388 (458)
Q Consensus       314 h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~-~~~~---~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw  388 (458)
                      +......++|+|++..+ ++..  .++.|.+||+. ++..   ...+. ....+..++++++|+.+++.    ++.|.+|
T Consensus       170 ~~~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~  242 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----GDGVHVL  242 (296)
T ss_dssp             CCSSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE----TTEEEEE
T ss_pred             CCCCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc----CCeEEEE
Confidence            56677899999988777 7665  78899999987 5654   23331 23446789999999866653    6789999


Q ss_pred             eCCCceeeEEEeCCCCcEEEEEE-cCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          389 KYPSMVKMAELSGHTSRVLFMAQ-SPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       389 d~~~~~~~~~~~~h~~~V~~l~~-spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +.. ++.+..+..+.. +.+++| +|+++.|++++.+   .+|.+......
T Consensus       243 ~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~~~~~  288 (296)
T 3e5z_A          243 TPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST---EFWSIETNVRG  288 (296)
T ss_dssp             CTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT---EEEEEECSCCB
T ss_pred             CCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC---eEEEEEccccc
Confidence            986 778888887777 999999 6899999888877   45555544433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=3.9e-14  Score=143.55  Aligned_cols=268  Identities=10%  Similarity=0.078  Sum_probs=194.3

Q ss_pred             EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCC--CceeeEEecCCCcccEEEE
Q 012679          155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST--ANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       155 la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~v~~l  232 (458)
                      ++...++.|.++|..++++  +.++.. ...+..+.|+|||+++++++.++.|.+||+.  +++.+.++..+.  ....+
T Consensus       171 V~~~~~~~V~viD~~t~~v--~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~P~~i  245 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTYEI--KTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSI  245 (567)
T ss_dssp             EEETTTTEEEEEETTTCCE--EEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEE
T ss_pred             EEeCCCCeEEEEECCCCeE--EEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--CCcee
Confidence            3344578999999999987  444443 3467899999999999999999999999995  888888887523  34566


Q ss_pred             EeC------CCeEEEEe-CCCcEEEEEccCCCeeEEEEcc----------ccc-ceEeEEEcCCCCEE-EEEECCCcEEE
Q 012679          233 AWN------NHILTTGG-MDGLIINNDVRVRDHIVETYRG----------HNQ-EVCGLKWSASGQQL-ASGGNDNLLHI  293 (458)
Q Consensus       233 ~~~------~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~----------h~~-~v~~l~~spd~~~l-~sg~~dg~i~i  293 (458)
                      +++      ++++++++ .++.|.++|..+.+. +..+..          |.. .+..+..++++..+ +....+|.|.+
T Consensus       246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            664      66666665 469999999887664 333321          222 57788889886655 44456799999


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCe---EEEE-Ec
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQV---CALL-WN  368 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v---~~~~-~s  368 (458)
                      +|.......    .+..+ ........+.|+|++.+++++..  .++.|.++|+.+++.+..+.. +...   .... ++
T Consensus       325 vd~~~~~~~----~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~  397 (567)
T 1qks_A          325 VDYTDLNNL----KTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH  397 (567)
T ss_dssp             EETTCSSEE----EEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred             EecCCCccc----eeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence            998765421    02222 22344667899999999988876  678999999999998888876 3211   1222 58


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCC-------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC-------CCcEEEEecCC
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPS-------MVKMAELSGHTSRVLFMAQSPDGCTVASAAA-------DETLRFWNVFG  434 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~-------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg~i~iW~~~~  434 (458)
                      |++..++++....++.|.++|..+       ++.+.++......-..+..+|++++|.....       .++|.++|+.+
T Consensus       398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~  477 (567)
T 1qks_A          398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA  477 (567)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred             CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence            886666655444578999999988       7788888765444456889999999987663       35999999987


Q ss_pred             C
Q 012679          435 A  435 (458)
Q Consensus       435 ~  435 (458)
                      .
T Consensus       478 ~  478 (567)
T 1qks_A          478 M  478 (567)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=6.3e-16  Score=149.99  Aligned_cols=259  Identities=10%  Similarity=0.035  Sum_probs=169.7

Q ss_pred             EEEECCCCCeeeEEEecCCCCC-----EEEEEEcCCCCEEEEEecC---CeEEEEeCCCceeeEEecCCCcccEEEEEe-
Q 012679          164 YLWDASDGTTSELVTVDDENGP-----VTSVNWAPDGRHIAIGLNN---CQVQLWDSTANRQLRTLRGGHRSRVGSLAW-  234 (458)
Q Consensus       164 ~iwd~~~~~~~~~~~~~~h~~~-----V~~v~~s~~g~~la~g~~d---g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-  234 (458)
                      ..+|..++..  +..+..+...     +.+++|+|||++|+.+...   ..|.+||+.+++....... +......+.| 
T Consensus        13 ~~~d~~~g~~--~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~s   89 (396)
T 3c5m_A           13 TFVDSDTQVK--VTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFIS   89 (396)
T ss_dssp             EEECTTTCCE--EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-SCBCTTTCEEC
T ss_pred             eeecCCCCcc--eEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC-CCCccccceEC
Confidence            3446677764  4444444333     6788999999998887653   3788899988876543332 3222323566 


Q ss_pred             -CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEe-------------------EEEcCCCCEEEEE-----ECCC
Q 012679          235 -NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG-------------------LKWSASGQQLASG-----GNDN  289 (458)
Q Consensus       235 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-------------------l~~spd~~~l~sg-----~~dg  289 (458)
                       +++.|+.++.++.|++||+.++.. ......+......                   +.|+|+++.++.+     ..+.
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           90 TDERAFFYVKNELNLMKVDLETLEE-QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             CCCCEEEEEEcCCcEEEEECCCCCc-EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence             578999999999999999987653 2333323332222                   3567888776654     4567


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecC-CCCcEEEEeCCCCC---CeEEEEECCCCCeeEEEeC--CCCeE
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP-FQSNLLATGGGGGD---RCIKFWNTHTGACLNSVDT--GSQVC  363 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~~~~~--~~~v~  363 (458)
                      .|.+||+.++..       ..+..+...+..++|+| ++..++++..+..+   ..|.+||+.+++.......  ...+.
T Consensus       169 ~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          169 RLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT  241 (396)
T ss_dssp             EEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred             eEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence            899999887653       23334667788999999 66666665432111   5799999877654433332  22477


Q ss_pred             EEEEcCCCCeEEEEecC-CC--CcEEEEeCCCceeeEEEeCCCCcEEEEEEcC-CCCEEEEEe----------------C
Q 012679          364 ALLWNKNERELLSSHGF-TQ--NQLTLWKYPSMVKMAELSGHTSRVLFMAQSP-DGCTVASAA----------------A  423 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~-~d--~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s----------------~  423 (458)
                      .+.|+|+++.|+.+... ..  +.|.+||+.+++...... ... .. +.|+| ||+++++++                .
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            89999999988765321 12  449999998876543222 112 23 89999 999888765                3


Q ss_pred             CCcEEEEecCCCC
Q 012679          424 DETLRFWNVFGAP  436 (458)
Q Consensus       424 Dg~i~iW~~~~~~  436 (458)
                      ++.|++||+.++.
T Consensus       319 ~~~i~~~d~~~~~  331 (396)
T 3c5m_A          319 DPFLYVLNTKAKS  331 (396)
T ss_dssp             CCEEEEEETTTTB
T ss_pred             CCcEEEEecccCc
Confidence            4789999997664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=1.8e-15  Score=157.58  Aligned_cols=242  Identities=8%  Similarity=-0.039  Sum_probs=168.6

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEE--ecCCeEEEEeCCCceeeEEecCCCcccEE---------EEEe----CCCe-EEEE
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIG--LNNCQVQLWDSTANRQLRTLRGGHRSRVG---------SLAW----NNHI-LTTG  242 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g--~~dg~v~iwd~~~~~~~~~~~~~~~~~v~---------~l~~----~~~~-l~sg  242 (458)
                      +.+|...|..++|++++-+++..  ..++...||....+...+.+.. +...+.         ...|    +++. |+.+
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-CCccccccccccCCccceeeeecCCCeEEEEE
Confidence            45678889999999887666666  4578899998655555566655 544444         4434    4676 6655


Q ss_pred             eC-CCcEEEEEcc--C-CCeeEEEEcc-----cccceEeEEEcCCCCEEEEEECC----------CcEEEEeCCC-----
Q 012679          243 GM-DGLIINNDVR--V-RDHIVETYRG-----HNQEVCGLKWSASGQQLASGGND----------NLLHIWDRSM-----  298 (458)
Q Consensus       243 ~~-dg~i~vwd~~--~-~~~~~~~~~~-----h~~~v~~l~~spd~~~l~sg~~d----------g~i~iwd~~~-----  298 (458)
                      +. +..|.++++.  . +.  ...+..     |...+.+++|+|||+.|++++.|          ..|++||+..     
T Consensus        98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            43 5677777765  2 32  344444     67788999999999999998877          5899999887     


Q ss_pred             -CCCCCcceeeeeec-ccccceeEEEecCCCCcEEEEeCCC-----CCCeEEEEECC-CC---CeeEEEeC-CCCeEEEE
Q 012679          299 -ASSNSVTQWLHRLE-EHTSAVKAIAWCPFQSNLLATGGGG-----GDRCIKFWNTH-TG---ACLNSVDT-GSQVCALL  366 (458)
Q Consensus       299 -~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~-----~d~~i~lwd~~-~~---~~~~~~~~-~~~v~~~~  366 (458)
                       +.       ...+. .+...+..++|+|++..++++....     ....|++||+. ++   +....... ...+..+.
T Consensus       176 ~~~-------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          176 RSA-------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             GGG-------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             CCc-------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence             33       23444 5567788999999988887665311     11479999999 57   34333333 56789999


Q ss_pred             EcCCCCeEEEEecCCCC--cEEEEeCCCceeeEEEeCCCCc--------EEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          367 WNKNERELLSSHGFTQN--QLTLWKYPSMVKMAELSGHTSR--------VLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~--~i~iwd~~~~~~~~~~~~h~~~--------V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      |+|+|+.++++  ..++  .|.+||..+++.......+...        +..++|+|+++++++++. +.++||.+.
T Consensus       249 ~spdg~l~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          249 WAPDGSLIVAT--DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             ECTTSCEEEEE--CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             ECCCCeEEEEE--CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            99999955543  3566  6777776666544333333222        567899999999999999 999999554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=2.4e-14  Score=131.35  Aligned_cols=238  Identities=8%  Similarity=-0.034  Sum_probs=165.3

Q ss_pred             CEEEEEEcCCCCEEE-EEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          185 PVTSVNWAPDGRHIA-IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       185 ~V~~v~~s~~g~~la-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      ...+++++++|++++ +...++.|.+||..+.... .+...+...+.+++++  +.++++.. ++.|.+||......  .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--T  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--e
Confidence            688999999999666 4467889999997665432 2222244567788885  56555544 88999999875442  2


Q ss_pred             EEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679          262 TYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR  340 (458)
Q Consensus       262 ~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~  340 (458)
                      .+. .....+.+++++++|+++++...++.|.+|+......      ..........+..+++++++. ++++..  .++
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~------~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~  171 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ------TVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNN  171 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC------EECCCCSCCSCCCEEECTTCC-EEEEEG--GGT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee------EeeccccCCCceeEEEeCCCC-EEEEEC--CCC
Confidence            222 2335688999999999888877788999997554332      111222334678899999765 666654  578


Q ss_pred             eEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679          341 CIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA  419 (458)
Q Consensus       341 ~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~  419 (458)
                      .|.+||...+......... ..+..+++++++..+++  ...++.|.+|+............+...+.+++++++|++++
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence            9999998877654433222 56889999999966655  33578999999876544332223346789999999999889


Q ss_pred             EEeCCCcEEEEecCCCCc
Q 012679          420 SAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       420 s~s~Dg~i~iW~~~~~~~  437 (458)
                      +...++.|+++++...+.
T Consensus       250 ~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          250 ADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEGGGTEEEEECCCGGGS
T ss_pred             EECCCCEEEEEcCCCccc
Confidence            888999999999876554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=7.8e-14  Score=129.24  Aligned_cols=231  Identities=10%  Similarity=0.151  Sum_probs=162.4

Q ss_pred             cceeeccC-CCeEEE-EcCCEEEEEECCCCCeeeEEEec------CCCCCEEEEEE-cCCCCEEEEEec-CCeEEEEeCC
Q 012679          144 LNLLDWGS-SNVLAI-ALGSTVYLWDASDGTTSELVTVD------DENGPVTSVNW-APDGRHIAIGLN-NCQVQLWDST  213 (458)
Q Consensus       144 ~~~~~~~~-~~~la~-~~d~~v~iwd~~~~~~~~~~~~~------~h~~~V~~v~~-s~~g~~la~g~~-dg~v~iwd~~  213 (458)
                      ...+.+++ ++++++ ..++.|++||.. ++.  +..+.      ++...+.++++ .++++++++... ++.|.+|| .
T Consensus        32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~  107 (286)
T 1q7f_A           32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q  107 (286)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred             CceEEECCCCCEEEEECCCCEEEEECCC-CcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence            34455655 455555 457899999987 444  23332      23457899999 467766666543 78999999 6


Q ss_pred             CceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEECCC
Q 012679          214 ANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGNDN  289 (458)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg  289 (458)
                      +++.+..+...+...+.+++++  +.++++...++.|.+||... . .+..+.  .+...+.+++++++|+++++...++
T Consensus       108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  185 (286)
T 1q7f_A          108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  185 (286)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCC
Confidence            6777777754455678899984  67777777889999999653 3 233332  4456789999999999888888899


Q ss_pred             cEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCCcEEEEeCCCCCC-eEEEEECCCCCeeEEEeCC---CCeE
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQSNLLATGGGGGDR-CIKFWNTHTGACLNSVDTG---SQVC  363 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~ll~s~~g~~d~-~i~lwd~~~~~~~~~~~~~---~~v~  363 (458)
                      .|++||.... .      +..+..+  ...+..+++++++ .++++..  .++ .|.+||. +++.+..+...   ..+.
T Consensus       186 ~i~~~~~~g~-~------~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  254 (286)
T 1q7f_A          186 CVKVFNYEGQ-Y------LRQIGGEGITNYPIGVGINSNG-EILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCF  254 (286)
T ss_dssp             EEEEEETTCC-E------EEEESCTTTSCSEEEEEECTTC-CEEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred             EEEEEcCCCC-E------EEEEccCCccCCCcEEEECCCC-CEEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence            9999997432 2      3344332  3568899999976 5666654  554 9999995 57777766543   2477


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCce
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMV  394 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~  394 (458)
                      .++++++++.+++ .  .++.|++|++....
T Consensus       255 ~i~~~~~g~l~vs-~--~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          255 DVALMDDGSVVLA-S--KDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEETTTEEEEE-E--TTTEEEEEECSCCC
T ss_pred             eEEECCCCcEEEE-C--CCCeEEEEEccccc
Confidence            9999999975555 3  48999999986543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=2.4e-12  Score=119.44  Aligned_cols=271  Identities=7%  Similarity=-0.066  Sum_probs=184.9

Q ss_pred             ccceeeccC-CCeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS-SNVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+..+..++ ++++.+.. ++.|.+||.. ++... .....+...+.+++++++|.+.++...++.|..||.. ++. ..
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~   91 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE   91 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence            345566655 56666665 6899999988 66532 2333345779999999999987777668899999976 332 22


Q ss_pred             ecC-CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          221 LRG-GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       221 ~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      +.. .....+.+++++  +.++++...++.|..||. ++.........+...+.++++.++|+++++...++.|.+||. 
T Consensus        92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-  169 (299)
T 2z2n_A           92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-  169 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred             EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence            321 145578888885  566666667889999998 444322223334567899999999988887777889999998 


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNEREL  374 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l  374 (458)
                      .+...     ...+..+...+..+++.+++. ++++..  .++.|..||. +++... +..   ...+..++++++++.+
T Consensus       170 ~g~~~-----~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          170 SGDIT-----EFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             TCCEE-----EEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEE
T ss_pred             CCcEE-----EeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEE
Confidence            44321     111233445678999999755 555543  5789999999 776443 322   3568999999999866


Q ss_pred             EEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ++  ...++.|.+||. +++... .+..+...+.++++ ++|.+.++.. .+.|..++..+
T Consensus       240 v~--~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          240 FT--EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             EE--ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             Ee--ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            65  335788999998 443222 23345567999999 9998777655 56666676654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.67  E-value=3e-15  Score=156.84  Aligned_cols=263  Identities=9%  Similarity=-0.013  Sum_probs=175.8

Q ss_pred             CEEEEEECCCCCeeeEEEec----CCCCCEEEEEEcCCCCEEEEEe-----cCCeEEEEeCCCceee-EEecCCCcccEE
Q 012679          161 STVYLWDASDGTTSELVTVD----DENGPVTSVNWAPDGRHIAIGL-----NNCQVQLWDSTANRQL-RTLRGGHRSRVG  230 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~----~h~~~V~~v~~s~~g~~la~g~-----~dg~v~iwd~~~~~~~-~~~~~~~~~~v~  230 (458)
                      +.|++.+...++...+....    +|...+..++|||||++||.+.     .+..|++||+.+++.+ ....  ......
T Consensus        94 ~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~~~~~  171 (695)
T 2bkl_A           94 AILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--EGGKYA  171 (695)
T ss_dssp             CEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--SCCTTC
T ss_pred             EEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc--Cccccc
Confidence            34666666666654444322    3555799999999999999543     3458999999998865 2111  111125


Q ss_pred             EEEe--CCCeEEEEeCCCc-------------EEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCC---
Q 012679          231 SLAW--NNHILTTGGMDGL-------------IINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDN---  289 (458)
Q Consensus       231 ~l~~--~~~~l~sg~~dg~-------------i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg---  289 (458)
                      .++|  +++.|+.++.+..             |++|++.++..   ++.....|...+.++.|+|||++|+.++.++   
T Consensus       172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  251 (695)
T 2bkl_A          172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE  251 (695)
T ss_dssp             CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred             ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence            7888  5788998888776             99999987652   3333344566788999999999998887666   


Q ss_pred             -cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCCe---eEEEeC--CCCe
Q 012679          290 -LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGAC---LNSVDT--GSQV  362 (458)
Q Consensus       290 -~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~~---~~~~~~--~~~v  362 (458)
                       .|.+||...+.       ...+..+...+....| +++. +++... +..++.|.+||+.++..   ...+..  ...+
T Consensus       252 ~~l~~~~~~~~~-------~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l  322 (695)
T 2bkl_A          252 NDVYWKRPGEKD-------FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL  322 (695)
T ss_dssp             EEEEEECTTCSS-------CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred             eEEEEEcCCCCc-------eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence             67777654332       3444455556666667 5566 666543 12368999999988763   333333  3347


Q ss_pred             EEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeCC-CCcEEEEEEcCCCCEEEEEe----CCCcEEEEecCCCC
Q 012679          363 CALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSGH-TSRVLFMAQSPDGCTVASAA----ADETLRFWNVFGAP  436 (458)
Q Consensus       363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s----~Dg~i~iW~~~~~~  436 (458)
                      ..+.|+ ++..+++  ...++..+||.+. +++....+..+ .+.|..++++|++..|+...    ..++|++||+.+++
T Consensus       323 ~~~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          323 LSVSIV-GGHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEE-TTEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEE-CCEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            778888 4444444  3367777777554 45556666655 66788899999998776332    34789999998765


Q ss_pred             c
Q 012679          437 Q  437 (458)
Q Consensus       437 ~  437 (458)
                      .
T Consensus       400 ~  400 (695)
T 2bkl_A          400 S  400 (695)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=7.1e-14  Score=132.55  Aligned_cols=261  Identities=9%  Similarity=0.020  Sum_probs=180.3

Q ss_pred             CCEEEEEECCCCCeeeEEEe--c--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-
Q 012679          160 GSTVYLWDASDGTTSELVTV--D--DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-  234 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~--~--~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-  234 (458)
                      ++.|.+||.++++.......  .  ........+.+. +++..++...++.|.+||..+++.+.++.  .......+++ 
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~   92 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFL   92 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEe
Confidence            58999999999876321100  0  122446778774 34455555567899999999999988886  4456777887 


Q ss_pred             CCCeEEEEe-CCCcEEEEEccCCCeeEEEEcccc-----cceEeEEEcCCCCEEEEEE--CCCcEEEEeCCCCCCCCcce
Q 012679          235 NNHILTTGG-MDGLIINNDVRVRDHIVETYRGHN-----QEVCGLKWSASGQQLASGG--NDNLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       235 ~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~h~-----~~v~~l~~spd~~~l~sg~--~dg~i~iwd~~~~~~~~~~~  306 (458)
                      .+..++.+. .++.|.+||..+... ...+....     .....+++  ++..|.++.  .++.|.++|..+.+.     
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-----  164 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-----  164 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-----
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-----
Confidence            333555555 899999999987653 33333222     15567777  445555554  489999999988754     


Q ss_pred             eeeeecccccceeEEEecCCCCcEEEEeCCCC--------CCeEEEEECCCCCeeEEEeC--CCCeEEEEEcCCCCeEEE
Q 012679          307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG--------DRCIKFWNTHTGACLNSVDT--GSQVCALLWNKNERELLS  376 (458)
Q Consensus       307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~--------d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~  376 (458)
                       +..+.. ......++++|++. +++++.+..        .+.|.++|..+++....+..  +.....++++|+++.+++
T Consensus       165 -~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          165 -VDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             -EEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             -EEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence             344433 23456889999765 555544211        27899999999998877765  447899999999999988


Q ss_pred             EecCCCCcEEEEeCCCceeeEE--EeCCCCcEEEEEEcC-CCCEEEEE----eCCCcEEEEecCCCCccc
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAE--LSGHTSRVLFMAQSP-DGCTVASA----AADETLRFWNVFGAPQVI  439 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~--~~~h~~~V~~l~~sp-dg~~l~s~----s~Dg~i~iW~~~~~~~~~  439 (458)
                      +.    +.|.+||..+++....  +..+......++++| ++.+.++.    ..++.|.+||.. ++.+.
T Consensus       242 ~~----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          242 IN----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID  306 (328)
T ss_dssp             ES----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred             Ec----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence            53    2899999988775321  222245688999999 56666666    578999999987 55443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=3.7e-13  Score=136.39  Aligned_cols=287  Identities=14%  Similarity=0.078  Sum_probs=200.1

Q ss_pred             ceeeccC--CCeEEEEcCCEEEEEECC--CCCeeeEEEecCCCCCEEEEEEc----CCCCEEEEEec-CCeEEEEeCCCc
Q 012679          145 NLLDWGS--SNVLAIALGSTVYLWDAS--DGTTSELVTVDDENGPVTSVNWA----PDGRHIAIGLN-NCQVQLWDSTAN  215 (458)
Q Consensus       145 ~~~~~~~--~~~la~~~d~~v~iwd~~--~~~~~~~~~~~~h~~~V~~v~~s----~~g~~la~g~~-dg~v~iwd~~~~  215 (458)
                      ..+.+++  ..+++++.++.|.+||+.  +++.  +.++.. ......++|+    |||++++++.. ++.|.|+|..+.
T Consensus       200 ~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          200 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             cceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            3455555  457777788999999996  6655  455554 3347899999    69999888765 589999999999


Q ss_pred             eeeEEecCC---------C-cccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679          216 RQLRTLRGG---------H-RSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL  282 (458)
Q Consensus       216 ~~~~~~~~~---------~-~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  282 (458)
                      +.+..+...         | ..++..+..+   +..++....+|.|.++|......+............++.|+|++++|
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence            988877631         1 1256777663   35666667789999999876543322222334456788999999998


Q ss_pred             EEEE-CCCcEEEEeCCCCCCCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC-------
Q 012679          283 ASGG-NDNLLHIWDRSMASSNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT-------  349 (458)
Q Consensus       283 ~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~-------  349 (458)
                      +++. .++.|.++|..+++.      +..+.     .|.+.-..+ ++|++..+++++. -.++.|.++|..+       
T Consensus       357 ~va~~~sn~V~ViD~~t~kl------~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~  428 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKL------VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNA  428 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEE------EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTB
T ss_pred             EEEeCCCCeEEEEECCCCcE------EEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCcccc
Confidence            7766 578999999987754      22222     243222122 5787677777653 1468999999988       


Q ss_pred             CCeeEEEeCCC-CeEEEEEcCCCCeEEEEecCC-----CCcEEEEeCCCc-----eee-EEEe--------CCCCcEEEE
Q 012679          350 GACLNSVDTGS-QVCALLWNKNERELLSSHGFT-----QNQLTLWKYPSM-----VKM-AELS--------GHTSRVLFM  409 (458)
Q Consensus       350 ~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~g~~-----d~~i~iwd~~~~-----~~~-~~~~--------~h~~~V~~l  409 (458)
                      .+.++++...+ .-..+..+|+++++.+.....     .+.|.++|..+.     ... ..+.        .-..++.++
T Consensus       429 ~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (567)
T 1qks_A          429 WKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQG  508 (567)
T ss_dssp             TSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEE
T ss_pred             CEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEee
Confidence            67888887653 335678899999999865211     359999999877     221 2231        124578999


Q ss_pred             EEcCCCCEEEEEe-----CCCcEEEEecCCCCcccccC
Q 012679          410 AQSPDGCTVASAA-----ADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       410 ~~spdg~~l~s~s-----~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      .|+|+|+.+..+.     .++.|.|+|..+.+......
T Consensus       509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            9999999877663     37999999998877654433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.65  E-value=2e-13  Score=125.92  Aligned_cols=211  Identities=10%  Similarity=-0.018  Sum_probs=162.2

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCc-ccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc-ccc
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR-SRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGH-NQE  269 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h-~~~  269 (458)
                      .+++|++++.++.|++||.++++.+.++.. +. ..+.++.+  ++++|+  +.++.|..||. +++. +..+..+ ...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL-EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC-CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC-CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCcc
Confidence            467899999999999999999999999986 43 46677777  577777  45778999998 5553 4555543 357


Q ss_pred             eEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeec------ccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679          270 VCGLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLE------EHTSAVKAIAWCPFQSNLLATGGGGGDRCI  342 (458)
Q Consensus       270 v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i  342 (458)
                      +.++.+.++|+++++.+. ++.|..+|. .++.      +..+.      .+......+++.+++. ++++..  .++.|
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~------l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~--~~~~v  148 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEV------LSKTEFETGIERPHAQFRQINKNKKGN-YLVPLF--ATSEV  148 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCE------EEEEEECCSCSSGGGSCSCCEECTTSC-EEEEET--TTTEE
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCE------EEEEeccCCCCcccccccCceECCCCC-EEEEec--CCCEE
Confidence            889999999999999887 778888875 3332      22221      2223455677888765 455554  78999


Q ss_pred             EEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC------CcEEEEEEcCCCC
Q 012679          343 KFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT------SRVLFMAQSPDGC  416 (458)
Q Consensus       343 ~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~------~~V~~l~~spdg~  416 (458)
                      ..||.. |+.+.++.....+.++...++++.+++  +..++.|..+|..+++.+.++..+.      ..+..++..++|.
T Consensus       149 ~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             EEECTT-SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred             EEECCC-CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence            999998 999999988777888889999999988  4467789999999999999986442      2378899999999


Q ss_pred             EEEEEe
Q 012679          417 TVASAA  422 (458)
Q Consensus       417 ~l~s~s  422 (458)
                      ++++..
T Consensus       226 i~v~~~  231 (276)
T 3no2_A          226 LYICNW  231 (276)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            988774

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=5.5e-13  Score=126.40  Aligned_cols=216  Identities=12%  Similarity=0.113  Sum_probs=156.3

Q ss_pred             EEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-eeEEec--------CCCcccEEE
Q 012679          162 TVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLR--------GGHRSRVGS  231 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~~~~~~--------~~~~~~v~~  231 (458)
                      .|++||..++++.  ..+. ++-.....++++++|+++++...++.|++||..... .+..+.        ..+......
T Consensus        70 ~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           70 TILVIDPNNAEIL--QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CEEEECTTTCCEE--EEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             cEEEEECCCCeEE--eccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            7999999988873  3332 344679999999999988888888999999976542 455553        124557889


Q ss_pred             EEeC---CCeEEEEe-CCCcEEEEEccCCCeeEEEEcc----------cccceEeEEEcCC-CCEEEEEECCCcEEEEeC
Q 012679          232 LAWN---NHILTTGG-MDGLIINNDVRVRDHIVETYRG----------HNQEVCGLKWSAS-GQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       232 l~~~---~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~----------h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~  296 (458)
                      ++++   +.++++.+ .++.|.+||.. +. .+..+..          +-....+++++|+ +.++++...++.|++||.
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~  225 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT  225 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence            9995   45666665 68999999953 33 3444432          2234889999998 777777778899999998


Q ss_pred             CCCCCCCcceeeeee--cccccceeEEEecCCCCcEEEEeC-----CCCCCeEEEEECCCCCeeEEEe----CCCCeEEE
Q 012679          297 SMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLATGG-----GGGDRCIKFWNTHTGACLNSVD----TGSQVCAL  365 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~s~~-----g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~  365 (458)
                      .+++.      +..+  ..+...+.+++++|  ..++++.+     ...+..|++||..+++.+..+.    ....+..+
T Consensus       226 ~~G~~------~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i  297 (329)
T 3fvz_A          226 DTKEF------VREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI  297 (329)
T ss_dssp             TTCCE------EEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE
T ss_pred             CCCcE------EEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE
Confidence            86554      4444  34566788999999  34444332     1245689999999999998874    23458999


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      +++++|..+++  ...++.|++|++.
T Consensus       298 a~~~dG~lyva--d~~~~~I~~~~~~  321 (329)
T 3fvz_A          298 VASEDGTVYIG--DAHTNTVWKFTLT  321 (329)
T ss_dssp             EECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred             EECCCCCEEEE--ECCCCEEEEEeCC
Confidence            99999955544  4468899999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=6.8e-13  Score=124.39  Aligned_cols=239  Identities=6%  Similarity=0.042  Sum_probs=167.2

Q ss_pred             CCCCEEEEEEcCCCCEEEE-------EecCCeEEEEeCCCceeeEEec---CCCcccEEEEEeCC--CeEEEEeCCCcEE
Q 012679          182 ENGPVTSVNWAPDGRHIAI-------GLNNCQVQLWDSTANRQLRTLR---GGHRSRVGSLAWNN--HILTTGGMDGLII  249 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~-------g~~dg~v~iwd~~~~~~~~~~~---~~~~~~v~~l~~~~--~~l~sg~~dg~i~  249 (458)
                      .-....+++|+++|.++++       +..++.|.+||..+++......   .++...+.+++++.  ..|..++..+.|.
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~   95 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence            3456789999999987777       5778899999988877543222   11446688899953  4555565555799


Q ss_pred             EEEccCCCeeEEE-Ec----ccccceEeEEEcCCCCEEEEEECC---------------CcEEEEeCCCCCCCCcceeee
Q 012679          250 NNDVRVRDHIVET-YR----GHNQEVCGLKWSASGQQLASGGND---------------NLLHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       250 vwd~~~~~~~~~~-~~----~h~~~v~~l~~spd~~~l~sg~~d---------------g~i~iwd~~~~~~~~~~~~~~  309 (458)
                      +||.. +.. ... ..    .....+.+++++++|+++++...+               +.|..||.. +.       ..
T Consensus        96 ~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-------~~  165 (314)
T 1pjx_A           96 VVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-------MI  165 (314)
T ss_dssp             EEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-------EE
T ss_pred             EEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-------EE
Confidence            99987 442 221 11    112358899999999988777654               567777754 22       22


Q ss_pred             eecccccceeEEEec----CCCCcEEEEeCCCCCCeEEEEECC-CCCe-----eEEEeCC--CCeEEEEEcCCCCeEEEE
Q 012679          310 RLEEHTSAVKAIAWC----PFQSNLLATGGGGGDRCIKFWNTH-TGAC-----LNSVDTG--SQVCALLWNKNERELLSS  377 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~----p~~~~ll~s~~g~~d~~i~lwd~~-~~~~-----~~~~~~~--~~v~~~~~s~~~~~l~~~  377 (458)
                      .+..+......++|+    |++..++++..  .++.|.+||.. +++.     ...+...  ..+..++++++|+.+++.
T Consensus       166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EeccCCCCcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            222333456789999    98777777765  67899999986 4442     2222222  457889999999877774


Q ss_pred             ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEecCC
Q 012679          378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNVFG  434 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iW~~~~  434 (458)
                      .  .++.|.+||..+++.+..+..+...+.+++++|+|+.| ++...++.|..|++..
T Consensus       244 ~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             c--CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            3  57899999998788777777777889999999999955 4555678899999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.62  E-value=9.8e-14  Score=131.53  Aligned_cols=236  Identities=8%  Similarity=0.068  Sum_probs=168.6

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      ..|.++.|++++..++....++.++.|   .++....+.. +...+.+++|+  +.+++++..++.|.+||..++.. ..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~   80 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KR   80 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EE
Confidence            457788899988877777788889999   3455666665 66677899994  67777888899999999987653 22


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCCcEEEEeC
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ....+...+.+++++++|+++++...+    +.|.+||......      ...+  ..+...+..++++|++. ++++..
T Consensus        81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~  153 (333)
T 2dg1_A           81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL------QDIIEDLSTAYCIDDMVFDSKGG-FYFTDF  153 (333)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC------EEEECSSSSCCCEEEEEECTTSC-EEEEEC
T ss_pred             EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE------EEEEccCccCCcccceEECCCCC-EEEEec
Confidence            233456789999999999988877766    6899999877654      1111  12445788999999765 554442


Q ss_pred             C----CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC-ceeeE--------EEeCC
Q 012679          336 G----GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS-MVKMA--------ELSGH  402 (458)
Q Consensus       336 g----~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~-~~~~~--------~~~~h  402 (458)
                      +    ...+.|..+|..+++..........+..++|+|+++.++++. ..++.|.+|++.+ +..+.        .+.++
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-TTANRLHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-CCCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence            1    013567777776666544434345678999999999776653 3568999999863 32221        12222


Q ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          403 TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       403 ~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                       ..+..++++++|+++++...++.|.+|+..
T Consensus       233 -~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          233 -EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             -SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             -CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence             467889999999988888888999999984

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=2.1e-11  Score=113.16  Aligned_cols=271  Identities=11%  Similarity=-0.055  Sum_probs=181.7

Q ss_pred             ccceeeccC-CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGS-SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      ....+..++ ++++.+. .++.|.+||.. ++... ..+..+...+.++++.++|++.++...++.|..||.. ++....
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~   97 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY   97 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence            344556655 5566665 46899999988 66543 3344445679999999999877776667899999987 554322


Q ss_pred             ecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          221 LRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       221 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      ........+.+++++  +.++++...++.|..+|.. +......+......+.++++.++++++++...++.|..||. .
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            211134678888885  5666666668899999987 44322223334567899999999997776666789999997 3


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-e-CCCCeEEEEEcCCCCeEEE
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-D-TGSQVCALLWNKNERELLS  376 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~  376 (458)
                      +...     ......+...+..+++.+++ .++++..  ..+.|.+||. +++..... . ....+.+++++++++..++
T Consensus       176 g~~~-----~~~~~~~~~~~~~i~~d~~g-~l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          176 GKLE-----EYPLPTNAAAPVGITSGNDG-ALWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             CCEE-----EEECSSTTCCEEEEEECTTS-SEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             CcEE-----EeeCCCCCCCcceEEECCCC-CEEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence            3320     11222344568899999975 5666544  5678999998 55544432 2 2456889999999986665


Q ss_pred             EecCCCCcEEEEeCCCceee-EEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          377 SHGFTQNQLTLWKYPSMVKM-AELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      .  ..++.|..|+. +++.. ..+......+.+++++++|.+.++.. . .|..++.
T Consensus       247 ~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          247 E--WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             E--TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             c--cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            3  35789999998 44332 22333446688999999998766554 4 5655554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.61  E-value=6.5e-13  Score=122.52  Aligned_cols=208  Identities=10%  Similarity=0.044  Sum_probs=153.9

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDEN-GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~-~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      .+++++.++.|++||.++|+.  +.++..+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+..+....+.+
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             EEEeeCCCCEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            355556789999999999988  66666554 4689999999999888  45778999998 899999988633456777


Q ss_pred             EEe--CCCeEEEEeC-CCcEEEEEccCCCeeEEEEc------ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679          232 LAW--NNHILTTGGM-DGLIINNDVRVRDHIVETYR------GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN  302 (458)
Q Consensus       232 l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~------~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~  302 (458)
                      +.+  +++++++.+. ++.|..+|.. ++. +..+.      .+......+.+.++|+++++...++.|..||.. ++. 
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-  157 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-  157 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE-
Confidence            777  6888888877 7778777763 332 33332      222345567889999999999999999999987 654 


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-------CCeEEEEEcCCCCeEE
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-------SQVCALLWNKNERELL  375 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~  375 (458)
                           +.++..+ ..+.++...+++. +++++.  .++.|..+|..+|+.+..+...       ..+..+...+++..++
T Consensus       158 -----~w~~~~~-~~~~~~~~~~~g~-~~v~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v  228 (276)
T 3no2_A          158 -----LNSVKLS-GTPFSSAFLDNGD-CLVACG--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI  228 (276)
T ss_dssp             -----EEEEECS-SCCCEEEECTTSC-EEEECB--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred             -----EEEEECC-CCccceeEcCCCC-EEEEeC--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence                 4455433 3456677888655 444443  5678999999999999988632       1267888888888887


Q ss_pred             EEe
Q 012679          376 SSH  378 (458)
Q Consensus       376 ~~~  378 (458)
                      +..
T Consensus       229 ~~~  231 (276)
T 3no2_A          229 CNW  231 (276)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=9.4e-12  Score=119.85  Aligned_cols=263  Identities=12%  Similarity=-0.018  Sum_probs=176.4

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCC------
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGH------  225 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~------  225 (458)
                      .|.+||..+++.  +.++.....+  .++++|||++|+++.          .++.|.+||..+.+.+..+..+.      
T Consensus        48 ~v~v~D~~t~~~--~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~  123 (373)
T 2mad_H           48 QQWVLDAGSGSI--LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV  123 (373)
T ss_pred             EEEEEECCCCeE--EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence            899999999886  4555543343  999999999999886          36789999999988888775420      


Q ss_pred             cccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEE-EcccccceEeEEEcCCC-CEEEEEECCCcEEEEeCCCC
Q 012679          226 RSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASG-QQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       226 ~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd~-~~l~sg~~dg~i~iwd~~~~  299 (458)
                      ......+.|  ++++|+++..  ++.|.++| .+++. +.. +.. ..   ++.+.|++ +.+++.+.||.+.++|. .+
T Consensus       124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g  196 (373)
T 2mad_H          124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG  196 (373)
T ss_pred             CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence            112335566  6788888774  57899999 77654 444 322 11   24445554 45667778999999998 55


Q ss_pred             CCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeC-----------CCCeEEE
Q 012679          300 SSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDT-----------GSQVCAL  365 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~-----------~~~v~~~  365 (458)
                      ...........+ ....+ .....+.+++..++++.   ..+.+.+.|+.++.  .+..+..           ......+
T Consensus       197 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~  272 (373)
T 2mad_H          197 GAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             cEEEEEeccccc-cCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence            431000000001 11111 12345666666655554   56789999987653  2233321           1223447


Q ss_pred             EEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 012679          366 LWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGA  435 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~  435 (458)
                      .++++++.++++...        ..+.|.++|..+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+.
T Consensus       273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            889999988886421        246899999999999998863 33578999999999 777777 5899999999988


Q ss_pred             Ccccc
Q 012679          436 PQVIS  440 (458)
Q Consensus       436 ~~~~~  440 (458)
                      +.+..
T Consensus       352 ~vv~~  356 (373)
T 2mad_H          352 DQDQS  356 (373)
T ss_pred             CEEee
Confidence            87755

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=3.6e-13  Score=127.63  Aligned_cols=247  Identities=6%  Similarity=-0.043  Sum_probs=172.6

Q ss_pred             eeeccCCCeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecC
Q 012679          146 LLDWGSSNVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       146 ~~~~~~~~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .+.+..+.++++.. ++.|.+||..+++.  +.++.. ......+++++++ .+.++. .++.|.+||..+++....+..
T Consensus        48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~--~~~i~~-~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           48 SMVIRDGIGWIVVNNSHVIFAIDINTFKE--VGRITG-FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             EEEEETTEEEEEEGGGTEEEEEETTTCCE--EEEEEC-CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCEEEEEEcCCCEEEEEECcccEE--EEEcCC-CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            34445566666665 68999999999987  444443 4678999999998 455555 789999999999998877764


Q ss_pred             CCc----ccEEEEEeCCCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC---------
Q 012679          224 GHR----SRVGSLAWNNHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND---------  288 (458)
Q Consensus       224 ~~~----~~v~~l~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d---------  288 (458)
                      +..    .....+++++..|+++.  .++.|.++|+.+... +..+.. ......+.++|+|++++++..+         
T Consensus       124 g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             TTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred             CCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccC
Confidence            221    14455666666666665  488999999987654 344433 2345789999999977776654         


Q ss_pred             -CcEEEEeCCCCCCCCcceeeeeeccc-ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE--EeC-CCCeE
Q 012679          289 -NLLHIWDRSMASSNSVTQWLHRLEEH-TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS--VDT-GSQVC  363 (458)
Q Consensus       289 -g~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~--~~~-~~~v~  363 (458)
                       +.|.++|..+.+.      ...+... ......++++|++..++++.     +.|.+||..+++....  +.. .....
T Consensus       202 ~~~v~~id~~t~~v------~~~~~~~~g~~p~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~  270 (328)
T 3dsm_A          202 APSLYRIDAETFTV------EKQFKFKLGDWPSEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYY  270 (328)
T ss_dssp             CCEEEEEETTTTEE------EEEEECCTTCCCEEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEE
T ss_pred             CceEEEEECCCCeE------EEEEecCCCCCceeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceE
Confidence             7899999887654      3333321 23678999999888777753     2899999998876421  222 35688


Q ss_pred             EEEEcCCCCeEEEEec---CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          364 ALLWNKNERELLSSHG---FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g---~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      .++++|++..++++..   ..++.|.+||.. ++.+.++..- .....++|
T Consensus       271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~  319 (328)
T 3dsm_A          271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW  319 (328)
T ss_dssp             EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred             EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence            9999997666666531   357899999998 8888877532 22345554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=9e-13  Score=138.32  Aligned_cols=255  Identities=11%  Similarity=0.035  Sum_probs=172.3

Q ss_pred             CceeeeCCCCCCc--cccceeeccCC-CeEE-EEcC-C----EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679          129 SERTLDAPDLVDD--YYLNLLDWGSS-NVLA-IALG-S----TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA  199 (458)
Q Consensus       129 ~~~~l~~~~~~~d--~~~~~~~~~~~-~~la-~~~d-~----~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la  199 (458)
                      ++.+++...+..+  +.+..+.|+++ ..++ +..+ |    .|++||+.+++.... .+..  ..+..++|+|||+.|+
T Consensus       110 ~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~--~~~~~~~wspDg~~l~  186 (710)
T 2xdw_A          110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLER--VKFSCMAWTHDGKGMF  186 (710)
T ss_dssp             CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEE--ECSCCEEECTTSSEEE
T ss_pred             cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccC--cccceEEEEeCCCEEE
Confidence            4455555444433  35778899984 4444 3332 2    899999999987443 2222  2267899999999999


Q ss_pred             EEecCCe----------------EEEEeCCCceee--EEecC-CCcccEEEEEe--CCCeEEEEeC-----CCcEEEEEc
Q 012679          200 IGLNNCQ----------------VQLWDSTANRQL--RTLRG-GHRSRVGSLAW--NNHILTTGGM-----DGLIINNDV  253 (458)
Q Consensus       200 ~g~~dg~----------------v~iwd~~~~~~~--~~~~~-~~~~~v~~l~~--~~~~l~sg~~-----dg~i~vwd~  253 (458)
                      .++.++.                |++|++.++...  ..+.. .|...+..+.|  ++++|+.++.     +..|++||+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~  266 (710)
T 2xdw_A          187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDL  266 (710)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEG
T ss_pred             EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEEC
Confidence            9988766                999999887632  22222 14556778888  5777777654     568999999


Q ss_pred             cC------CCeeEEEEcccccceEeEEEcCCCCEEEEEECCC----cEEEEeCCCCCCCCcceeeeeeccccc--ceeEE
Q 012679          254 RV------RDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN----LLHIWDRSMASSNSVTQWLHRLEEHTS--AVKAI  321 (458)
Q Consensus       254 ~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l  321 (458)
                      .+      +......+..+...+.. .|+++|+.|+..++++    .|.+||+..+...   . ...+..|..  .+..+
T Consensus       267 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~-~~~l~~~~~~~~~~~~  341 (710)
T 2xdw_A          267 QQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---K-WKVLVPEHEKDVLEWV  341 (710)
T ss_dssp             GGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---G-CEEEECCCSSCEEEEE
T ss_pred             cccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---c-ceeccCCCCCCeEEEE
Confidence            86      43224555556555554 4889999888777643    5999998776321   0 233444433  67889


Q ss_pred             EecCCCCcEEEEeCCCCCC--eEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEe--cCCCCcEEEEeCCCce
Q 012679          322 AWCPFQSNLLATGGGGGDR--CIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSH--GFTQNQLTLWKYPSMV  394 (458)
Q Consensus       322 ~~~p~~~~ll~s~~g~~d~--~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~--g~~d~~i~iwd~~~~~  394 (458)
                      +|++ +..++++..  .|+  .|.+||+.+|+.+..+..+ ..+..+.++|++..++.+.  ....+.|.+||+.+++
T Consensus       342 ~~~~-~~~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          342 ACVR-SNFLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEET-TTEEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEc-CCEEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            9986 466777665  666  4677788788877777553 4577889999998776542  3346789999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=1.5e-11  Score=114.09  Aligned_cols=240  Identities=9%  Similarity=-0.032  Sum_probs=168.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~  256 (458)
                      +..+...+.++++.++|++.++...++.|.+||.. ++........+...+.+++++  +.++++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            44455679999999999977766667899999988 554332212245678899984  5666666668899999986 3


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      ......+......+.++++.++++++++...++.|.+||. .+...     ......+...+..+++.+++ .++++.. 
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-----~~~~~~~~~~~~~i~~~~~g-~l~v~~~-  159 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-----EYELPNKGSYPSFITLGSDN-ALWFTEN-  159 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-----EEECSSTTCCEEEEEECTTS-CEEEEET-
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-----EecCCCCCCCCceEEEcCCC-CEEEEeC-
Confidence            3211222234567899999999998888777889999997 33320     11222344568899999976 5666554 


Q ss_pred             CCCCeEEEEECCCCCeeEE-Ee-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEcC
Q 012679          337 GGDRCIKFWNTHTGACLNS-VD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQSP  413 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~sp  413 (458)
                       .++.|..||. +++.... .. ....+..+++++++..+++  ...++.|.+|+. +++... .+..+...+.++++++
T Consensus       160 -~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  234 (299)
T 2z2n_A          160 -QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA  234 (299)
T ss_dssp             -TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred             -CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC
Confidence             5789999999 7765543 22 2346889999999886665  335788999998 655432 2333456789999999


Q ss_pred             CCCEEEEEeCCCcEEEEecC
Q 012679          414 DGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +|+++++...++.|..|+..
T Consensus       235 ~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          235 GIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             TTCEEEEETTTTEEEEEETT
T ss_pred             CCCEEEeccCCceEEEECCC
Confidence            99977766678899999983

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.58  E-value=1.3e-12  Score=119.79  Aligned_cols=237  Identities=10%  Similarity=-0.037  Sum_probs=158.1

Q ss_pred             ccceeeccC-CCeEE-E-EcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          143 YLNLLDWGS-SNVLA-I-ALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       143 ~~~~~~~~~-~~~la-~-~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ....+.+++ +++++ + ..++.|++||..++...  .....+...+.+++++++|+++++.. ++.|.+||...... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-T  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E--ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc--eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-e
Confidence            455666765 45555 4 45789999997665432  11122335688999999999555554 88999999876543 3


Q ss_pred             EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.......+..++++  +.++++...++.|.+|+..+.... .........+.+++++++|+++++...++.|.+||..
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  179 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  179 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence            3332234568889885  566777677889999976544321 1122333467899999999977777778899999987


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLS  376 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~  376 (458)
                      ....      ......+...+..+++++++ .++++..  .++.|.+||............ ...+.+++++++++.+++
T Consensus       180 ~~~~------~~~~~~~~~~p~~i~~d~~g-~l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          180 SNNQ------VVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             TCCE------EECCCSSCCSEEEEEECTTC-CEEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE
T ss_pred             CCce------EeecccCCCCceEEEECCCC-CEEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE
Confidence            6543      22222233567899999976 6777654  678999999876554332222 256899999999985555


Q ss_pred             EecCCCCcEEEEeCCCcee
Q 012679          377 SHGFTQNQLTLWKYPSMVK  395 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~  395 (458)
                        ...++.|.++++...+.
T Consensus       251 --~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          251 --DRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             --EGGGTEEEEECCCGGGS
T ss_pred             --ECCCCEEEEEcCCCccc
Confidence              34688999999876543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=4.9e-13  Score=127.30  Aligned_cols=228  Identities=11%  Similarity=0.131  Sum_probs=148.6

Q ss_pred             cceeeccCC--CeEEEEcC---C--EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC------------
Q 012679          144 LNLLDWGSS--NVLAIALG---S--TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN------------  204 (458)
Q Consensus       144 ~~~~~~~~~--~~la~~~d---~--~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d------------  204 (458)
                      +..+.|+++  .++.++.+   +  .|++|++.+++...+...   .. +..++|+|||+.|+.++.+            
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            456788873  35555543   2  489999998876554443   23 9999999999999988743            


Q ss_pred             ---------------CeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCC-------cEEEEEccCCCeeE
Q 012679          205 ---------------CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG-------LIINNDVRVRDHIV  260 (458)
Q Consensus       205 ---------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg-------~i~vwd~~~~~~~~  260 (458)
                                     ..|.+||+.+++.+..+..  . .+..+.|+  + +++++..++       ...+|.+. ... .
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~  210 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-E  210 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-E
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-e
Confidence                           5799999998887455553  2 67788884  5 666665542       34455444 333 2


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECC--------CcEEEEeCCCCCCCCcceeeeeecccccceeE-EEecCCCCcEE
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGND--------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA-IAWCPFQSNLL  331 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~ll  331 (458)
                      ..+..+ ..+..+  +|||++|+.++.+        ..|.+||  .+..      ......+...+.. +.|+ ++  ++
T Consensus       211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~------~~l~~~~~~~~~~~~~~s-dg--~~  276 (347)
T 2gop_A          211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV------MGILDEVDRGVGQAKIKD-GK--VY  276 (347)
T ss_dssp             EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE------EESSTTCCSEEEEEEEET-TE--EE
T ss_pred             EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce------EeccccCCcccCCccEEc-Cc--EE
Confidence            333334 445444  9999999888754        3688888  3322      2333455677886 8999 65  66


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCc-EEEEeCCCceeeEEEeCCCC
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQ-LTLWKYPSMVKMAELSGHTS  404 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~-i~iwd~~~~~~~~~~~~h~~  404 (458)
                      ++++  .++.+++| +.+++..........+.++.|++  ..+++..  .++. ..||.+. ++ ...+..|..
T Consensus       277 ~~~~--~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~--~~~~~~~l~~~~-g~-~~~lt~~n~  341 (347)
T 2gop_A          277 FTLF--EEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKE--TATRLRELFTWD-GE-EKQLTDYND  341 (347)
T ss_dssp             EEEE--ETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEE--CSSSCCEEEEES-SS-EEECCCTTS
T ss_pred             EEEe--cCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEc--CCCChHHheEeC-Cc-EEEeccccH
Confidence            6665  78899999 87777655555566789999999  4444432  3333 2566555 43 444555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.57  E-value=4.1e-13  Score=141.61  Aligned_cols=265  Identities=12%  Similarity=0.052  Sum_probs=166.1

Q ss_pred             EEEEEECC---CCCeeeEEEe----cCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCceeeEEecCCCcccE
Q 012679          162 TVYLWDAS---DGTTSELVTV----DDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       162 ~v~iwd~~---~~~~~~~~~~----~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      .|++.+..   .++...+...    .+|...+..++|||||++||.+..+     ..|++||+.+++.+....  +...+
T Consensus       134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~  211 (741)
T 1yr2_A          134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKF  211 (741)
T ss_dssp             EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEES
T ss_pred             EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCcee
Confidence            44555554   4444333321    1233468899999999999988654     369999999998765422  22233


Q ss_pred             EEEEeCC-CeEEEEeCCCc--------------EEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCC--
Q 012679          230 GSLAWNN-HILTTGGMDGL--------------IINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDN--  289 (458)
Q Consensus       230 ~~l~~~~-~~l~sg~~dg~--------------i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg--  289 (458)
                      ..++|.+ +.|+.++.++.              |++|++.++..   ++.....+...+.++.|+|||++|+..+.++  
T Consensus       212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  291 (741)
T 1yr2_A          212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD  291 (741)
T ss_dssp             CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred             ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence            5788843 67777776554              88999876652   2222223344588999999999998877544  


Q ss_pred             ---cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCC--CeeEEEeCC-CCe
Q 012679          290 ---LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTG--ACLNSVDTG-SQV  362 (458)
Q Consensus       290 ---~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~--~~~~~~~~~-~~v  362 (458)
                         .|++||+.++...    ....+..+...+.... +|++..+++... +..++.|.+||+.++  .....+... ..+
T Consensus       292 ~~~~l~~~d~~~~~~~----~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l  366 (741)
T 1yr2_A          292 PVNTVHVARVTNGKIG----PVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNL  366 (741)
T ss_dssp             SCCEEEEEEEETTEEC----CCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEE
T ss_pred             CcceEEEEECCCCCCc----ccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeE
Confidence               8999998765110    0123334444444443 477887777653 123567999999885  333333333 235


Q ss_pred             EEEEEcCCCCeEEEEecCCCCcEEEEeCC-CceeeEEEeC-CCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEecCCCC
Q 012679          363 CALLWNKNERELLSSHGFTQNQLTLWKYP-SMVKMAELSG-HTSRVLFMAQSPDGCTVASA-A---ADETLRFWNVFGAP  436 (458)
Q Consensus       363 ~~~~~s~~~~~l~~~~g~~d~~i~iwd~~-~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~-s---~Dg~i~iW~~~~~~  436 (458)
                      ..+.|+ ++..+++  ...++..+||.+. ++.....+.. +.+.|..++++|++..|+.. +   ..++|++||+.+++
T Consensus       367 ~~~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          367 ESVGIA-GNRLFAS--YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEE-BTEEEEE--EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEE-CCEEEEE--EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            567776 3344444  3357766666543 4555666654 35678899999998766532 2   34789999997765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.56  E-value=2.1e-12  Score=123.65  Aligned_cols=277  Identities=14%  Similarity=0.086  Sum_probs=177.3

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCC---------eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeC
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGT---------TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDS  212 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~---------~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~  212 (458)
                      .++++++++ ..+++++....+.+|++++..         ........ +.. |+.++|  |+++|+++ .+|.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            588899987 567777777788889865432         22222333 455 999999  99999999 8899999999


Q ss_pred             CCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      .+......... |...+.++.+.+..+++++.||.|.+||+..+.. ..    +...|++++|||+|  ++.|..||.++
T Consensus       114 ~sl~~~~~~~~-~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSEFRTVTS-FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTCEEEEEE-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             hhhhccCccce-eecceeeEEecCCCEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            87776555555 7778999888655599999999999999987664 22    45689999999999  78899999999


Q ss_pred             EEeCCCCCCCCcceeeeee------c---ccccceeEEEecCCCCcEEEEeCCC---C-----CCeEEEEECCCCCee-E
Q 012679          293 IWDRSMASSNSVTQWLHRL------E---EHTSAVKAIAWCPFQSNLLATGGGG---G-----DRCIKFWNTHTGACL-N  354 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~------~---~h~~~v~~l~~~p~~~~ll~s~~g~---~-----d~~i~lwd~~~~~~~-~  354 (458)
                      +|+........    ...+      .   +|...|.+|.|.+++..+++-+...   .     +..+++.+...+... .
T Consensus       186 ~~~~~~~~~~~----k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~  261 (388)
T 1xip_A          186 SFAWRNGEMEK----QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQ  261 (388)
T ss_dssp             EEEEETTEEEE----EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEE
T ss_pred             EEcCCCccccc----cceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeE
Confidence            99876654200    1122      2   3778999999999766655543211   1     225666663222211 1


Q ss_pred             EE-e----CCC-----C---eEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE----------Ee---CCCCcEEE
Q 012679          355 SV-D----TGS-----Q---VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE----------LS---GHTSRVLF  408 (458)
Q Consensus       355 ~~-~----~~~-----~---v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~----------~~---~h~~~V~~  408 (458)
                      .+ +    .+.     .   ..--.|.|+.+.++.++....-.|-+++-.  +.+..          +.   +-.....+
T Consensus       262 ~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra~lPl~~~~~~Dt~piG  339 (388)
T 1xip_A          262 ETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERAVLPISEETDKDTNPIG  339 (388)
T ss_dssp             EESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCCBCCBCTTTCCBCCEEE
T ss_pred             ccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccceeccCCCCCCCCcceE
Confidence            12 1    011     1   122357777777766555455556666532  11111          11   11122444


Q ss_pred             EEEcC--C---------------CCEEEEEeCCCcEEEEecCCCCcc
Q 012679          409 MAQSP--D---------------GCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       409 l~~sp--d---------------g~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +++.-  .               -..|..-+.||.+..|.+....-+
T Consensus       340 ~alD~ss~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~~i  386 (388)
T 1xip_A          340 VAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVAAI  386 (388)
T ss_dssp             EEEECSCCC--------------CCEEEEEETTSEEEEEEEEC----
T ss_pred             EEEEcccCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchhhh
Confidence            44421  1               124677789999999998765543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=7.6e-12  Score=119.40  Aligned_cols=269  Identities=11%  Similarity=0.047  Sum_probs=178.3

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCC----
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGH----  225 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~----  225 (458)
                      ++.|.++|..+++.  +.++.....+ . ++++|||++|+++.          .++.|.+||..+++.+.++..+.    
T Consensus        58 ~~~V~ViD~~t~~v--~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~  133 (386)
T 3sjl_D           58 VTQQFVIDGEAGRV--IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  133 (386)
T ss_dssp             SEEEEEEETTTTEE--EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CCEEEEEECCCCeE--EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence            47999999999887  4444433444 4 99999999988875          35789999999999988876321    


Q ss_pred             --cccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC-
Q 012679          226 --RSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM-  298 (458)
Q Consensus       226 --~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~-  298 (458)
                        ......+.+  ++++++++..  ++.|.++|+.+.+. +..+.-. +  +...+....+.+++.+.||.+.+.++.. 
T Consensus       134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~  209 (386)
T 3sjl_D          134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTE  209 (386)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S--EEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred             ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C--cceeecCCCceeEEECCCCCEEEEECCCC
Confidence              112334555  6888887764  68999999998764 4444321 1  1233433556777888899999998876 


Q ss_pred             CCCCCcceeeeeecccccce-eEEEec-CCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeC-----------CCCeE
Q 012679          299 ASSNSVTQWLHRLEEHTSAV-KAIAWC-PFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDT-----------GSQVC  363 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v-~~l~~~-p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~-----------~~~v~  363 (458)
                      +... . .....+......+ ...+|. +++..++++    .++.|++.|+.++.  .+..+..           .....
T Consensus       210 g~v~-~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q  283 (386)
T 3sjl_D          210 GTPE-I-THTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ  283 (386)
T ss_dssp             SCCE-E-EECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS
T ss_pred             CeEE-E-eecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCcc
Confidence            3321 0 0000111111222 124554 554344433    57899999997764  3333320           12334


Q ss_pred             EEEEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEE-eCCCcEEEEecC
Q 012679          364 ALLWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASA-AADETLRFWNVF  433 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~-s~Dg~i~iW~~~  433 (458)
                      .+.++++++.++++...        ..+.|.++|..+++.+..+.- ...+..|++++|++ .|+++ ..++.|.++|..
T Consensus       284 ~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          284 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            57779999999986531        135799999999999988863 23688999999997 66664 458999999999


Q ss_pred             CCCcccccCC
Q 012679          434 GAPQVISKSA  443 (458)
Q Consensus       434 ~~~~~~~~~~  443 (458)
                      +.+.+.+...
T Consensus       363 t~k~~~~i~~  372 (386)
T 3sjl_D          363 SGEELRSVNQ  372 (386)
T ss_dssp             TCCEEEEECC
T ss_pred             CCcEEEEecC
Confidence            8887766543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=6.7e-12  Score=116.82  Aligned_cols=234  Identities=10%  Similarity=0.024  Sum_probs=158.2

Q ss_pred             cceeeccC-CC-eE-EEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          144 LNLLDWGS-SN-VL-AIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~-~~-~l-a~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      ...+.|++ ++ ++ +...++.|+.||..++ .   ..+..+...+.+++++++|+++++...++.|.+||..+++....
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~  105 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI  105 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence            45677876 44 44 4456789999999887 3   23334567799999999999877776778999999988775443


Q ss_pred             ecC---CCcccEEEEEeC--CCeEEE----Ee-------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC
Q 012679          221 LRG---GHRSRVGSLAWN--NHILTT----GG-------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS  278 (458)
Q Consensus       221 ~~~---~~~~~v~~l~~~--~~~l~s----g~-------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  278 (458)
                      ...   .....+..++++  +.++++    |+             ..+.|..++..  .. ...+..+.....+++|+|+
T Consensus       106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEECCCSSEEEEEECTT
T ss_pred             eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC-EEEeecCCCCCccEEECCC
Confidence            321   112345667774  677776    33             13456666654  22 3444556677889999999


Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679          279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       279 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      ++.|++.+.++.|.+||+.......  .....+..+...+..+++++++. ++++.    ++.|.+||.. ++.+..+..
T Consensus       183 g~~lv~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~~  254 (296)
T 3e5z_A          183 GNLLVSDTGDNATHRYCLNARGETE--YQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVLT  254 (296)
T ss_dssp             SCEEEEETTTTEEEEEEECSSSCEE--EEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEEC
T ss_pred             CCEEEEeCCCCeEEEEEECCCCcCc--CCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEEC
Confidence            9999777778999999987321100  00112233556678899999875 55443    5789999986 788887776


Q ss_pred             CCCeEEEEE-cCCCCeEEEEecCCCCcEEEEeCCCcee
Q 012679          359 GSQVCALLW-NKNERELLSSHGFTQNQLTLWKYPSMVK  395 (458)
Q Consensus       359 ~~~v~~~~~-s~~~~~l~~~~g~~d~~i~iwd~~~~~~  395 (458)
                      +..+.+++| .++++.|++++   .+.+.-++..+.+.
T Consensus       255 ~~~~~~~~f~~~d~~~L~v~t---~~~l~~~~~~~~~~  289 (296)
T 3e5z_A          255 PQTTSNLCFGGPEGRTLYMTV---STEFWSIETNVRGL  289 (296)
T ss_dssp             SSCCCEEEEESTTSCEEEEEE---TTEEEEEECSCCBC
T ss_pred             CCCceeEEEECCCCCEEEEEc---CCeEEEEEcccccc
Confidence            555899999 58888888864   34565666655443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=6.4e-11  Score=113.98  Aligned_cols=231  Identities=9%  Similarity=-0.026  Sum_probs=158.4

Q ss_pred             CCEEEEEECCCCCeeeEEEecC-----CCCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEE-ecCCCcccEEE
Q 012679          160 GSTVYLWDASDGTTSELVTVDD-----ENGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRT-LRGGHRSRVGS  231 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~-----h~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~-~~~~~~~~v~~  231 (458)
                      ++.|.+||..+.+......+.+     +......+.|+|||++|+++..  ++.|.++| .+++.+.. +..  ...+..
T Consensus        96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~~~~~  172 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PTCYHI  172 (373)
T ss_pred             CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--CceEEE
Confidence            6789999999877643333320     0123568999999999999874  47899999 99998888 653  233333


Q ss_pred             EEeCCCeEEEEeCCCcEEEEEccCCCeeEEEE----cccccc-eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679          232 LAWNNHILTTGGMDGLIINNDVRVRDHIVETY----RGHNQE-VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       232 l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~h~~~-v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~  306 (458)
                      ..+.+..+++.+.||.+.++|. ++.......    .....+ .....+.+++..++..+.++.+.+.|+.......   
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v---  248 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN---  248 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE---
Confidence            3445567788889999999999 665431111    011111 1234566766665555578899999987543210   


Q ss_pred             eeeeecc----------cccceeEEEecCCCCcEEEEeCCC-------CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679          307 WLHRLEE----------HTSAVKAIAWCPFQSNLLATGGGG-------GDRCIKFWNTHTGACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       307 ~~~~~~~----------h~~~v~~l~~~p~~~~ll~s~~g~-------~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~  369 (458)
                       +..+..          .......++++|++..++++....       .++.|.++|..+++.+..+..+.....+.|+|
T Consensus       249 -~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~  327 (373)
T 2mad_H          249 -KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ  327 (373)
T ss_pred             -eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECC
Confidence             111110          112234578899888887765310       23589999999999999999888899999999


Q ss_pred             CCC-eEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          370 NER-ELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       370 ~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      +++ .++++ ...++.|.+||..+++.+..+
T Consensus       328 Dg~~~l~v~-~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          328 DGGPDLYAL-SAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCeEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence            999 55553 445899999999999998874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=2.1e-11  Score=119.00  Aligned_cols=235  Identities=9%  Similarity=0.024  Sum_probs=164.6

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCC--cEEEEEccCCCee
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDG--LIINNDVRVRDHI  259 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg--~i~vwd~~~~~~~  259 (458)
                      .....|+|+++|+++++...++.|++||..++........ .... . ++|  ++..|+++..++  .|.+++...... 
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence            4688999999999777777778999999988776655543 2222 2 666  467888888766  788888876543 


Q ss_pred             EEEE----cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee--ecccccce--eEEEecCCCCcEE
Q 012679          260 VETY----RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--LEEHTSAV--KAIAWCPFQSNLL  331 (458)
Q Consensus       260 ~~~~----~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~~~h~~~v--~~l~~~p~~~~ll  331 (458)
                      ...+    ......+.+++++|++..|+.+..++.|+.||.......    ....  ..++...-  ..++|+|++..++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~----~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT----LIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE----EEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE----EEecccccCCCCCCccccEEEeCCCCEEE
Confidence            2222    224566789999996555666777889999998765421    0100  11222222  2899999778888


Q ss_pred             EEeCCCCCCeEEEEECCCCCeeEEEeCC---------------CCeEEEEEcCCCCeEEEEecC-CCCcEEEEeCCCcee
Q 012679          332 ATGGGGGDRCIKFWNTHTGACLNSVDTG---------------SQVCALLWNKNERELLSSHGF-TQNQLTLWKYPSMVK  395 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~~~~~~~~~~~~---------------~~v~~~~~s~~~~~l~~~~g~-~d~~i~iwd~~~~~~  395 (458)
                      ++..  .++.|+.|+.... ........               .....++++++++.+++  .. .++.|+.|+++++..
T Consensus       283 v~d~--~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          283 MSDQ--NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEET--TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE
T ss_pred             EEeC--CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE
Confidence            8866  7889999997643 22222221               34789999999995555  44 678999999887764


Q ss_pred             eEEEeCC---------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          396 MAELSGH---------------TSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       396 ~~~~~~h---------------~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                       .++.++               -.....++++++|.++++-..++.|+.+++
T Consensus       358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             444444               245889999999988888888888888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.52  E-value=1.6e-10  Score=107.07  Aligned_cols=239  Identities=9%  Similarity=-0.029  Sum_probs=167.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCC
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~  256 (458)
                      +......+.++++.++|+..++...++.|.+||.. ++........+...+.+++++  +.++++...++.|..+|.. +
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            33445678999999999977777678999999988 554432222244678889885  5666666667889999987 4


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      .............+.++++.++++++++...++.|..||.. +...     ...+......+..+++.+++. ++++.. 
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-----~~~~~~~~~~~~~i~~d~~g~-l~v~~~-  164 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-----EYDLPNKGSYPAFITLGSDNA-LWFTEN-  164 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-----EEECSSTTCCEEEEEECTTSS-EEEEET-
T ss_pred             CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-----EccCCCCCCCceeEEECCCCC-EEEEec-
Confidence            43222223344678999999999988887778899999976 3320     112223345688999999766 666554 


Q ss_pred             CCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEEEEc
Q 012679          337 GGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFMAQS  412 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l~~s  412 (458)
                       .++.|..+|. +++... +..   ...+..+++++++..+++.  ...+.|.+|+. +++... .+..+...+.+++++
T Consensus       165 -~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  238 (300)
T 2qc5_A          165 -QNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVE--IMGNKIGRITT-TGEISEYDIPTPNARPHAITAG  238 (300)
T ss_dssp             -TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             -CCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEc--cCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence             5788999998 666544 322   3468899999998766653  35678999998 444332 233445678999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecC
Q 012679          413 PDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       413 pdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++|++.++...++.|..|+..
T Consensus       239 ~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          239 KNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             STTCEEEEETTTTEEEEECTT
T ss_pred             CCCCEEEeccCCCeEEEECCC
Confidence            999977776677899999984

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=2.3e-11  Score=116.13  Aligned_cols=246  Identities=13%  Similarity=0.063  Sum_probs=169.0

Q ss_pred             CCEEEEEECCCCCeeeEEEecC--C---CCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEEecCCCcccEEEE
Q 012679          160 GSTVYLWDASDGTTSELVTVDD--E---NGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRTLRGGHRSRVGSL  232 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~--h---~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~l  232 (458)
                      ++.|.+||..+++......+..  +   ......++|+|||++|+++..  ++.|.++|+.+++.+.++...  ....-.
T Consensus       108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~~~~~  185 (386)
T 3sjl_D          108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DCYHIF  185 (386)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Ccceee
Confidence            5789999999998744444432  0   124567999999999998864  689999999999999998742  211111


Q ss_pred             EeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc----cceE-eEEEc-CCCCEEEEEECCCcEEEEeCCCCCCCCcce
Q 012679          233 AWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN----QEVC-GLKWS-ASGQQLASGGNDNLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       233 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~-~l~~s-pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~  306 (458)
                      ......+++.+.||.+.+.++............+.    ..+. ...|. ++|++++ .+.+|.|++.|........   
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v---  261 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF---  261 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE---
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee---
Confidence            22457788889999999999976433322221111    1221 24564 5775544 5668999999987654311   


Q ss_pred             eeeeec----------ccccceeEEEecCCCCcEEEEeC----CC---CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679          307 WLHRLE----------EHTSAVKAIAWCPFQSNLLATGG----GG---GDRCIKFWNTHTGACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       307 ~~~~~~----------~h~~~v~~l~~~p~~~~ll~s~~----g~---~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~  369 (458)
                       ...+.          ........++++++++.++++..    |+   ..+.|.+.|+.+++.+..+..+..+.++.+++
T Consensus       262 -~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~  340 (386)
T 3sjl_D          262 -LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ  340 (386)
T ss_dssp             -CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECS
T ss_pred             -ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECC
Confidence             11111          11234456888998888887642    00   12579999999999999999988999999999


Q ss_pred             CCC-eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679          370 NER-ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       370 ~~~-~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                      +++ .|+++.+ .++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus       341 D~~~~ly~tn~-~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          341 DEKPLLYALST-GDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             SSSCEEEEEET-TTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             CCCeEEEEEcC-CCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            997 6666543 6899999999999999988633 23345666665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=1e-10  Score=109.00  Aligned_cols=227  Identities=9%  Similarity=0.070  Sum_probs=154.1

Q ss_pred             CCCCEEEEEEcCCC-CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCe
Q 012679          182 ENGPVTSVNWAPDG-RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDH  258 (458)
Q Consensus       182 h~~~V~~v~~s~~g-~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~  258 (458)
                      +..-..+..|++++ .++++...++.|..||..+++. ..+.  ....+.+++++  +.+ +.+. ++.|.+||..++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT--MDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE--CSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe--CCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCcE
Confidence            34456789999954 4556666788999999988765 3343  45678899994  564 4444 56799999876543


Q ss_pred             eE-EEEc-c-cccceEeEEEcCCCCEEEEEECC---------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          259 IV-ETYR-G-HNQEVCGLKWSASGQQLASGGND---------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       259 ~~-~~~~-~-h~~~v~~l~~spd~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      .. .... + ....+..++++|+|+++++...+         ....||.+.....      ...+..+......++|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~------~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH------VKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC------EEEEEEEESBEEEEEECTT
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC------EEEEeeccccccceEEcCC
Confidence            11 1111 1 12457889999999977654321         2234554433222      2223333445678999999


Q ss_pred             CCcEEEEeCCCCCCeEEEEEC--CCCCee--EEE---e-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679          327 QSNLLATGGGGGDRCIKFWNT--HTGACL--NSV---D-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE  398 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~--~~~~~~--~~~---~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~  398 (458)
                      +..++++.+  .++.|..||+  .++...  ..+   . .......++++++|+..++..  ..+.|.+||..+++.+..
T Consensus       160 g~~lyv~~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~--~~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          160 HKIFYYIDS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY--NGGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             SCEEEEEEG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE--TTTEEEEECTTTCCEEEE
T ss_pred             CCEEEEecC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc--CCCEEEEEcCCCceEEEE
Confidence            888888765  6789999987  566542  112   1 124578899999998776643  567899999999999999


Q ss_pred             EeCCCCcEEEEEEc-CCCCEEEEEeC
Q 012679          399 LSGHTSRVLFMAQS-PDGCTVASAAA  423 (458)
Q Consensus       399 ~~~h~~~V~~l~~s-pdg~~l~s~s~  423 (458)
                      +..+...+++++|. |+++.|..++.
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEcC
Confidence            98887889999998 88887655543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=4e-12  Score=132.89  Aligned_cols=243  Identities=14%  Similarity=0.117  Sum_probs=162.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEec-----CCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCC---------
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLN-----NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDG---------  246 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~-----dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg---------  246 (458)
                      |...+..++|||||++||.+..     ...|++||+.+++.+....  +......++| +++.|+.++.+.         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWLGNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEETTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEeCCCEEEEEEecCccccccccc
Confidence            4556889999999999986543     2479999999998665422  1111234555 788888887774         


Q ss_pred             ----cEEEEEccCCCe---eEEEEcc-cccceEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679          247 ----LIINNDVRVRDH---IVETYRG-HNQEVCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQWLHRLEEH  314 (458)
Q Consensus       247 ----~i~vwd~~~~~~---~~~~~~~-h~~~v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~h  314 (458)
                          .|++|++.+...   .+..... |...+.++.|+|||++|+....    ++.|+++|+..+...     ...+..+
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-----~~~l~~~  279 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-----LLTVQGD  279 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-----CEEEECS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-----eEEEeCC
Confidence                399999877652   2222233 4556788999999998865442    358999998776421     3445555


Q ss_pred             ccceeEEEecCCCCcEEEEeCC-CCCCeEEEEECCCCCe---eEEEeCCCCeEEEEEcCCCCeEEEEecCCCC--cEEEE
Q 012679          315 TSAVKAIAWCPFQSNLLATGGG-GGDRCIKFWNTHTGAC---LNSVDTGSQVCALLWNKNERELLSSHGFTQN--QLTLW  388 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~g-~~d~~i~lwd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~--~i~iw  388 (458)
                      ....... |++++..+++.... ...+.|..+|+.++..   ...+.....+.  .|+++++.|+.... .++  .|.+|
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-~~g~~~l~~~  355 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-VDATARVEQF  355 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-ETTEEEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-ECCeeEEEEE
Confidence            5555554 66777777776541 1246899999988765   33333334443  89999998887542 343  68899


Q ss_pred             eCCCceeeEEEe-CCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCC
Q 012679          389 KYPSMVKMAELS-GHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGAP  436 (458)
Q Consensus       389 d~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~~  436 (458)
                      ++..+. ...+. ...+.+..+.+++++..|+....+    ++|..||+.+++
T Consensus       356 d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          356 DYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            987543 34443 344567788888888877655544    789999987654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=3e-11  Score=117.30  Aligned_cols=266  Identities=10%  Similarity=0.013  Sum_probs=178.7

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCC-----
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGH-----  225 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~-----  225 (458)
                      +.|.++|..+++..  .++.....+  .++++|||++|+++.          .++.|.++|..+++.+..+..+.     
T Consensus        99 ~~VsVID~~t~~vv--~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~  174 (426)
T 3c75_H           99 TQQFVIDGSTGRIL--GMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL  174 (426)
T ss_dssp             EEEEEEETTTTEEE--EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CeEEEEECCCCEEE--EEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence            69999999999884  444433444  899999999998886          36789999999999988875320     


Q ss_pred             -cccEEEEEe--CCCeEEEEeC--CCcEEEEEccCCCeeEEEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCCCC
Q 012679          226 -RSRVGSLAW--NNHILTTGGM--DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRSMA  299 (458)
Q Consensus       226 -~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~  299 (458)
                       ......+.+  ++++++++..  ++.|.+.|+.+.+. +..+.-..  .  ....|+ ...+++.+.||.+.+.+....
T Consensus       175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~  249 (426)
T 3c75_H          175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADG  249 (426)
T ss_dssp             BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred             cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence             112234455  6788888764  57899999998764 44443211  1  223343 355666777888888887443


Q ss_pred             CCCCcceeeeeecccccc-eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee--EEEeC-----------CCCeEEE
Q 012679          300 SSNSVTQWLHRLEEHTSA-VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL--NSVDT-----------GSQVCAL  365 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~-v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~--~~~~~-----------~~~v~~~  365 (458)
                      +.....  ...+.....+ ...+.+.+++..++++.   ..+.+.+.|...+...  ..+..           ......+
T Consensus       250 ~v~~~~--~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v  324 (426)
T 3c75_H          250 ETKVTN--TEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT  324 (426)
T ss_dssp             CCEEEE--CCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred             cEEEEe--eeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence            321000  0011111111 12456788888877765   5689999998765422  11111           1112236


Q ss_pred             EEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCC
Q 012679          366 LWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGA  435 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~  435 (458)
                      .++++++.++++...        ..+.|.++|..+.+.+.++... ....+++|+|||+ .++++. .++.|.++|+.+.
T Consensus       325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            899999988886431        2357999999999999988632 2578999999999 888888 5999999999998


Q ss_pred             Cccccc
Q 012679          436 PQVISK  441 (458)
Q Consensus       436 ~~~~~~  441 (458)
                      +.+.+.
T Consensus       404 kvv~tI  409 (426)
T 3c75_H          404 EELRSV  409 (426)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            877653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.45  E-value=7.8e-11  Score=110.22  Aligned_cols=239  Identities=10%  Similarity=0.090  Sum_probs=156.6

Q ss_pred             cceeeccC-CCeEEE--------EcCCEEEEEECCCCCeeeEEE--ecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEe
Q 012679          144 LNLLDWGS-SNVLAI--------ALGSTVYLWDASDGTTSELVT--VDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       144 ~~~~~~~~-~~~la~--------~~d~~v~iwd~~~~~~~~~~~--~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd  211 (458)
                      ...+.|++ ++++.+        ..++.|++||..+++...+..  ..++...+.+++++++ |+++ +++..+.|.+||
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d   98 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEEEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCEEEEe
Confidence            34567765 456666        678899999988888643321  0124467999999999 6544 444455799999


Q ss_pred             CCCceeeEE-ecC---CCcccEEEEEeC--CCeEEEEeCC---------------CcEEEEEccCCCeeEEEEcccccce
Q 012679          212 STANRQLRT-LRG---GHRSRVGSLAWN--NHILTTGGMD---------------GLIINNDVRVRDHIVETYRGHNQEV  270 (458)
Q Consensus       212 ~~~~~~~~~-~~~---~~~~~v~~l~~~--~~~l~sg~~d---------------g~i~vwd~~~~~~~~~~~~~h~~~v  270 (458)
                      .. ++.... ...   .....+.+++++  +.++++...+               +.|..+|.. +.  ...+..+....
T Consensus        99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~  174 (314)
T 1pjx_A           99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFP  174 (314)
T ss_dssp             TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSE
T ss_pred             CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCCc
Confidence            88 665432 221   122457888884  5666666554               567777765 33  22223334456


Q ss_pred             EeEEEc----CCCCEEEEE-ECCCcEEEEeCC-CCCCCCcceeeeeecccc-cceeEEEecCCCCcEEEEeCCCCCCeEE
Q 012679          271 CGLKWS----ASGQQLASG-GNDNLLHIWDRS-MASSNSVTQWLHRLEEHT-SAVKAIAWCPFQSNLLATGGGGGDRCIK  343 (458)
Q Consensus       271 ~~l~~s----pd~~~l~sg-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~ll~s~~g~~d~~i~  343 (458)
                      .+++|+    |+++.|+.+ ..++.|.+||.. .+... .......+..+. ..+..+++++++. ++++..  .++.|.
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~--~~~~i~  250 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANW--GSSHIE  250 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE-EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEE--TTTEEE
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc-cceEEEECCCCCCCCCCceEECCCCC-EEEEEc--CCCEEE
Confidence            889999    999766555 567899999976 22210 001122333343 5678899999764 555443  578999


Q ss_pred             EEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          344 FWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       344 lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      +||..+++.+..+... ..+.+++++++++.|+++. ..++.|..|+...
T Consensus       251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~l~~~~~~~  299 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-HENNAVWKFEWQR  299 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE-TTTTEEEEEECSS
T ss_pred             EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe-CCCCeEEEEeCCC
Confidence            9999888877777654 6789999999999776653 3567899998764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=1.7e-12  Score=124.29  Aligned_cols=171  Identities=12%  Similarity=0.006  Sum_probs=133.5

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-----------eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEc
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-----------QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~  253 (458)
                      .+..+++++...++++|+.+ .+.+|++...+           ......  +.. |..++|++..|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~fd~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCFHGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence            68999999999999999998 56679865433           112222  566 99999988899998 8899999999


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      ++... ......|...+.++.+.+..  +++++.||.|.+||+.....      ..    +...|++++|+|.|  + +.
T Consensus       114 ~sl~~-~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~------~~----~~~~Vs~v~WSpkG--~-~v  177 (388)
T 1xip_A          114 EELSE-FRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST------KQ----LAQNVTSFDVTNSQ--L-AV  177 (388)
T ss_dssp             SSTTC-EEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE------EE----EEESEEEEEECSSE--E-EE
T ss_pred             hhhhc-cCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc------cc----ccCCceEEEEcCCc--e-EE
Confidence            87664 44566777888888877653  99999999999999987654      21    45689999999987  3 44


Q ss_pred             eCCCCCCeEEEEECCCCCe--eEEE------e----CCCCeEEEEEcCCCCeEEEEe
Q 012679          334 GGGGGDRCIKFWNTHTGAC--LNSV------D----TGSQVCALLWNKNERELLSSH  378 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~--~~~~------~----~~~~v~~~~~s~~~~~l~~~~  378 (458)
                      |.  .||.+++|+...+++  ..++      .    +...|.++.|.+++.++++-.
T Consensus       178 g~--~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          178 LL--KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EE--TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EE--cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            44  799999999888776  5566      2    356799999999999988743

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.44  E-value=1.7e-11  Score=128.26  Aligned_cols=202  Identities=9%  Similarity=0.026  Sum_probs=137.9

Q ss_pred             CcccEEEEEe--CCCeEE-----EEeCCCcEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEECCCc------
Q 012679          225 HRSRVGSLAW--NNHILT-----TGGMDGLIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGNDNL------  290 (458)
Q Consensus       225 ~~~~v~~l~~--~~~~l~-----sg~~dg~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~------  290 (458)
                      |...+..++|  ++++|+     .|+.+..|++||+.++... ...+..  .....++|+|||+.|+.++.|..      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccc
Confidence            5567888888  467777     3344568999999987642 111211  11268999999999999998876      


Q ss_pred             -------EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC-CCCeEEEEECCCCCeeEEEeCCCCe
Q 012679          291 -------LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG-GDRCIKFWNTHTGACLNSVDTGSQV  362 (458)
Q Consensus       291 -------i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~-~d~~i~lwd~~~~~~~~~~~~~~~v  362 (458)
                             |++|++.++....  ..+.....|...+..+.|+|++..++++.... ....|.+||..+++..........+
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  274 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC
T ss_pred             cCCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce
Confidence                   9999998765311  12334445666788999999998888776311 1236788877666655555555556


Q ss_pred             EEEEEcCCCCeEEEEec--CCCCcEEEEeCCCcee--eEEEeCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          363 CALLWNKNERELLSSHG--FTQNQLTLWKYPSMVK--MAELSGH--TSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       363 ~~~~~s~~~~~l~~~~g--~~d~~i~iwd~~~~~~--~~~~~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ....| +++. ++..+.  ..++.|.+||+.++..  ...+..|  ...+..++|+ ++.++++...|+..+||.+.
T Consensus       275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            66666 5666 555432  1367899999987653  2344433  4568888998 77888999999998888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=1.7e-11  Score=129.26  Aligned_cols=253  Identities=13%  Similarity=0.047  Sum_probs=162.8

Q ss_pred             CceeeeCCCCCCc--cccceeeccCC-CeEEEEc-C-----CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE
Q 012679          129 SERTLDAPDLVDD--YYLNLLDWGSS-NVLAIAL-G-----STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA  199 (458)
Q Consensus       129 ~~~~l~~~~~~~d--~~~~~~~~~~~-~~la~~~-d-----~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la  199 (458)
                      ++.++|...+..+  +.+..+.|+++ +.++.+. +     ..|++||+.+++.... .+.  ...+..++|+|| +.|+
T Consensus       148 ~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~--~~~~~~~~wspD-~~l~  223 (741)
T 1yr2_A          148 GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELK--WVKFSGLAWLGN-DALL  223 (741)
T ss_dssp             CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEE--EEESCCCEESTT-SEEE
T ss_pred             CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCC--CceeccEEEECC-CEEE
Confidence            4555555444444  36778899983 4444433 2     3699999999987432 111  112357899999 9999


Q ss_pred             EEecCCe--------------EEEEeCCCcee--eEEecC-CCcccEEEEEe--CCCeEEEEeCCC-----cEEEEEccC
Q 012679          200 IGLNNCQ--------------VQLWDSTANRQ--LRTLRG-GHRSRVGSLAW--NNHILTTGGMDG-----LIINNDVRV  255 (458)
Q Consensus       200 ~g~~dg~--------------v~iwd~~~~~~--~~~~~~-~~~~~v~~l~~--~~~~l~sg~~dg-----~i~vwd~~~  255 (458)
                      .++.++.              |++|++.++..  ...+.. .+...+..+.|  +|++|+..+.++     .|++||+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence            8887654              89999987652  122222 13345788888  467777776543     899999987


Q ss_pred             CCee-EEEEcccccceEeEEEcCCCCEEEEEECC----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          256 RDHI-VETYRGHNQEVCGLKWSASGQQLASGGND----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       256 ~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      +... ...+..+...+.... +|+|+.|+..+++    +.|.+||+..+. .   .+...+..+...+..++|.  +..+
T Consensus       304 ~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~---~~~~l~~~~~~~l~~~~~~--~~~l  376 (741)
T 1yr2_A          304 GKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-P---RFDTVVPESKDNLESVGIA--GNRL  376 (741)
T ss_dssp             TEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-C---EEEEEECCCSSEEEEEEEE--BTEE
T ss_pred             CCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-c---ccEEEecCCCCeEEEEEEE--CCEE
Confidence            6222 344444444444443 4899999888864    459999987642 0   1123333444556677776  4567


Q ss_pred             EEEeCCCCCCeEEEEECC-CCCeeEEEeC--CCCeEEEEEcCCCCeEEEEe--cCCCCcEEEEeCCCce
Q 012679          331 LATGGGGGDRCIKFWNTH-TGACLNSVDT--GSQVCALLWNKNERELLSSH--GFTQNQLTLWKYPSMV  394 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~--g~~d~~i~iwd~~~~~  394 (458)
                      +++..  .|+..++|.+. ++.....+..  ...+..+.++++++.++.+.  ....++|++||+.+++
T Consensus       377 v~~~~--~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          377 FASYI--HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEE--ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEE--ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            77765  78877776544 4666666653  45688899999998776442  2345789999998876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=4.2e-10  Score=106.35  Aligned_cols=217  Identities=9%  Similarity=-0.018  Sum_probs=147.1

Q ss_pred             EEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          186 VTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       186 V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      ..+..|+|++. +++++..++.|.+||..+++.. .+.  ....+.+++|+  +.+++ ++.+ .|.+||..++..  ..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~--~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVL--TL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCE--EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcE--EE
Confidence            46778999754 5566667889999999887643 333  34578899884  55554 4444 499999876653  22


Q ss_pred             Ecc-----cccceEeEEEcCCCCEEEEEEC------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          263 YRG-----HNQEVCGLKWSASGQQLASGGN------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       263 ~~~-----h~~~v~~l~~spd~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      +..     ....+.++.++|+|+++++...      .+.|..++  .+.       ...+..+......++|+|++..++
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-------~~~~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-------VTKLFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-------EEEEEEEESSEEEEEECTTSCEEE
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-------EEEeeCCCcccCCeEEcCCCCEEE
Confidence            211     1246889999999997765542      24555565  222       222223334567899999988887


Q ss_pred             EEeCCCCCCeEEEEECC--CC-Ce-----eEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          332 ATGGGGGDRCIKFWNTH--TG-AC-----LNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       332 ~s~~g~~d~~i~lwd~~--~~-~~-----~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ++..  .++.|.+||+.  ++ ..     +..+. .......++++++|..+++..  .++.|.+|+. +++.+..+..+
T Consensus       195 v~~~--~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~--~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          195 FVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW--GEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             EEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--TTTEEEEECT-TCCEEEEEECS
T ss_pred             EEEC--CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe--CCCEEEEECC-CCCEEEEEECC
Confidence            7765  67899999986  56 32     21221 134467899999998777643  4678999998 67777778777


Q ss_pred             CCcEEEEEEc-CCCCEEEEEeC
Q 012679          403 TSRVLFMAQS-PDGCTVASAAA  423 (458)
Q Consensus       403 ~~~V~~l~~s-pdg~~l~s~s~  423 (458)
                      ...+++++|+ +++..|+.++.
T Consensus       270 ~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          270 GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCcEEEEEecCCCCEEEEEec
Confidence            7789999998 88887755544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.37  E-value=5.7e-11  Score=123.35  Aligned_cols=283  Identities=10%  Similarity=0.048  Sum_probs=187.9

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC-----------CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG-----------PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~-----------~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      .+.+++++.++.|+.+|..+|+.  +.++.....           ....+++  ++..|++++.|+.|..+|..+++.+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNR--IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE--EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcE--EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            35677777789999999999987  444432211           0012222  46688899999999999999999998


Q ss_pred             EecCCCc----ccEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEccc----------------------
Q 012679          220 TLRGGHR----SRVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRGH----------------------  266 (458)
Q Consensus       220 ~~~~~~~----~~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h----------------------  266 (458)
                      .+.....    ..+. .....+..++.++.      +|.|+.+|..+++.........                      
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             eecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            8875201    1111 11223455555553      7899999999887643332211                      


Q ss_pred             ---------ccceEeEEEcCCCCEEEEEECCC-------------------cEEEEeCCCCCCCCcceeeeeecccc---
Q 012679          267 ---------NQEVCGLKWSASGQQLASGGNDN-------------------LLHIWDRSMASSNSVTQWLHRLEEHT---  315 (458)
Q Consensus       267 ---------~~~v~~l~~spd~~~l~sg~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~h~---  315 (458)
                               ......++++|++..++.++.++                   .|..+|..+++.    .+......|.   
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~----~W~~~~~~~d~wd  308 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY----KWHYQETPGDNWD  308 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE----EEEEESSTTCCSC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE----EEEEecCCCcccc
Confidence                     01113578889999998887664                   499999988875    2222332231   


Q ss_pred             ----cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC------------e---------------
Q 012679          316 ----SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ------------V---------------  362 (458)
Q Consensus       316 ----~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~------------v---------------  362 (458)
                          ....-+....++.  .+++.++  .+|.|+++|..+|+.+..+.....            +               
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~  386 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             cccCCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence                1111222223443  5566655  899999999999999877653210            0               


Q ss_pred             ---------EEEEEcCCCCeEEEEecC-----------------------------------------CCCcEEEEeCCC
Q 012679          363 ---------CALLWNKNERELLSSHGF-----------------------------------------TQNQLTLWKYPS  392 (458)
Q Consensus       363 ---------~~~~~s~~~~~l~~~~g~-----------------------------------------~d~~i~iwd~~~  392 (458)
                               ..++++|+...+++....                                         ..+.|..||+.+
T Consensus       387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t  466 (677)
T 1kb0_A          387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA  466 (677)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred             cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence                     146788988888774321                                         127899999999


Q ss_pred             ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      ++.+.++. +..++....+..++..++.++.||.|++||..+++.+.+...+
T Consensus       467 G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          467 QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            99988876 3344455556677888999999999999999999988775543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=1.7e-09  Score=100.56  Aligned_cols=225  Identities=14%  Similarity=0.133  Sum_probs=147.6

Q ss_pred             cceeeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          144 LNLLDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       144 ~~~~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .....|++  +.++.+. .++.|+.||..+++.. ...   ....+.+++++++|++++ +. ++.|.+||..+++....
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEE
Confidence            34567776  3455554 4689999999987752 222   246799999999999544 44 56899999988765433


Q ss_pred             ecC---CCcccEEEEEeC--CCeEEEEeCC---------CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EE
Q 012679          221 LRG---GHRSRVGSLAWN--NHILTTGGMD---------GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SG  285 (458)
Q Consensus       221 ~~~---~~~~~v~~l~~~--~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg  285 (458)
                      ...   .....+..++++  +.++++....         ..-.+|.+...... ..+..+.....+++|+||++.|+ +.
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEec
Confidence            221   123457888885  5655543221         22345544433322 22333445578999999998775 45


Q ss_pred             ECCCcEEEEeCC--CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCe
Q 012679          286 GNDNLLHIWDRS--MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQV  362 (458)
Q Consensus       286 ~~dg~i~iwd~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v  362 (458)
                      +.++.|.+||+.  ++... ..+....+..+......+++.+++ .+.++..  ..+.|..||..+++.+..+..+ ..+
T Consensus       168 ~~~~~i~~~~~d~~~G~~~-~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQIS-NRRSVYKLEKEEQIPDGMCIDAEG-KLWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEE-EEEEEEECCGGGCEEEEEEEBTTS-CEEEEEE--TTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             CCCCcEEEEeccCCCCccc-CcEEEEECCCCCCCCCeeEECCCC-CEEEEEc--CCCEEEEEcCCCceEEEEEECCCCCc
Confidence            567899999974  33211 011123333445667899999987 4555543  5678999999999999998876 579


Q ss_pred             EEEEEc-CCCCeEEEEec
Q 012679          363 CALLWN-KNERELLSSHG  379 (458)
Q Consensus       363 ~~~~~s-~~~~~l~~~~g  379 (458)
                      ++++|. |+++.|++++.
T Consensus       244 t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          244 TSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEESGGGCEEEEEEB
T ss_pred             eEEEEeCCCCCEEEEEcC
Confidence            999998 88888887654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.36  E-value=4.9e-10  Score=104.71  Aligned_cols=228  Identities=11%  Similarity=0.042  Sum_probs=151.7

Q ss_pred             CCCCCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCC
Q 012679          181 DENGPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       181 ~h~~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                      ..........|+|+|+ +++++..++.|..|+. +++ ...+.. +...+..++++  +.++++...++.|.+|+.. +.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            3455678899999998 5666777889999997 444 344443 55678889985  5655555556889999986 33


Q ss_pred             eeEEEEccc-----ccceEeEEEcCCCCEEEE----EEC-------------CCcEEEEeCCCCCCCCcceeeeeecccc
Q 012679          258 HIVETYRGH-----NQEVCGLKWSASGQQLAS----GGN-------------DNLLHIWDRSMASSNSVTQWLHRLEEHT  315 (458)
Q Consensus       258 ~~~~~~~~h-----~~~v~~l~~spd~~~l~s----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~  315 (458)
                      .  ..+..+     ...+..++++++|+++++    |..             .+.|..||..++..       ..+. ..
T Consensus       118 ~--~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-------~~~~-~~  187 (305)
T 3dr2_A          118 A--HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-------QRMA-DL  187 (305)
T ss_dssp             E--EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-------EEEE-EE
T ss_pred             E--EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-------EEEe-cC
Confidence            2  222111     134678999999998886    332             25677777655543       1122 33


Q ss_pred             cceeEEEecCCCCcEEEEeCCC---CCCeEEEEECCCCCee--EEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEE
Q 012679          316 SAVKAIAWCPFQSNLLATGGGG---GDRCIKFWNTHTGACL--NSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLW  388 (458)
Q Consensus       316 ~~v~~l~~~p~~~~ll~s~~g~---~d~~i~lwd~~~~~~~--~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iw  388 (458)
                      .....++|+|++..++++....   ..+.|.+|++..+...  ..+.  .......++++++|+..++.    .+.|.+|
T Consensus       188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~----~~gv~~~  263 (305)
T 3dr2_A          188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS----GTGVCVF  263 (305)
T ss_dssp             SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC----SSEEEEE
T ss_pred             CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec----CCcEEEE
Confidence            4567899999988777765410   0378999998765411  1111  13345678999999955442    3459999


Q ss_pred             eCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 012679          389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLR  428 (458)
Q Consensus       389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~  428 (458)
                      +. .++.+..+..+. .+.+++|+|+++.|..++.++..+
T Consensus       264 ~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          264 DS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            97 577777776555 588999999999888887765433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.35  E-value=2.8e-10  Score=110.47  Aligned_cols=235  Identities=11%  Similarity=0.068  Sum_probs=163.6

Q ss_pred             cCCEEEEEECCCCCeeeEEEecCC-----CCCEEEEEEcCCCCEEEEEec--CCeEEEEeCCCceeeEEecCCCcccEEE
Q 012679          159 LGSTVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGLN--NCQVQLWDSTANRQLRTLRGGHRSRVGS  231 (458)
Q Consensus       159 ~d~~v~iwd~~~~~~~~~~~~~~h-----~~~V~~v~~s~~g~~la~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~v~~  231 (458)
                      .++.|.++|..+++......+.+.     ......+.|+|||++|+++..  ++.|.+.|+.+++.+.++..+..   ..
T Consensus       147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~  223 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YH  223 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EE
T ss_pred             CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---ee
Confidence            367999999999987544444311     123567899999999999874  57899999999999998875221   22


Q ss_pred             EEe-CCCeEEEEeCCCcEEEEEccCCCeeEEE----Ecccccc-eEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          232 LAW-NNHILTTGGMDGLIINNDVRVRDHIVET----YRGHNQE-VCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       232 l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~----~~~h~~~-v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      +.. ....+++.+.||.+.+.+...+.. ...    +.....+ ...+.|.+++..++..+..+.|.+.|..........
T Consensus       224 ~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~  302 (426)
T 3c75_H          224 IFPASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA  302 (426)
T ss_dssp             EEEEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC
T ss_pred             eccCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee
Confidence            222 346777888899999888844432 211    1111111 123568899998888888899999998654321000


Q ss_pred             eeeeeec-------ccccceeEEEecCCCCcEEEEeCC----C---CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679          306 QWLHRLE-------EHTSAVKAIAWCPFQSNLLATGGG----G---GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE  371 (458)
Q Consensus       306 ~~~~~~~-------~h~~~v~~l~~~p~~~~ll~s~~g----~---~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~  371 (458)
                      . .....       ........++++|++..++++...    +   .++.|.++|..+++.+..+..+.....+.|+|++
T Consensus       303 ~-~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg  381 (426)
T 3c75_H          303 P-IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA  381 (426)
T ss_dssp             C-EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred             e-eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC
Confidence            0 00000       011222347899998888876421    0   1357999999999999999888889999999999


Q ss_pred             C-eEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          372 R-ELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       372 ~-~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      + .++++. ..++.|.++|..+++.+.++
T Consensus       382 ~~~lyv~n-~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          382 EPLLYALS-AGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             SCEEEEEE-TTTTEEEEEETTTCCEEEEE
T ss_pred             CEEEEEEc-CCCCeEEEEECCCCCEEEEe
Confidence            9 777654 36899999999999999887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.34  E-value=2.3e-10  Score=119.06  Aligned_cols=283  Identities=12%  Similarity=0.083  Sum_probs=183.5

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC----------E-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGP----------V-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~----------V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      .+.+++++.++.|+.+|..+|+.  +.++..+...          + ..+..  ++..|++++.||.|..+|..+|+.+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRL--IWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCce--eEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence            36677777889999999999987  5554332210          0 11122  45688899999999999999999988


Q ss_pred             EecCC-Cc---ccEE-EEEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEcc-----------------------
Q 012679          220 TLRGG-HR---SRVG-SLAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRG-----------------------  265 (458)
Q Consensus       220 ~~~~~-~~---~~v~-~l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~-----------------------  265 (458)
                      .+... +.   ..+. +-...+..++.++      .+|.|..||.++++..-.....                       
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            77642 11   1111 1111234445543      3789999999988864333211                       


Q ss_pred             -------cccceEeEEEcCCCCEEEEEECCCc-------------------EEEEeCCCCCCCCcceeeeeecccc----
Q 012679          266 -------HNQEVCGLKWSASGQQLASGGNDNL-------------------LHIWDRSMASSNSVTQWLHRLEEHT----  315 (458)
Q Consensus       266 -------h~~~v~~l~~spd~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~h~----  315 (458)
                             +......++++|++.+++.++.++.                   |..+|..+++.    .+......|.    
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~----~W~~~~~~~d~wd~  301 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY----VWHYQTTPGDAWDY  301 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE----EEEEESSTTCCSCC
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce----eEeeecCCcccccc
Confidence                   0011135788898899999887764                   99999998876    2222222221    


Q ss_pred             ---cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC------------------------------
Q 012679          316 ---SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGS------------------------------  360 (458)
Q Consensus       316 ---~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~------------------------------  360 (458)
                         ..+.......++.  .+++.++  .+|.++++|..+|+.+.......                              
T Consensus       302 ~~~~~~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~  379 (689)
T 1yiq_A          302 TATQHMILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN  379 (689)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred             cCCCCcEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence               1111111111232  2566654  89999999999999885443211                              


Q ss_pred             ----------CeEEEEEcCCCCeEEEEecC-------------------------------------------CCCcEEE
Q 012679          361 ----------QVCALLWNKNERELLSSHGF-------------------------------------------TQNQLTL  387 (458)
Q Consensus       361 ----------~v~~~~~s~~~~~l~~~~g~-------------------------------------------~d~~i~i  387 (458)
                                ....++++|+...+++....                                           .+|.|..
T Consensus       380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A  459 (689)
T 1yiq_A          380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA  459 (689)
T ss_dssp             EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred             EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence                      11236788888877764211                                           0377999


Q ss_pred             EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      ||+.+++.+.++..+.. +..-.+...+.+++.++.||.|+.||..+++.+.+...+
T Consensus       460 ~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          460 WDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            99999999988875542 333355667889999999999999999999988765443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.30  E-value=3.8e-09  Score=101.68  Aligned_cols=269  Identities=10%  Similarity=0.042  Sum_probs=170.6

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCC-------CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDE-------NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-------~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .+.+++++.++.|+.+|..+|+..-...+...       ...+.+. ...++..+++++.+|.|..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            46677777889999999999987333333211       1223222 222456788899999999999999998877764


Q ss_pred             CCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccce-----EeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          224 GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEV-----CGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       224 ~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                       ...........+..++.++.++.|..+|..+++..... .......     .....  .+..++.++.++.|..+|..+
T Consensus       132 -~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~t  207 (376)
T 3q7m_A          132 -AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQ  207 (376)
T ss_dssp             -SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTT
T ss_pred             -CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCC
Confidence             22222222334678888999999999999888753322 2111110     11222  245678888899999999988


Q ss_pred             CCCCCcceeeeeecccc--cc--------e-eEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEE
Q 012679          299 ASSNSVTQWLHRLEEHT--SA--------V-KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLW  367 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~--~~--------v-~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~  367 (458)
                      ++.      +.......  ..        + .....  .+..+++ ++  .++.+..+|..+|+.+....... ...+..
T Consensus       208 G~~------~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~-~~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~  275 (376)
T 3q7m_A          208 GQM------IWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFA-LA--YNGNLTALDLRSGQIMWKRELGS-VNDFIV  275 (376)
T ss_dssp             CCE------EEEEECCC-----------CCCCCCEE--ETTEEEE-EC--TTSCEEEEETTTCCEEEEECCCC-EEEEEE
T ss_pred             CcE------EEEEecccCCCCcccccccccCCCcEE--ECCEEEE-Ee--cCcEEEEEECCCCcEEeeccCCC-CCCceE
Confidence            765      22221110  00        0 01111  1344444 33  78999999999999887776443 333333


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                        ++..++++  ..++.|..+|..+++.+...... ...+.....  .+..|+.++.+|.|.++|..+++...+..
T Consensus       276 --~~~~l~~~--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          276 --DGNRIYLV--DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             --ETTEEEEE--ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             --ECCEEEEE--cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence              35566663  36889999999999988776522 222222333  24578889999999999998887765543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=3.4e-09  Score=102.01  Aligned_cols=260  Identities=12%  Similarity=0.037  Sum_probs=164.7

Q ss_pred             eccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcc
Q 012679          148 DWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS  227 (458)
Q Consensus       148 ~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~  227 (458)
                      ....+.+++++.++.|+.+|..+|+..-...+..  ........  .+..+++++.+|.|..+|..+++.+..... ...
T Consensus       100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~  174 (376)
T 3q7m_A          100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMP  174 (376)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTCCEEEEEECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CC-
T ss_pred             eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCC
Confidence            3345778888889999999999998733333322  11111112  245788899999999999999998887764 211


Q ss_pred             cE-----EEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc------ceEeEEEcC--CCCEEEEEECCCcEEEE
Q 012679          228 RV-----GSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ------EVCGLKWSA--SGQQLASGGNDNLLHIW  294 (458)
Q Consensus       228 ~v-----~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~------~v~~l~~sp--d~~~l~sg~~dg~i~iw  294 (458)
                      ..     ......+..++.++.+|.|..+|..+++.....-.....      .+..+.-.|  .+..++.++.++.+..+
T Consensus       175 ~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          175 SLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             ----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             ceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence            11     222334677888899999999999887754332211110      000011111  35677888889999999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-C-CCeEEEEEcCCCC
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-G-SQVCALLWNKNER  372 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~-~~v~~~~~s~~~~  372 (458)
                      |..+++.      +....  ......+...  +..+++..   .++.|..+|..+|+.+..... . ..+.....  .+.
T Consensus       255 d~~tG~~------~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~  319 (376)
T 3q7m_A          255 DLRSGQI------MWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNG  319 (376)
T ss_dssp             ETTTCCE------EEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETT
T ss_pred             ECCCCcE------Eeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECC
Confidence            9988765      22222  1223344443  45555544   688999999999998877752 2 22222222  245


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEe
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLF-MAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~-l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      .+++  +..+|.|.++|..+++.+.........+.. ...  .+..|+.++.||.|..|+
T Consensus       320 ~l~v--~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          320 NLVV--GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEE--ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEE--EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            6666  447899999999999988877653333322 222  245778899999999987

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.28  E-value=5.7e-10  Score=106.48  Aligned_cols=238  Identities=8%  Similarity=-0.038  Sum_probs=151.4

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCCc-----
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGHR-----  226 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~~-----  226 (458)
                      .|.++|..+++.  +.++.....+  .+.++|||++++++.          .++.|.+||+.+++.+.++..+..     
T Consensus        47 ~vsvID~~t~~v--~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVT--LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEE--EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             eEEEEECCCCeE--EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence            899999999988  4444433445  799999999999886          367899999999999999864200     


Q ss_pred             -ccEEEEEe--CCCeEEEEeC--CCcEEE--EEccCCCeeEEEEcc-cc------cceEeEEE-----------------
Q 012679          227 -SRVGSLAW--NNHILTTGGM--DGLIIN--NDVRVRDHIVETYRG-HN------QEVCGLKW-----------------  275 (458)
Q Consensus       227 -~~v~~l~~--~~~~l~sg~~--dg~i~v--wd~~~~~~~~~~~~~-h~------~~v~~l~~-----------------  275 (458)
                       .....+++  ++++++++..  +..|.+  +|..+    +..+.. ..      +.-.-+.+                 
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~  198 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA  198 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence             12234444  6788888764  456888  88865    111110 00      00000111                 


Q ss_pred             --------------------cCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc----------cccceeEEEecC
Q 012679          276 --------------------SASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE----------HTSAVKAIAWCP  325 (458)
Q Consensus       276 --------------------spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~p  325 (458)
                                          .+++..++..+. +.|.+.|.......    .+..+.-          .......++++|
T Consensus       199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~----v~~~~~~~~~~~~~~~~~p~g~~~v~~s~  273 (368)
T 1mda_H          199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGAT----MKAAIDGNESGRKADNFRSAGFQMVAKLK  273 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCE----EECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred             CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcce----EEEEEEeccccccccccccCcceeeEEcC
Confidence                                222333333333 55555555432110    0111100          011122378999


Q ss_pred             CCCcEEEEeCCC-C-----CCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          326 FQSNLLATGGGG-G-----DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       326 ~~~~ll~s~~g~-~-----d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      ++..++++.... .     +..+.++|+.+++.+..+..+.....+.|+++++.++++.+..++.|.++|+.+++.+.++
T Consensus       274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence            988888764200 1     2346699999999999998888899999999999877765545899999999999999998


Q ss_pred             eCCCCcEEEEEEcC
Q 012679          400 SGHTSRVLFMAQSP  413 (458)
Q Consensus       400 ~~h~~~V~~l~~sp  413 (458)
                      ..... ...+++.+
T Consensus       354 ~vg~~-P~~i~~~~  366 (368)
T 1mda_H          354 ELDKG-PESLSVQN  366 (368)
T ss_dssp             CCCSC-CCEEECCC
T ss_pred             ECCCC-CCEEEeec
Confidence            75543 34566543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=2.8e-08  Score=93.74  Aligned_cols=220  Identities=9%  Similarity=-0.004  Sum_probs=141.7

Q ss_pred             ceeeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          145 NLLDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       145 ~~~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      ....|++  +.++.+. .++.|+.||..+++... ...   ...+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~---~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL---PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC---SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC---CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            3466776  3455554 47899999998876532 222   4579999999999876654 44 5999999887754332


Q ss_pred             cC---CCcccEEEEEeC--CCeEEEEeC------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE-ECCC
Q 012679          222 RG---GHRSRVGSLAWN--NHILTTGGM------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG-GNDN  289 (458)
Q Consensus       222 ~~---~~~~~v~~l~~~--~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg-~~dg  289 (458)
                      ..   .....+.++.++  +.++++...      .+.|..++  .+ . ...+..+.....+++|+||++.|+.+ +.++
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFADISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence            21   113468888885  555554432      24555555  33 2 22232333457789999999877555 4578


Q ss_pred             cEEEEeCC--CC-CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-CeEEE
Q 012679          290 LLHIWDRS--MA-SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-QVCAL  365 (458)
Q Consensus       290 ~i~iwd~~--~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-~v~~~  365 (458)
                      .|.+||+.  ++ .... ......+.........+++.+++..++++.   .++.|..||. +++.+..+.... .+.++
T Consensus       202 ~I~~~d~~~~~Gl~~~~-~~~~~~~~~~~~~p~gi~~d~~G~lwva~~---~~~~v~~~d~-~g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             EEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred             EEEEEEcccccCCcccC-ceEEEECCCCCCCCCeeEECCCCCEEEEEe---CCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence            99999986  33 2211 111223333345667899999775444433   4678999998 677777776654 68999


Q ss_pred             EEc-CCCCeEEEEec
Q 012679          366 LWN-KNERELLSSHG  379 (458)
Q Consensus       366 ~~s-~~~~~l~~~~g  379 (458)
                      +|. ++++.|++++.
T Consensus       277 af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          277 AFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEESTTSCEEEEEEB
T ss_pred             EEecCCCCEEEEEec
Confidence            998 88888876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=2.1e-09  Score=111.57  Aligned_cols=280  Identities=13%  Similarity=0.091  Sum_probs=177.5

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC-C----CCEEEEEEcCCCCEEEEEec------CCeEEEEeCCCceee
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDE-N----GPVTSVNWAPDGRHIAIGLN------NCQVQLWDSTANRQL  218 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~----~~V~~v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~  218 (458)
                      ..+.+++++.++.|+.+|..+|+.  +.++..+ .    ..+.+.-.. .+..+++++.      +|.|+.||..+++.+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~--~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKE--VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCE--EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCE--EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            456788888899999999999997  4444332 1    111110001 2445666654      689999999999998


Q ss_pred             EEecCCCcc-------------------------------cEEEEEe--CCCeEEEEeCCC-------------------
Q 012679          219 RTLRGGHRS-------------------------------RVGSLAW--NNHILTTGGMDG-------------------  246 (458)
Q Consensus       219 ~~~~~~~~~-------------------------------~v~~l~~--~~~~l~sg~~dg-------------------  246 (458)
                      ..+......                               ....+++  .+..++.+..++                   
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            877641111                               0013444  467788777664                   


Q ss_pred             cEEEEEccCCCeeEEEEcc-cc-------cceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCCCCccee-----eee
Q 012679          247 LIINNDVRVRDHIVETYRG-HN-------QEVCGLKWSASG---QQLASGGNDNLLHIWDRSMASSNSVTQW-----LHR  310 (458)
Q Consensus       247 ~i~vwd~~~~~~~~~~~~~-h~-------~~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~  310 (458)
                      .|..+|.++++..-..-.. |.       ....-+....+|   ..++.++.+|.|+++|..+++.......     ...
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            4999999988754332221 21       112223333477   6889999999999999998875211000     000


Q ss_pred             ecccccce------------------------eEEEecCCCCcEEEEeC--------------C----------------
Q 012679          311 LEEHTSAV------------------------KAIAWCPFQSNLLATGG--------------G----------------  336 (458)
Q Consensus       311 ~~~h~~~v------------------------~~l~~~p~~~~ll~s~~--------------g----------------  336 (458)
                      +......+                        ..++++|+...+++...              |                
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence            00000001                        25688887665554321              0                


Q ss_pred             ----------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC-Cc
Q 012679          337 ----------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT-SR  405 (458)
Q Consensus       337 ----------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~-~~  405 (458)
                                ...+.|..||+.+++.+..+..+.++....+...+..+++  |..++.+++||..+++.+.++.... ..
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~  521 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVV  521 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCcc
Confidence                      0127899999999999999887776666667778888877  4589999999999999999987433 22


Q ss_pred             EEEEEEcCCCCEEE-EEeC----------------CCcEEEEecCC
Q 012679          406 VLFMAQSPDGCTVA-SAAA----------------DETLRFWNVFG  434 (458)
Q Consensus       406 V~~l~~spdg~~l~-s~s~----------------Dg~i~iW~~~~  434 (458)
                      ..-+.+..+|+.++ +.+.                .+.+.+|.+..
T Consensus       522 ~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          522 AAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             SCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             cCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            23455667886444 3333                46888998873

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=8e-09  Score=100.67  Aligned_cols=230  Identities=8%  Similarity=-0.019  Sum_probs=149.7

Q ss_pred             cceeeccCC-CeEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeE
Q 012679          144 LNLLDWGSS-NVLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLR  219 (458)
Q Consensus       144 ~~~~~~~~~-~~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~  219 (458)
                      ...+.|+++ +++++.. ++.|++||..++.+..+...   ..... ++|+++++.|+++..++  .|.+|+...+....
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            456777764 4555544 47999999998876444332   22234 99999999999988766  79999987665544


Q ss_pred             Ee---cCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEE---Ecccccce--EeEEEcCC-CCEEEEEECC
Q 012679          220 TL---RGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVET---YRGHNQEV--CGLKWSAS-GQQLASGGND  288 (458)
Q Consensus       220 ~~---~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~h~~~v--~~l~~spd-~~~l~sg~~d  288 (458)
                      .+   .......+.+++++  +..|+.+..++.|+.||..+.......   ..++...-  ..++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44   11134556778885  356666778899999999866532210   11222222  38999995 5556666678


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeeccc---------------ccceeEEEecCCCCcEEEEeCCC-CCCeEEEEECCCCCe
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEH---------------TSAVKAIAWCPFQSNLLATGGGG-GDRCIKFWNTHTGAC  352 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~p~~~~ll~s~~g~-~d~~i~lwd~~~~~~  352 (458)
                      +.|+.|+....        +..+.++               -.....++++|++. ++++.  + .++.|+.|+..++..
T Consensus       289 ~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          289 SSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             TEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEE
T ss_pred             CEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEE
Confidence            89999987643        1111111               13467899999876 55553  2 478999999888875


Q ss_pred             eEEEeC---------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          353 LNSVDT---------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       353 ~~~~~~---------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      ......               -.....+++++++..+++  ...++.|+.+++
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred             EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence            443332               135789999999766655  445677776654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=5.6e-08  Score=88.71  Aligned_cols=247  Identities=9%  Similarity=0.029  Sum_probs=159.4

Q ss_pred             EEEEcCCEEEEEECCCCCee-----eEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCccc
Q 012679          155 LAIALGSTVYLWDASDGTTS-----ELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSR  228 (458)
Q Consensus       155 la~~~d~~v~iwd~~~~~~~-----~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~  228 (458)
                      +..+..+.|+.+++......     .+....  ...+..++|++++..|.++. .++.|..++.........+.. ....
T Consensus         4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~--~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~   80 (267)
T 1npe_A            4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIP--AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGS   80 (267)
T ss_dssp             EEEEEEEEEEEEEESSSCBCGGGCEEEEEEE--EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCC
T ss_pred             EEEEcCCeEEEEEecCcccccccceeeecCC--CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-CCCC
Confidence            33444568999998765431     122211  23478999999766666554 567999999876654333332 2345


Q ss_pred             EEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCC
Q 012679          229 VGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSN  302 (458)
Q Consensus       229 v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~  302 (458)
                      ...++++  +. ++++-...+.|.++++..... .............++++|++..|..+..   .+.|..+++..... 
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-  158 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-  158 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-
Confidence            6777774  44 444555678899999875432 1222222245789999997666655554   36888888764322 


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCC
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQ  382 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d  382 (458)
                           .............++++|++..++++..  ..+.|..+|.........+........++..  +..++.+ ....
T Consensus       159 -----~~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~  228 (267)
T 1npe_A          159 -----RILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKT  228 (267)
T ss_dssp             -----EEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTT
T ss_pred             -----EEEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCC
Confidence                 1111122345678999998888888876  6789999999865544444444455677654  5566655 3457


Q ss_pred             CcEEEEeCCCceeeEEEeCCC-CcEEEEEEcCCCC
Q 012679          383 NQLTLWKYPSMVKMAELSGHT-SRVLFMAQSPDGC  416 (458)
Q Consensus       383 ~~i~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~  416 (458)
                      +.|.++|..+++.+.++.... .....+++.|++.
T Consensus       229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            899999999999888886433 2467888888875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=7.8e-09  Score=98.26  Aligned_cols=242  Identities=10%  Similarity=-0.049  Sum_probs=150.6

Q ss_pred             CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe--cCCeEEEEeCCCceeeEEec------CCCcccEEEEEeCC-CeEEE
Q 012679          171 GTTSELVTVDDENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWNN-HILTT  241 (458)
Q Consensus       171 ~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~--~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~~-~~l~s  241 (458)
                      ++++.+..+.   ..+..|+++++|+++++..  .++.++||.+.+++. ..+.      ..+-..+..+++++ ..|..
T Consensus         7 g~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A            7 DRLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             -CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEE
T ss_pred             ceeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEE
Confidence            4444455543   5799999999999888864  234355555545543 3221      12456889999963 34444


Q ss_pred             Ee-C-----CCcEEEEEccCCCeeEEEEcc------cccceEeEEEcCCCCEE-EEEE---CCCcEEEEeCCCCCCCCcc
Q 012679          242 GG-M-----DGLIINNDVRVRDHIVETYRG------HNQEVCGLKWSASGQQL-ASGG---NDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       242 g~-~-----dg~i~vwd~~~~~~~~~~~~~------h~~~v~~l~~spd~~~l-~sg~---~dg~i~iwd~~~~~~~~~~  305 (458)
                      .. .     ++.|.+||+.++.. +..+..      +...+..+++++++..+ ++..   .++.|.+||+.++..    
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~----  157 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA----  157 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE----
T ss_pred             EcCCCCcCCCCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE----
Confidence            43 3     57899999987653 333321      22356889999865554 5544   578999999876543    


Q ss_pred             eeeeeeccc-----------------------------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC---CCC--
Q 012679          306 QWLHRLEEH-----------------------------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH---TGA--  351 (458)
Q Consensus       306 ~~~~~~~~h-----------------------------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~---~~~--  351 (458)
                        ...+..|                             ...+..|+|+|++..++++..  ..+.|..++..   .+.  
T Consensus       158 --~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          158 --ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             --EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCC
T ss_pred             --EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCC
Confidence              1111110                             123578999999877777654  34466655532   111  


Q ss_pred             ------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC-CCCcEEEEEEcCCCCEEEEEeCC
Q 012679          352 ------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG-HTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       352 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                            .+...........++++++|..+++  ...++.|.+||..+++....... +...+.+++|.++|.++++.+..
T Consensus       234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          234 DAELGSKIERYSEKPICDGISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             HHHHHTTCEEEEECCSCSCEEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             hhhhhcceEecccCCCCceEEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence                  0112222335678999999987777  44678999999855654333322 24568999999999988887755


Q ss_pred             CcE
Q 012679          425 ETL  427 (458)
Q Consensus       425 g~i  427 (458)
                      +.+
T Consensus       312 ~~~  314 (343)
T 2qe8_A          312 HHS  314 (343)
T ss_dssp             GGS
T ss_pred             ccc
Confidence            444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=2e-09  Score=101.34  Aligned_cols=259  Identities=8%  Similarity=0.031  Sum_probs=163.9

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCc
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHR  226 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~  226 (458)
                      +....+..+.++.++ |+.+|. +++.  +..+...........+.  +..|.+++.++.|..+|.. ++....... ..
T Consensus        65 ~~~~~~g~l~v~t~~-l~~~d~-~g~~--~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~  136 (330)
T 3hxj_A           65 PSIGKDGTIYFGSDK-VYAINP-DGTE--KWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT-KK  136 (330)
T ss_dssp             CEETTTTEECCSSCE-EEEECC-CGGG--GGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-SS
T ss_pred             eEEecCCcEEEecCc-EEEECC-CCcE--EEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-CC
Confidence            333333333334444 888886 5543  22222222222223333  5568888889999999988 777666654 44


Q ss_pred             ccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc
Q 012679          227 SRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       227 ~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~  305 (458)
                      ..+.++..+ +..+..|+.++.|..+|.. +.. ...+......+.++...+++.+++. +  +.|..+| .++..    
T Consensus       137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~----  206 (330)
T 3hxj_A          137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE-KWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTE----  206 (330)
T ss_dssp             CCCSCCEECTTSCEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCE----
T ss_pred             ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE-eEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcE----
Confidence            445555665 5668888888999999988 443 3344444556777888778875544 4  7899999 54443    


Q ss_pred             eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-eEEEEEcCCCCeEEEEecCCCCc
Q 012679          306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                        +.........+.+++..+++ .+++..   .++.|..+| .+++.+..+..... +..+...+++...+   +..++.
T Consensus       207 --~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v---~t~~gg  276 (330)
T 3hxj_A          207 --KWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIYF---GSYDGH  276 (330)
T ss_dssp             --EEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEEE---ECTTCE
T ss_pred             --EEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEEE---ecCCCC
Confidence              33444445668888888764 444433   578888887 46777766655433 34455665665444   336778


Q ss_pred             EEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          385 LTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       385 i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      |..+|. +++.+..+......+.++...++|.+. .++.+|.+++......
T Consensus       277 l~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          277 LYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLEH  325 (330)
T ss_dssp             EEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC---
T ss_pred             EEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEecccc
Confidence            999995 777777776556667788888888754 5889999999876543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=3e-09  Score=105.75  Aligned_cols=287  Identities=13%  Similarity=0.098  Sum_probs=190.4

Q ss_pred             eeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEE-------------------ec-----------
Q 012679          131 RTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVT-------------------VD-----------  180 (458)
Q Consensus       131 ~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~-------------------~~-----------  180 (458)
                      ++--+|+-.++||.         +.++|..|.|+|+-+.+++.....-                   +.           
T Consensus         4 ~~~~~~g~~d~~~~---------f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~   74 (595)
T 1fwx_A            4 DGSVAPGQLDDYYG---------FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFL   74 (595)
T ss_dssp             CCCCCTTCCCSEEE---------EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHH
T ss_pred             cccCCCCCcccEEE---------EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhh
Confidence            34456777777763         4566777888888777665421110                   00           


Q ss_pred             ---C----CCCCEEEEEEcC-----CCCEEEEEec-CCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEe
Q 012679          181 ---D----ENGPVTSVNWAP-----DGRHIAIGLN-NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGG  243 (458)
Q Consensus       181 ---~----h~~~V~~v~~s~-----~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~  243 (458)
                         +    ..+.......|.     ||++|.+... ++.|.+.|+.+.++.+.+..........+++    ++.++++++
T Consensus        75 ~~~g~~~~~~gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~  154 (595)
T 1fwx_A           75 AANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNG  154 (595)
T ss_dssp             HHTTCSSCCCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEE
T ss_pred             hccCceecccCCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEec
Confidence               0    012233355554     8888888765 4579999999999888554323445667775    577888774


Q ss_pred             ------------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC----------------
Q 012679          244 ------------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN----------------  289 (458)
Q Consensus       244 ------------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg----------------  289 (458)
                                        .++.+.+.|..+.+...+...+.  ....++++|+|+++++.+.+.                
T Consensus       155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~  232 (595)
T 1fwx_A          155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  232 (595)
T ss_dssp             CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence                              24578999998765433333222  456788999999998888543                


Q ss_pred             ----------------------cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          290 ----------------------LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       290 ----------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                                            .|.|.|..+....   ..+..+.. .....++.++||+.++++++.  .+.+|.++|+
T Consensus       233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~---~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~  306 (595)
T 1fwx_A          233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS---LFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDV  306 (595)
T ss_dssp             EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC---SSEEEEEE-ESSCCCEEECTTSSEEEEECT--TSSBEEEEEG
T ss_pred             EEEeeccceeEeccCCCeeEECcEEEEeCcccCCc---eeEEEEec-CCCceEEEEcCCCCEEEEeCC--CCCeEEEEEC
Confidence                                  3556665542110   00112211 234568999999999999876  7889999999


Q ss_pred             CCCC------------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC----------ceeeEEEeCCCCc
Q 012679          348 HTGA------------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS----------MVKMAELSGHTSR  405 (458)
Q Consensus       348 ~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~----------~~~~~~~~~h~~~  405 (458)
                      .+.+            .+..+..+.....++|+++| .++++ -+-+++|.+||+..          .+.+..+..|..+
T Consensus       307 ~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          307 TRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             GGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             cccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence            9753            45667778889999999999 66655 56899999999977          5667777766543


Q ss_pred             E-----EEEEEcCCCCEEEEEeC---CCcE----------EEEecCCCC
Q 012679          406 V-----LFMAQSPDGCTVASAAA---DETL----------RFWNVFGAP  436 (458)
Q Consensus       406 V-----~~l~~spdg~~l~s~s~---Dg~i----------~iW~~~~~~  436 (458)
                      -     .++.++|||++|+++..   |..+          .++|+.+++
T Consensus       385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            2     12345899999998864   4332          789996544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.19  E-value=2.8e-09  Score=110.83  Aligned_cols=267  Identities=13%  Similarity=0.149  Sum_probs=165.2

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC---CCCEEEEEe------cCCeEEEEeCCCceeeEE
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP---DGRHIAIGL------NNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~---~g~~la~g~------~dg~v~iwd~~~~~~~~~  220 (458)
                      ..+.+++++.|+.|+.+|..+|+..-......+......+..+|   ++ .++++.      .+|.|..||..+|+.+..
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            34677888889999999999999733332210111111111222   44 455554      368999999999999887


Q ss_pred             ecCCC-c-----------------------------ccEEEEEe--CCCeEEEEeCCCc-------------------EE
Q 012679          221 LRGGH-R-----------------------------SRVGSLAW--NNHILTTGGMDGL-------------------II  249 (458)
Q Consensus       221 ~~~~~-~-----------------------------~~v~~l~~--~~~~l~sg~~dg~-------------------i~  249 (458)
                      +.... .                             .....+++  ...+++.+..++.                   |.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            75210 0                             00113455  4578888887763                   99


Q ss_pred             EEEccCCCeeEEEEcc-cc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcce-----eeeeec-
Q 012679          250 NNDVRVRDHIVETYRG-HN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQ-----WLHRLE-  312 (458)
Q Consensus       250 vwd~~~~~~~~~~~~~-h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~-  312 (458)
                      .+|.++++..-..-.. |.       .++.......+|+   .++.++.+|.++++|..+++......     +...+. 
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            9999988764332221 21       1222222223565   78899999999999998887521000     000000 


Q ss_pred             ----------------cccc-----------ceeEEEecCCCCcEEEEeC------------------------C-----
Q 012679          313 ----------------EHTS-----------AVKAIAWCPFQSNLLATGG------------------------G-----  336 (458)
Q Consensus       313 ----------------~h~~-----------~v~~l~~~p~~~~ll~s~~------------------------g-----  336 (458)
                                      ....           .-..++++|+...+++...                        |     
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM  438 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence                            0000           0123678886554444210                        0     


Q ss_pred             -------------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          337 -------------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       337 -------------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                                   ..++.|+.||+.+|+.+..+..+..+..-.+...+..+++  |..|+.|+.||..+++.+.+++...
T Consensus       439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQPAAS  516 (689)
T ss_dssp             CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeeeCCC
Confidence                         0147899999999999999887766655566777888877  5689999999999999999887543


Q ss_pred             Cc-EEEEEEcCCCCEEE
Q 012679          404 SR-VLFMAQSPDGCTVA  419 (458)
Q Consensus       404 ~~-V~~l~~spdg~~l~  419 (458)
                      +. ..-+.|..+|+..+
T Consensus       517 ~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          517 GVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             CCCSCCEEEEETTEEEE
T ss_pred             CcccCceEEEECCEEEE
Confidence            22 23466677887443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=1.3e-08  Score=95.08  Aligned_cols=217  Identities=12%  Similarity=0.086  Sum_probs=140.5

Q ss_pred             ceeeccC-CC-eEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          145 NLLDWGS-SN-VLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       145 ~~~~~~~-~~-~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      ....|++ ++ ++.+. .++.|+.|+. +++..   .+..+...+..++++++|+++++...++.|.+|+.. ++.....
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~  122 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLV  122 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE---EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE---EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEE
Confidence            4566766 34 44444 5789999998 55542   223345679999999999976665566789999976 5432221


Q ss_pred             c---CCCcccEEEEEeC--CCeEEE----EeC-------------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679          222 R---GGHRSRVGSLAWN--NHILTT----GGM-------------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       222 ~---~~~~~~v~~l~~~--~~~l~s----g~~-------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                      .   ......+..++++  +.++++    |..             .+.|..+|..++...  .+. ......+++|+||+
T Consensus       123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~~-~~~~p~gl~~spdg  199 (305)
T 3dr2_A          123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RMA-DLDHPNGLAFSPDE  199 (305)
T ss_dssp             CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EEE-EESSEEEEEECTTS
T ss_pred             eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EEe-cCCCCcceEEcCCC
Confidence            1   1111345667774  666665    332             256777777555421  222 34557889999999


Q ss_pred             CEEEEEECC------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          280 QQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       280 ~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      +.|+.+...      +.|.+||+..... ...  .............+++.+++. +.++.   .+ .|.+||. .++.+
T Consensus       200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~--~~~~~~~~~~pdgi~~d~~G~-lwv~~---~~-gv~~~~~-~g~~~  270 (305)
T 3dr2_A          200 QTLYVSQTPEQGHGSVEITAFAWRDGAL-HDR--RHFASVPDGLPDGFCVDRGGW-LWSSS---GT-GVCVFDS-DGQLL  270 (305)
T ss_dssp             SEEEEEECCC---CCCEEEEEEEETTEE-EEE--EEEECCSSSCCCSEEECTTSC-EEECC---SS-EEEEECT-TSCEE
T ss_pred             CEEEEEecCCcCCCCCEEEEEEecCCCc-cCC--eEEEECCCCCCCeEEECCCCC-EEEec---CC-cEEEECC-CCCEE
Confidence            988777665      7899999865431 000  011111234456789999766 54432   33 4999998 68888


Q ss_pred             EEEeCCCCeEEEEEcCCCCeEEEEe
Q 012679          354 NSVDTGSQVCALLWNKNERELLSSH  378 (458)
Q Consensus       354 ~~~~~~~~v~~~~~s~~~~~l~~~~  378 (458)
                      ..+.....+.+++|.++++.|++++
T Consensus       271 ~~~~~~~~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          271 GHIPTPGTASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             EEEECSSCCCEEEECTTSCEEEEEE
T ss_pred             EEEECCCceeEEEEeCCCCEEEEEc
Confidence            8887777789999999998888864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=3.1e-11  Score=116.15  Aligned_cols=258  Identities=14%  Similarity=0.060  Sum_probs=140.9

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG  230 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  230 (458)
                      .+.+++++.|+.|+.||..+|+.  +.++..  +.+.+..+..++..+++++.||.|+.||..+++.+..+.......+.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCE--EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCE--EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            46788888999999999999987  445544  44555556677878888889999999999999887766531111110


Q ss_pred             -EEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          231 -SLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       231 -~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                       +... .+..+++|+.++.|+.||.++++.. ..+..+.    ...++|++..+++++.|+.|+.||..+++..      
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------  153 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ-QTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------  153 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC------
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCCcEE-EEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE------
Confidence             1111 4567788889999999999987653 3333332    2345678889999999999999999888752      


Q ss_pred             eeecccccceeEEEecCCC---CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEE-EEEcCCCCeEEEEecCCCCc
Q 012679          309 HRLEEHTSAVKAIAWCPFQ---SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCA-LLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       309 ~~~~~h~~~v~~l~~~p~~---~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~g~~d~~  384 (458)
                      ..+..+.  ....++.++.   ..+++. +  .|+.|+.||..+|+.+.......++.. ..+++++...+......++.
T Consensus       154 W~~~~~~--~~~~~~~~~~~~~~~v~~~-~--~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~  228 (369)
T 2hz6_A          154 WNATYFD--YAASLPEDDVDYKMSHFVS-N--GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVET  228 (369)
T ss_dssp             CEEEEEE--ECCBCCCCCTTCCCCEEEE-E--TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHH
T ss_pred             EeEeccc--ccCccccCCccccceEEEE-C--CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeecccc
Confidence            2221111  1223333322   445543 3  799999999999999998887777654 33444543221000001234


Q ss_pred             EEEEeCCCce----eeEEEeCCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEecC
Q 012679          385 LTLWKYPSMV----KMAELSGHTSRVLFMAQSP--DGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       385 i~iwd~~~~~----~~~~~~~h~~~V~~l~~sp--dg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++.+|..+++    .+..+... ..+.    +|  .+..|+.++.||.|+.++..
T Consensus       229 l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          229 LRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred             eeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCcc
Confidence            5555555554    33322211 1111    22  23467778888988888876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.17  E-value=4.5e-08  Score=94.12  Aligned_cols=252  Identities=14%  Similarity=0.164  Sum_probs=159.4

Q ss_pred             EEEEEECCC-----CCeeeEEEecCCCCCEEEEEE-----------c--CCCCEEEE-EecCCeEEEEeCCCc----eee
Q 012679          162 TVYLWDASD-----GTTSELVTVDDENGPVTSVNW-----------A--PDGRHIAI-GLNNCQVQLWDSTAN----RQL  218 (458)
Q Consensus       162 ~v~iwd~~~-----~~~~~~~~~~~h~~~V~~v~~-----------s--~~g~~la~-g~~dg~v~iwd~~~~----~~~  218 (458)
                      .|.+.|++.     +++.....+..-.+....+.|           +  +++++|++ |..++.|.|+|+.+.    +..
T Consensus        44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~  123 (462)
T 2ece_A           44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII  123 (462)
T ss_dssp             EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred             eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence            566667665     566444455443445556666           6  78888766 456778999999766    666


Q ss_pred             EEec------CCCcccEEEEEe--CCCeEEEEeCC------CcEEEEEccCCCeeEEEEccc--c-cceEeEEEcCCCCE
Q 012679          219 RTLR------GGHRSRVGSLAW--NNHILTTGGMD------GLIINNDVRVRDHIVETYRGH--N-QEVCGLKWSASGQQ  281 (458)
Q Consensus       219 ~~~~------~~~~~~v~~l~~--~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~h--~-~~v~~l~~spd~~~  281 (458)
                      +++.      ......-..+..  ++ +++++..+      |.|.++|..+.+. +..+...  . .--..+.|+|+++.
T Consensus       124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~  201 (462)
T 2ece_A          124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEV  201 (462)
T ss_dssp             EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTE
T ss_pred             eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE-EEEEccCCCCccccceEEECCCCCE
Confidence            6662      001112233333  45 66665554      7899999987764 4555421  1 22345888999998


Q ss_pred             EEEEE-------------------CCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEe--cCCCCcEEEEeC---
Q 012679          282 LASGG-------------------NDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAW--CPFQSNLLATGG---  335 (458)
Q Consensus       282 l~sg~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~p~~~~ll~s~~---  335 (458)
                      +++..                   .+.+|.+||+.+.+.      +.++...  ......+.|  +|++...++++.   
T Consensus       202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~  275 (462)
T 2ece_A          202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL  275 (462)
T ss_dssp             EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET
T ss_pred             EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeec
Confidence            88874                   368999999987543      4444331  123344544  998887777641   


Q ss_pred             CCCCCeEEEEECCCCCe--eEEE--eC-----------------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC---
Q 012679          336 GGGDRCIKFWNTHTGAC--LNSV--DT-----------------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP---  391 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~--~~~~--~~-----------------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~---  391 (458)
                      -..+++|.+|....++.  .+.+  ..                 +.....+.+++++++|+++.- ..+.|.+||+.   
T Consensus       276 ~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~d~VavfdV~d~~  354 (462)
T 2ece_A          276 KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GIGEVRQYDISNPF  354 (462)
T ss_dssp             TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TTTEEEEEECSSTT
T ss_pred             cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-CCCEEEEEEecCCC
Confidence            00345777666554431  1111  11                 245788999999999999854 56899999985   


Q ss_pred             CceeeEEEeCCC--------------CcEEEEEEcCCCCEEEEEe
Q 012679          392 SMVKMAELSGHT--------------SRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       392 ~~~~~~~~~~h~--------------~~V~~l~~spdg~~l~s~s  422 (458)
                      +.+.+..+....              +....++++|||++|+++.
T Consensus       355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            345555553220              1357899999999999887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=2.8e-08  Score=103.05  Aligned_cols=282  Identities=11%  Similarity=0.072  Sum_probs=179.3

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC----------E-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGP----------V-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~----------V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      .+.+++++.++.|+.+|..+|+.  +.++......          + ..+++  ++..+++++.||.|..+|..+|+.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChh--ceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            36677888899999999999987  5554322110          0 11222  35678889999999999999999988


Q ss_pred             EecCCCc---ccEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEcc--c---------------------
Q 012679          220 TLRGGHR---SRVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRG--H---------------------  266 (458)
Q Consensus       220 ~~~~~~~---~~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~--h---------------------  266 (458)
                      .+.....   ..+. .....+..++.+..      +|.|..+|.++++..-.....  .                     
T Consensus       142 ~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             eeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            8764211   1111 11122445555543      589999999988764333210  0                     


Q ss_pred             -------ccceEeEEEcCCCCEEEEEECCCc-------------------EEEEeCCCCCCCCcceeeeeecccc-----
Q 012679          267 -------NQEVCGLKWSASGQQLASGGNDNL-------------------LHIWDRSMASSNSVTQWLHRLEEHT-----  315 (458)
Q Consensus       267 -------~~~v~~l~~spd~~~l~sg~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~h~-----  315 (458)
                             ......+++.|+..+++.++.++.                   |..+|..+++.    .+......|.     
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~----~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL----AWHYQVTPGDSWDFT  297 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE----EEEEESSTTCCSCCC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce----eeEeecCCCcccccc
Confidence                   011234788888888888877663                   89999988875    2223322232     


Q ss_pred             --cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------------C-----------------
Q 012679          316 --SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------------Q-----------------  361 (458)
Q Consensus       316 --~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------------~-----------------  361 (458)
                        .+.....+..++.  .+++.++  .+|.++++|..+|+.+.......             +                 
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p  375 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP  375 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred             CCCCcEEEEeccCCcEEEEEEEEC--CCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence              1222122222333  2466655  89999999999999885443211             0                 


Q ss_pred             -------eEEEEEcCCCCeEEEEe----------------------c------------CCCCcEEEEeCCCceeeEEEe
Q 012679          362 -------VCALLWNKNERELLSSH----------------------G------------FTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       362 -------v~~~~~s~~~~~l~~~~----------------------g------------~~d~~i~iwd~~~~~~~~~~~  400 (458)
                             -..++++|+...+++..                      |            ..+|.|..||..+++.+.+..
T Consensus       376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~  455 (668)
T 1kv9_A          376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP  455 (668)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred             CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence                   11256777766665421                      1            123789999999999988776


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA  443 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~  443 (458)
                      .+. .+....+...+.+++.++.||.|+.||..+++.+.+...
T Consensus       456 ~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          456 YPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             ESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            433 233334444677899999999999999999988776543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=6.6e-11  Score=113.86  Aligned_cols=203  Identities=13%  Similarity=0.014  Sum_probs=113.7

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEE--eCCCeEEEEeCCCcEEEEEccCCCeeEEEEccccc-ce
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLA--WNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQ-EV  270 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~-~v  270 (458)
                      ++..+++++.||.|+.||..+|+.+..+..   ..+.+..  .++..+++++.||.|+.||..+++.. ..+..+.. .+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-TKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCS-EECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-eeeeccCcccc
Confidence            578899999999999999999999988874   2333222  24667888889999999999877642 22222211 11


Q ss_pred             Ee-EEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          271 CG-LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       271 ~~-l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .+ ..+. ++..+++|+.|+.|+.||..+++.      +..+..+.    ...++|++..+++ ++  .|+.|+.||..+
T Consensus        84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~------~w~~~~~~----~~~~~p~~~~v~~-~~--~dg~v~a~d~~t  149 (369)
T 2hz6_A           84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEK------QQTLSSAF----ADSLSPSTSLLYL-GR--TEYTITMYDTKT  149 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC--------------------------------EEE-EE--EEEEEECCCSSS
T ss_pred             ccCceEe-cCCEEEEEeCCCEEEEEECCCCcE------EEEecCCC----cccccccCCEEEE-Ee--cCCEEEEEECCC
Confidence            11 1111 455778888899999999998876      33433332    2345665554544 43  789999999999


Q ss_pred             CCeeEEEeCCCCeEEEEEcCCC---CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE
Q 012679          350 GACLNSVDTGSQVCALLWNKNE---RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT  417 (458)
Q Consensus       350 ~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~  417 (458)
                      |+.+..+.... .....+..+.   ..+++  +..+|.|..||..+++.+.++......+....++++|..
T Consensus       150 G~~~W~~~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          150 RELRWNATYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             SSCCCEEEEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             CCEEEeEeccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            99876654321 1222233321   44555  347899999999999998887643333333455666643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.09  E-value=2e-09  Score=101.22  Aligned_cols=257  Identities=13%  Similarity=0.082  Sum_probs=166.7

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG  230 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  230 (458)
                      .+.+++++.++.|+.|| .+++.  +.....+...+.++...++|. |.+++.+  |..+|. +++.+..+.. ......
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g~~--~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~-~~~~~~  101 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDGSV--KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT-KKAIVS  101 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTSCE--EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC------C
T ss_pred             CCeEEEEcCCCEEEEEC-CCCcE--EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC-CCCccc
Confidence            35677777788999999 88876  443333344467777777775 5555555  888886 6665544432 222222


Q ss_pred             EEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee
Q 012679          231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR  310 (458)
Q Consensus       231 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  310 (458)
                      .....+..|..++.++.|..+|.. +.. ......+...+.++...+++. +..++.++.|..+|.. +..      +..
T Consensus       102 ~~~~~~~~l~v~t~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~------~~~  171 (330)
T 3hxj_A          102 DFTIFEDILYVTSMDGHLYAINTD-GTE-KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE------KWR  171 (330)
T ss_dssp             CEEEETTEEEEECTTSEEEEECTT-SCE-EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE------EEE
T ss_pred             CceEECCEEEEEecCCEEEEEcCC-CCE-EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE------eEE
Confidence            233337778889999999999987 543 334444455566777777776 5567788999999987 443      333


Q ss_pred             ecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEe
Q 012679          311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       311 ~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      +......+.++...+++. +++.    . +.|..+| .+++.+...... ..+.++...+++...+.+   .++.|..++
T Consensus       172 ~~~~~~~~~~~~~d~~g~-l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t---~~~gl~~~~  241 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGT-IYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS---LDGHLYAIN  241 (330)
T ss_dssp             EECSSCCCSCCEECTTCC-EEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE---TTTEEEEEC
T ss_pred             EecCCCceeeeEEcCCCE-EEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc---CCCeEEEEC
Confidence            434455677777766544 4442    2 7899999 788877766543 457788888887666542   467888887


Q ss_pred             CCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          390 YPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       390 ~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                       .+++.+..+......+..+.+.++|. |..++.+|.|..+|. .+...
T Consensus       242 -~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          242 -PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             -TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEE
T ss_pred             -CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEE
Confidence             46666666655544455566666665 556778888988885 44433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.08  E-value=4.9e-08  Score=97.12  Aligned_cols=234  Identities=9%  Similarity=0.003  Sum_probs=161.1

Q ss_pred             eEEEEc-CCEEEEEECCCCCeeeEEEecCCCCCEEEEEE-c-CCCCEEEEEe------------------cCCeEEEEeC
Q 012679          154 VLAIAL-GSTVYLWDASDGTTSELVTVDDENGPVTSVNW-A-PDGRHIAIGL------------------NNCQVQLWDS  212 (458)
Q Consensus       154 ~la~~~-d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~-s-~~g~~la~g~------------------~dg~v~iwd~  212 (458)
                      ++.... ++.|.+.|+.+.++..+.++.. ...+..+++ + |+++++++++                  .++.+.++|.
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~  182 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  182 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred             EEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence            344333 5679999999998866667654 345889998 5 9999999885                  3457999999


Q ss_pred             CCceeeEEecCCCcccEEEEEeCCCeEEEEeCCC--------------------------------------cEEEEEcc
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDG--------------------------------------LIINNDVR  254 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg--------------------------------------~i~vwd~~  254 (458)
                      ++.+.+.++..+..-.-..+..+++++++.+.+.                                      .|.+.|.+
T Consensus       183 ~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~  262 (595)
T 1fwx_A          183 DKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR  262 (595)
T ss_dssp             TTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred             CCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence            9999888877422333334445677777766443                                      46677776


Q ss_pred             C--CCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCC------CCCcceeeeeecccccceeEEEecC
Q 012679          255 V--RDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMAS------SNSVTQWLHRLEEHTSAVKAIAWCP  325 (458)
Q Consensus       255 ~--~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~p  325 (458)
                      +  +...+..+.. .....++.++|||+++++++ .+++|.++|+.+..      ............ -......++|+|
T Consensus       263 ~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~  340 (595)
T 1fwx_A          263 KEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG  340 (595)
T ss_dssp             GGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT
T ss_pred             ccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC
Confidence            5  3221223322 23567899999999887665 58899999988542      100011122222 234567899999


Q ss_pred             CCCcEEEEeCCCCCCeEEEEECCC----------CCeeEEEeCCCCeEEEE------EcCCCCeEEEEecCCCCcE----
Q 012679          326 FQSNLLATGGGGGDRCIKFWNTHT----------GACLNSVDTGSQVCALL------WNKNERELLSSHGFTQNQL----  385 (458)
Q Consensus       326 ~~~~ll~s~~g~~d~~i~lwd~~~----------~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~g~~d~~i----  385 (458)
                      +| +++++..  .|+.|..||+.+          .+.+.+++.+.+.-...      .+|+|++|+++..+....+    
T Consensus       341 dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~g  417 (595)
T 1fwx_A          341 RG-NAYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVG  417 (595)
T ss_dssp             TS-EEEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCC
T ss_pred             CC-eEEEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCC
Confidence            98 7777776  899999999987          66788888877764343      4799999999988775555    


Q ss_pred             -------EEEeCCCc
Q 012679          386 -------TLWKYPSM  393 (458)
Q Consensus       386 -------~iwd~~~~  393 (458)
                             .++|+..+
T Consensus       418 p~~~~~~ql~dis~~  432 (595)
T 1fwx_A          418 PLKPENDQLIDISGD  432 (595)
T ss_dssp             SSCCEEEEEEECSSS
T ss_pred             CCCCCcceEEEcCCC
Confidence                   88998543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=1.5e-07  Score=85.03  Aligned_cols=193  Identities=10%  Similarity=0.097  Sum_probs=135.7

Q ss_pred             CEEEEEEcCCCCEEEEEec---CCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEE-EeCCCcEEEEEccCCCeeE
Q 012679          185 PVTSVNWAPDGRHIAIGLN---NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTT-GGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s-g~~dg~i~vwd~~~~~~~~  260 (458)
                      ....+.|++++ .|.+++.   ++.|.++|+.+++.+..+..+.......++++++.|+. .-.++.+.++|..+.+. +
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v-~   99 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN-I   99 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE-E
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE-E
Confidence            46899999986 4555442   57999999999999998764233334467776655554 45678999999987664 4


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cc---cceeEEEecCCCCcEEEEeC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HT---SAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ..+......  ...+++||+.++++..++.|.++|..+.+.      +..+.-  +.   ..+..+.|. ++ .+++...
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v------~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~  169 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKL------IKKHNVKYNGHRVIRLNELEYI-NG-EVWANIW  169 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCE------EEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcE------EEEEEECCCCcccccceeEEEE-CC-EEEEecC
Confidence            445322122  233556888777777789999999887665      333321  11   135677887 44 6777664


Q ss_pred             CCCCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          336 GGGDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                        .++.|.+.|..+++.+..++..              ...+.++|+|+++.++++.+ ..+.+.+.++..
T Consensus       170 --~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~~  237 (266)
T 2iwa_A          170 --QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLHL  237 (266)
T ss_dssp             --TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEEE
T ss_pred             --CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEec
Confidence              6789999999999999999763              35689999999999888744 567777777644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.06  E-value=6.7e-08  Score=98.20  Aligned_cols=281  Identities=10%  Similarity=0.047  Sum_probs=174.7

Q ss_pred             CCeEEEEc-CCEEEEEEC-CCCCeeeEEEecCCCC-C---------E-EEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          152 SNVLAIAL-GSTVYLWDA-SDGTTSELVTVDDENG-P---------V-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       152 ~~~la~~~-d~~v~iwd~-~~~~~~~~~~~~~h~~-~---------V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      +.+++++. ++.|+-+|. .+|+.  +.+...... .         + ..++.  ++..+++++.|+.|..+|..+++.+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKI--VWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccE--EEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            55666666 789999999 89987  444332111 0         0 11222  3567888999999999999999998


Q ss_pred             EEecCCC-c--ccEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEccccc--------------------
Q 012679          219 RTLRGGH-R--SRVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRGHNQ--------------------  268 (458)
Q Consensus       219 ~~~~~~~-~--~~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h~~--------------------  268 (458)
                      ....... .  ..+. .....+..++.++.      +|.|..+|.++++..-+.......                    
T Consensus       139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~  218 (571)
T 2ad6_A          139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence            8765321 0  0111 11112455666655      799999999988764332221100                    


Q ss_pred             -----------------ceEeEEEcCCCCEEEEEECC----------------CcEEEEeCCCCCCCCcceeeeeecccc
Q 012679          269 -----------------EVCGLKWSASGQQLASGGND----------------NLLHIWDRSMASSNSVTQWLHRLEEHT  315 (458)
Q Consensus       269 -----------------~v~~l~~spd~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~h~  315 (458)
                                       ....+++.++...+..++.+                +.|..+|..+++.    .+......|.
T Consensus       219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~----~W~~~~~~~d  294 (571)
T 2ad6_A          219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA----KWGYQKTPHD  294 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE----EEEEESSTTC
T ss_pred             cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE----EEEecCCCCc
Confidence                             00235666766677666532                2589999988765    2223332221


Q ss_pred             --------cceeEEEecCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC--------------e---------
Q 012679          316 --------SAVKAIAWCPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ--------------V---------  362 (458)
Q Consensus       316 --------~~v~~l~~~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~--------------v---------  362 (458)
                              .++. +...+++.  .+++.++  .+|.++++|..+|+.+..+.....              +         
T Consensus       295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~  371 (571)
T 2ad6_A          295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM  371 (571)
T ss_dssp             SSCCCCCCCCEE-EEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred             ccccccCCCCEE-EecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence                    1211 12223443  4556655  899999999999999887654321              1         


Q ss_pred             -----------------EEEEEcCCCCeEEEEec-----------------------------------CCCCcEEEEeC
Q 012679          363 -----------------CALLWNKNERELLSSHG-----------------------------------FTQNQLTLWKY  390 (458)
Q Consensus       363 -----------------~~~~~s~~~~~l~~~~g-----------------------------------~~d~~i~iwd~  390 (458)
                                       ..++++|+...+++.+.                                   ..++.|..||.
T Consensus       372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~  451 (571)
T 2ad6_A          372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL  451 (571)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred             CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence                             23567887777766431                                   13578999999


Q ss_pred             CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       391 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                      .+++.+.++... ..+....+...+..++.++.||.|+.||..+++.+.+....
T Consensus       452 ~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          452 TTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            999988877532 22222222334567777999999999999999888765443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.04  E-value=1.2e-08  Score=106.56  Aligned_cols=203  Identities=10%  Similarity=0.071  Sum_probs=134.7

Q ss_pred             CcccEEEEEe--CCCeEEEE-----eCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCc-------
Q 012679          225 HRSRVGSLAW--NNHILTTG-----GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL-------  290 (458)
Q Consensus       225 ~~~~v~~l~~--~~~~l~sg-----~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~-------  290 (458)
                      +...+..++|  ++++|+.+     +....|+++|+.+++.....+..  .....++|+ |++.|+.++.+..       
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4456777788  46766643     22357999999988753332221  123578999 9999999988743       


Q ss_pred             ------EEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeC-CCCCCeEEEEECCCCC-eeEEEeCC-C
Q 012679          291 ------LHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGG-GGGDRCIKFWNTHTGA-CLNSVDTG-S  360 (458)
Q Consensus       291 ------i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~-g~~d~~i~lwd~~~~~-~~~~~~~~-~  360 (458)
                            |++|++.+....  ...+..... |...+..+.|+|++..++++.. +..+..|+++|+.++. ....+... .
T Consensus       204 ~~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQED--DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             -CCCCEEEEEETTSCGGG--CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred             cCCCcEEEEEECCCCccc--ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence                  999998776431  112333333 4455778999999998877653 2344689999998764 33444333 3


Q ss_pred             CeEEEEEcCCCCeEEEEecCC--CCcEEEEeCCCcee--eEEEeCCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEecC
Q 012679          361 QVCALLWNKNERELLSSHGFT--QNQLTLWKYPSMVK--MAELSGHTSRVLFMAQSPDGCTVASAAADE---TLRFWNVF  433 (458)
Q Consensus       361 ~v~~~~~s~~~~~l~~~~g~~--d~~i~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iW~~~  433 (458)
                      ..... |++++..++..+...  .+.|.++++.++..  ...+..|...+.  .|+++++.|+....++   .|++|++.
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            33333 777777777654322  46899999987654  345667776665  8999999887776544   68899887


Q ss_pred             CC
Q 012679          434 GA  435 (458)
Q Consensus       434 ~~  435 (458)
                      ++
T Consensus       359 g~  360 (693)
T 3iuj_A          359 GK  360 (693)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.04  E-value=1.5e-08  Score=96.71  Aligned_cols=226  Identities=9%  Similarity=-0.074  Sum_probs=140.7

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEe----------CCCcEEEEEccCCCeeEEEEccc-------
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGG----------MDGLIINNDVRVRDHIVETYRGH-------  266 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~h-------  266 (458)
                      .|.++|..+++.+.++..+.. +  .+.+  +++.++++.          .++.|.+||+.+.+. +..+...       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCcccccc
Confidence            889999999999999987444 3  4555  677777775          478899999998875 4444322       


Q ss_pred             ccceEeEEEcCCCCEEEEEEC--CCcEEE--EeCCCCCCCCcceeeeeecccccceeEEEec------------------
Q 012679          267 NQEVCGLKWSASGQQLASGGN--DNLLHI--WDRSMASSNSVTQWLHRLEEHTSAVKAIAWC------------------  324 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------  324 (458)
                      ......+.++|||++++++..  ++.|.+  +|..+...............+.  -.-++++                  
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~--~~~~~~~~dg~~~~vd~~~~~~~~~  200 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA--ATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET--TEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCC--eEEEEEcCCCCEEEEECccccccCC
Confidence            124568999999999998875  467888  9986510000000000000000  0001122                  


Q ss_pred             -------------------CCCCcEEEEeCCCCCCeEEEEECCCCC--eeEEEeCC-----------CCeEEEEEcCCCC
Q 012679          325 -------------------PFQSNLLATGGGGGDRCIKFWNTHTGA--CLNSVDTG-----------SQVCALLWNKNER  372 (458)
Q Consensus       325 -------------------p~~~~ll~s~~g~~d~~i~lwd~~~~~--~~~~~~~~-----------~~v~~~~~s~~~~  372 (458)
                                         +++..++++.   . +.+.+.|..++.  .+..+...           .....+.++++++
T Consensus       201 ~v~~~~t~~i~vg~~P~~~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~  276 (368)
T 1mda_H          201 IVGAQCTGAQNCSSQAAQANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             eEEEEeeeeeeCCCCccccccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence                               2222222221   2 556666665432  22222111           1111268999999


Q ss_pred             eEEEEec-C-C-----CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCCcccccC
Q 012679          373 ELLSSHG-F-T-----QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC-TVASAA-ADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       373 ~l~~~~g-~-~-----d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      .++++.. . .     .+.+.++|..+.+.+..+.... ...+|+|+|||+ .+++.. .++.|.++|+.+.+.+....
T Consensus       277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            9987643 2 1     2356699999999988876443 578999999998 566666 59999999999888775543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.00  E-value=2e-07  Score=89.63  Aligned_cols=217  Identities=13%  Similarity=0.102  Sum_probs=143.3

Q ss_pred             eEEEE-cCCEEEEEECCCC--CeeeEEEec------C-CCCCEEEEEEcCCCCEEEEEecC------CeEEEEeCCCcee
Q 012679          154 VLAIA-LGSTVYLWDASDG--TTSELVTVD------D-ENGPVTSVNWAPDGRHIAIGLNN------CQVQLWDSTANRQ  217 (458)
Q Consensus       154 ~la~~-~d~~v~iwd~~~~--~~~~~~~~~------~-h~~~V~~v~~s~~g~~la~g~~d------g~v~iwd~~~~~~  217 (458)
                      +++.+ .++.|+++|+.+.  +......++      . ....-..+..+|+| +++++..+      |.|.++|.++.+.
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v  176 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP  176 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence            44434 3678999998744  322233331      0 11245667889999 66666555      7899999999999


Q ss_pred             eEEecCC-Cccc-EEEEEe--CCCeEEEEe-------------------CCCcEEEEEccCCCeeEEEEcc--cccceEe
Q 012679          218 LRTLRGG-HRSR-VGSLAW--NNHILTTGG-------------------MDGLIINNDVRVRDHIVETYRG--HNQEVCG  272 (458)
Q Consensus       218 ~~~~~~~-~~~~-v~~l~~--~~~~l~sg~-------------------~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~  272 (458)
                      +.++..+ .... -..+.|  +++.+++..                   ....|.+||+.+++ .+.++.-  .......
T Consensus       177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~  255 (462)
T 2ece_A          177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALE  255 (462)
T ss_dssp             EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEE
T ss_pred             EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCCCCCccce
Confidence            9988742 2211 223555  467777774                   36899999998754 4555543  1233445


Q ss_pred             EEE--cCCCCEEEEEE------CCCcEEEEeCCCCCCCCcceeeee--ecc----------------cccceeEEEecCC
Q 012679          273 LKW--SASGQQLASGG------NDNLLHIWDRSMASSNSVTQWLHR--LEE----------------HTSAVKAIAWCPF  326 (458)
Q Consensus       273 l~~--spd~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~--~~~----------------h~~~v~~l~~~p~  326 (458)
                      +.|  +|+++++.+++      .+++|.+|....+..    ...+.  +..                -......|.++|+
T Consensus       256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----eEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            656  99999987776      466888776654221    11111  010                0235688999999


Q ss_pred             CCcEEEEeCCCCCCeEEEEECCC---CCeeEEEeCCC---------------CeEEEEEcCCCCeEEEEe
Q 012679          327 QSNLLATGGGGGDRCIKFWNTHT---GACLNSVDTGS---------------QVCALLWNKNERELLSSH  378 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~~---~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~  378 (458)
                      ++.|+++.-  ..+.|.++|+..   .+.+..+..++               ....+.++|+|++|+++.
T Consensus       332 GrfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999886  668999999863   35666666652               258899999999999975

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.99  E-value=2.4e-07  Score=94.15  Aligned_cols=282  Identities=9%  Similarity=0.021  Sum_probs=173.4

Q ss_pred             CCeEEEEc-CCEEEEEEC-CCCCeeeEEEecCCCC-----------CEEEEEEcCCCCE----EEEEecCCeEEEEeCCC
Q 012679          152 SNVLAIAL-GSTVYLWDA-SDGTTSELVTVDDENG-----------PVTSVNWAPDGRH----IAIGLNNCQVQLWDSTA  214 (458)
Q Consensus       152 ~~~la~~~-d~~v~iwd~-~~~~~~~~~~~~~h~~-----------~V~~v~~s~~g~~----la~g~~dg~v~iwd~~~  214 (458)
                      +.+++++. ++.|+-+|. .+|+.  +.+......           ....++++|.+..    |++++.|+.|..+|..+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~--lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTI--LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcE--EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            55666666 789999999 89987  444432211           0123455443444    88899999999999999


Q ss_pred             ceeeEEecCCCc---ccEE-EEEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEccccc----------------
Q 012679          215 NRQLRTLRGGHR---SRVG-SLAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRGHNQ----------------  268 (458)
Q Consensus       215 ~~~~~~~~~~~~---~~v~-~l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h~~----------------  268 (458)
                      |+.+........   ..+. .-...+..+++++      .+|.|+.+|.++++..-+.......                
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            999877653110   0111 1111234555555      3899999999988764333221110                


Q ss_pred             --------------------ce-EeEEEcCCCCEEEEEECC----------------CcEEEEeCCCCCCCCcceeeeee
Q 012679          269 --------------------EV-CGLKWSASGQQLASGGND----------------NLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       269 --------------------~v-~~l~~spd~~~l~sg~~d----------------g~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                                          .+ ..+++.++..++..+..+                +.|.-+|..+++.    .+..+.
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~----~W~~q~  296 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA----KFGYQK  296 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE----EEEEES
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce----eeEeec
Confidence                                00 134566777778777665                3789999988765    233333


Q ss_pred             cccc--------cceeEEEec-CCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC-------------------
Q 012679          312 EEHT--------SAVKAIAWC-PFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-------------------  361 (458)
Q Consensus       312 ~~h~--------~~v~~l~~~-p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~-------------------  361 (458)
                      ..|.        .++. +... .++.  .+++.++  .+|.++++|..+|+.+........                   
T Consensus       297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~  373 (599)
T 1w6s_A          297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE  373 (599)
T ss_dssp             STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred             CCCccccccCCCccEE-EeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence            3332        1121 1221 3343  4566555  899999999999998877653210                   


Q ss_pred             ---------------------eEEEEEcCCCCeEEEEe-------------------------------cC------CCC
Q 012679          362 ---------------------VCALLWNKNERELLSSH-------------------------------GF------TQN  383 (458)
Q Consensus       362 ---------------------v~~~~~s~~~~~l~~~~-------------------------------g~------~d~  383 (458)
                                           -..++++|+...+++..                               ..      ..|
T Consensus       374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G  453 (599)
T 1w6s_A          374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG  453 (599)
T ss_dssp             GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred             cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence                                 12356677666555421                               01      347


Q ss_pred             cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCC
Q 012679          384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSA  443 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~  443 (458)
                      .|..||+.+++.+.+.... .++..-.+...+..++.++.||.|+.||..+++.+.+...
T Consensus       454 ~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          454 QIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            8999999999988776421 1111111222566788899999999999999998877643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=7.8e-08  Score=91.31  Aligned_cols=192  Identities=12%  Similarity=0.038  Sum_probs=124.1

Q ss_pred             CCCCEEEEEEcCCCCEEEEEec-----CCeEEEEeCCCceeeEEecCC-----CcccEEEEEeC--CCe-EEEEe---CC
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLN-----NCQVQLWDSTANRQLRTLRGG-----HRSRVGSLAWN--NHI-LTTGG---MD  245 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~-----dg~v~iwd~~~~~~~~~~~~~-----~~~~v~~l~~~--~~~-l~sg~---~d  245 (458)
                      +...+..|+++++|+++++-..     ++.|.+||+.+++.+..+...     +...+..++++  +.. +++..   .+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            4568999999999886665544     578999999999877766531     22346778885  334 45544   67


Q ss_pred             CcEEEEEccCCCeeEEEEcccc-----------------------------cceEeEEEcCCCCEEEEEECCC-cEEEEe
Q 012679          246 GLIINNDVRVRDHIVETYRGHN-----------------------------QEVCGLKWSASGQQLASGGNDN-LLHIWD  295 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~~h~-----------------------------~~v~~l~~spd~~~l~sg~~dg-~i~iwd  295 (458)
                      +.|.+||+.++.. ...+.+|.                             ..+.+++|+||++.|+.+..++ .|..++
T Consensus       145 ~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          145 AALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             CEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            8999999976542 33332211                             2368899999999998887766 455554


Q ss_pred             CC---CCCCCCcceeee--eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC--CCCeEEEEEc
Q 012679          296 RS---MASSNSVTQWLH--RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCALLWN  368 (458)
Q Consensus       296 ~~---~~~~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~--~~~v~~~~~s  368 (458)
                      ..   ..... ..+...  ...++......+++++++ .++++..  .++.|.+||..+++.......  ...+..+++.
T Consensus       224 ~~~~~~~~~~-~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~--~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          224 SADLSNLQLT-DAELGSKIERYSEKPICDGISIDKDH-NIYVGDL--AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             HHHHTCTTCC-HHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEG--GGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             HHHhcCCCCC-hhhhhcceEecccCCCCceEEECCCC-CEEEEcc--CCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            32   11100 000000  111334456789999975 6666665  688999999866764433332  3458899999


Q ss_pred             CCCCeEEEEe
Q 012679          369 KNERELLSSH  378 (458)
Q Consensus       369 ~~~~~l~~~~  378 (458)
                      +++..++++.
T Consensus       300 ~~g~l~v~~~  309 (343)
T 2qe8_A          300 SDGYLYFDCN  309 (343)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCcEEEEeC
Confidence            9887766643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=3.1e-07  Score=82.98  Aligned_cols=193  Identities=12%  Similarity=0.054  Sum_probs=134.5

Q ss_pred             cceeeccC-CCeEEEEc---CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceee
Q 012679          144 LNLLDWGS-SNVLAIAL---GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQL  218 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~---d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~  218 (458)
                      ..-+.|++ +.++.++.   ++.|.++|..+++......+..+. ....+++.  |+.|.++. .++.+.++|..+.+.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            45677777 44444443   479999999999985555454332 23345554  55565554 5789999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc-c-cc---cceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR-G-HN---QEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~-h~---~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      .++..+ ...-..+++++..++.+..++.|.++|..+.+.. ..+. + +.   ..++.+.|. ++..++....++.|.+
T Consensus       100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            998753 2333558888887777778899999999876643 3332 2 11   236678888 7765555556899999


Q ss_pred             EeCCCCCCCCcceeeeeeccc-------------ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC
Q 012679          294 WDRSMASSNSVTQWLHRLEEH-------------TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG  350 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~  350 (458)
                      .|..+++.      +..+.-.             ......|+|+|++..+++++.  ..+.+.+.++...
T Consensus       177 ID~~tg~V------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~  238 (266)
T 2iwa_A          177 ISAKDGTL------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTTCCE------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred             EECCCCcE------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence            99998876      3333211             124589999999999999987  7788888887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.96  E-value=6.1e-07  Score=84.19  Aligned_cols=238  Identities=9%  Similarity=-0.050  Sum_probs=151.0

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC--C-----------------CcccEEEEEeC--CCeEEEE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG--G-----------------HRSRVGSLAWN--NHILTTG  242 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~--~-----------------~~~~v~~l~~~--~~~l~sg  242 (458)
                      ....+++|.++|+++.++..++.|..||..+++.. .+..  .                 ....+..++++  ...|+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            34677899999997888889999999998765432 2210  0                 11357788885  4667777


Q ss_pred             eCCCcEEEEEccCCCeeEEEEc----c-cccceEeEEEcC-CCCEEEEEEC-----------------CCcEEEEeCCCC
Q 012679          243 GMDGLIINNDVRVRDHIVETYR----G-HNQEVCGLKWSA-SGQQLASGGN-----------------DNLLHIWDRSMA  299 (458)
Q Consensus       243 ~~dg~i~vwd~~~~~~~~~~~~----~-h~~~v~~l~~sp-d~~~l~sg~~-----------------dg~i~iwd~~~~  299 (458)
                      ...+.|..+|..++.  +..+.    + .......+++.+ +|++.++-..                 ++.|..||...+
T Consensus        98 d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             ETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             ECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            666668888876432  12221    1 113467899999 9987766432                 367888887654


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC---CeeEEEeCCCCeEEEEEcCCCCeEEE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG---ACLNSVDTGSQVCALLWNKNERELLS  376 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~  376 (458)
                      ..       ..+.........++|+|++..++++..  ..+.|..|++...   .......... ...++++++|+..++
T Consensus       176 ~~-------~~~~~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          176 ET-------TLLLKELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             EE-------EEEEEEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred             EE-------EEeccCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence            32       111111234567999998877777755  5689999998752   2111112233 788999999987666


Q ss_pred             Eec--------CCCCcEEEEeCCCceeeEEEeCCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          377 SHG--------FTQNQLTLWKYPSMVKMAELSGHT----SRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       377 ~~g--------~~d~~i~iwd~~~~~~~~~~~~h~----~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      ..+        ...+.|..+|. .++.+..+....    ..++.+++ .+++++++....+.|..+++....
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence            533        11456888886 467666665432    34666766 466666666678889999875433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=3.5e-07  Score=94.78  Aligned_cols=281  Identities=14%  Similarity=0.125  Sum_probs=170.2

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeEEec
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+.+++++.++.|+.+|..+|+..-........ ....+.-+|  .+..++++..      +|.|..+|..+++.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            467778888999999999999973333322110 000111112  2345666644      5899999999999988775


Q ss_pred             CC--Ccc----------------------------cEEEEEe--CCCeEEEEeCCC-------------------cEEEE
Q 012679          223 GG--HRS----------------------------RVGSLAW--NNHILTTGGMDG-------------------LIINN  251 (458)
Q Consensus       223 ~~--~~~----------------------------~v~~l~~--~~~~l~sg~~dg-------------------~i~vw  251 (458)
                      ..  ...                            ....+++  ...+++.++.++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            31  100                            0012445  357788887765                   39999


Q ss_pred             EccCCCeeEEEEcc-cc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcce-----eeeeeccc-
Q 012679          252 DVRVRDHIVETYRG-HN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQ-----WLHRLEEH-  314 (458)
Q Consensus       252 d~~~~~~~~~~~~~-h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~h-  314 (458)
                      |.++++..-..-.. |.       .+.....+..+|+   .++.++.+|.++++|..+++......     +...+... 
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            99988764333222 22       2222223333665   68899999999999998887521000     00001000 


Q ss_pred             ccc------------------------eeEEEecCCCCcEEEEe---------------------------------CCC
Q 012679          315 TSA------------------------VKAIAWCPFQSNLLATG---------------------------------GGG  337 (458)
Q Consensus       315 ~~~------------------------v~~l~~~p~~~~ll~s~---------------------------------~g~  337 (458)
                      ..+                        -..++++|+...+++..                                 ...
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence            000                        01266777655444311                                 001


Q ss_pred             CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcE-EEEEEcCCCC
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRV-LFMAQSPDGC  416 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V-~~l~~spdg~  416 (458)
                      .++.|..||..+|+.+.............+...+..+++  |..++.|++||..+++.+..+....... .-+.+..+|+
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~  513 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence            348899999999999988877666555556667778887  5589999999999999999887543211 1233344666


Q ss_pred             -EEEEEeC--------------------CCcEEEEecCC
Q 012679          417 -TVASAAA--------------------DETLRFWNVFG  434 (458)
Q Consensus       417 -~l~s~s~--------------------Dg~i~iW~~~~  434 (458)
                       +++.++.                    .+.|.++.+..
T Consensus       514 ~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g  552 (668)
T 1kv9_A          514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG  552 (668)
T ss_dssp             EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred             EEEEEEecCCCccccccccccccccCCCCCeEEEEEcCc
Confidence             4554443                    35788888865

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.92  E-value=8.8e-07  Score=90.05  Aligned_cols=280  Identities=11%  Similarity=0.089  Sum_probs=171.4

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCC-E--------EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGP-V--------TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~-V--------~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +.+++++.++.|+-+|..+|+.  +.++...... .        ..++.  .+..+++++.++.|.-+|..+++.+....
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKR--LWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCE--EEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcE--EEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            5566666656699999999987  4443322110 0        11222  35678889999999999999999988766


Q ss_pred             CCCcc---cEE-E-EEeCC----C-eEEEEe------CCCcEEEEEccCCCeeEEEEccccc------------------
Q 012679          223 GGHRS---RVG-S-LAWNN----H-ILTTGG------MDGLIINNDVRVRDHIVETYRGHNQ------------------  268 (458)
Q Consensus       223 ~~~~~---~v~-~-l~~~~----~-~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h~~------------------  268 (458)
                      .....   .+. . +..++    . .+++++      .+|.|..+|..+++..-.. .....                  
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~-~~~~~~~~p~~~~~~~~~g~~g~  223 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR-PFVEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE-ESSTTCEEEETTEEEEESSCTTC
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec-CCCccccccccCccccccccccc
Confidence            42110   111 0 11222    2 566665      3789999999988754322 11000                  


Q ss_pred             -----------------------ceEeEEEcCCCCEEEEEEC--------------------C----CcEEEEeCCCCCC
Q 012679          269 -----------------------EVCGLKWSASGQQLASGGN--------------------D----NLLHIWDRSMASS  301 (458)
Q Consensus       269 -----------------------~v~~l~~spd~~~l~sg~~--------------------d----g~i~iwd~~~~~~  301 (458)
                                             .-..+++.|+..+++.+..                    |    +.|.-+|..+++.
T Consensus       224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~  303 (582)
T 1flg_A          224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence                                   0023566677777776663                    2    5799999988876


Q ss_pred             CCcceeeeeecccc--------cceeEEEec-CCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCe--------
Q 012679          302 NSVTQWLHRLEEHT--------SAVKAIAWC-PFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV--------  362 (458)
Q Consensus       302 ~~~~~~~~~~~~h~--------~~v~~l~~~-p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v--------  362 (458)
                          .+..+...|.        .++. +... .++.  .+++.++  .+|.++++|..+|+.+..+.....+        
T Consensus       304 ----~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  376 (582)
T 1flg_A          304 ----KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL  376 (582)
T ss_dssp             ----EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred             ----EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccc
Confidence                2333333332        1121 1111 3443  3566655  8999999999999998776543210        


Q ss_pred             --------------------------------------EEEEEcCCCCeEEEEec-------------------------
Q 012679          363 --------------------------------------CALLWNKNERELLSSHG-------------------------  379 (458)
Q Consensus       363 --------------------------------------~~~~~s~~~~~l~~~~g-------------------------  379 (458)
                                                            ..++++|+...+++...                         
T Consensus       377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  456 (582)
T 1flg_A          377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR  456 (582)
T ss_dssp             TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence                                                  13456666555554321                         


Q ss_pred             ------CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          380 ------FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       380 ------~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                            ...|.|..||+.+++.+.+..... ++..-.....+.+++.++.||.|+.||..+++.+.+...+
T Consensus       457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          457 IKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence                  135789999999999887765332 2211111224667888999999999999999988776543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=5e-06  Score=75.60  Aligned_cols=233  Identities=9%  Similarity=-0.010  Sum_probs=144.3

Q ss_pred             CCEEEEEecCCeEEEEeCCCceee-----EEecCCCcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEccc
Q 012679          195 GRHIAIGLNNCQVQLWDSTANRQL-----RTLRGGHRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYRGH  266 (458)
Q Consensus       195 g~~la~g~~dg~v~iwd~~~~~~~-----~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h  266 (458)
                      |.+|+.+.. +.|+.+++......     ..+.. ....+..++|+  +. ++++-...+.|..+++..... .......
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~   77 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQD   77 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTT
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECC
Confidence            345666554 47888887654321     11211 22456788885  34 445555678999999876542 2233233


Q ss_pred             ccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEE
Q 012679          267 NQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW  345 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lw  345 (458)
                      .....++++++++..|..+ ...+.|.++++.....      .............++++|++..++++..+...+.|..+
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence            3567899999976655544 4567899999865332      11111122456789999987888877642225789888


Q ss_pred             ECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          346 NTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       346 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      ++... ....+.  .......+++++++..|+.+. ...+.|.++++........+.+ ......++.. ++..+++...
T Consensus       152 ~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d-~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~  227 (267)
T 1npe_A          152 HMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVD-AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWK  227 (267)
T ss_dssp             ETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETT
T ss_pred             ecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEE-CCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECC
Confidence            87643 333332  234578999999988887764 3568999999976544433333 2334567764 3444444445


Q ss_pred             CCcEEEEecCCCCcccc
Q 012679          424 DETLRFWNVFGAPQVIS  440 (458)
Q Consensus       424 Dg~i~iW~~~~~~~~~~  440 (458)
                      .+.|..++..+++....
T Consensus       228 ~~~v~~~d~~~g~~~~~  244 (267)
T 1npe_A          228 TNSVIAMDLAISKEMDT  244 (267)
T ss_dssp             TTEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeCCCCCceEE
Confidence            68999999887665444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.87  E-value=9.3e-06  Score=75.51  Aligned_cols=239  Identities=11%  Similarity=0.012  Sum_probs=141.1

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCC-C-cEEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMD-G-LIINN  251 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-g-~i~vw  251 (458)
                      +..+.. ......++|+++|+++++-..++.|..||.... ....+.  .......++++  ++++++.... + .|..+
T Consensus        25 ~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           25 ITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             EEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             eEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence            444543 256789999999997666667899999997753 333333  33467888884  5655544332 2 46677


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc--ceeee--eecccccceeEEEecCCC
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV--TQWLH--RLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~h~~~v~~l~~~p~~  327 (458)
                      |..++......-.........++..+++..+++-..++.|+++|.........  ...+.  .....-.....+  +|++
T Consensus       101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            76655421111111222334555555555555554688999999764321000  00000  000111123444  7777


Q ss_pred             CcEEEEeCCCCCCeEEEEECCC-CCe--eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee--EEEeCC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHT-GAC--LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM--AELSGH  402 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~--~~~~~h  402 (458)
                      ..++++..  ..+.|..+++.. ++.  ...+........++++++|+.+++  ....+.|.+++.. ++..  ..+...
T Consensus       179 ~~lyv~d~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~  253 (306)
T 2p4o_A          179 NFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQG  253 (306)
T ss_dssp             TEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred             CEEEEEeC--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccc
Confidence            78888776  778999999875 332  122222245677899999987665  3357889999975 5442  223333


Q ss_pred             CCcEEEEEEc---CCCCEEEEEeCCC
Q 012679          403 TSRVLFMAQS---PDGCTVASAAADE  425 (458)
Q Consensus       403 ~~~V~~l~~s---pdg~~l~s~s~Dg  425 (458)
                      ...+++++|.   |++..|+.++..+
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCceEEEEecccCCCCEEEEECCCC
Confidence            3568999998   8987777666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.86  E-value=9.9e-07  Score=89.56  Aligned_cols=260  Identities=14%  Similarity=0.075  Sum_probs=156.4

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC--CEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeE
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG--PVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLR  219 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~--~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~  219 (458)
                      ..+.+++++.++.|+.+|..+|+..-...+..+..  .+.   -+|  .+..+++++.      +|.|..+|..+++.+.
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            34667777789999999999998743333332110  111   112  2345666665      7899999999999988


Q ss_pred             EecCCCcc-c-----------------------------------E-EEEEeC--CCeEEEEeCC---------------
Q 012679          220 TLRGGHRS-R-----------------------------------V-GSLAWN--NHILTTGGMD---------------  245 (458)
Q Consensus       220 ~~~~~~~~-~-----------------------------------v-~~l~~~--~~~l~sg~~d---------------  245 (458)
                      ++...... .                                   + ..++++  ...++.+..+               
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            77642111 0                                   0 123333  3556655532               


Q ss_pred             -CcEEEEEccCCCeeEEEEc-ccc--------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcceeeeeec
Q 012679          246 -GLIINNDVRVRDHIVETYR-GHN--------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQWLHRLE  312 (458)
Q Consensus       246 -g~i~vwd~~~~~~~~~~~~-~h~--------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  312 (458)
                       +.|..+|.++++..-..-. .|.        .++. +....+|+   .++.++.+|.++++|..+++....    ..+.
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~----~~~~  345 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA----EKVD  345 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE----EESS
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEee----eccc
Confidence             3589999998875433221 221        1221 22224674   577888999999999988765211    1111


Q ss_pred             c-----------cccce--------------------------eEEEecCCCCcEEEEeC--------------------
Q 012679          313 E-----------HTSAV--------------------------KAIAWCPFQSNLLATGG--------------------  335 (458)
Q Consensus       313 ~-----------h~~~v--------------------------~~l~~~p~~~~ll~s~~--------------------  335 (458)
                      .           ...++                          ..++++|+...+++...                    
T Consensus       346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~  425 (571)
T 2ad6_A          346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV  425 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence            0           00011                          24577776555554321                    


Q ss_pred             -----------C---CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679          336 -----------G---GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       336 -----------g---~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~  401 (458)
                                 +   ..++.|..||..+|+.+..+.....+........+..+++  +..++.|+.||..+++.+.++..
T Consensus       426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeC
Confidence                       0   1458999999999999988876655444444445666666  55899999999999999998864


Q ss_pred             CCCc-EEEEEEcCCCCEEE
Q 012679          402 HTSR-VLFMAQSPDGCTVA  419 (458)
Q Consensus       402 h~~~-V~~l~~spdg~~l~  419 (458)
                      .... -.-+.+..+|+.++
T Consensus       504 ~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          504 PSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             SSCCCSCCEEEEETTEEEE
T ss_pred             CCCcEeeeEEEEECCEEEE
Confidence            3221 11233556776444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.86  E-value=1.4e-06  Score=77.90  Aligned_cols=178  Identities=15%  Similarity=0.191  Sum_probs=123.8

Q ss_pred             EEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEE-eCCCcEEEEEccCCCeeEEE
Q 012679          186 VTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTG-GMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~  262 (458)
                      ...+.|+ ++.+..+++.+|  .|+++|+++++.++.+......--..++..++.|... -.++.+.+||..+.+. +..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~-~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ-VRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE-EEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE-EEE
Confidence            5788898 666666666666  8999999999999988752222234466655555444 5688999999988775 444


Q ss_pred             EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cc---cceeEEEecCCCCcEEEEeCCC
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HT---SAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      +.-. ..-.+++  +|++.|+.+..++.|.++|..+.+.      +..+.-  ..   ..+..+.|. + ..+++..-  
T Consensus       123 i~~~-~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v------~~~I~V~~~g~~~~~lNELe~~-~-G~lyan~w--  189 (262)
T 3nol_A          123 FNYD-GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTP------VRTITVTAHGEELPELNELEWV-D-GEIFANVW--  189 (262)
T ss_dssp             EECS-SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSE------EEEEECEETTEECCCEEEEEEE-T-TEEEEEET--
T ss_pred             EECC-CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeE------EEEEEeccCCccccccceeEEE-C-CEEEEEEc--
Confidence            4422 2223444  5677777666678899999888765      333322  12   233457776 3 45776654  


Q ss_pred             CCCeEEEEECCCCCeeEEEeCC-------------CCeEEEEEcCCCCeEEEEe
Q 012679          338 GDRCIKFWNTHTGACLNSVDTG-------------SQVCALLWNKNERELLSSH  378 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~~~~  378 (458)
                      .+..|.+.|..+|+.+..++..             .-.+.++|+|+++.|++++
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            6789999999999999988753             2458999999999998875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.83  E-value=2e-06  Score=76.15  Aligned_cols=193  Identities=13%  Similarity=0.078  Sum_probs=129.4

Q ss_pred             ceeeeCCCCCCccccceeeccCCCeEEEEcC---CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEE-EecCC
Q 012679          130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALG---STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNC  205 (458)
Q Consensus       130 ~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d---~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~-g~~dg  205 (458)
                      ..++..--+...-+..-+.++++.++.++..   +.|+.+|+.+++......+..+   .........++.|.. ...++
T Consensus         9 ~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X            9 YRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSSS
T ss_pred             eEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeCCEEEEEEeeCC
Confidence            3444432233344566778887666555543   4999999999998665555432   222222233445544 45678


Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcc--cc---cceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG--HN---QEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~--h~---~~v~~l~~spd~~  280 (458)
                      .+.+||..+.+.+.++..+  ..-..+++++..|+.+..++.|.++|..+... +..+.-  +.   ..++.+.|. +|+
T Consensus        86 ~v~v~D~~tl~~~~ti~~~--~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYP--GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEEEEETTTTEEEEEEECS--SCCCEEEECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCcCcEEEEEeCC--CCceEEeeCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCE
Confidence            9999999999999999852  33467788888787777899999999988764 333322  21   245567775 676


Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCcceeeeeec-------------ccccceeEEEecCCCCcEEEEeC
Q 012679          281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-------------EHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      .++..-.++.|.+.|..+++.      +..+.             ....-.+.||++|++..++++|-
T Consensus       162 lyanvw~s~~I~vIDp~tG~V------~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          162 LLANVWLTSRIARIDPASGKV------VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEECTTTCBE------EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCCE------EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            665555688999999998876      22221             11235688999999999999873

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.82  E-value=2.7e-05  Score=82.53  Aligned_cols=270  Identities=12%  Similarity=0.092  Sum_probs=178.6

Q ss_pred             cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec-----CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD-----DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~-----~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ..+.++.... +++..++.+ -|.+||..+++........     -....|.++...++|. |.+|+.++-|..|+..++
T Consensus       263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~  340 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN  340 (795)
T ss_dssp             SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred             CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence            3466666654 667777665 7999998877653332111     1235799999999887 567888778999987665


Q ss_pred             eeeEEec-----CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEc---------ccccceEeEEEcCCCC
Q 012679          216 RQLRTLR-----GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYR---------GHNQEVCGLKWSASGQ  280 (458)
Q Consensus       216 ~~~~~~~-----~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---------~h~~~v~~l~~spd~~  280 (458)
                      .......     .-....|.++..+ ...|..|+.++-|..||..++..  ..+.         .....|.++...++++
T Consensus       341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~  418 (795)
T 4a2l_A          341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKS  418 (795)
T ss_dssp             SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTT
T ss_pred             cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCC
Confidence            4322111     1124568999886 45688888888899999876542  2221         1235688999888888


Q ss_pred             EEEEEECCCcEEEEeCCCCCCCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE
Q 012679          281 QLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS  355 (458)
Q Consensus       281 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~  355 (458)
                      .|..|+.++-|.+||..++..       ..+.     .....|.++...+++...+.+    . +-|.+||..+++....
T Consensus       419 ~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          419 LVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAILPDGEGNLWLGT----L-SALVRFNPEQRSFTTI  486 (795)
T ss_dssp             EEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEEEECSSSCEEEEE----S-SCEEEEETTTTEEEEC
T ss_pred             EEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEEEECCCCCEEEEe----c-CceeEEeCCCCeEEEc
Confidence            677788878899999876543       1221     134578899988865544433    3 4588899887754432


Q ss_pred             EeC-------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-------CCCCcEEEEEEcCCCCEEEEE
Q 012679          356 VDT-------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-------GHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       356 ~~~-------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~  421 (458)
                      ...       ...|.++...+++...+.+   . +.|..|+..+.+.  .+.       .....|.++...++|.+.++.
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT  560 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG---E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT  560 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEE---S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEe---C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence            211       2468899999998877753   2 4688888876654  332       123569999999999866644


Q ss_pred             eCCCcEEEEecCCC
Q 012679          422 AADETLRFWNVFGA  435 (458)
Q Consensus       422 s~Dg~i~iW~~~~~  435 (458)
                       .. -|..||....
T Consensus       561 -~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          561 -RE-GFYCFNEKDK  572 (795)
T ss_dssp             -SS-CEEEEETTTT
T ss_pred             -CC-CceeECCCCC
Confidence             34 5777876543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.76  E-value=2e-05  Score=83.45  Aligned_cols=274  Identities=11%  Similarity=0.049  Sum_probs=172.9

Q ss_pred             cceeecc-CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          144 LNLLDWG-SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       144 ~~~~~~~-~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +..+... .+.+.++..++.|+.|+..+++...... ..+...|.++...++|. |.+|+.++-|.+||..+++......
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence            4444443 4567777766679999988877543321 12346799998888776 4556655458999988766443322


Q ss_pred             C------CCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEc--------ccccceEeEEEcCCCCEEEEEEC
Q 012679          223 G------GHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYR--------GHNQEVCGLKWSASGQQLASGGN  287 (458)
Q Consensus       223 ~------~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------~h~~~v~~l~~spd~~~l~sg~~  287 (458)
                      .      -....|.++..+ ...|..|+.+ -|.+||..+...  ..+.        -....|.++...++|. |..|+.
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~  328 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTY  328 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEES
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEEC
Confidence            1      024569999885 4567777766 588898775542  2221        1235699999988887 556777


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeee----cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe------
Q 012679          288 DNLLHIWDRSMASSNSVTQWLHRL----EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD------  357 (458)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~------  357 (458)
                      ++-|..|+.......    .....    .-....|.++...+++...+.+    .++-|..||..++.......      
T Consensus       329 ~~Gl~~~~~~~~~~~----~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt----~~~Gl~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          329 FGGLNYYHPIRNRFK----NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT----NDGGLNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             SSCEEEECGGGGSSE----EECCCTTSSSCSCSSEEEEEECTTSCEEEEE----SSSCEEEECTTTCCEEEECCC-----
T ss_pred             CCCeEEeCCCcccce----EEcCCCCCCCCCCCeeEEEEECCCCCEEEEE----CCCCeEEEcCCCCcEEEEecCCCCcc
Confidence            778899986544321    01000    0123568899988865444432    56679999988776543221      


Q ss_pred             ---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe----CCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          358 ---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS----GHTSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       358 ---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                         ....|.+++..+++..|.+  |..++.|.+||..+++...-..    .+...|.++...++|.+.+.. . +-|.+|
T Consensus       401 ~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~  476 (795)
T 4a2l_A          401 RGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRF  476 (795)
T ss_dssp             -CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEE
T ss_pred             cCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEE
Confidence               1356889999888883444  3355679999988765433211    134579999999999866644 4 458888


Q ss_pred             ecCCC
Q 012679          431 NVFGA  435 (458)
Q Consensus       431 ~~~~~  435 (458)
                      +..++
T Consensus       477 ~~~~~  481 (795)
T 4a2l_A          477 NPEQR  481 (795)
T ss_dssp             ETTTT
T ss_pred             eCCCC
Confidence            87654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.76  E-value=5.3e-06  Score=74.07  Aligned_cols=190  Identities=7%  Similarity=0.122  Sum_probs=125.4

Q ss_pred             eeeEEecCCCcccEEEEEeC-CCeEEEEeCCC--cEEEEEccCCCeeEEEEcccccce--EeEEEcCCCCEEEEEE-CCC
Q 012679          216 RQLRTLRGGHRSRVGSLAWN-NHILTTGGMDG--LIINNDVRVRDHIVETYRGHNQEV--CGLKWSASGQQLASGG-NDN  289 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~h~~~v--~~l~~spd~~~l~sg~-~dg  289 (458)
                      +.++++......-...|.|+ +.++.+.+.+|  .|+++|+.+++.. ..+.-. ...  -+++.  ++..|.... .++
T Consensus        32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~-~~~~l~-~~~FgeGit~--~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTL-QQIELG-KRYFGEGISD--WKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEE-EEEECC-TTCCEEEEEE--ETTEEEEEESSSS
T ss_pred             EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEE-EEEecC-CccceeEEEE--eCCEEEEEEeeCC
Confidence            45666652222334778885 45556666666  8999999988753 333322 222  33444  455554444 588


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC------CCeE
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG------SQVC  363 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~------~~v~  363 (458)
                      .+.+||..+.+.      +.++.... .-..++  +++..++++.   .++.|.++|..+.+.+..+...      ..++
T Consensus       108 ~v~v~D~~t~~~------~~ti~~~~-eG~glt--~dg~~L~~Sd---Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          108 LGFVWNIRNLRQ------VRSFNYDG-EGWGLT--HNDQYLIMSD---GTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             EEEEEETTTCCE------EEEEECSS-CCCCEE--ECSSCEEECC---SSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             EEEEEECccCcE------EEEEECCC-CceEEe--cCCCEEEEEC---CCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            999999988776      55554322 113344  5677777764   2578999999999999888653      2345


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC------------CCcEEEEEEcCCCCEEEEEeCC
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH------------TSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h------------~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      .+.|. +|+ +++. ...++.|.+.|..+++.+..+.-.            ....+.||++|+++.|...+..
T Consensus       176 ELe~~-~G~-lyan-~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          176 ELEWV-DGE-IFAN-VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEE-TTE-EEEE-ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             eeEEE-CCE-EEEE-EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            67776 554 5543 346789999999999998887532            1346899999988877777653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.74  E-value=7.7e-05  Score=70.69  Aligned_cols=239  Identities=7%  Similarity=-0.067  Sum_probs=149.3

Q ss_pred             eeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCC
Q 012679          146 LLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       146 ~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~  224 (458)
                      |.+..+...+..+..+.|+..++.......+  +. ....+..++|++.+..|... ...+.|..+++........+.. 
T Consensus        38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~--~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-  113 (349)
T 3v64_C           38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLL--LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-  113 (349)
T ss_dssp             EEESSSCCEEEEECBSCEEEECTTSCCEEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-
T ss_pred             ccccccCceeEeecccceEEEeCCCCeeEEe--ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-
Confidence            3344445566677778899999877665332  22 24458999999866666555 4567899999887654433332 


Q ss_pred             CcccEEEEEe--C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CC-CcEEEEeCCCC
Q 012679          225 HRSRVGSLAW--N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-ND-NLLHIWDRSMA  299 (458)
Q Consensus       225 ~~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~d-g~i~iwd~~~~  299 (458)
                      .......+++  . +.++++-...+.|.+.++..... .......-....++++.|.+..|.... .. +.|..+++...
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            2222334444  3 45556666678999999875543 223333345678999999666555544 34 77888887654


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEe
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSH  378 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~  378 (458)
                      ..      .......-.....|+++|++..++++-.  ..+.|..+|+........+.. ......+++.  +..++.+ 
T Consensus       193 ~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~t-  261 (349)
T 3v64_C          193 GR------RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWT-  261 (349)
T ss_dssp             SC------EESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEE-
T ss_pred             Cc------EEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEe-
Confidence            32      1111222345678999998888888876  678999999875443333322 3456777773  3344444 


Q ss_pred             cCCCCcEEEEeCCCceeeEEEe
Q 012679          379 GFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       379 g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      ....+.|..++..+++.+..+.
T Consensus       262 d~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          262 DWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             ETTTTEEEEEETTTCCSCEEEE
T ss_pred             cCCCCeEEEEEccCCCccEEec
Confidence            3467788888866666655554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=3.4e-05  Score=74.21  Aligned_cols=237  Identities=11%  Similarity=0.006  Sum_probs=150.1

Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEE
Q 012679          187 TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETY  263 (458)
Q Consensus       187 ~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~  263 (458)
                      +|.+..+ ..+|+.+.. ..|+.+++........+.  ....+..++|+   +.++++-...+.|..+++..... ...+
T Consensus        80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~  154 (386)
T 3v65_B           80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV  154 (386)
T ss_dssp             CEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred             eECCccc-cceeEeecC-ccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence            3444444 345555544 468888887765544443  34457889985   34555556678899999876542 2223


Q ss_pred             cccccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-Ce
Q 012679          264 RGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RC  341 (458)
Q Consensus       264 ~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~  341 (458)
                      ........++++.+.+..| ++-...+.|.+.++.....      ...+.........+++.|.+..++.+..  .. +.
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~  226 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPR  226 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCE
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------EEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCE
Confidence            3333456788998855554 5555577888888765432      2222233355689999998888888765  34 78


Q ss_pred             EEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEE
Q 012679          342 IKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS  420 (458)
Q Consensus       342 i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s  420 (458)
                      |..+++........... -.....+++++++..|+.+- ...+.|..+++........+.........|++ ..+..+++
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~t  304 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWT  304 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEe
Confidence            99999865443333332 34578999999888887764 35678999998754433333333455678888 34555666


Q ss_pred             EeCCCcEEEEecCCCCcc
Q 012679          421 AAADETLRFWNVFGAPQV  438 (458)
Q Consensus       421 ~s~Dg~i~iW~~~~~~~~  438 (458)
                      ....+.|..++..++...
T Consensus       305 d~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          305 DWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             ETTTTEEEEEETTTCCSC
T ss_pred             eCCCCeEEEEECCCCcce
Confidence            666788888885555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.70  E-value=0.00013  Score=68.15  Aligned_cols=230  Identities=10%  Similarity=-0.012  Sum_probs=143.2

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCC---ceeeEE-ecCCCccc
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTA---NRQLRT-LRGGHRSR  228 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~---~~~~~~-~~~~~~~~  228 (458)
                      ++..+..+.|+..|+.+.+...+  +. ....+..++|++++..|..+ ...+.|..+++..   +..... +.. .-..
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~--~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~   78 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQA   78 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSC
T ss_pred             EEEEECCCeEEEEECCCcceEeh--hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-CCCC
Confidence            45667778899999988775433  22 34568999999876666555 4568999999876   122222 222 2223


Q ss_pred             EEEEEe--CC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC--CcEEEEeCCCCCCCC
Q 012679          229 VGSLAW--NN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND--NLLHIWDRSMASSNS  303 (458)
Q Consensus       229 v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d--g~i~iwd~~~~~~~~  303 (458)
                      ...+++  .+ .+.++-...+.|.+.++..... ............++++.|.+..|..+...  +.|...++.....  
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--  155 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--  155 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--
Confidence            345554  34 4555656788999999875432 22233334567899999976666555543  6788888754321  


Q ss_pred             cceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEec
Q 012679          304 VTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       304 ~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g  379 (458)
                           ..+ ...-.....|+++|++..++++-.  ..+.|..+|+...........   ......+++.  +..++.+ .
T Consensus       156 -----~~~~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d  225 (316)
T 1ijq_A          156 -----YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-D  225 (316)
T ss_dssp             -----EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-E
T ss_pred             -----EEEEECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-E
Confidence                 222 122345679999998888888876  678999999875333222222   2346677775  3445544 3


Q ss_pred             CCCCcEEEEeCCCceeeEEEe
Q 012679          380 FTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       380 ~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      ...+.|..++..+++.+..+.
T Consensus       226 ~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          226 IINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TTTTEEEEEETTTCCCCEEEE
T ss_pred             CCCCeEEEEeCCCCcceEEEe
Confidence            467889999887776666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.70  E-value=6e-05  Score=71.44  Aligned_cols=237  Identities=10%  Similarity=0.007  Sum_probs=148.8

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          186 VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      .+|.+..++ .+|+.+.. ..|+..++........+.  ....+..++|+   +.++++-...+.|..+++..... ...
T Consensus        36 ~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~  110 (349)
T 3v64_C           36 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV  110 (349)
T ss_dssp             SCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred             CcccccccC-ceeEeecc-cceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEE
Confidence            355555553 35555543 458888887655444443  33457888985   34555555678899999876542 222


Q ss_pred             EcccccceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-C
Q 012679          263 YRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-R  340 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~  340 (458)
                      .........++++.+.+..| ++-...+.|.+.++.....      ...+.........+++.|.+..++.+..  .. +
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~  182 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTP  182 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECTTCSCEEEEEEETTTTEEEEEEC--SSSC
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------EEEEeCCCCCcceEEEecCcCeEEEecc--CCCC
Confidence            32233456789998755544 5555678899999875432      2222233345689999998888888765  44 7


Q ss_pred             eEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679          341 CIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA  419 (458)
Q Consensus       341 ~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~  419 (458)
                      .|...++........+. .-.....+++++++..|+.+- ...+.|..+++........+.........|++. ++...+
T Consensus       183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD-~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~  260 (349)
T 3v64_C          183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYW  260 (349)
T ss_dssp             EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEE
T ss_pred             EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE-CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEE
Confidence            89999886543332222 234578999999888887764 356789999987543333333334556788883 455556


Q ss_pred             EEeCCCcEEEEecCCCCc
Q 012679          420 SAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       420 s~s~Dg~i~iW~~~~~~~  437 (458)
                      +-...+.|...+-.++..
T Consensus       261 td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          261 TDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EETTTTEEEEEETTTCCS
T ss_pred             ecCCCCeEEEEEccCCCc
Confidence            655677888887544443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.68  E-value=5.5e-05  Score=72.77  Aligned_cols=248  Identities=6%  Similarity=-0.059  Sum_probs=154.7

Q ss_pred             eccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCc
Q 012679          148 DWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHR  226 (458)
Q Consensus       148 ~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~  226 (458)
                      ...+...+..+..+.|+.+++..+....+.  . ....+..++|.+.+..|... ...+.|..+++........+.. ..
T Consensus        83 ~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~--~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-~~  158 (386)
T 3v65_B           83 ALGPEPVLLFANRIDIRQVLPHRSEYTLLL--N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-GL  158 (386)
T ss_dssp             ECSSCCEEEEECBSCEEEECTTSCCCEEEE--C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-SC
T ss_pred             CccccceeEeecCccceeeccCCCcEEEEe--c-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-CC
Confidence            334455677777888999998877653332  2 24568999999866555554 4667899999887654333332 22


Q ss_pred             ccEE--EEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-C-CcEEEEeCCCCCC
Q 012679          227 SRVG--SLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-D-NLLHIWDRSMASS  301 (458)
Q Consensus       227 ~~v~--~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-d-g~i~iwd~~~~~~  301 (458)
                      ....  ++.|. +.++++-...+.|.+.++..... ...+........++++.|.+..|..... . +.|..+++.....
T Consensus       159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence            2233  44443 45556666678888888875442 2233333456789999997766655543 3 6788888765432


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecC
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                            .............|+|+|++..|+++-.  ..+.|..+|+........+.. ......+++. . ..++.+ ..
T Consensus       238 ------~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~-~~ly~t-d~  306 (386)
T 3v65_B          238 ------RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWT-DW  306 (386)
T ss_dssp             ------EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-T-TEEEEE-ET
T ss_pred             ------EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-C-CEEEEe-eC
Confidence                  1222222345678999998888888876  678999999875443333332 3456777773 3 344444 34


Q ss_pred             CCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                      ..+.|..++..+++.+..+.........|++
T Consensus       307 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          307 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            6778888887777766666543333444443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.68  E-value=4.2e-06  Score=74.76  Aligned_cols=191  Identities=11%  Similarity=0.110  Sum_probs=126.7

Q ss_pred             eeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEE
Q 012679          216 RQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIW  294 (458)
Q Consensus       216 ~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iw  294 (458)
                      +.++++......-...|.|++ .++.+.+.+|.|+++|+.+++..... .......-++++.. +++.+..-.++.+.+|
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence            455666522334457888865 55667778889999999988754333 22221223455542 3444455568999999


Q ss_pred             eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC------CeEEEEEc
Q 012679          295 DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS------QVCALLWN  368 (458)
Q Consensus       295 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~------~v~~~~~s  368 (458)
                      |..+.+.      +.++... ..-..++  +++..++++.   .++.|.++|..+.+.+..+....      .++.+.|.
T Consensus       122 D~~Tl~~------~~ti~~~-~eGwGLt--~Dg~~L~vSd---Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          122 SGMPPQR------ERTTRYS-GEGWGLC--YWNGKLVRSD---GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             ETTTTEE------EEEEECS-SCCCCEE--EETTEEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             ECCcCcE------EEEEeCC-CceeEEe--cCCCEEEEEC---CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence            9988766      5555432 2223444  4567777764   37799999999999998886532      45677887


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-------------CCcEEEEEEcCCCCEEEEEeC
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-------------TSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-------------~~~V~~l~~spdg~~l~s~s~  423 (458)
                       +|+ +++. ...++.|.+.|..+++.+..+.-.             ....+.||++|+++.|...+.
T Consensus       190 -dG~-lyan-vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          190 -NGV-IYAN-IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             -TTE-EEEE-ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             -CCE-EEEE-ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence             564 5543 346789999999999998877532             135689999997665555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.68  E-value=0.00023  Score=68.70  Aligned_cols=245  Identities=9%  Similarity=-0.043  Sum_probs=155.9

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCc----eeeEEecCCC
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTAN----RQLRTLRGGH  225 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~----~~~~~~~~~~  225 (458)
                      +..++..+....|+..++.......+.   .....+..++|++.+..|.... ..+.|+.+++...    .....+.. .
T Consensus        82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~---~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~  157 (400)
T 3p5b_L           82 SIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D  157 (400)
T ss_dssp             TSCEEEEEETTEEEEECTTSCSCEEEE---CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-S
T ss_pred             ccceeEEeccceeEEEccCCcceeEec---cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-C
Confidence            455777788899999999877654332   2356789999998666665554 5678999988652    22222222 3


Q ss_pred             cccEEEEEe---CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCC
Q 012679          226 RSRVGSLAW---NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMAS  300 (458)
Q Consensus       226 ~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~  300 (458)
                      ......+++   .+++.++-...+.|.+.++..... ...+........+|++.|.+..|+....  .+.|...++....
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence            334555555   345666666778999999875543 2233333455789999997666665543  3688888876543


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEE
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSS  377 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~  377 (458)
                      .      .......-.....|++++++..|+.+-.  ..+.|..+|+........+..   -.....++.  ++..++.+
T Consensus       237 ~------~~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt  306 (400)
T 3p5b_L          237 I------YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT  306 (400)
T ss_dssp             C------EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE
T ss_pred             c------EEEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe
Confidence            3      1222223356788999998888888765  678999999875444333332   234556766  34445544


Q ss_pred             ecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE
Q 012679          378 HGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ  411 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~  411 (458)
                       ....+.|..++..+++.+..+.........++.
T Consensus       307 -d~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          307 -DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             -ESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred             -cCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence             346778999998888777776654444555544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.68  E-value=1.8e-05  Score=80.44  Aligned_cols=264  Identities=15%  Similarity=0.095  Sum_probs=153.1

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCC--CCEEE-EEEcCCCCEEEEEec------CCeEEEEeCCCceeeEEecCC
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDEN--GPVTS-VNWAPDGRHIAIGLN------NCQVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~--~~V~~-v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~~~~~~~  224 (458)
                      +++++.++.|+.+|..+|+..-...+..+.  ..+++ -.. .++ .+++++.      +|.|+.+|..+++.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            888888999999999999973333332210  01111 011 134 5666653      799999999999998877642


Q ss_pred             Cccc------------------------------------E-EEEEe--CCCeEEEEeCC----------------CcEE
Q 012679          225 HRSR------------------------------------V-GSLAW--NNHILTTGGMD----------------GLII  249 (458)
Q Consensus       225 ~~~~------------------------------------v-~~l~~--~~~~l~sg~~d----------------g~i~  249 (458)
                      ....                                    + ..+++  ...+++.+..+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            2110                                    0 01223  35667776654                3799


Q ss_pred             EEEccCCCeeEEEEcc-cc--------cceEeEEEc-CCC---CEEEEEECCCcEEEEeCCCCCCCCcceee------ee
Q 012679          250 NNDVRVRDHIVETYRG-HN--------QEVCGLKWS-ASG---QQLASGGNDNLLHIWDRSMASSNSVTQWL------HR  310 (458)
Q Consensus       250 vwd~~~~~~~~~~~~~-h~--------~~v~~l~~s-pd~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------~~  310 (458)
                      .+|.++++..-..-.. |.        .++. +... .+|   ..++.++.+|.++++|..+++........      ..
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            9999988754332222 21        1121 2222 467   46777889999999999887652110000      00


Q ss_pred             ec-ccccce--------------------------eEEEecCCCCcEEEEe-----------------------------
Q 012679          311 LE-EHTSAV--------------------------KAIAWCPFQSNLLATG-----------------------------  334 (458)
Q Consensus       311 ~~-~h~~~v--------------------------~~l~~~p~~~~ll~s~-----------------------------  334 (458)
                      +. ....++                          ..++++|+...+++..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence            00 000001                          2456666544333311                             


Q ss_pred             -CCC------CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc-E
Q 012679          335 -GGG------GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-V  406 (458)
Q Consensus       335 -~g~------~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V  406 (458)
                       ...      .++.|..||+.+|+.+.......+...-.....+..+++  |..|+.|+.||..+++.+.+++-.... .
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~~  518 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIG  518 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence             001      357899999999999988865544332223335666666  558999999999999999988643321 1


Q ss_pred             EEEEEcCCCC-EEEEEe
Q 012679          407 LFMAQSPDGC-TVASAA  422 (458)
Q Consensus       407 ~~l~~spdg~-~l~s~s  422 (458)
                      .-+.+..+|+ ++++.+
T Consensus       519 ~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          519 YPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             CCEEEEETTEEEEEEEE
T ss_pred             ccEEEEeCCEEEEEEEc
Confidence            2244456776 444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.68  E-value=1.2e-06  Score=90.65  Aligned_cols=252  Identities=12%  Similarity=0.091  Sum_probs=145.4

Q ss_pred             EEEEEECCCCCeeeEEEecCC-CCCEEEEEEcCCCCEEEEEec-CCeEEEEeCCCceeeEE--ecCCCcccEEEEEe-CC
Q 012679          162 TVYLWDASDGTTSELVTVDDE-NGPVTSVNWAPDGRHIAIGLN-NCQVQLWDSTANRQLRT--LRGGHRSRVGSLAW-NN  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~la~g~~-dg~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~-~~  236 (458)
                      .+.+||..++++..+..+... .....++++..+|+++++|+. ++.+.+||..+++-...  +.. ......+... ++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg  298 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDG  298 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTS
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCC
Confidence            689999999988766655432 233445778899999999984 45899999887754332  221 2222344555 78


Q ss_pred             CeEEEEe-CC-----CcEEEEEccCCCeeEEEEcc-----cccceEeEEEcCCCCEEEEEECCC---------cEEEEeC
Q 012679          237 HILTTGG-MD-----GLIINNDVRVRDHIVETYRG-----HNQEVCGLKWSASGQQLASGGNDN---------LLHIWDR  296 (458)
Q Consensus       237 ~~l~sg~-~d-----g~i~vwd~~~~~~~~~~~~~-----h~~~v~~l~~spd~~~l~sg~~dg---------~i~iwd~  296 (458)
                      ++++.|+ .+     ..+.+||..+...  ..+..     ....-....+..++..++.|+.+|         .+..||.
T Consensus       299 ~iyv~GG~~~~~~~~~~~e~yd~~t~~W--~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~  376 (656)
T 1k3i_A          299 RVFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYT  376 (656)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEEC
T ss_pred             eEEEEeCcccCCcccccceEeCCCCCcc--eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeec
Confidence            9999998 34     4689999987653  22210     000000112234566666665554         4677887


Q ss_pred             CCCCCCCcceeeeeecccc---------cceeEEEecCCCCcEEEEeCCCC-C-----C---eEEEEECCCCCeeEEE--
Q 012679          297 SMASSNSVTQWLHRLEEHT---------SAVKAIAWCPFQSNLLATGGGGG-D-----R---CIKFWNTHTGACLNSV--  356 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~p~~~~ll~s~~g~~-d-----~---~i~lwd~~~~~~~~~~--  356 (458)
                      .....      ......+.         ..-.++.+...+..+++.||... +     .   .|.+||..+.......  
T Consensus       377 ~~~~w------~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  450 (656)
T 1k3i_A          377 SGSGD------VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN  450 (656)
T ss_dssp             STTCE------EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred             CCcce------eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC
Confidence            66542      11111111         12234455454677888775211 1     1   6888898887655433  


Q ss_pred             eC--CCCeEEEEEcCCCCeEEEEecCC----------CCcEEEEeCCCceee--EEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          357 DT--GSQVCALLWNKNERELLSSHGFT----------QNQLTLWKYPSMVKM--AELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       357 ~~--~~~v~~~~~s~~~~~l~~~~g~~----------d~~i~iwd~~~~~~~--~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      ..  ...-.+.+..++++.+++. |..          -..+.+||..+.+-.  ..+...........+.|||+.++.||
T Consensus       451 ~mp~~R~~~~~~~l~~g~i~v~G-G~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          451 GLYFARTFHTSVVLPDGSTFITG-GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CCSSCCBSCEEEECTTSCEEEEC-CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CCCCCcccCCeEECCCCCEEEEC-CcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence            21  2223455677888877773 322          256899998765432  22211112223455679999999998


Q ss_pred             C
Q 012679          423 A  423 (458)
Q Consensus       423 ~  423 (458)
                      .
T Consensus       530 ~  530 (656)
T 1k3i_A          530 G  530 (656)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.68  E-value=1.9e-05  Score=69.93  Aligned_cols=180  Identities=11%  Similarity=0.074  Sum_probs=122.4

Q ss_pred             CCEEEEEEcCCCCEEEEEecC--CeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNN--CQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~  260 (458)
                      .....+.|++ +.+..+.+.+  +.|+.+|+.+++.++.+......--..++..+ .+....-.++.+.+||..+.+. +
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~-~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP-R   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE-E
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE-E
Confidence            4577899986 5544555554  48999999999999988742222223455544 5555556789999999987764 4


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--cc---cceeEEEecCCCCcEEEEeC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HT---SAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ..+... ..-.+++  +++..|+.+..++.|.++|..+.+.      +.++.-  +.   ..++.+.|.  +..+++..-
T Consensus        99 ~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~------~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw  167 (243)
T 3mbr_X           99 ARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ------VGSIKVTAGGRPLDNLNELEWV--NGELLANVW  167 (243)
T ss_dssp             EEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCE------EEEEECEETTEECCCEEEEEEE--TTEEEEEET
T ss_pred             EEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeE------EEEEEEccCCcccccceeeEEe--CCEEEEEEC
Confidence            444432 2223444  5677777667789999999888765      333322  22   234556665  345666654


Q ss_pred             CCCCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEe
Q 012679          336 GGGDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSH  378 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~  378 (458)
                        .+..|.+.|..+|+.+..++..              .-.+.++|+|+++.|+++.
T Consensus       168 --~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          168 --LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             --TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             --CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence              5779999999999999988632              2468999999999888874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=1.4e-05  Score=71.47  Aligned_cols=179  Identities=9%  Similarity=0.039  Sum_probs=125.3

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      .....+.|+ ++.+..+.+.+|.|+++|+++++.++.+ .....-.-.++..+ .+.+..-.++.+.+||..+.+. +..
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-~~t  131 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-ERT  131 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-EEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-EEE
Confidence            345788887 4556666778889999999999998887 42322234466755 5555556789999999987764 444


Q ss_pred             EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc--ccc---ceeEEEecCCCCcEEEEeCCC
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE--HTS---AVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~---~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      +.. ...-.+++  +|++.|+.+..++.|.++|..+.+.      +.++.-  +..   .+..+.|. ++ .+++..-  
T Consensus       132 i~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v------~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw--  198 (268)
T 3nok_A          132 TRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL------VGAVQVKLRGQPVELINELECA-NG-VIYANIW--  198 (268)
T ss_dssp             EEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCE------EEEEECEETTEECCCEEEEEEE-TT-EEEEEET--
T ss_pred             EeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE------EEEEEeCCCCcccccccccEEe-CC-EEEEEEC--
Confidence            443 22223444  5788888777799999999888765      333322  222   34567776 34 5776654  


Q ss_pred             CCCeEEEEECCCCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEe
Q 012679          338 GDRCIKFWNTHTGACLNSVDTG--------------SQVCALLWNKNERELLSSH  378 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~  378 (458)
                      .+..|.+.|..+|+.+..++..              .-.+.|+|+|+++.|+++.
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            6789999999999999988643              2468999999988888864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.65  E-value=2e-05  Score=80.13  Aligned_cols=269  Identities=10%  Similarity=0.091  Sum_probs=156.7

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC--CEE---EEEEc-CCCC-EEEEEec------CCeEEEEeCCCce
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENG--PVT---SVNWA-PDGR-HIAIGLN------NCQVQLWDSTANR  216 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~--~V~---~v~~s-~~g~-~la~g~~------dg~v~iwd~~~~~  216 (458)
                      ..+.+++++.++.|+.+|..+|+..-...+..+..  .+.   .+.=. .+|+ .+++++.      +|.|.-+|..+++
T Consensus       116 ~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          116 YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            35678888899999999999999733333322110  111   11101 1233 5666653      7899999999999


Q ss_pred             eeEEecCCCcccE-----------------------------------------EEEEe--CCCeEEEEeC---------
Q 012679          217 QLRTLRGGHRSRV-----------------------------------------GSLAW--NNHILTTGGM---------  244 (458)
Q Consensus       217 ~~~~~~~~~~~~v-----------------------------------------~~l~~--~~~~l~sg~~---------  244 (458)
                      .+...... ...+                                         ..+++  ...+++.+..         
T Consensus       196 ~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          196 EIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             EEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             EEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            88765431 0000                                         01222  2356665552         


Q ss_pred             -----------C----CcEEEEEccCCCeeEEEEc-ccc--------cceEeEEEc-CCCC---EEEEEECCCcEEEEeC
Q 012679          245 -----------D----GLIINNDVRVRDHIVETYR-GHN--------QEVCGLKWS-ASGQ---QLASGGNDNLLHIWDR  296 (458)
Q Consensus       245 -----------d----g~i~vwd~~~~~~~~~~~~-~h~--------~~v~~l~~s-pd~~---~l~sg~~dg~i~iwd~  296 (458)
                                 |    +.|..+|.++++..-..-. .|.        .++. +... .+|+   .++.++.+|.++++|.
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~  353 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDR  353 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEEC
Confidence                       2    5899999998876433222 232        1221 1221 4674   7888999999999999


Q ss_pred             CCCCCCCccee------eeeec-------------c---------ccc-----------ceeEEEecCCCCcEEEEeC--
Q 012679          297 SMASSNSVTQW------LHRLE-------------E---------HTS-----------AVKAIAWCPFQSNLLATGG--  335 (458)
Q Consensus       297 ~~~~~~~~~~~------~~~~~-------------~---------h~~-----------~v~~l~~~p~~~~ll~s~~--  335 (458)
                      .+++.......      ...+.             .         ...           .-..++++|....+++...  
T Consensus       354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~  433 (582)
T 1flg_A          354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW  433 (582)
T ss_dssp             TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred             CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence            88765211000      00000             0         000           0013566775555544321  


Q ss_pred             ----------------------------CCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEE
Q 012679          336 ----------------------------GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL  387 (458)
Q Consensus       336 ----------------------------g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~i  387 (458)
                                                  ...++.|..||+.+|+.+.......++..-.....+..+++  |..|+.++.
T Consensus       434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A  511 (582)
T 1flg_A          434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKA  511 (582)
T ss_dssp             EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEE
T ss_pred             ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEE
Confidence                                        01368899999999999988776554433223334666666  558999999


Q ss_pred             EeCCCceeeEEEeCCCCcE-EEEEEcCCCC-EEEEEe
Q 012679          388 WKYPSMVKMAELSGHTSRV-LFMAQSPDGC-TVASAA  422 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V-~~l~~spdg~-~l~s~s  422 (458)
                      ||..+++.+.+++.....+ .-+.+..+|+ ++++.+
T Consensus       512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence            9999999999887543221 1255666776 444443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.65  E-value=8.3e-05  Score=66.61  Aligned_cols=206  Identities=11%  Similarity=0.134  Sum_probs=136.2

Q ss_pred             EecCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEcc
Q 012679          178 TVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       178 ~~~~h~~~V~~v~~s~~g~~l-a~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~  254 (458)
                      .+.+-.+.+..++|+|++..| ++...++.|...|.. ++.++.+...-....-.|++.  +.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            455666789999999976644 557778899999988 888888764334567778883  4455555567889999886


Q ss_pred             CCCe--eEEEEc------ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeee--e--cccccceeEEE
Q 012679          255 VRDH--IVETYR------GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR--L--EEHTSAVKAIA  322 (458)
Q Consensus       255 ~~~~--~~~~~~------~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~--~~h~~~v~~l~  322 (458)
                      ....  .+....      .......+|+|+|+++.|.++.......||.+..............  +  ..+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            6542  112221      2344568999999998777777655555555542111000010100  0  11234578999


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----------SQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      ++|..+.+++...  ..+.|..+|.. |+.+..+...          .+.-.+++.++|+..+++   +.+.+++|.-
T Consensus       180 ~dp~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs---E~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS---EPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE---TTTEEEEEEC
T ss_pred             EcCCCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc---CCceEEEEEe
Confidence            9998888888876  88999999965 6677666543          367899999999855552   5566666643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=9.5e-05  Score=78.10  Aligned_cols=272  Identities=9%  Similarity=-0.022  Sum_probs=172.0

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEE-------e-----cCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVT-------V-----DDENGPVTSVNWAPDGRHIAIGLNNCQVQL  209 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~-------~-----~~h~~~V~~v~~s~~g~~la~g~~dg~v~i  209 (458)
                      .+.++.... +.+..+...+-|.++|..++.......       .     .-....|.++...++|. |.+|+.++-|..
T Consensus       259 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~  337 (781)
T 3v9f_A          259 YIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINF  337 (781)
T ss_dssp             CEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEE
T ss_pred             eEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEE
Confidence            455555544 556666665789999988776533322       0     01245799999998886 667887778999


Q ss_pred             EeCCCceeeEEec--------CCCcccEEEEEeCC-CeEEEEeCCCcEEEEEccCCCeeEEEE----cccccceEeEEEc
Q 012679          210 WDSTANRQLRTLR--------GGHRSRVGSLAWNN-HILTTGGMDGLIINNDVRVRDHIVETY----RGHNQEVCGLKWS  276 (458)
Q Consensus       210 wd~~~~~~~~~~~--------~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~----~~h~~~v~~l~~s  276 (458)
                      ++..+........        .-....|.++..+. ..|..|+.++-|..+|..+...  ..+    ......|.++...
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d  415 (781)
T 3v9f_A          338 ISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKD  415 (781)
T ss_dssp             ECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEEC
T ss_pred             eCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEEC
Confidence            9977654332211        11235689998863 6778888777788998764321  111    1234678899888


Q ss_pred             CCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee
Q 012679          277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL  353 (458)
Q Consensus       277 pd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~  353 (458)
                      +++.+.+ |+.++-|..+|..++..       ..+.   .....|.++...+++. +.+..   . +-|..+|..+++..
T Consensus       416 ~~g~lWi-gt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~v~~i~~d~~g~-lwigt---~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          416 SEGNLWF-GTYLGNISYYNTRLKKF-------QIIELEKNELLDVRVFYEDKNKK-IWIGT---H-AGVFVIDLASKKVI  482 (781)
T ss_dssp             TTSCEEE-EETTEEEEEECSSSCEE-------EECCSTTTCCCCEEEEEECTTSE-EEEEE---T-TEEEEEESSSSSCC
T ss_pred             CCCCEEE-EeccCCEEEEcCCCCcE-------EEeccCCCCCCeEEEEEECCCCC-EEEEE---C-CceEEEeCCCCeEE
Confidence            7777544 67767788998765532       2221   2346788888887544 43322   4 56889998887654


Q ss_pred             EEEeC------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC----CCCcEEEEEEcCCCCEEEEEeC
Q 012679          354 NSVDT------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG----HTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       354 ~~~~~------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~----h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      .....      ...|.++...+++...+.+   ..+-|..||..+.+.. .+..    ....|.++...++|.+.++ +.
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~  557 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGT---FGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLA-TG  557 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECTTCCEEEEE---SSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEE-ET
T ss_pred             ecccCcccccccceeEEEEEcCCCCEEEEE---cCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEE-EC
Confidence            43322      2568899999998877764   3345788887665433 3321    1356899999999986664 44


Q ss_pred             CCcEEEEecCCC
Q 012679          424 DETLRFWNVFGA  435 (458)
Q Consensus       424 Dg~i~iW~~~~~  435 (458)
                      +|.|..||....
T Consensus       558 ~Glv~~~d~~~~  569 (781)
T 3v9f_A          558 EGLVCFPSARNF  569 (781)
T ss_dssp             TEEEEESCTTTC
T ss_pred             CCceEEECCCCC
Confidence            665577776544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=0.00014  Score=76.81  Aligned_cols=276  Identities=12%  Similarity=0.013  Sum_probs=169.4

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec-----CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD-----DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR  216 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~-----~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~  216 (458)
                      .+.++.... +++.+++.+ .|.+||..+++........     .....|.++...++|. |.+|+..+-|.++|..++.
T Consensus       212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~  289 (781)
T 3v9f_A          212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ  289 (781)
T ss_dssp             SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-
T ss_pred             ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe
Confidence            345554444 567777665 7999998877654332211     1245799999988876 5667775568899987765


Q ss_pred             eeEEec-------------CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEc----------ccccceEe
Q 012679          217 QLRTLR-------------GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYR----------GHNQEVCG  272 (458)
Q Consensus       217 ~~~~~~-------------~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~----------~h~~~v~~  272 (458)
                      ......             .-....|.++..+ ...|..|+.++-|..++......  ..+.          .....|.+
T Consensus       290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~  367 (781)
T 3v9f_A          290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTF--HTWSYSPTQMNESSLSNKVVSS  367 (781)
T ss_dssp             --------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSC--EEEC----CCCSSCCSSSCEEE
T ss_pred             eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc--eeeccCccccccCCCCCcceEE
Confidence            332111             1134578999886 45788888888889998765442  1221          12356889


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679          273 LKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC  352 (458)
Q Consensus       273 l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~  352 (458)
                      +...++|. |..|+.++-|.+||.........   ..........|.++...+++. +.+..   .++-|..+|..+++.
T Consensus       368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~---~~~~~~~~~~v~~i~~d~~g~-lWigt---~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYN---KENRELLSNSVLCSLKDSEGN-LWFGT---YLGNISYYNTRLKKF  439 (781)
T ss_dssp             EEECTTSC-EEEEEBSSCEEEEETTEEEEECC--------CCCSBEEEEEECTTSC-EEEEE---TTEEEEEECSSSCEE
T ss_pred             EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc---cCCCCCCCcceEEEEECCCCC-EEEEe---ccCCEEEEcCCCCcE
Confidence            98888776 45566666788899764322100   000012346788998887544 44422   556789999887754


Q ss_pred             eEEEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-----CCcEEEEEEcCCCCEEEEEeCC
Q 012679          353 LNSVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-----TSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       353 ~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-----~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      .....   ....|.++...+++...+.+   . +.|..|+..+++........     ...|.++...++|.+.+ |+.+
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~  514 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKKIWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFG  514 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSEEEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESS
T ss_pred             EEeccCCCCCCeEEEEEECCCCCEEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcC
Confidence            33221   23568889888888766642   3 56889998776543322222     36799999999998766 4443


Q ss_pred             CcEEEEecCCC
Q 012679          425 ETLRFWNVFGA  435 (458)
Q Consensus       425 g~i~iW~~~~~  435 (458)
                      +-|..|+....
T Consensus       515 ~Gl~~~~~~~~  525 (781)
T 3v9f_A          515 GGVGIYTPDMQ  525 (781)
T ss_dssp             SCEEEECTTCC
T ss_pred             CCEEEEeCCCC
Confidence            34666776543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.58  E-value=8.9e-05  Score=69.20  Aligned_cols=236  Identities=10%  Similarity=0.011  Sum_probs=145.5

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeE-EecCCCcccE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLR-TLRGGHRSRV  229 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~-~~~~~~~~~v  229 (458)
                      .-++..+....|+.+++..........+.+ ...+..++|.+.+..|... ...+.|..+++..+.... .+.. .-...
T Consensus         4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p   81 (318)
T 3sov_A            4 APLLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSP   81 (318)
T ss_dssp             CCEEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCC
T ss_pred             ccEEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCc
Confidence            445667778899999998764211122221 2347789999865555444 556789999987663221 2221 11223


Q ss_pred             EEEE--e-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCc
Q 012679          230 GSLA--W-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSV  304 (458)
Q Consensus       230 ~~l~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~  304 (458)
                      ..++  | ++.++++-...+.|.++++..... ............++++.|.+..|..+..  .+.|...++.....   
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---  157 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---  157 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---
Confidence            3444  4 345556666778999999875432 2223234456789999997666666553  57888888764332   


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                         .......-.....|+++|++..++.+-.  ..+.|..+|+........+. .......+++..  ..++.+ ....+
T Consensus       158 ---~~~~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywt-d~~~~  229 (318)
T 3sov_A          158 ---FIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWT-DWSTH  229 (318)
T ss_dssp             ---EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEE-ETTTT
T ss_pred             ---EEEEECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEE-ecCCC
Confidence               1111222344578999998888888866  77899999987543332222 234566777753  344443 44678


Q ss_pred             cEEEEeCCCceeeEEEeC
Q 012679          384 QLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~  401 (458)
                      .|..++..+++....+..
T Consensus       230 ~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          230 SILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEEEETTTCCSCEEEEC
T ss_pred             eEEEEECCCCCceEEEeC
Confidence            899999887776666543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.57  E-value=0.00029  Score=65.62  Aligned_cols=228  Identities=11%  Similarity=-0.026  Sum_probs=142.0

Q ss_pred             EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--C-CeEEEEeCCCcEEEEEccCC---CeeEEEEcccccce
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N-HILTTGGMDGLIINNDVRVR---DHIVETYRGHNQEV  270 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~vwd~~~~---~~~~~~~~~h~~~v  270 (458)
                      +|+.+.. ..|+..|+.+.+....+.  .......++|+  + .++++-...+.|..+++...   ......+...-...
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            4555544 468999998877655554  34567888885  3 45555566789999998751   21122232223456


Q ss_pred             EeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          271 CGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       271 ~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .++++.+.+..| ++-...+.|.+.|......      ...+.........+++.|.+..++.+..+ ..+.|...++..
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG  152 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  152 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC
Confidence            789998755544 5556678999999864322      11122233456899999988888887642 237888888754


Q ss_pred             CCeeEEE-e-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          350 GACLNSV-D-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       350 ~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                       .....+ . .-.....+++++++..|+.+. ...+.|..+|+..........  ........|++. .+..+++-...+
T Consensus       153 -~~~~~~~~~~~~~P~gla~d~~~~~lY~~D-~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 -VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             -CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             -CCeEEEEECCCCCceEEEEeccCCEEEEEE-CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence             333333 2 235678999999888887764 356789999987432222222  123446778885 355566666678


Q ss_pred             cEEEEecCCCCc
Q 012679          426 TLRFWNVFGAPQ  437 (458)
Q Consensus       426 ~i~iW~~~~~~~  437 (458)
                      .|..++..++..
T Consensus       230 ~V~~~~~~~g~~  241 (316)
T 1ijq_A          230 AIFSANRLTGSD  241 (316)
T ss_dssp             EEEEEETTTCCC
T ss_pred             eEEEEeCCCCcc
Confidence            888888765543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.56  E-value=0.00061  Score=64.74  Aligned_cols=276  Identities=11%  Similarity=0.098  Sum_probs=189.0

Q ss_pred             ceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          145 NLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       145 ~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      ..+...++..+++-.    +..|.|.|+.++.......+..     -+.-.+|..+.||.-. ..+++|+|+++...++.
T Consensus        28 ~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks  101 (494)
T 1bpo_A           28 STLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA  101 (494)
T ss_dssp             TTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             ceeeeecCceEEEEecCCCCCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc
Confidence            334444556666554    3478889988766432333322     2445788888887765 66999999999999988


Q ss_pred             ecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc----ccceEeEEEcCCCCEEEEEEC-------C
Q 012679          221 LRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGH----NQEVCGLKWSASGQQLASGGN-------D  288 (458)
Q Consensus       221 ~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~sg~~-------d  288 (458)
                      +.  ....|.--.| +.+.|+..+. ..|+.|++.....+++.+.-|    ...|..-..+++.++++..|-       .
T Consensus       102 ~~--~~e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~  178 (494)
T 1bpo_A          102 HT--MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV  178 (494)
T ss_dssp             EE--CSSCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred             ee--cCCCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence            87  4557777888 6777776654 579999998765566666654    346777888999999875542       4


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC--CCcEEEEeC-CCCCCeEEEEECCCC---C-e--eEEEeC-
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF--QSNLLATGG-GGGDRCIKFWNTHTG---A-C--LNSVDT-  358 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~ll~s~~-g~~d~~i~lwd~~~~---~-~--~~~~~~-  358 (458)
                      |.+.+|..+...       .+.+++|.+....+....+  ...+++.+. ....+.+++-++...   . .  .+..+. 
T Consensus       179 G~mQLYS~er~~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~  251 (494)
T 1bpo_A          179 GAMQLYSVDRKV-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF  251 (494)
T ss_dssp             EEEEEEESTTCC-------EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred             ceEEEeeccccc-------cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence            678899987654       4677888877666555422  123444432 112378999988543   1 1  111111 


Q ss_pred             ------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          359 ------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       359 ------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                            ..-..++..++....++..+  .-|.|.+||+.++..+..-+-....|..-+-.....=++.....|.|.--.+
T Consensus       252 fppe~~~DFPvamqvs~kygviyviT--K~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          252 FPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV  329 (494)
T ss_dssp             CCTTSTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred             CCcccccCceeEEEecccCCEEEEEe--cCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence                  23367888898888888765  7899999999999999888777777776666666556677778998888777


Q ss_pred             CCCCcc
Q 012679          433 FGAPQV  438 (458)
Q Consensus       433 ~~~~~~  438 (458)
                      .+...+
T Consensus       330 ~e~~iv  335 (494)
T 1bpo_A          330 EEENII  335 (494)
T ss_dssp             CTTTHH
T ss_pred             ccccch
Confidence            765543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.52  E-value=0.00012  Score=68.34  Aligned_cols=231  Identities=10%  Similarity=0.024  Sum_probs=143.0

Q ss_pred             EEEEEecCCeEEEEeCCCcee-eEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEe
Q 012679          197 HIAIGLNNCQVQLWDSTANRQ-LRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCG  272 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~  272 (458)
                      +|+.+. ...|+..|+..... ...+.. ....+..++|+   +.++++-...+.|..+++.............-....+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            444443 35788999877631 111111 23456788885   4555666677889999987653211222222345678


Q ss_pred             EEEcCCCC-EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC
Q 012679          273 LKWSASGQ-QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA  351 (458)
Q Consensus       273 l~~spd~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~  351 (458)
                      +++.+.+. ++++-...+.|.++++.....      ...+.........+++.|.+..++.+..+ ..+.|...++....
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~  156 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSS  156 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcE------EEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCC
Confidence            89987544 445555678999999875432      11222334456899999977788777531 35788888876433


Q ss_pred             eeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 012679          352 CLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW  430 (458)
Q Consensus       352 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW  430 (458)
                      ....+.. -.....+++++++..|+.+- ...+.|..+++........+.+.......+++.. +..+++-...+.|..+
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~  234 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC  234 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCccEEEEeccCCEEEEEE-CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence            3222222 34578999999888887763 3678899999875333222333445567788753 3455555567888888


Q ss_pred             ecCCCCcc
Q 012679          431 NVFGAPQV  438 (458)
Q Consensus       431 ~~~~~~~~  438 (458)
                      +..++...
T Consensus       235 ~~~~G~~~  242 (318)
T 3sov_A          235 NKYTGEGL  242 (318)
T ss_dssp             ETTTCCSC
T ss_pred             ECCCCCce
Confidence            88666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=0.00017  Score=67.25  Aligned_cols=233  Identities=9%  Similarity=0.032  Sum_probs=135.1

Q ss_pred             ceeeccC-CC-eEEEEcCCEEEEEECCCCCeeeEEEecC-----------------CCCCEEEEEEcC-CCCEEEEEecC
Q 012679          145 NLLDWGS-SN-VLAIALGSTVYLWDASDGTTSELVTVDD-----------------ENGPVTSVNWAP-DGRHIAIGLNN  204 (458)
Q Consensus       145 ~~~~~~~-~~-~la~~~d~~v~iwd~~~~~~~~~~~~~~-----------------h~~~V~~v~~s~-~g~~la~g~~d  204 (458)
                      ..+.|++ ++ +++...++.|+.|+..+++.........                 ....+..+++.+ +| .|+++...
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCY  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECC
Confidence            3455654 44 6666678899999988766533221110                 013588999998 55 46666555


Q ss_pred             CeEEEEeCCCceeeEEecC----CCcccEEEEEeCC---CeEEEEeC-----------------CCcEEEEEccCCCeeE
Q 012679          205 CQVQLWDSTANRQLRTLRG----GHRSRVGSLAWNN---HILTTGGM-----------------DGLIINNDVRVRDHIV  260 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~~~---~~l~sg~~-----------------dg~i~vwd~~~~~~~~  260 (458)
                      +.|..+|..++.. ..+..    ........+++++   .+.++-..                 +|.|..+|..++..  
T Consensus       101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--  177 (322)
T 2fp8_A          101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET--  177 (322)
T ss_dssp             TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE--
T ss_pred             CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE--
Confidence            6688898776542 22211    0113456777743   44444322                 36788888765442  


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC---
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG---  336 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g---  336 (458)
                      ..+.........++|+++++.|..+ +..+.|.+|++....... ......   ..+ ...+++.+++. ++++..+   
T Consensus       178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~---~~g-P~gi~~d~~G~-l~va~~~~~~  251 (322)
T 2fp8_A          178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVK---IPN-PGNIKRNADGH-FWVSSSEELD  251 (322)
T ss_dssp             EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEE---CSS-EEEEEECTTSC-EEEEEEEETT
T ss_pred             EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEe---CCC-CCCeEECCCCC-EEEEecCccc
Confidence            2222222345679999999866555 556899999987532211 111111   123 67889999875 4444321   


Q ss_pred             -----CCCCeEEEEECCCCCeeEEEeCC-----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          337 -----GGDRCIKFWNTHTGACLNSVDTG-----SQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       337 -----~~d~~i~lwd~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                           ...+.|..+|. .++.+..+...     ..++.+++ .++ .|+++ +...+.|.++++.
T Consensus       252 ~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~-~~~~~~i~~~~~~  312 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIG-TLFHGSVGILVYD  312 (322)
T ss_dssp             SSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEE-CSSCSEEEEEEC-
T ss_pred             ccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEe-ecCCCceEEEecc
Confidence                 01456888886 47777777543     24666666 344 44443 3457788888865

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.50  E-value=0.00032  Score=67.74  Aligned_cols=232  Identities=11%  Similarity=-0.035  Sum_probs=145.9

Q ss_pred             CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCC---eeEEEEcccccc
Q 012679          196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRD---HIVETYRGHNQE  269 (458)
Q Consensus       196 ~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~  269 (458)
                      .+|+.+. ...|+..++........+.  ....+..++|+  .. ++++-...+.|..+++....   ............
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~  160 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  160 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence            3455444 4588999988765544443  45677889985  34 45555567889888886521   112333334456


Q ss_pred             eEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECC
Q 012679          270 VCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTH  348 (458)
Q Consensus       270 v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~  348 (458)
                      ..++++.+. +++.++-...+.|.+.++.....      ...+.........|++.|.+..++.+-.+ ..+.|...++.
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~d  233 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  233 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETT
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCC
Confidence            788999884 44455555678899999875432      22222233457899999988888887642 34689999886


Q ss_pred             CCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          349 TGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       349 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      .......+.. -.....+++++++..|+.+- ...+.|..+|+........+..  .-.....|++. .+.++++-...+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            5444333333 25688999999888888764 3567899999875433332322  23445677773 344556666678


Q ss_pred             cEEEEecCCCCccc
Q 012679          426 TLRFWNVFGAPQVI  439 (458)
Q Consensus       426 ~i~iW~~~~~~~~~  439 (458)
                      .|..++..++....
T Consensus       312 ~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          312 AIFSANRLTGSDVN  325 (400)
T ss_dssp             SEEEEESSSCCCCE
T ss_pred             eEEEEEcCCCCceE
Confidence            88888865554443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.49  E-value=0.0002  Score=66.43  Aligned_cols=222  Identities=13%  Similarity=0.068  Sum_probs=130.9

Q ss_pred             ccceeeccC-CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C-eEEEEeCCCceee
Q 012679          143 YLNLLDWGS-SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C-QVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g-~v~iwd~~~~~~~  218 (458)
                      ....+.|++ ++++.+. .++.|+.||... +.......   ...+..+++.++|+++++.... + .|..+|..+++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV---EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            455677866 4566665 578999999775 43333332   3468999999999965554332 2 4777787777654


Q ss_pred             EEecCCCcccEEEEE-eCCCeEEEE-eCCCcEEEEEccCCCeeEEEEc---------ccccceEeEEEcCCCCEEEEE-E
Q 012679          219 RTLRGGHRSRVGSLA-WNNHILTTG-GMDGLIINNDVRVRDHIVETYR---------GHNQEVCGLKWSASGQQLASG-G  286 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~-~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~---------~h~~~v~~l~~spd~~~l~sg-~  286 (458)
                      .............++ |.+..++.. ..++.|+++|...+...+....         ..-.....+  +++++.|..+ .
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            332211222223333 444444444 4688999999765321111110         111234555  7888766554 4


Q ss_pred             CCCcEEEEeCCC-CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE--EEeCC-CCe
Q 012679          287 NDNLLHIWDRSM-ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN--SVDTG-SQV  362 (458)
Q Consensus       287 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~--~~~~~-~~v  362 (458)
                      ..+.|..+|+.. +... .   ...+.. ......+++.+++ .++++..  ..+.|.++|.. |+...  .+... ...
T Consensus       187 ~~~~I~~~~~~~~g~~~-~---~~~~~~-~~~P~gi~vd~dG-~l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPG-E---PEIFVE-QTNIDDFAFDVEG-NLYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             TTTEEEEEEBCTTSCBC-C---CEEEEE-SCCCSSEEEBTTC-CEEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred             CCCEEEEEEeCCCCCCC-c---cEEEec-cCCCCCeEECCCC-CEEEEeC--CCCeEEEECCC-CCEEEEeecccccCCc
Confidence            578899999875 2211 1   111111 1345678999976 4555543  56789999975 66533  33333 568


Q ss_pred             EEEEEc---CCCCeEEEEec
Q 012679          363 CALLWN---KNERELLSSHG  379 (458)
Q Consensus       363 ~~~~~s---~~~~~l~~~~g  379 (458)
                      ++++|.   ++++.|+++..
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEEC
T ss_pred             eEEEEecccCCCCEEEEECC
Confidence            999998   88888877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.44  E-value=1.9e-05  Score=81.73  Aligned_cols=262  Identities=13%  Similarity=0.075  Sum_probs=144.7

Q ss_pred             EEEECCCCCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCC-----------eEEEEeCCCcee--eEEecCCCcccE
Q 012679          164 YLWDASDGTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNC-----------QVQLWDSTANRQ--LRTLRGGHRSRV  229 (458)
Q Consensus       164 ~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg-----------~v~iwd~~~~~~--~~~~~~~~~~~v  229 (458)
                      ..+|..++++..+..+..  . -.++++.+ +|+.++.|+.+.           .+.+||..+++.  +..+...+....
T Consensus       169 ~~~dp~~~~W~~~~~~P~--~-~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~  245 (656)
T 1k3i_A          169 TAPQPGLGRWGPTIDLPI--V-PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC  245 (656)
T ss_dssp             CCCCTTSCEEEEEEECSS--C-CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred             ccCCCCCCeeeeeccCCC--C-ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence            334455666665555543  1 23566777 888888887543           588999988753  333332233333


Q ss_pred             EEEE--eCCCeEEEEeC-CCcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEE-CC-----CcEEEEeCCCC
Q 012679          230 GSLA--WNNHILTTGGM-DGLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGG-ND-----NLLHIWDRSMA  299 (458)
Q Consensus       230 ~~l~--~~~~~l~sg~~-dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~-~d-----g~i~iwd~~~~  299 (458)
                      .+++  .++.+++.|+. +..+.+||..+..... ..+.. ...-.++...+++++++.|+ .+     ..+.+||..+.
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            3333  47889999984 4589999998764311 11111 11223455667999999998 44     57899998765


Q ss_pred             CCCCcc----eeeeeecccccceeEEEecCCCCcEEEEeCC-------CCCCeEEEEECCCCCeeEEEeCC---------
Q 012679          300 SSNSVT----QWLHRLEEHTSAVKAIAWCPFQSNLLATGGG-------GGDRCIKFWNTHTGACLNSVDTG---------  359 (458)
Q Consensus       300 ~~~~~~----~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~lwd~~~~~~~~~~~~~---------  359 (458)
                      .-....    .++..- .+.     .++.. +..+++.++.       .....+..||..+..........         
T Consensus       325 ~W~~~~~~~~~p~~~~-~~~-----~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~  397 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTA-DKQ-----GLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD  397 (656)
T ss_dssp             EEEEETTSCSGGGCCC-CTT-----GGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred             cceeCCCccccccccc-ccc-----ceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence            431100    000000 010     11112 2333343320       02346788998887654333211         


Q ss_pred             -CCeEEEEEcCCCCeEEEEecCCC-------C---cEEEEeCCCceeeEEE--eCCCCcE-EEEEEcCCCCEEEEEeCC-
Q 012679          360 -SQVCALLWNKNERELLSSHGFTQ-------N---QLTLWKYPSMVKMAEL--SGHTSRV-LFMAQSPDGCTVASAAAD-  424 (458)
Q Consensus       360 -~~v~~~~~s~~~~~l~~~~g~~d-------~---~i~iwd~~~~~~~~~~--~~h~~~V-~~l~~spdg~~l~s~s~D-  424 (458)
                       ..-.++.+...+..|++..|...       .   .|.+||..+..-....  ..+..+. .+++..|+|++++.||.+ 
T Consensus       398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~  477 (656)
T 1k3i_A          398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR  477 (656)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred             CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence             12345555554555555545321       1   5778887765543322  2233333 345677899999999864 


Q ss_pred             ----------CcEEEEecCCCC
Q 012679          425 ----------ETLRFWNVFGAP  436 (458)
Q Consensus       425 ----------g~i~iW~~~~~~  436 (458)
                                ..+.+||.....
T Consensus       478 ~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          478 GIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CcCcCCCCcccceEEEcCCCCc
Confidence                      468899986543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.39  E-value=0.0015  Score=61.11  Aligned_cols=269  Identities=9%  Similarity=0.010  Sum_probs=145.6

Q ss_pred             ccceeecc-CCCeEEEEcCCEEEEEECCCCC-eeeEEE-ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          143 YLNLLDWG-SSNVLAIALGSTVYLWDASDGT-TSELVT-VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       143 ~~~~~~~~-~~~~la~~~d~~v~iwd~~~~~-~~~~~~-~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      .+..+.+. ++.+++++..+.|+. ..+.|+ ...+.. .......+.+|.+.+ +..++ ++..|.|.. ....++.-.
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~  112 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS  112 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred             cEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence            35566664 466777888887644 334443 322211 112244689999986 44444 456665544 333344333


Q ss_pred             EecC--CCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          220 TLRG--GHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       220 ~~~~--~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      .+..  .+...+..+.+ ++..++.++.+|.|..- ...+..-......+...+..+.+.+++.+++.+...+..+-+|-
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~  191 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP  191 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC
Confidence            3321  13345667766 33444445556654321 12232222333345567889999999988877654433333442


Q ss_pred             CCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----CCCeEEEEEcCCC
Q 012679          297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----GSQVCALLWNKNE  371 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----~~~v~~~~~s~~~  371 (458)
                      . +..   .  ...-......+..+++.+++ .+++.+   .+|.+++.+...|+.-..+..     ...+..+.+.+++
T Consensus       192 g-G~t---W--~~~~~~~~~~~~~~~~~~~g-~~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~  261 (327)
T 2xbg_A          192 G-QTA---W--EPHNRTTSRRLHNMGFTPDG-RLWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN  261 (327)
T ss_dssp             T-CSS---C--EEEECCSSSCEEEEEECTTS-CEEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred             C-CCc---e--eECCCCCCCccceeEECCCC-CEEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC
Confidence            1 111   0  11112345677889998865 455544   577777765332333222221     2347889999877


Q ss_pred             CeEEEEecCCCCcEEEEeCCCceeeEEEe---CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMVKMAELS---GHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ..+++  | .++.| ++....++.-..+.   .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus       262 ~~~~~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          262 EVWLA--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             CEEEE--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             EEEEE--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            76665  3 35666 44444444333333   234567888887555 466678899766554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.36  E-value=7.9e-05  Score=78.26  Aligned_cols=242  Identities=10%  Similarity=0.030  Sum_probs=131.7

Q ss_pred             CEEEEEEc-CCCCEEEEEecC-C----eEEEEeCCCc-eeeEEecCCCcccEEEEEe--CCCeEEEEeCC-----CcEEE
Q 012679          185 PVTSVNWA-PDGRHIAIGLNN-C----QVQLWDSTAN-RQLRTLRGGHRSRVGSLAW--NNHILTTGGMD-----GLIIN  250 (458)
Q Consensus       185 ~V~~v~~s-~~g~~la~g~~d-g----~v~iwd~~~~-~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d-----g~i~v  250 (458)
                      .+...+|| |||++||.+... |    .|+++|+.++ +.+...   -......++|  +++.|+....+     ..|+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 999999876543 3    4999999998 633210   1112345778  46666666554     26888


Q ss_pred             EEccCCCee-EEEEc-ccccceEeEEEcCCCCEEEEEEC---CCcEEEEeCCCCCCCCcceeeeeec-ccccceeEEEec
Q 012679          251 NDVRVRDHI-VETYR-GHNQEVCGLKWSASGQQLASGGN---DNLLHIWDRSMASSNSVTQWLHRLE-EHTSAVKAIAWC  324 (458)
Q Consensus       251 wd~~~~~~~-~~~~~-~h~~~v~~l~~spd~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~  324 (458)
                      +++.++... ...+. ........+.|+|||++|+..+.   ...|.++|+..+.....   +..+. .......++.|+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~---~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT---LEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC---EEESSCCCTTCCEEEEEE
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce---eEEeecCCCCceEEEeee
Confidence            888765421 12222 22334668899999999887663   44688889876532100   02222 233445555554


Q ss_pred             CCCCcEEEEeCC--CCCCeEEEEECCCC-CeeE-EEeCCCC--eEEEEEcCCCCeEEEEecCCCCc--EEEEeC------
Q 012679          325 PFQSNLLATGGG--GGDRCIKFWNTHTG-ACLN-SVDTGSQ--VCALLWNKNERELLSSHGFTQNQ--LTLWKY------  390 (458)
Q Consensus       325 p~~~~ll~s~~g--~~d~~i~lwd~~~~-~~~~-~~~~~~~--v~~~~~s~~~~~l~~~~g~~d~~--i~iwd~------  390 (458)
                      . +..+++....  .....|..+|+.++ .... .+.....  +..+.+  .+..|+.+. ..++.  |.++++      
T Consensus       329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~-~~~g~~~l~~~dl~~~~~~  404 (751)
T 2xe4_A          329 G-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAG-RRAGLTRIWTMMADSQDGV  404 (751)
T ss_dssp             T-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEE-EETTEEEEEEEECCTTTSC
T ss_pred             e-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEE-EeCCEEEEEEEeccccccc
Confidence            4 5666655431  12347888888753 3222 3333333  344444  455665543 34554  556665      


Q ss_pred             -CCceeeEEEeCC-CCcEEEEEE----cCCCC-EEEEEeCC---CcEEEEecCCCC
Q 012679          391 -PSMVKMAELSGH-TSRVLFMAQ----SPDGC-TVASAAAD---ETLRFWNVFGAP  436 (458)
Q Consensus       391 -~~~~~~~~~~~h-~~~V~~l~~----spdg~-~l~s~s~D---g~i~iW~~~~~~  436 (458)
                       ..++....+.-. ...+..+.+    ++++. ++++.+..   ..+..+|+.+++
T Consensus       405 ~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          405 FKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             CCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence             333313333211 122333432    34554 44444433   356667765543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.35  E-value=0.00024  Score=69.37  Aligned_cols=235  Identities=8%  Similarity=-0.016  Sum_probs=139.5

Q ss_pred             CEEEEEEcCC--CCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCC-----cEEEEEccC
Q 012679          185 PVTSVNWAPD--GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDG-----LIINNDVRV  255 (458)
Q Consensus       185 ~V~~v~~s~~--g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg-----~i~vwd~~~  255 (458)
                      ....|+|+|+  +..|.++...+.|+.+|..++.......  .......++++  ++ |+.+...+     .+...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4678999984  4556666555889999998777654433  44567888884  56 44444321     233333322


Q ss_pred             CCeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          256 RDHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       256 ~~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      .......+. ......+++++| ++.++++-..++.|+.+|...+...   ..+.... ....-..++|+|++..++++-
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~---~~~~~~~-~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT---EEEVMMD-TKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE---EEEEECS-CCSSCEEEEECTTSSEEEEEE
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE---EEEeccC-CCCCcccEEEeCCCCEEEEEe
Confidence            211011111 234456788999 6766666666788999998754320   0011111 112234699999988788776


Q ss_pred             CCCCCCeEEEEECC--CCCee--EEEeC----------------CCCeEEEEE---------cCCCCeEEEEecCCCCcE
Q 012679          335 GGGGDRCIKFWNTH--TGACL--NSVDT----------------GSQVCALLW---------NKNERELLSSHGFTQNQL  385 (458)
Q Consensus       335 ~g~~d~~i~lwd~~--~~~~~--~~~~~----------------~~~v~~~~~---------s~~~~~l~~~~g~~d~~i  385 (458)
                      .  ..+.|+.++..  ++...  ..+..                -.....+++         .+++..+++  ....+.|
T Consensus       292 ~--~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I  367 (433)
T 4hw6_A          292 N--GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTV  367 (433)
T ss_dssp             T--TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEE
T ss_pred             C--CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEE
Confidence            5  67899998865  33211  11111                123567888         566665555  4467789


Q ss_pred             EEEeCCCceeeEEEeCC------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEecC
Q 012679          386 TLWKYPSMVKMAELSGH------------------TSRVLFMAQS-PDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       386 ~iwd~~~~~~~~~~~~h------------------~~~V~~l~~s-pdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +.++. ++. +.++.+.                  -.....|+++ ++|.++++-.....|+..++.
T Consensus       368 ~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          368 RVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            99984 553 3333321                  1236789999 677777666667788887763

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.33  E-value=0.0012  Score=69.09  Aligned_cols=235  Identities=10%  Similarity=0.013  Sum_probs=144.7

Q ss_pred             cCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCc----eeeEEecCC
Q 012679          150 GSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTAN----RQLRTLRGG  224 (458)
Q Consensus       150 ~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~----~~~~~~~~~  224 (458)
                      ....++..+....|+..++.......+.   .....+..|+|.+.+..|+.. ...+.|+.+++...    .....+.. 
T Consensus       393 ~~~p~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-  468 (791)
T 3m0c_C          393 GSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-  468 (791)
T ss_dssp             TSCCEEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-
T ss_pred             ccccccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-
Confidence            3345667777788888888876653332   235568899999865555544 45678988888753    22222221 


Q ss_pred             CcccEEEEE--eCC-CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCC
Q 012679          225 HRSRVGSLA--WNN-HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMA  299 (458)
Q Consensus       225 ~~~~v~~l~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~  299 (458)
                      .......|+  |.+ +++++-...+.|.+.++..... ...+........+|++.|.+.+|+....  .+.|.+.++...
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            223333444  444 5666666788999999975543 2233334456889999998666666553  267888887654


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLS  376 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~  376 (458)
                      ..      ...+...-.....|++.+.+..|+++-.  ..+.|...++........+...   ....+|++.  +..|+.
T Consensus       548 ~~------~~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYw  617 (791)
T 3m0c_C          548 DI------YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW  617 (791)
T ss_dssp             CE------EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred             ce------EEEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEE
Confidence            32      1222223356789999988888888765  6789999998655544444332   234566653  445555


Q ss_pred             EecCCCCcEEEEeCCCceeeEEEe
Q 012679          377 SHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       377 ~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      + ....+.|...+..+++.+..+.
T Consensus       618 t-D~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          618 T-DIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             E-ETTTTEEEEEETTTCCCCEEEE
T ss_pred             E-ECCCCEEEEEeCCCCcceEEee
Confidence            4 3456788888876765555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.00029  Score=68.72  Aligned_cols=235  Identities=9%  Similarity=0.040  Sum_probs=137.9

Q ss_pred             CEEEEEEcC-CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeC-CC----cEEEEEccCC
Q 012679          185 PVTSVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGM-DG----LIINNDVRVR  256 (458)
Q Consensus       185 ~V~~v~~s~-~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg----~i~vwd~~~~  256 (458)
                      ....|+++| ++..|.++...+.|+.+|+..+.......  .......++++  ++.|+.+.. ++    .+.+.+....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            467899998 46667777665889999988766544333  44567788885  564555543 22    3444443322


Q ss_pred             CeeEEEEcccccceEeEEEcC-CCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          257 DHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      ......+. ......+++++| ++.++++-..++.|..++.......    .+..... ......++|+|++..++++..
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~----~~~~~~~-~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT----PLFTIQD-SGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE----EEEECSS-SSCCEEEEECTTSSEEEEEET
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEEEcCC-CCcceeEEEcCCCCEEEEEEC
Confidence            21112222 133467788999 6776666667789999998754320    1122211 234578999999887877765


Q ss_pred             CCCCCeEEEEECCC--CCe--eEEEeCC----------------CCeE-EEEEc--------CCCCeEEEEecCCCCcEE
Q 012679          336 GGGDRCIKFWNTHT--GAC--LNSVDTG----------------SQVC-ALLWN--------KNERELLSSHGFTQNQLT  386 (458)
Q Consensus       336 g~~d~~i~lwd~~~--~~~--~~~~~~~----------------~~v~-~~~~s--------~~~~~l~~~~g~~d~~i~  386 (458)
                        ..+.|..++...  +..  ...+...                .... .++..        +++..+++  ....+.|+
T Consensus       290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~  365 (430)
T 3tc9_A          290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIR  365 (430)
T ss_dssp             --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEE
T ss_pred             --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEE
Confidence              778999987653  221  1122110                1122 44443        23444444  33567888


Q ss_pred             EEeCCCceeeEEEeCC---------C---------CcEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q 012679          387 LWKYPSMVKMAELSGH---------T---------SRVLFMAQSPD-GCTVASAAADETLRFWNVF  433 (458)
Q Consensus       387 iwd~~~~~~~~~~~~h---------~---------~~V~~l~~spd-g~~l~s~s~Dg~i~iW~~~  433 (458)
                      .++ +++... .+.+.         .         .....|+++|+ |.++++-.....|+.+++.
T Consensus       366 ~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          366 ILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            888 455433 33221         1         24789999994 6666655566778877653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.29  E-value=0.0037  Score=63.86  Aligned_cols=233  Identities=6%  Similarity=-0.073  Sum_probs=147.5

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVG  230 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~  230 (458)
                      ..++..+..+.|+..++++........+.+ -..+..|+|++.+..|..+ ..++.|..+++........+.. ......
T Consensus         6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-g~~~P~   83 (628)
T 4a0p_A            6 EAFLLFSRRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-GLDYPE   83 (628)
T ss_dssp             CCEEEEEETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-SCSCCC
T ss_pred             CcEEEEEeCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-CCCCcc
Confidence            456677788999999998766433333322 3568899999976666554 4578899999876544333332 212334


Q ss_pred             EEE--eC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCcc
Q 012679          231 SLA--WN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       231 ~l~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~~  305 (458)
                      .|+  |. +++.++-...+.|.+.++..... .......-....+|++.|....|.....  .+.|...++.....    
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----  158 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----  158 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----
Confidence            444  44 45556666678899999875543 2222233455789999996666655543  46787777765443    


Q ss_pred             eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcE
Q 012679          306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL  385 (458)
Q Consensus       306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i  385 (458)
                         ..+...-.....|++++++..|+.+-.  ..+.|...|+.................+++..  ..++.+ ....+.|
T Consensus       159 ---~~l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I  230 (628)
T 4a0p_A          159 ---TTLVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSI  230 (628)
T ss_dssp             ---EEEECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEE-ETTTTEE
T ss_pred             ---EEEECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEe-cCCCCEE
Confidence               222223455678999998888888866  77899999997654422223334566777765  345544 3457788


Q ss_pred             EEEeCCCceeeEEE
Q 012679          386 TLWKYPSMVKMAEL  399 (458)
Q Consensus       386 ~iwd~~~~~~~~~~  399 (458)
                      ...|..+++....+
T Consensus       231 ~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          231 ERANKTSGQNRTII  244 (628)
T ss_dssp             EEEETTTCCSCEEE
T ss_pred             EEEECCCCCceEEE
Confidence            88887666544333

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.28  E-value=0.00021  Score=75.09  Aligned_cols=237  Identities=14%  Similarity=0.060  Sum_probs=129.0

Q ss_pred             ccceeecc-C-CCeEEEEcC--C----EEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEE
Q 012679          143 YLNLLDWG-S-SNVLAIALG--S----TVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQ  208 (458)
Q Consensus       143 ~~~~~~~~-~-~~~la~~~d--~----~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~  208 (458)
                      .+....|+ + +..++.+.+  |    .|+++|+.++ +... ..+..   ....++|+|||+.|+....+     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            56678899 7 445554432  2    5999999998 6311 01111   13468899999988888765     2688


Q ss_pred             EEeCCCcee--eEEecCCCcccEEEEEe--CCCeEEEEeC---CCcEEEEEccCCCeeE--EEE-cccccceEeEEEcCC
Q 012679          209 LWDSTANRQ--LRTLRGGHRSRVGSLAW--NNHILTTGGM---DGLIINNDVRVRDHIV--ETY-RGHNQEVCGLKWSAS  278 (458)
Q Consensus       209 iwd~~~~~~--~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~~~~~--~~~-~~h~~~v~~l~~spd  278 (458)
                      ++++.++..  ...+..........+.|  ++++|+..+.   ...|+++|+.++....  ..+ .........+.|+. 
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-  329 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-  329 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-
Confidence            888877642  22332223344567777  5677665542   3468888987652112  222 23344455555544 


Q ss_pred             CCEEEEEEC-C----CcEEEEeCCCCCCCCcceeeee-eccccc--ceeEEEecCCCCcEEEEeCCCCCCe--EEEEEC-
Q 012679          279 GQQLASGGN-D----NLLHIWDRSMASSNSVTQWLHR-LEEHTS--AVKAIAWCPFQSNLLATGGGGGDRC--IKFWNT-  347 (458)
Q Consensus       279 ~~~l~sg~~-d----g~i~iwd~~~~~~~~~~~~~~~-~~~h~~--~v~~l~~~p~~~~ll~s~~g~~d~~--i~lwd~-  347 (458)
                      |..|+..++ +    ..|..+|+.....      ... +..+..  .+..+.+.  +..++++..  .++.  |.++|+ 
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~~~li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~  399 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQPSD------WSHVLVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMAD  399 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTSTTC------CCCEEECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECC
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCCccc------ceeeEECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEecc
Confidence            555544443 3    2577777654211      112 222332  34455554  567777665  6665  556675 


Q ss_pred             ------CCCCeeEEEeCCCC--eEEEEE----cCCCCeEEEEecCC--CCcEEEEeCCCce
Q 012679          348 ------HTGACLNSVDTGSQ--VCALLW----NKNERELLSSHGFT--QNQLTLWKYPSMV  394 (458)
Q Consensus       348 ------~~~~~~~~~~~~~~--v~~~~~----s~~~~~l~~~~g~~--d~~i~iwd~~~~~  394 (458)
                            .+++....+.....  +..+.+    ++++..++......  -..+..+|+.+++
T Consensus       400 ~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          400 SQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             cccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                  34441444443333  333333    34666555433222  2467778877664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.24  E-value=0.0018  Score=67.86  Aligned_cols=230  Identities=12%  Similarity=-0.014  Sum_probs=141.6

Q ss_pred             EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCC---eeEEEEcccccce
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRD---HIVETYRGHNQEV  270 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~~h~~~v  270 (458)
                      +|+.+. ...|+..++........+.  ....+..|+|+   +.++++-...+.|+.+++....   .....+.......
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             cccccc-ccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            444443 3468888887665444443  44566788884   3455565667888888887531   1123333344567


Q ss_pred             EeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          271 CGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       271 ~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .+|++.+.++.| ++-...+.|.+.++.....      ...+.........|++.|....|+.+-.| ..+.|...++..
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG  546 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  546 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------EEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCC
Confidence            789998877555 4555678999999875432      12222334457899999987888887642 237899999875


Q ss_pred             CCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679          350 GACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADET  426 (458)
Q Consensus       350 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~  426 (458)
                      ......+... .....|++++.+..|+.+- ...+.|..+++........+..  .-....+|++..+ .++++-...+.
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD-~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~  624 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  624 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTE
T ss_pred             CceEEEEeCCCCCceEEEEecCCCeEEEEe-CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCE
Confidence            5444444333 5688999998888888764 3567899999865444333332  2234557777433 34444445677


Q ss_pred             EEEEecCCCCcc
Q 012679          427 LRFWNVFGAPQV  438 (458)
Q Consensus       427 i~iW~~~~~~~~  438 (458)
                      |...+..++..+
T Consensus       625 I~~~dk~tG~~~  636 (791)
T 3m0c_C          625 IFSANRLTGSDV  636 (791)
T ss_dssp             EEEEETTTCCCC
T ss_pred             EEEEeCCCCcce
Confidence            777776655443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.19  E-value=1.7e-05  Score=82.43  Aligned_cols=244  Identities=8%  Similarity=-0.044  Sum_probs=143.1

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCC----ceeeEEecCCCcc
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTA----NRQLRTLRGGHRS  227 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~----~~~~~~~~~~~~~  227 (458)
                      .++..+..+.|+..++.+.+...+  +. ....+..|+|.+.+..|+.+. ..+.|+.+++..    ......+.. ...
T Consensus       378 ~~ll~~~~~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~  453 (699)
T 1n7d_A          378 AYLFFTNRHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQ  453 (699)
T ss_dssp             CCBCCCCTTC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC-
T ss_pred             eeEEecCccceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCC
Confidence            344455567888888887664222  22 234567899998777676654 457899999875    222222211 112


Q ss_pred             cEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCC
Q 012679          228 RVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSN  302 (458)
Q Consensus       228 ~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~  302 (458)
                      ....|+++   +.++++-...+.|.++++..... ...+........+|++.|.+.+|+.+..  .+.|.++++..... 
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-  531 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-  531 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-
Confidence            23345543   45555556678899999875432 2222222345678999997665554432  26788777654322 


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---CCCeEEEEEcCCCCeEEEEec
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---GSQVCALLWNKNERELLSSHG  379 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g  379 (458)
                           ...+...-.....|+|+|++..|+++-.  ..+.|..+++........+..   ......+++..+  .|+.+ .
T Consensus       532 -----~~l~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywt-d  601 (699)
T 1n7d_A          532 -----YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWT-D  601 (699)
T ss_dssp             -----CEESCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEE-C
T ss_pred             -----eEEEeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEE-e
Confidence                 1111122344578999998888888876  678999999865333322221   123445555443  55544 3


Q ss_pred             CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679          380 FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS  412 (458)
Q Consensus       380 ~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  412 (458)
                      ...+.|..++..+++.+..+......+..|++.
T Consensus       602 ~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          602 IINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             STTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred             CCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence            467899999988888877765433334455443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.11  E-value=0.007  Score=61.82  Aligned_cols=229  Identities=10%  Similarity=0.000  Sum_probs=147.9

Q ss_pred             EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeE
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL  273 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l  273 (458)
                      +|+.+ ....|+..|+.+......+....-..+..|+|+   +.++++-..++.|..+++..... ...+........++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence            55554 556899999987654444432234567788885   34555666778999998875432 22333223457789


Q ss_pred             EEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe
Q 012679          274 KWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC  352 (458)
Q Consensus       274 ~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~  352 (458)
                      ++.+.+..| ++-...+.|.+.++.....      ...+...-.....|++.|....++.+--| ..+.|...++.....
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~------~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHR------QVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER  158 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTC------EEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcE------EEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCce
Confidence            998765555 4545578899999875432      11122333456899999977888877532 357888888876554


Q ss_pred             eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          353 LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       353 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ...+........+++++++..|+.+- ...+.|..+++..... ..+.........|++.. +..+++-...+.|...|.
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD-~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTD-LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCcceEEEccccCEEEEEE-CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            44445556789999999988888764 3577899999875433 23333334456788865 445555555788888886


Q ss_pred             CCCCc
Q 012679          433 FGAPQ  437 (458)
Q Consensus       433 ~~~~~  437 (458)
                      .++..
T Consensus       236 ~tg~~  240 (628)
T 4a0p_A          236 TSGQN  240 (628)
T ss_dssp             TTCCS
T ss_pred             CCCCc
Confidence            65543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.08  E-value=0.0028  Score=61.74  Aligned_cols=236  Identities=8%  Similarity=0.044  Sum_probs=126.6

Q ss_pred             cceeeccC----CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCC
Q 012679          144 LNLLDWGS----SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTA  214 (458)
Q Consensus       144 ~~~~~~~~----~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~  214 (458)
                      ...+.|++    ++|+.+-..+.|+.+|..++++..+   .........++|+++|+ |+++...+     .+...+...
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            44677775    4455554458999999988875332   33455689999999999 55554322     233333222


Q ss_pred             ceee-EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEE-ECC
Q 012679          215 NRQL-RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASG-GND  288 (458)
Q Consensus       215 ~~~~-~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg-~~d  288 (458)
                      +... ..+.  .-.....++++   +.++++-..++.|+.+|..++......+. +....-..++|+|+++.|..+ ...
T Consensus       217 ~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             Ceecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            1110 1111  11223344553   45555555678899999875543112211 112223469999999955544 456


Q ss_pred             CcEEEEeCCCC--CCCCcceeeeeec-----------ccccceeEEEe---------cCCCCcEEEEeCCCCCCeEEEEE
Q 012679          289 NLLHIWDRSMA--SSNSVTQWLHRLE-----------EHTSAVKAIAW---------CPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       289 g~i~iwd~~~~--~~~~~~~~~~~~~-----------~h~~~v~~l~~---------~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      +.|+.+++...  .............           ..-.....+++         .+ ...++++-.  ..+.|+.++
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~--~n~~I~~~~  371 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDR--DSHTVRVLT  371 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEET--TTTEEEEEC
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEEC--CCCEEEEEC
Confidence            78999886532  1100000000000           01123456888         44 456666654  678899998


Q ss_pred             CCCCCeeEEEeCC------------------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          347 THTGACLNSVDTG------------------SQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       347 ~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      . +|.........                  .....++++|....|+++ -..++.|+.+++
T Consensus       372 ~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~  431 (433)
T 4hw6_A          372 P-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG-DCDNHRVRKIAP  431 (433)
T ss_dssp             T-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred             C-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE-eCCCCEEEEEec
Confidence            5 55433322111                  136688888444444443 334566776654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.0041  Score=61.11  Aligned_cols=248  Identities=10%  Similarity=0.006  Sum_probs=143.3

Q ss_pred             CEEEEEEcC-CCCEEEEEec-CCeEEEEeCCCceeeEEecCC--CcccEEEEEe-------C--CCeEEEEeCCC-----
Q 012679          185 PVTSVNWAP-DGRHIAIGLN-NCQVQLWDSTANRQLRTLRGG--HRSRVGSLAW-------N--NHILTTGGMDG-----  246 (458)
Q Consensus       185 ~V~~v~~s~-~g~~la~g~~-dg~v~iwd~~~~~~~~~~~~~--~~~~v~~l~~-------~--~~~l~sg~~dg-----  246 (458)
                      ....|+|+| ++..|.++.. .+.|++.|+.++........+  .......++|       +  +..|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            478899998 4555555544 467899998887765544431  2346888999       4  66566665544     


Q ss_pred             --cEEEEEccCCCeeE-----EEEcccccceEeEEEcCC-CCEEEEEECCCcEEEEeCC-------CCCCCCc-------
Q 012679          247 --LIINNDVRVRDHIV-----ETYRGHNQEVCGLKWSAS-GQQLASGGNDNLLHIWDRS-------MASSNSV-------  304 (458)
Q Consensus       247 --~i~vwd~~~~~~~~-----~~~~~h~~~v~~l~~spd-~~~l~sg~~dg~i~iwd~~-------~~~~~~~-------  304 (458)
                        .|.+++........     ..+.. .....+++++|+ +.++++-..++.|..+|+.       ++.....       
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              25666533311111     12221 224467889995 5555566677889999987       4432000       


Q ss_pred             -ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC--CCCCee--EEEeC--C--------------CCeE
Q 012679          305 -TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT--HTGACL--NSVDT--G--------------SQVC  363 (458)
Q Consensus       305 -~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~--~~~~~~--~~~~~--~--------------~~v~  363 (458)
                       ...+... ........|+|+|++..++++-.  ..+.|+.++.  .++...  ..+..  +              ....
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence             0112222 12334578999999887777655  6788998654  333221  12211  0              1234


Q ss_pred             -EEEEc-------CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC------------------------CCcEEEEEE
Q 012679          364 -ALLWN-------KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH------------------------TSRVLFMAQ  411 (458)
Q Consensus       364 -~~~~s-------~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h------------------------~~~V~~l~~  411 (458)
                       .++..       .++..+++  -...+.|+.++ +++ .+.++-+.                        -.....|++
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav  451 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY  451 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred             EEEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence             34443       34444444  44578899998 555 34444322                        123678999


Q ss_pred             cCC-CCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          412 SPD-GCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       412 spd-g~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +++ |.++++=.....|+.+++.....+..
T Consensus       452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          452 DDVKEMFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred             ECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence            997 77767666778899999877665544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.0031  Score=61.35  Aligned_cols=234  Identities=8%  Similarity=0.065  Sum_probs=128.7

Q ss_pred             ceeeccC---CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-C----eEEEEeCCCce
Q 012679          145 NLLDWGS---SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-C----QVQLWDSTANR  216 (458)
Q Consensus       145 ~~~~~~~---~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-g----~v~iwd~~~~~  216 (458)
                      ..+.+++   ++|+++...+.|+.+|..++.+..+.   ........|+|+++|++|+++... +    .+.+++. .+.
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            4456663   45666666688999999887654332   245668999999999977766542 1    2333443 332


Q ss_pred             ee--EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCc
Q 012679          217 QL--RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNL  290 (458)
Q Consensus       217 ~~--~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~  290 (458)
                      ..  ..+.  .......++++   +.++++-..++.|..++............+.......++|+|++++|. +-...+.
T Consensus       216 ~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          216 FKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            21  2222  11223445553   455666667789999998755431111112223467899999999554 4456788


Q ss_pred             EEEEeCCCCCCCCcceeeeeeccc---------------cccee-EEEecC-------CCCcEEEEeCCCCCCeEEEEEC
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEH---------------TSAVK-AIAWCP-------FQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~-~l~~~p-------~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      |..++........  .....+.+.               -.... .++..+       ....++++-.  ..+.|+.++ 
T Consensus       294 I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~--~n~~I~~i~-  368 (430)
T 3tc9_A          294 ILRSDYDWKTKRL--TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR--ENHCIRILT-  368 (430)
T ss_dssp             EEEEEEETTTTEE--CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG--GGTEEEEEC-
T ss_pred             EEEEeCCcccccc--cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC--CCcEEEEEC-
Confidence            9998765321100  000111100               01112 344432       1245666544  567888888 


Q ss_pred             CCCCeeEEEeC---------C---------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeC
Q 012679          348 HTGACLNSVDT---------G---------SQVCALLWNKNERELLSSHGFTQNQLTLWKY  390 (458)
Q Consensus       348 ~~~~~~~~~~~---------~---------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~  390 (458)
                      .+|........         .         .....+++++++..|+++ ...++.|+.++.
T Consensus       369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~  428 (430)
T 3tc9_A          369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGY  428 (430)
T ss_dssp             TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred             CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEcc
Confidence            45644333322         1         147789999865555554 334566776654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.03  E-value=0.0064  Score=62.03  Aligned_cols=232  Identities=10%  Similarity=-0.020  Sum_probs=134.6

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeE-EecCCCcccEE
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLR-TLRGGHRSRVG  230 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~-~~~~~~~~~v~  230 (458)
                      -++.-+....|+..++............ ....+..++|++.+..|..+. ..+.|..+++....... .+.. .-....
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~-~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-~~~~P~   87 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPD   87 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------CB-CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-SCSCEE
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEEc-CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-CCCCcC
Confidence            3556667788899988765321122222 245688999999777776664 45789889887653222 2322 224456


Q ss_pred             EEEeC---CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCcc
Q 012679          231 SLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSVT  305 (458)
Q Consensus       231 ~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~~  305 (458)
                      .++++   ++++++-...+.|.+.++..... .......-....+|++.|.+.+|.....  .+.|...++.....    
T Consensus        88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----  162 (619)
T 3s94_A           88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----  162 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----
T ss_pred             eEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----
Confidence            66663   45556666778999999876543 2222234455778999997666655553  35677667654332    


Q ss_pred             eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCc
Q 012679          306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQ  384 (458)
Q Consensus       306 ~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~  384 (458)
                        .......-.....|++++++..|+.+-.  ..+.|...|+.......... .......+++..+  .++.+ ....+.
T Consensus       163 --~~l~~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~  235 (619)
T 3s94_A          163 --FIIINSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHS  235 (619)
T ss_dssp             --EEEECSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCS
T ss_pred             --EEEEeCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCE
Confidence              1112223345688999998888888765  67889999986543332222 1223356666554  55554 445678


Q ss_pred             EEEEeCCCceeeEE
Q 012679          385 LTLWKYPSMVKMAE  398 (458)
Q Consensus       385 i~iwd~~~~~~~~~  398 (458)
                      |...|..+++....
T Consensus       236 V~~~d~~tg~~~~~  249 (619)
T 3s94_A          236 ILACNKYTGEGLRE  249 (619)
T ss_dssp             EEEEESSSCCCCEE
T ss_pred             EEEEECCCCcccEE
Confidence            88888876654433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.03  E-value=0.0046  Score=58.42  Aligned_cols=232  Identities=12%  Similarity=0.077  Sum_probs=124.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEec--CCCcccEEEEEeCCC-----eEEEEeCC------Cc
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLR--GGHRSRVGSLAWNNH-----ILTTGGMD------GL  247 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~--~~~~~~v~~l~~~~~-----~l~sg~~d------g~  247 (458)
                      -.....++|.|+|++ +++..+|.|.+++  .++.  +..+.  .........|++++.     .|..+...      +.
T Consensus        30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345789999999984 5556779999998  3332  22221  112356788999653     55555432      57


Q ss_pred             EEEEEccCCC-----eeEEEEc---ccccceEeEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCCCCC-c-
Q 012679          248 IINNDVRVRD-----HIVETYR---GHNQEVCGLKWSASGQQLASGGN-------------DNLLHIWDRSMASSNS-V-  304 (458)
Q Consensus       248 i~vwd~~~~~-----~~~~~~~---~h~~~v~~l~~spd~~~l~sg~~-------------dg~i~iwd~~~~~~~~-~-  304 (458)
                      |..++.....     .++..+.   +.......++|.|||.+.++.+.             .|.|.-++....-... . 
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888876431     1222232   11123468999999987666442             1456666654310000 0 


Q ss_pred             -----ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC-------eEEEEECCC----------------CCeeEEE
Q 012679          305 -----TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR-------CIKFWNTHT----------------GACLNSV  356 (458)
Q Consensus       305 -----~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-------~i~lwd~~~----------------~~~~~~~  356 (458)
                           .....-..++ .....++|+|+...|+++-.| .++       .|.+.....                ..++..+
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                 0000011123 235678999965666665432 222       233332111                0122233


Q ss_pred             eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee------eEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          357 DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK------MAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       357 ~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~------~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      ........++| .++..+++  ....+.|...++.....      ...+..-..++..+++.|||.+.++..
T Consensus       265 ~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            23344567777 35555444  34566777777653321      122222236789999999998777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.02  E-value=0.028  Score=61.51  Aligned_cols=275  Identities=10%  Similarity=0.054  Sum_probs=156.1

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCC------CCEEEEEec-CCeEEEEeCCCce
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD------GRHIAIGLN-NCQVQLWDSTANR  216 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~------g~~la~g~~-dg~v~iwd~~~~~  216 (458)
                      +...+-+... ++++.++.+.++.+..+++.......- ...|.|+++.|.      ++++|+|.. |++|+|+++.+.+
T Consensus       516 I~~As~n~~~-vvva~g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          516 ISVASCNSSQ-VVVAVGRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             CCEEEECSSE-EEEEETTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEeCCCE-EEEEECCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            4444444333 444457888888887766554444332 567999999863      479999997 9999999998876


Q ss_pred             eeEEecCCCcccEEEEEe---C-CCeEEEEeCCCcEEEEEccC--CCee--EEEEcccccceEeEEEcCCCCEEEEEECC
Q 012679          217 QLRTLRGGHRSRVGSLAW---N-NHILTTGGMDGLIINNDVRV--RDHI--VETYRGHNQEVCGLKWSASGQQLASGGND  288 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~---~-~~~l~sg~~dg~i~vwd~~~--~~~~--~~~~~~h~~~v~~l~~spd~~~l~sg~~d  288 (458)
                      .+....-+......++..   . ..+|..|-.||.+.-+.+..  +...  .....| ..++.=..+...+..-+.+..+
T Consensus       594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~  672 (1158)
T 3ei3_A          594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD  672 (1158)
T ss_dssp             EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS
T ss_pred             eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC
Confidence            665433212233444433   3 35788999999987666542  2211  112223 3445444444444443334445


Q ss_pred             CcEEEEeCCCCCCCCcceeeeeeccccccee-EEEecCCC--CcEEEEeCCCCCCeEEEEECCCC--CeeEEEeCCCCeE
Q 012679          289 NLLHIWDRSMASSNSVTQWLHRLEEHTSAVK-AIAWCPFQ--SNLLATGGGGGDRCIKFWNTHTG--ACLNSVDTGSQVC  363 (458)
Q Consensus       289 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~p~~--~~ll~s~~g~~d~~i~lwd~~~~--~~~~~~~~~~~v~  363 (458)
                      ....++--+. ..    . ...+.  ...+. ...|+..+  ..++++    .++.+++..+.+.  -.++++..+..+.
T Consensus       673 rp~liy~~~~-~l----~-~s~l~--~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tpr  740 (1158)
T 3ei3_A          673 RPTVIYSSNH-KL----V-FSNVN--LKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPR  740 (1158)
T ss_dssp             SCEEEEESSS-SE----E-EEEBS--SSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEE
T ss_pred             CCEEEEEcCC-ce----E-EeccC--hHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCce
Confidence            5555554321 11    0 11111  11222 23343321  233333    3556888877543  2456677788889


Q ss_pred             EEEEcCCCCeEEEEecCC-----------------------------------------------CCcEEEEeCCCceee
Q 012679          364 ALLWNKNERELLSSHGFT-----------------------------------------------QNQLTLWKYPSMVKM  396 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~-----------------------------------------------d~~i~iwd~~~~~~~  396 (458)
                      .++++|..+.+++.+...                                               ...|++.|..+++.+
T Consensus       741 ri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i  820 (1158)
T 3ei3_A          741 KICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVL  820 (1158)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEE
Confidence            999999887665543110                                               124777887777776


Q ss_pred             EEEeCC-CCcEEEEEE---cC-CCCEEEEEe----------CCCcEEEEecC
Q 012679          397 AELSGH-TSRVLFMAQ---SP-DGCTVASAA----------ADETLRFWNVF  433 (458)
Q Consensus       397 ~~~~~h-~~~V~~l~~---sp-dg~~l~s~s----------~Dg~i~iW~~~  433 (458)
                      ..+.-. ...+.+++.   .. ...+|+.|+          ..|.|.++++.
T Consensus       821 ~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          821 HAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             EEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred             EEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence            655422 234555553   22 246888776          24789999986

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.01  E-value=0.0021  Score=59.86  Aligned_cols=184  Identities=9%  Similarity=0.124  Sum_probs=117.7

Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCC----CCE--EEE-EE-C--CCcEEEEeCCCCCCCCcce
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS----GQQ--LAS-GG-N--DNLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd----~~~--l~s-g~-~--dg~i~iwd~~~~~~~~~~~  306 (458)
                      .+++.....+-+.+||+ .++. +..+..  +.++.+..-|+    |+.  ++. .. .  +++|.+|++......    
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~-l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----  112 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKM-LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----  112 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCE-EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred             cEEEEEcCCCCEEEEcC-CCcE-EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence            55666677889999999 3443 455543  55666666652    222  333 33 3  589999976422211    


Q ss_pred             eeeeec-------ccccceeEEEe--cCCCC-cEEEEeCCCCCCeEEEEEC-------CCCCeeEEEeCCCCeEEEEEcC
Q 012679          307 WLHRLE-------EHTSAVKAIAW--CPFQS-NLLATGGGGGDRCIKFWNT-------HTGACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       307 ~~~~~~-------~h~~~v~~l~~--~p~~~-~ll~s~~g~~d~~i~lwd~-------~~~~~~~~~~~~~~v~~~~~s~  369 (458)
                       +..+.       .....+..+++  +|... ..+++..  .+|.+..|++       .+.+.++++..++++-.+...+
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd  189 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD  189 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence             22221       11155667777  77544 2344433  6799999988       2346788899999999999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCC-----CceeeEEEe-CCC-CcEEEEEE--cCCCC-EEEEEe-CCCcEEEEecC
Q 012679          370 NERELLSSHGFTQNQLTLWKYP-----SMVKMAELS-GHT-SRVLFMAQ--SPDGC-TVASAA-ADETLRFWNVF  433 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~-----~~~~~~~~~-~h~-~~V~~l~~--spdg~-~l~s~s-~Dg~i~iW~~~  433 (458)
                      ....|++  +.++..|..++..     +.+.+..+. ++- ..+..|++  .++|+ +|++++ .+.++.+||..
T Consensus       190 ~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999998  4466556666644     345565542 222 46888888  55666 666555 67899999986

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.00  E-value=0.0051  Score=57.43  Aligned_cols=232  Identities=11%  Similarity=0.120  Sum_probs=125.8

Q ss_pred             ccccceeeccCCCeEEEEcCCEEEEEECCCCC-eeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          141 DYYLNLLDWGSSNVLAIALGSTVYLWDASDGT-TSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       141 d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      +..++.+.++++.+++++..+.|+.- .+.|+ ...+.....+.+.+..+.+.+++..++++ .+|.|.. ....++.-.
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~  155 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ  155 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred             CccEEEEEecCCeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence            34566677777778888888866653 33343 32222211233567888887777766655 4554432 222344333


Q ss_pred             EecCCCcccEEEEEeC--CCeEEEEeCCCcEEEE-EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          220 TLRGGHRSRVGSLAWN--NHILTTGGMDGLIINN-DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vw-d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      .+.......+..+.+.  +.+++.+ .+|.+..- |-. +..-...-......+..+.+.+++..++ ++.+|.+++.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~  232 (327)
T 2xbg_A          156 ALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDP  232 (327)
T ss_dssp             EEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEET
T ss_pred             EeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecC
Confidence            3333356678888884  4455444 55555443 321 1111111234456788899999887654 556788877642


Q ss_pred             CCCCCCCcceeeeee-cccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCC
Q 012679          297 SMASSNSVTQWLHRL-EEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNE  371 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~  371 (458)
                      ..+..   ...+..- ..+...+.++++.++ ..+++++   .++.| ++....|+.-..+.    ....+..+.|.+++
T Consensus       233 D~G~t---W~~~~~~~~~~~~~~~~v~~~~~-~~~~~~g---~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          233 DNSEN---WGELLSPLRRNSVGFLDLAYRTP-NEVWLAG---GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD  304 (327)
T ss_dssp             TEEEE---ECCCBCTTSSCCSCEEEEEESSS-SCEEEEE---STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred             CCCCe---eEeccCCcccCCcceEEEEecCC-CEEEEEe---CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence            21211   0000000 012235788899884 5566665   46666 44445554443333    23567888887655


Q ss_pred             CeEEEEecCCCCcEEEEe
Q 012679          372 RELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd  389 (458)
                      ..+++  | .+|.|.-++
T Consensus       305 ~~~~~--G-~~G~i~~~~  319 (327)
T 2xbg_A          305 QGFIL--G-QKGILLRYV  319 (327)
T ss_dssp             EEEEE--C-STTEEEEEC
T ss_pred             ceEEE--c-CCceEEEEc
Confidence            54443  4 577666554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.97  E-value=0.0085  Score=53.50  Aligned_cols=198  Identities=13%  Similarity=0.157  Sum_probs=124.9

Q ss_pred             CcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEc-ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          225 HRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYR-GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       225 ~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      -...+..++|+  ++ ++++...++.|...|.. +. +...+. +-....-+|++.+++.++++.-.++.+.++++....
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            45679999996  34 55567788999999987 44 344442 223567889999988876766677889999876654


Q ss_pred             CCCcceeeeee----cccccceeEEEecCCCCcEEEEeCCCCCC-eEEEEEC-CCCCeeEEEe--------CCCCeEEEE
Q 012679          301 SNSVTQWLHRL----EEHTSAVKAIAWCPFQSNLLATGGGGGDR-CIKFWNT-HTGACLNSVD--------TGSQVCALL  366 (458)
Q Consensus       301 ~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~ll~s~~g~~d~-~i~lwd~-~~~~~~~~~~--------~~~~v~~~~  366 (458)
                      ...... ...+    .........|+|+|.+..++++..  .+. .|..|+- .....+..+.        .-..+.+++
T Consensus       103 ~i~~~~-~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          103 EVKILK-KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             CEEEEE-EEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             eeeeee-eeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            311001 1111    123455789999998877777653  333 5666651 1111222221        123578999


Q ss_pred             EcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCC---------CcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          367 WNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHT---------SRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       367 ~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~---------~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ++|....+++.+. ....|.++|... +.+..+.-..         ...-.|+|.++|+..++ ++-+  .||.+
T Consensus       180 ~dp~tg~lliLS~-~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSH-ESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRF  249 (255)
T ss_dssp             EETTTTEEEEEET-TTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEE
T ss_pred             EcCCCCeEEEEEC-CCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEE
Confidence            9998887777643 678889999664 4444432111         25689999999985554 6665  44544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.94  E-value=0.0072  Score=61.66  Aligned_cols=227  Identities=12%  Similarity=0.059  Sum_probs=131.8

Q ss_pred             cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEE-EEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILT-TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG  279 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~  279 (458)
                      ....|+..|+........+....-.....++|+  +..|+ +-...+.|..+++.........+........++++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            345788888876532122221134456778774  44444 444567888888875432123333333568899999865


Q ss_pred             CEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-
Q 012679          280 QQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-  357 (458)
Q Consensus       280 ~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-  357 (458)
                      +.| ++-...+.|.+.++.....      ...+...-.....|++.|.++.++.+--| ..+.|...++........+. 
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~  168 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLR------KVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINS  168 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSC------EEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred             CEEEEEeCCCCEEEEEECCCCCE------EEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeC
Confidence            555 4445678999999876433      11222334457799999987888887632 34677777776433333332 


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       358 ~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      .......+++++++..|+.+-. ..+.|..+++..........+......+|++..+ ...++-...+.|...|..++..
T Consensus       169 ~~~~P~Glald~~~~~LY~aD~-~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          169 EIYWPNGLTLDYEEQKLYWADA-KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             SCSSEEEEEEETTTTEEEEEET-TTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             CCCCCcEEEEEccCCEEEEEeC-CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            3456789999998888887643 5678999998765443333322223356777655 4444445677888888876654


Q ss_pred             c
Q 012679          438 V  438 (458)
Q Consensus       438 ~  438 (458)
                      .
T Consensus       247 ~  247 (619)
T 3s94_A          247 L  247 (619)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.89  E-value=7.6e-05  Score=77.51  Aligned_cols=224  Identities=11%  Similarity=-0.036  Sum_probs=128.6

Q ss_pred             CCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEE-eCCCcEEEEEccCC---CeeEEEEcccccceEeEEEcC
Q 012679          204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTG-GMDGLIINNDVRVR---DHIVETYRGHNQEVCGLKWSA  277 (458)
Q Consensus       204 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg-~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~l~~sp  277 (458)
                      .+.|+..++.+.+....+.  ....+..++|+  ...|+.. ...+.|+.+++...   ......+........+|++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             ccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            4578888887766544433  23345677774  3444444 45678999988751   111112211223456788886


Q ss_pred             CC-CEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE
Q 012679          278 SG-QQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV  356 (458)
Q Consensus       278 d~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~  356 (458)
                      .+ +++++-...+.|.++++.....      ...+.........|++.|.+..|+++..+ ..+.|..+++........+
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~  535 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV  535 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEES
T ss_pred             eCCcEEEEeccCCeEEEEecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEE
Confidence            44 4445545678899999765432      11122223456789999987777776431 2367888777533222221


Q ss_pred             e-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          357 D-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       357 ~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      . .-.....|+|++++..|+.+. ...+.|.++++........+.  ........|++..+ .++++....+.|..++..
T Consensus       536 ~~~l~~PnGlavd~~~~~LY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          536 TENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             CSSCSSCCCEEECTTTCCEEEEE-TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred             eCCCCCccEEEEeccCCEEEEEe-cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence            1 234467899999888777764 357789999986533322222  11223445666544 455555567889999876


Q ss_pred             CCCcc
Q 012679          434 GAPQV  438 (458)
Q Consensus       434 ~~~~~  438 (458)
                      ++...
T Consensus       614 ~G~~~  618 (699)
T 1n7d_A          614 TGSDV  618 (699)
T ss_dssp             TEEEE
T ss_pred             CCCce
Confidence            55443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.88  E-value=0.0074  Score=56.16  Aligned_cols=198  Identities=11%  Similarity=0.168  Sum_probs=124.8

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe------CCC---eEEEEeC---CCcEEEEEccCCCeeEE
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW------NNH---ILTTGGM---DGLIINNDVRVRDHIVE  261 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~------~~~---~l~sg~~---dg~i~vwd~~~~~~~~~  261 (458)
                      ...+++.....+-+.+||+ +++.++.+..   .+++.+..      .+.   ++++..+   +..|.+|++......+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            3455666667789999999 8888888864   33444333      332   3344444   47899997742222233


Q ss_pred             EEcc------cc-cceEeEEE--cCC-CC-EEEEEECCCcEEEEeCCCCCC-CCcceeeeeecccccceeEEEecCCCCc
Q 012679          262 TYRG------HN-QEVCGLKW--SAS-GQ-QLASGGNDNLLHIWDRSMASS-NSVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       262 ~~~~------h~-~~v~~l~~--spd-~~-~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      .+..      .. ..+.++++  +|. ++ ++++...+|.+..|++..... ....+.+.++.- ...+..++..+....
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence            3321      11 56777888  774 44 677888899999999854211 112233555543 457788888887677


Q ss_pred             EEEEeCCCCCCeEEEEECC-----CCCeeEEEeCC---CCeEEEEE--cCCCC-eEEEEecCCCCcEEEEeCC-CceeeE
Q 012679          330 LLATGGGGGDRCIKFWNTH-----TGACLNSVDTG---SQVCALLW--NKNER-ELLSSHGFTQNQLTLWKYP-SMVKMA  397 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~-----~~~~~~~~~~~---~~v~~~~~--s~~~~-~l~~~~g~~d~~i~iwd~~-~~~~~~  397 (458)
                      |++.-   ++.-|..++..     +++.+..+..+   ..+..|++  .++++ +|++++ -.++.+.+||.. +.+.+.
T Consensus       194 Lyv~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs-QG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          194 LYIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS-QGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             EEEEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE-GGGTEEEEEESSTTCCEEE
T ss_pred             EEEec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc-CCCCEEEEEECCCCCcEEE
Confidence            77654   66667777755     34455555433   46788877  45556 666654 246899999996 677777


Q ss_pred             EEe
Q 012679          398 ELS  400 (458)
Q Consensus       398 ~~~  400 (458)
                      .+.
T Consensus       270 ~f~  272 (355)
T 3amr_A          270 DFR  272 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            773

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.79  E-value=0.025  Score=53.27  Aligned_cols=234  Identities=10%  Similarity=0.055  Sum_probs=128.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce-eeEEec--CCCcccEEEEEeCC-----CeEEEEeC----C----C
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR-QLRTLR--GGHRSRVGSLAWNN-----HILTTGGM----D----G  246 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~-~~~~~~--~~~~~~v~~l~~~~-----~~l~sg~~----d----g  246 (458)
                      -.....|+|.|+|+ |+++..+|.|.++| ..++ .+..+.  .........|++++     ..|..+..    +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            44578999999997 55566779999997 3444 222221  11234678899964     35555443    2    5


Q ss_pred             cEEEEEccCCC------e-eEEEEcc-cccceEeEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCCCC-Cc
Q 012679          247 LIINNDVRVRD------H-IVETYRG-HNQEVCGLKWSASGQQLASGGN-------------DNLLHIWDRSMASSN-SV  304 (458)
Q Consensus       247 ~i~vwd~~~~~------~-~~~~~~~-h~~~v~~l~~spd~~~l~sg~~-------------dg~i~iwd~~~~~~~-~~  304 (458)
                      .|..++.....      . ++..+.. .......|.|.|||.++++.+.             .|.|.-++....-.. ..
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            67777765431      1 1121221 1123467999999987776443             245555554422000 00


Q ss_pred             --ceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-CeEEEEECCC--------C--------CeeEEE-eCCCCeEE
Q 012679          305 --TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-RCIKFWNTHT--------G--------ACLNSV-DTGSQVCA  364 (458)
Q Consensus       305 --~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-~~i~lwd~~~--------~--------~~~~~~-~~~~~v~~  364 (458)
                        ...+. ..++. ....++|+|+...++++-.|... ..|.+...-.        +        .++..+ ........
T Consensus       186 f~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          186 FPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             STTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence              00011 11232 34689999966667776543211 1233322100        0        122333 23445778


Q ss_pred             EEEc-------CCCCeEEEEecCCCCcEEEEeCCCc-eee--EEEe-CCCCcEEEEEEcCCCCEEEEEe
Q 012679          365 LLWN-------KNERELLSSHGFTQNQLTLWKYPSM-VKM--AELS-GHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       365 ~~~s-------~~~~~l~~~~g~~d~~i~iwd~~~~-~~~--~~~~-~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      +.|.       .++..+++  ....+.|...++... +..  ..+. +-..++..+++.|||.+.++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            8884       45655555  446678888888753 221  2332 2346789999999998777664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.78  E-value=0.0037  Score=67.98  Aligned_cols=277  Identities=10%  Similarity=0.098  Sum_probs=172.3

Q ss_pred             cceeeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          144 LNLLDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      +..+.+.++..+++-.    +..|.|.|+.++.......+.     --+.-.+|..+.||.-. ..+++|+|+++...+.
T Consensus        27 f~~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klk  100 (1630)
T 1xi4_A           27 FSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK  100 (1630)
T ss_pred             ccceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc-----chhhccCCCcceEEEec-CCeEEEeehHHhhhhc
Confidence            3344444555555443    347899998876642112122     22344678888777765 5689999999998888


Q ss_pred             EecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEccc----ccceEeEEEcCCCCEEEEEE-------C
Q 012679          220 TLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGH----NQEVCGLKWSASGQQLASGG-------N  287 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~sg~-------~  287 (458)
                      .+.  ....|.--.| +.+.|+..+. ..|+.|++.....+++.+.-|    ...|..-..+++.++++..|       -
T Consensus       101 s~~--~~e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v  177 (1630)
T 1xi4_A          101 AHT--MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV  177 (1630)
T ss_pred             ccc--cCCCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcc
Confidence            877  4557888888 6666666554 579999997654444444444    45677778889999887554       3


Q ss_pred             CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEec--CCCCcEEEEeCC-CCCCeEEEEECCCC---Ce-e--EEE--
Q 012679          288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC--PFQSNLLATGGG-GGDRCIKFWNTHTG---AC-L--NSV--  356 (458)
Q Consensus       288 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~ll~s~~g-~~d~~i~lwd~~~~---~~-~--~~~--  356 (458)
                      .|.+.+|..+....       +.+.+|.+....+...  +....+++.+.- ...+.+++-++...   .. .  +..  
T Consensus       178 ~G~mQLyS~er~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~  250 (1630)
T 1xi4_A          178 VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  250 (1630)
T ss_pred             cceeeeeecccccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence            47888888776543       5567777665554443  222345443321 12368888887543   11 1  011  


Q ss_pred             --eC---CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          357 --DT---GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       357 --~~---~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                        ..   ..-..++..++....++..+  .-|.|.+||+.++..+..-+-....|...+......-++.....|.|.--.
T Consensus       251 ~~~~~~~~Dfpv~~~vs~k~g~iy~it--k~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~  328 (1630)
T 1xi4_A          251 FFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC  328 (1630)
T ss_pred             cCCcccccCcceEEEeccccCEEEEEe--cCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEE
Confidence              11   12245677777777777755  789999999999988776555555555555444333344455777776666


Q ss_pred             cCCCCcc
Q 012679          432 VFGAPQV  438 (458)
Q Consensus       432 ~~~~~~~  438 (458)
                      +.....+
T Consensus       329 v~~~~iv  335 (1630)
T 1xi4_A          329 VEEENII  335 (1630)
T ss_pred             Eccchhh
Confidence            6554433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.77  E-value=0.0027  Score=58.34  Aligned_cols=220  Identities=17%  Similarity=0.202  Sum_probs=115.2

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCce---e--eEEecCCCcccEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANR---Q--LRTLRGGHRSRVG  230 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~---~--~~~~~~~~~~~v~  230 (458)
                      ..+.+||..+.++..+..+.........+.  .++..++.|+.+     ..+.+||..+.+   -  +..+.. ......
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~-~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV-RRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS-CCBSCE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC-Ccccee
Confidence            478999999888765554443222222332  356777777755     368999988765   2  222222 222334


Q ss_pred             EEEeCCCeEEEEeCCC-----cEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 012679          231 SLAWNNHILTTGGMDG-----LIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMA  299 (458)
Q Consensus       231 ~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~  299 (458)
                      ++..++.+++.|+.++     .+.+||+.+..-. +..+.........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       108 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          108 ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            4455788888887543     5888998766532 1112111111122222  67777777754     45888998765


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNEREL  374 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l  374 (458)
                      .-..    +..+........++.+   +..+++.|+...   -..+.+||+.+.+....-.....  -.+++.. +++ |
T Consensus       186 ~W~~----~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i  256 (301)
T 2vpj_A          186 HWTN----VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGR-L  256 (301)
T ss_dssp             EEEE----ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E
T ss_pred             cEEe----CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCE-E
Confidence            4311    1111111111112222   456777765211   24689999988765433222211  1122222 444 4


Q ss_pred             EEEecCCC----CcEEEEeCCCce
Q 012679          375 LSSHGFTQ----NQLTLWKYPSMV  394 (458)
Q Consensus       375 ~~~~g~~d----~~i~iwd~~~~~  394 (458)
                      ++..|...    +.+.+||..+.+
T Consensus       257 ~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          257 YAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EEEcCcCCCcccccEEEEcCCCCe
Confidence            44434332    357788876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.74  E-value=0.0041  Score=57.08  Aligned_cols=228  Identities=14%  Similarity=0.174  Sum_probs=115.3

Q ss_pred             CCCEEEEEe-cC-----CeEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeCC-----CcEEEEEccCCC---
Q 012679          194 DGRHIAIGL-NN-----CQVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGMD-----GLIINNDVRVRD---  257 (458)
Q Consensus       194 ~g~~la~g~-~d-----g~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~---  257 (458)
                      ++.+++.|+ .+     ..+.+||+.+.+-..  .+.. .......+..++.+++.|+.+     ..+.+||+.+..   
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR-KRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh-hhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            445566665 33     368899988765332  1221 222334455678888888865     468899988765   


Q ss_pred             ee-EEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE
Q 012679          258 HI-VETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL  331 (458)
Q Consensus       258 ~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll  331 (458)
                      .. +..+.........+.+  ++++++.|+.+     +.+.+||..+..-..    +..+........++.+   +..++
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iy  163 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM----LGDMQTAREGAGLVVA---SGVIY  163 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE----EEECSSCCBSCEEEEE---TTEEE
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE----CCCCCCCcccceEEEE---CCEEE
Confidence            21 1111111111222222  67777777654     358888987654311    1111111111112222   35677


Q ss_pred             EEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCC----CCcEEEEeCCCceeeE--EEe
Q 012679          332 ATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFT----QNQLTLWKYPSMVKMA--ELS  400 (458)
Q Consensus       332 ~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~----d~~i~iwd~~~~~~~~--~~~  400 (458)
                      +.|+...   -..+.+||..+.+-...-.....  -.+++.. + ..|++..|..    .+.+.+||..+.+-..  .+.
T Consensus       164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            7664111   24688999988765433222211  1122222 3 3455544433    3568999998764332  221


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADE-----TLRFWNVFGA  435 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg-----~i~iW~~~~~  435 (458)
                      ........+.+  ++++++.|+.++     .|.+||+...
T Consensus       242 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          242 TPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            11111122223  677777777653     4667777543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.72  E-value=0.028  Score=51.79  Aligned_cols=157  Identities=9%  Similarity=0.104  Sum_probs=107.7

Q ss_pred             ccccceeeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecC----CC--CCEEEEEE---cCCCCEEEEEec-----
Q 012679          141 DYYLNLLDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDD----EN--GPVTSVNW---APDGRHIAIGLN-----  203 (458)
Q Consensus       141 d~~~~~~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~----h~--~~V~~v~~---s~~g~~la~g~~-----  203 (458)
                      ..|..+.+|+.  +.++.+. ..++|..||...+....+ .+.+    ..  ..+..|.|   .|+++++++...     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            34677889986  5566666 489999999987765444 4432    11  13689999   688877776442     


Q ss_pred             --------CCeEEEEeCC---CceeeEEecCC------------CcccEEEEEeC--CCeEEEEeCC-CcEEEEEccCCC
Q 012679          204 --------NCQVQLWDST---ANRQLRTLRGG------------HRSRVGSLAWN--NHILTTGGMD-GLIINNDVRVRD  257 (458)
Q Consensus       204 --------dg~v~iwd~~---~~~~~~~~~~~------------~~~~v~~l~~~--~~~l~sg~~d-g~i~vwd~~~~~  257 (458)
                              +..|..||+.   +++.+......            -......++.+  |+..++++.. +.|...+.....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence                    5779999999   78776655420            11246777774  7888888888 888777776442


Q ss_pred             eeEEEEc----ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCC
Q 012679          258 HIVETYR----GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSM  298 (458)
Q Consensus       258 ~~~~~~~----~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~  298 (458)
                      .....+.    ......++|+++|+|+.|++...+|.|..+|+..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            2111111    1122367999999999998887799999999884

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.70  E-value=0.0035  Score=57.61  Aligned_cols=220  Identities=16%  Similarity=0.209  Sum_probs=112.9

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEeCCCceeeEE--ecCCCcccEEEEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC-----QVQLWDSTANRQLRT--LRGGHRSRVGSLA  233 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~--~~~~~~~~v~~l~  233 (458)
                      ..+.+||..+.+...+..+......-..+.+  ++..++.|+.++     .+.+||..+.+-...  +.. .........
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD-RRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-cccceEEEE
Confidence            4688999998887655444432222222322  677777777543     588999887653322  221 222334455


Q ss_pred             eCCCeEEEEeCCC-----cEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-------CcEEEEeCCCCC
Q 012679          234 WNNHILTTGGMDG-----LIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-------NLLHIWDRSMAS  300 (458)
Q Consensus       234 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-------g~i~iwd~~~~~  300 (458)
                      +++.+++.|+.++     .+.+||+.+..-.. ..+.........+.+  ++++++.|+.+       ..+.+||+.+..
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            6888888888664     47788887654211 111111111122222  66777777642       358889987654


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEE
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELL  375 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~  375 (458)
                      -..    +..+........++.+   +..+++.|+...   ...+.+||..+.+-...-.....  -..++.. ++ .|+
T Consensus       185 W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~i~  255 (302)
T 2xn4_A          185 WTY----IAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NG-LLY  255 (302)
T ss_dssp             EEE----ECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEE
T ss_pred             EEE----CCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CC-EEE
Confidence            311    1111111111112222   356777765111   24689999988764433222111  1112221 33 444


Q ss_pred             EEecCCC----CcEEEEeCCCce
Q 012679          376 SSHGFTQ----NQLTLWKYPSMV  394 (458)
Q Consensus       376 ~~~g~~d----~~i~iwd~~~~~  394 (458)
                      +..|...    ..+.+||..+.+
T Consensus       256 v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          256 VVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTE
T ss_pred             EECCcCCCcccccEEEEcCCCCe
Confidence            4434332    357888877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.66  E-value=0.0049  Score=56.74  Aligned_cols=220  Identities=13%  Similarity=0.174  Sum_probs=116.4

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC----CeEEEEeCCCceeeEE--ecCCCcccEEEEE
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN----CQVQLWDSTANRQLRT--LRGGHRSRVGSLA  233 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~  233 (458)
                      ...+.+||..++++..+..+......-..+.+  ++..++.|+.+    ..+.+||..+++-...  +.. .......+.
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~   99 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT-PRDSLAACA   99 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS-CCBSCEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc-cccceeEEE
Confidence            36899999999887666544433323333333  66777777754    5789999988754332  222 222234445


Q ss_pred             eCCCeEEEEeCC------CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEEC---------CCcEEEEeCC
Q 012679          234 WNNHILTTGGMD------GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGN---------DNLLHIWDRS  297 (458)
Q Consensus       234 ~~~~~l~sg~~d------g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~---------dg~i~iwd~~  297 (458)
                      .++.+++.|+.+      ..+.+||+.+..-.. ..+.........+.  -++++++.|+.         -..+.+||+.
T Consensus       100 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          100 AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCC
Confidence            578888888865      468899988764311 11111111111222  26677777763         3458899987


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCC---CeEEEEEcCCC
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGS---QVCALLWNKNE  371 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~---~v~~~~~s~~~  371 (458)
                      +..-..    +..+......- +++..  +..+++.|+...   -..+.+||..+.+-...-....   ....+.+  ++
T Consensus       178 ~~~W~~----~~~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  248 (306)
T 3ii7_A          178 TETWTE----LCPMIEARKNH-GLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS  248 (306)
T ss_dssp             TTEEEE----ECCCSSCCBSC-EEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT
T ss_pred             CCeEEE----CCCccchhhcc-eEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC
Confidence            764311    11111111111 22222  356777764111   1468899998875433222211   1222222  33


Q ss_pred             CeEEEEecCC----CCcEEEEeCCCce
Q 012679          372 RELLSSHGFT----QNQLTLWKYPSMV  394 (458)
Q Consensus       372 ~~l~~~~g~~----d~~i~iwd~~~~~  394 (458)
                       .|++..|..    .+.+.+||..+.+
T Consensus       249 -~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          249 -IVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             -EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             -EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence             444444532    2468888887643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=0.083  Score=51.81  Aligned_cols=245  Identities=9%  Similarity=0.085  Sum_probs=132.5

Q ss_pred             ceeeccC---CCeEEEEcC-CEEEEEECCCCCeeeEEEecC-CCCCEEEEEE-------cCCCCEEEEEecCC-------
Q 012679          145 NLLDWGS---SNVLAIALG-STVYLWDASDGTTSELVTVDD-ENGPVTSVNW-------APDGRHIAIGLNNC-------  205 (458)
Q Consensus       145 ~~~~~~~---~~~la~~~d-~~v~iwd~~~~~~~~~~~~~~-h~~~V~~v~~-------s~~g~~la~g~~dg-------  205 (458)
                      ..|.+++   ++|+++..+ +.|++.|.+++.+..+..... .......|+|       +++|++|+++...+       
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~  221 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP  221 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence            3456664   445555543 679999999888755544321 2235899999       99999777776554       


Q ss_pred             eEEEEeCCC-ceee-----EEecCCCcccEEEEEeC---CCeEEEEeCCCcEEEEEcc-------CCCe------e----
Q 012679          206 QVQLWDSTA-NRQL-----RTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVR-------VRDH------I----  259 (458)
Q Consensus       206 ~v~iwd~~~-~~~~-----~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~-------~~~~------~----  259 (458)
                      .|.+++... +...     ..+.. . .....++.+   +.++++-..++.|..+|+.       ++..      .    
T Consensus       222 ~V~~i~r~~~G~~~~~~~~~~v~~-~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          222 SVYIIKRNADGTFDDRSDIQLIAA-Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEECCTTSCCSTTSCEEEEEE-E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             eEEEEecCCCCceeecccceeecc-C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            266665433 1221     11211 1 122344553   4566667778889999987       3432      0    


Q ss_pred             EEE-E-cccccceEeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCC--CCcceeeeee--ccc---------cccee-EEE
Q 012679          260 VET-Y-RGHNQEVCGLKWSASGQQLASG-GNDNLLHIWDRSMASS--NSVTQWLHRL--EEH---------TSAVK-AIA  322 (458)
Q Consensus       260 ~~~-~-~~h~~~v~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~--~~~~~~~~~~--~~h---------~~~v~-~l~  322 (458)
                      ... + .+.......|+|+|+|++|..+ +..+.|+.++......  .......-..  .+.         -.... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            111 1 1223445789999999965444 5567888866543211  0000000000  000         01123 334


Q ss_pred             ecC------CCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-CC------------------------CCeEEEEEcCC-
Q 012679          323 WCP------FQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-TG------------------------SQVCALLWNKN-  370 (458)
Q Consensus       323 ~~p------~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-~~------------------------~~v~~~~~s~~-  370 (458)
                      ...      ....++++-.  ..+.|+.++ .+|.. .++. .+                        .....++++++ 
T Consensus       380 vd~~~~~~~~~g~lyVaD~--~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDR--LNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEG--GGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EccccccccCCCeEEEEEC--CCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            431      2345666654  678899998 45643 3332 10                        12567888886 


Q ss_pred             CCeEEEEecCCCCcEEEEeCCCceeeE
Q 012679          371 ERELLSSHGFTQNQLTLWKYPSMVKMA  397 (458)
Q Consensus       371 ~~~l~~~~g~~d~~i~iwd~~~~~~~~  397 (458)
                      +..+++  -..++.|+.+++.....++
T Consensus       456 g~lyVa--D~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          456 EMFYVH--DQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             TEEEEE--ETTTTEEEEEEECCCC---
T ss_pred             CEEEEE--eCCCCEEEEEECCCCcccc
Confidence            444444  3456778887776554444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.49  E-value=0.15  Score=55.76  Aligned_cols=263  Identities=11%  Similarity=0.062  Sum_probs=145.9

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----------------------------
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----------------------------  204 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----------------------------  204 (458)
                      -+++..++.++|..+++-......+++- ...+..++++|+.+.++++..+                             
T Consensus       708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          708 SLALANNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEEEECSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             cEEEEcCCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            3445556678888876544334444443 3568889999877766554321                             


Q ss_pred             --------------------CeEEEEeCCCceeeEEecCCCcccEEEEEe---C---CCeEEEEe----------CCCcE
Q 012679          205 --------------------CQVQLWDSTANRQLRTLRGGHRSRVGSLAW---N---NHILTTGG----------MDGLI  248 (458)
Q Consensus       205 --------------------g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~---~---~~~l~sg~----------~dg~i  248 (458)
                                          +.|++.|..+.+.+..+.-.....+.+++.   .   ..+|+.|+          ..|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                                246777877777776666445555666654   2   36888886          35789


Q ss_pred             EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .+|++...+.....-....+.|++++-- +| +|++|- .+.|++|++...+.      +..-..+-..|..+.....++
T Consensus       867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~------L~~~~~~~~~i~~~~l~~~~~  937 (1158)
T 3ei3_A          867 VVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKE------LRTECNHYNNIMALYLKTKGD  937 (1158)
T ss_dssp             EEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSC------EEEEEEECCCSCEEEEEEETT
T ss_pred             EEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCce------EEEEeeccccEEEEEEeccCC
Confidence            9999874321111112346678887643 45 444443 37899999876543      221001111122222222233


Q ss_pred             cEEEEeCCCCCCeEEE--EECCCCCeeEEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-------ee--
Q 012679          329 NLLATGGGGGDRCIKF--WNTHTGACLNSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-------VK--  395 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~l--wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-------~~--  395 (458)
                       +++.|.  .-..|.+  |+...++....-+.  ...++++.+-.++ .++.  +..+|.|.++.++..       +.  
T Consensus       938 -~I~vgD--~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~--aD~~gNl~vl~~~~~~~~~~~~~~L~ 1011 (1158)
T 3ei3_A          938 -FILVGD--LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLG--AENAFNLFVCQKDSAATTDEERQHLQ 1011 (1158)
T ss_dssp             -EEEEEE--SSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEE--EETTSEEEEEEECTTCCSTTGGGBEE
T ss_pred             -EEEEEE--hhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEE--EcCCCcEEEEecCCCCCCccccceee
Confidence             444443  3344444  45444433332222  3457777776554 4444  557889999877541       11  


Q ss_pred             -eEEEeCCCCcEEEEEE---cCC---------CCEEEEEeCCCcEEEEecC
Q 012679          396 -MAELSGHTSRVLFMAQ---SPD---------GCTVASAAADETLRFWNVF  433 (458)
Q Consensus       396 -~~~~~~h~~~V~~l~~---spd---------g~~l~s~s~Dg~i~iW~~~  433 (458)
                       ...+. ....|+++.-   .+.         ...++-++.+|.|-+.--.
T Consensus      1012 ~~~~fh-lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl 1061 (1158)
T 3ei3_A         1012 EVGLFH-LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061 (1158)
T ss_dssp             EEEEEE-CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE
T ss_pred             eEEEEe-CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc
Confidence             22222 1345777652   332         2357788899998876543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.46  E-value=0.0084  Score=55.27  Aligned_cols=220  Identities=13%  Similarity=0.151  Sum_probs=113.1

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----C-----CeEEEEeCCCceeeE--EecCCCcccE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----N-----CQVQLWDSTANRQLR--TLRGGHRSRV  229 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----d-----g~v~iwd~~~~~~~~--~~~~~~~~~v  229 (458)
                      ..+.+||..+.++..+..+......-..+.+  ++.+++.|+.    +     ..+.+||..+.+-..  .+.. .....
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~  115 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV-PRNRI  115 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS-CCBTC
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc-Ccccc
Confidence            4789999998887665444332222222222  6677777765    2     358899988765332  2222 22233


Q ss_pred             EEEEeCCCeEEEEeCC-----CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCC
Q 012679          230 GSLAWNNHILTTGGMD-----GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSM  298 (458)
Q Consensus       230 ~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~  298 (458)
                      ..+..++.+++.|+.+     ..+.+||+.+..-.. ..+.........+.+  ++++++.|+.+     +.+.+||+.+
T Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence            4455578888887754     357889987654211 111111111122222  67777777754     4588899876


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCe
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERE  373 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~  373 (458)
                      ..-..    +..+........++.+   +..+++.|+...   -..+.+||+.+.+-...-.....  -.+++.. ++ .
T Consensus       194 ~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~  264 (308)
T 1zgk_A          194 NEWRM----ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QG-R  264 (308)
T ss_dssp             TEEEE----CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-E
T ss_pred             CeEee----CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CC-E
Confidence            54311    1111111111122222   456777765211   25689999988764432222111  1122222 33 4


Q ss_pred             EEEEecCC----CCcEEEEeCCCce
Q 012679          374 LLSSHGFT----QNQLTLWKYPSMV  394 (458)
Q Consensus       374 l~~~~g~~----d~~i~iwd~~~~~  394 (458)
                      |++..|..    ...+.+||..+.+
T Consensus       265 i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          265 IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEcCcCCCcccceEEEEcCCCCE
Confidence            44443432    2457778876543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.44  E-value=0.0087  Score=54.91  Aligned_cols=228  Identities=15%  Similarity=0.186  Sum_probs=112.7

Q ss_pred             CCEEEEEecC----CeEEEEeCCCceeeEE--ecCCCcccEEEEEeCCCeEEEEeCCC-----cEEEEEccCCCeeE-EE
Q 012679          195 GRHIAIGLNN----CQVQLWDSTANRQLRT--LRGGHRSRVGSLAWNNHILTTGGMDG-----LIINNDVRVRDHIV-ET  262 (458)
Q Consensus       195 g~~la~g~~d----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~-~~  262 (458)
                      +.+++.|+.+    ..+.+||+.+.+-...  +.. .......+..++.+++.|+.++     .+.+||..+..-.. ..
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS-RRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc-ccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            3445555543    3578888877653322  221 1122233455778888887653     58889987664211 11


Q ss_pred             EcccccceEeEEEcCCCCEEEEEECCC-----cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGNDN-----LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      +.........+.+  ++++++.|+.++     .+.+||+.+..-..    +..+....... +++..  +..+++.|+..
T Consensus        95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~-~~~~~--~~~iyv~GG~~  165 (302)
T 2xn4_A           95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH----VAPMNTRRSSV-GVGVV--GGLLYAVGGYD  165 (302)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE----ECCCSSCCBSC-EEEEE--TTEEEEECCEE
T ss_pred             CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee----cCCCCCcccCc-eEEEE--CCEEEEEeCCC
Confidence            1111111122222  677778887653     57788877654311    11111111111 22222  35677766411


Q ss_pred             C-----CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCC----CCcEEEEeCCCceee--EEEeCCCC
Q 012679          338 G-----DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFT----QNQLTLWKYPSMVKM--AELSGHTS  404 (458)
Q Consensus       338 ~-----d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~----d~~i~iwd~~~~~~~--~~~~~h~~  404 (458)
                      .     -..+.+||..+.+-...-.....  -.+++.. ++ .|++..|..    .+.+.+||..+.+-.  ..+.....
T Consensus       166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  243 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR  243 (302)
T ss_dssp             TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence            1     24588999988764433222111  1122222 33 444444433    246889998775432  22211111


Q ss_pred             cEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCC
Q 012679          405 RVLFMAQSPDGCTVASAAADE-----TLRFWNVFGAP  436 (458)
Q Consensus       405 ~V~~l~~spdg~~l~s~s~Dg-----~i~iW~~~~~~  436 (458)
                      .-..+.+  ++++++.|+.++     .+.+||+....
T Consensus       244 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          244 NAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             cCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            1112222  677778887654     48888886553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.43  E-value=0.012  Score=54.43  Aligned_cols=184  Identities=11%  Similarity=0.067  Sum_probs=97.7

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----C-------CeEEEEeCCCceeeE--EecCCCc
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----N-------CQVQLWDSTANRQLR--TLRGGHR  226 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----d-------g~v~iwd~~~~~~~~--~~~~~~~  226 (458)
                      +..+.+||..++++.. ..+..............++..++.|+.    +       ..+.+||..+++-..  .+.. ..
T Consensus        12 G~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r   89 (315)
T 4asc_A           12 EEGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS-PR   89 (315)
T ss_dssp             TTEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS-CE
T ss_pred             CCceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc-ch
Confidence            3789999999988754 444322223333344557888888874    1       127888988765322  1211 11


Q ss_pred             ccEEEEEeCCCeEEEEeCC--------CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEEC-C-----CcE
Q 012679          227 SRVGSLAWNNHILTTGGMD--------GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGN-D-----NLL  291 (458)
Q Consensus       227 ~~v~~l~~~~~~l~sg~~d--------g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~-d-----g~i  291 (458)
                      .....+..++.+++.|+.+        ..+.+||+.+..-.. ..+.........+.  .++++++.|+. +     +.+
T Consensus        90 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  167 (315)
T 4asc_A           90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKM  167 (315)
T ss_dssp             ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCE
T ss_pred             hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceE
Confidence            2223344577888888743        458899987664211 11111111111222  36677777775 2     468


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC---CeEEEEECCCCCeeE
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD---RCIKFWNTHTGACLN  354 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~  354 (458)
                      .+||..+..-..    +..+........++.+   +..+++.|+...+   ..+.+||..+.+-..
T Consensus       168 ~~yd~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          168 CVYDPKKFEWKE----LAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEETTTTEEEE----CCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             EEEeCCCCeEEE----CCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            899987654311    1111111111112222   4567777652221   258889998875443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.42  E-value=0.085  Score=49.60  Aligned_cols=243  Identities=9%  Similarity=0.083  Sum_probs=128.3

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec------CCCcccEEEEEeCC-----CeEEEEe-C-------
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR------GGHRSRVGSLAWNN-----HILTTGG-M-------  244 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~------~~~~~~v~~l~~~~-----~~l~sg~-~-------  244 (458)
                      .....|+|.|+|++|+++...|.|++++.. +.....+.      .........|++++     ..|.... .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            347899999999845566678999999853 33211111      11234567888863     4444432 2       


Q ss_pred             CCcEEEEEccCCC----e---eEEEEc---ccccceEeEEEcCCCCEEEEEECC-------------CcEEEEeCCCCCC
Q 012679          245 DGLIINNDVRVRD----H---IVETYR---GHNQEVCGLKWSASGQQLASGGND-------------NLLHIWDRSMASS  301 (458)
Q Consensus       245 dg~i~vwd~~~~~----~---~~~~~~---~h~~~v~~l~~spd~~~l~sg~~d-------------g~i~iwd~~~~~~  301 (458)
                      ...|..+++....    .   ++..+.   ........|.|.|||.+.++.+..             |.|.-++....-.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            2356666664331    1   111111   111124679999999666654432             4566666553210


Q ss_pred             C-Cc-------ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC-----------------------
Q 012679          302 N-SV-------TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG-----------------------  350 (458)
Q Consensus       302 ~-~~-------~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~-----------------------  350 (458)
                      . ..       ...+.. .++ .....++|+|....|+++-.| .++.=.|.-+..+                       
T Consensus       177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0 00       000111 123 335789999965666665432 2211122222111                       


Q ss_pred             --------CeeEEEeCCCCeEEEEEcC-------CCCeEEEEecCCCCcEEEEeCCCceeeEE--E-eCCCCcEEEEEEc
Q 012679          351 --------ACLNSVDTGSQVCALLWNK-------NERELLSSHGFTQNQLTLWKYPSMVKMAE--L-SGHTSRVLFMAQS  412 (458)
Q Consensus       351 --------~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~g~~d~~i~iwd~~~~~~~~~--~-~~h~~~V~~l~~s  412 (458)
                              .++..+........+.|..       ++..+++  ....+.|...++..++.+..  + .....++..+++.
T Consensus       254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred             CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence                    1122233344567788864       3555555  44677888888776544332  2 2223579999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecC
Q 012679          413 PDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       413 pdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      |||.+.++.. +..=+||.+.
T Consensus       332 pdG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          332 PDGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             TTSCEEEEEC-STTEEEEEEE
T ss_pred             CCCcEEEEEe-CCCCEEEEEe
Confidence            9998666433 2233566653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.41  E-value=0.011  Score=54.42  Aligned_cols=226  Identities=11%  Similarity=0.099  Sum_probs=115.7

Q ss_pred             CEEEEEec--CCeEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeCC----CcEEEEEccCCCeeE-EEEccc
Q 012679          196 RHIAIGLN--NCQVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGMD----GLIINNDVRVRDHIV-ETYRGH  266 (458)
Q Consensus       196 ~~la~g~~--dg~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~d----g~i~vwd~~~~~~~~-~~~~~h  266 (458)
                      .+++.|+.  ...+.+||..+++-..  .+.. .......+..++.+++.|+.+    ..+.+||+.+..-.. ..+...
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE-KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSC-CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCc-ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            34555654  3478999988865332  2222 222334445678888888865    578889988765311 111111


Q ss_pred             ccceEeEEEcCCCCEEEEEECC------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC--
Q 012679          267 NQEVCGLKWSASGQQLASGGND------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG--  338 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~--  338 (458)
                      ......+.+  ++++++.|+.+      ..+.+||..+..-..    +..+........++.+   +..+++.|+...  
T Consensus        92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~  162 (306)
T 3ii7_A           92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT----KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNN  162 (306)
T ss_dssp             CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE----ECCCSSCCBSCEEEEE---TTEEEEECCEESCT
T ss_pred             ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe----CCCCcCCcceeEEEEE---CCEEEEECCCCCCC
Confidence            111122222  67777888765      468899987654311    1111111111112222   356666664111  


Q ss_pred             -----CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCCC----CcEEEEeCCCce--eeEEEeCCCCc
Q 012679          339 -----DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQ----NQLTLWKYPSMV--KMAELSGHTSR  405 (458)
Q Consensus       339 -----d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~d----~~i~iwd~~~~~--~~~~~~~h~~~  405 (458)
                           -..+.+||..+.+-...-.....  -.+++.. ++ .|++..|...    +.+.+||..+.+  .+..+......
T Consensus       163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  240 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT  240 (306)
T ss_dssp             TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred             CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence                 35588999988764433222211  1122222 34 3444434322    468899987754  23222211122


Q ss_pred             EEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 012679          406 VLFMAQSPDGCTVASAAAD-----ETLRFWNVFGA  435 (458)
Q Consensus       406 V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~~  435 (458)
                      ...+.+  ++.+++.|+.+     ..+.+||+...
T Consensus       241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            223333  67788888754     45778887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.39  E-value=0.027  Score=52.00  Aligned_cols=182  Identities=13%  Similarity=0.148  Sum_probs=95.2

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----CC-------eEEEEeCCCceeeEE--ecCCCcc
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----NC-------QVQLWDSTANRQLRT--LRGGHRS  227 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----dg-------~v~iwd~~~~~~~~~--~~~~~~~  227 (458)
                      ..+.+||..++++.. ..+..............++..++.|+.    ++       .+.+||..+.+-...  +.. ...
T Consensus        24 ~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~  101 (318)
T 2woz_A           24 TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS-ARC  101 (318)
T ss_dssp             SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS-CBC
T ss_pred             cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc-ccc
Confidence            468999999988755 333321222233334557888888873    12       277889877654322  221 122


Q ss_pred             cEEEEEeCCCeEEEEeCC-------CcEEEEEccCCCeeEEEEcccccce--EeEEEcCCCCEEEEEEC------CCcEE
Q 012679          228 RVGSLAWNNHILTTGGMD-------GLIINNDVRVRDHIVETYRGHNQEV--CGLKWSASGQQLASGGN------DNLLH  292 (458)
Q Consensus       228 ~v~~l~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~h~~~v--~~l~~spd~~~l~sg~~------dg~i~  292 (458)
                      .......++.+++.|+.+       ..+.+||+.+..-  ..+.....+.  .++.. .++++++.|+.      -+.+.
T Consensus       102 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~  178 (318)
T 2woz_A          102 LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVF  178 (318)
T ss_dssp             SCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEE
T ss_pred             ccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEE
Confidence            233445578888888764       2477888876542  2221111110  11122 36777777764      24588


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC---CeEEEEECCCCCeeE
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD---RCIKFWNTHTGACLN  354 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~  354 (458)
                      +||+.+..-..    +..+....... +++..  +..+++.||...+   ..+.+||..+.+-..
T Consensus       179 ~yd~~~~~W~~----~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          179 IYNPKKGDWKD----LAPMKTPRSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV  236 (318)
T ss_dssp             EEETTTTEEEE----ECCCSSCCBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred             EEcCCCCEEEE----CCCCCCCcccc-eEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence            99987754311    11111111111 22222  3567777642222   357789998876443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.37  E-value=0.11  Score=49.60  Aligned_cols=155  Identities=12%  Similarity=0.213  Sum_probs=106.5

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC----CCCEEEEEEcCCCCEEEEEe-------cCCeEEEEeC
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDE----NGPVTSVNWAPDGRHIAIGL-------NNCQVQLWDS  212 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----~~~V~~v~~s~~g~~la~g~-------~dg~v~iwd~  212 (458)
                      +.-+.|-..+.++.-.+..||-|+++... .+..-+..|    ...|..-..+++.++++..+       -.|.+++|..
T Consensus       108 VvfWkWis~~~l~lVT~taVyHWsi~~~s-~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~  186 (494)
T 1bpo_A          108 VTFWKWISLNTVALVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  186 (494)
T ss_dssp             CCEEEEEETTEEEEECSSEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred             ceEEEecCCCeEEEEcCCeeEEecccCCC-CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence            55688888999999999999999997522 223333332    45688888899999887643       2478999997


Q ss_pred             CCceeeEEecCCCcccEEEEEeCC-----CeEEEEeCC---CcEEEEEccCC---C-----eeEEEEc---ccccceEeE
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWNN-----HILTTGGMD---GLIINNDVRVR---D-----HIVETYR---GHNQEVCGL  273 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sg~~d---g~i~vwd~~~~---~-----~~~~~~~---~h~~~v~~l  273 (458)
                      +.+. -+.+.+ |.+....+..++     .+++.+.+.   +.+++-++...   .     ..+..+.   .-.+--.++
T Consensus       187 er~~-sQ~ieG-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvam  264 (494)
T 1bpo_A          187 DRKV-SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  264 (494)
T ss_dssp             TTCC-EEEECC-SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEE
T ss_pred             cccc-cchhee-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEE
Confidence            7543 344555 887777777754     345555443   78999998543   1     1111111   123344568


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          274 KWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      ..++.-..+..-+.-|.|++||+.++..
T Consensus       265 qvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          265 QISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             EecccCCEEEEEecCceEEEEeccccee
Confidence            8888888899999999999999999876

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.36  E-value=0.028  Score=52.76  Aligned_cols=165  Identities=10%  Similarity=0.071  Sum_probs=98.9

Q ss_pred             cCCeEEEEeCCCce-eeEE--ecCC----CcccEEEEEe----CCC-eEEEE-eC--CCcEEEEEccCCCe---eEEEEc
Q 012679          203 NNCQVQLWDSTANR-QLRT--LRGG----HRSRVGSLAW----NNH-ILTTG-GM--DGLIINNDVRVRDH---IVETYR  264 (458)
Q Consensus       203 ~dg~v~iwd~~~~~-~~~~--~~~~----~~~~v~~l~~----~~~-~l~sg-~~--dg~i~vwd~~~~~~---~~~~~~  264 (458)
                      .+|.|.++|..+.. ....  +.+.    ..-....+.+    ++. +|+.+ ..  +..|.+|++.....   .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68899999987321 1122  2221    2235566665    233 34443 33  46778887765432   223333


Q ss_pred             cc-ccceEeEEEcCCCCEEEEEEC-----------------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC
Q 012679          265 GH-NQEVCGLKWSASGQQLASGGN-----------------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF  326 (458)
Q Consensus       265 ~h-~~~v~~l~~spd~~~l~sg~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~  326 (458)
                      +. -...+.+.+.++|.+.++...                 .|.|..+|.  .+       +..+...-..-+.++|+|+
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-------~~~~~~~l~~pNGia~spD  231 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-------VRVVAEGFDFANGINISPD  231 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-------CEEEEEEESSEEEEEECTT
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-------EEEeecCCcccCcceECCC
Confidence            22 235788999999987777541                 245555554  22       2222223345688999999


Q ss_pred             CCcEEEEeCCCCCCeEEEEECCC-CCe--eEEEeCCCCeEEEEEcC-CCCeEEEEe
Q 012679          327 QSNLLATGGGGGDRCIKFWNTHT-GAC--LNSVDTGSQVCALLWNK-NERELLSSH  378 (458)
Q Consensus       327 ~~~ll~s~~g~~d~~i~lwd~~~-~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~  378 (458)
                      +..++++-+  ..+.|..|++.. +..  ...+......-.++..+ +|+..+++.
T Consensus       232 g~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          232 GKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            988888876  678999999863 432  23444556678899999 588777653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.36  E-value=0.099  Score=49.11  Aligned_cols=223  Identities=12%  Similarity=0.102  Sum_probs=118.9

Q ss_pred             ceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec---CCCCCEEEEEEcCC---CCEEEEEecC------CeEEEEe
Q 012679          145 NLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD---DENGPVTSVNWAPD---GRHIAIGLNN------CQVQLWD  211 (458)
Q Consensus       145 ~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~---~h~~~V~~v~~s~~---g~~la~g~~d------g~v~iwd  211 (458)
                      ..+.|.+ ++++++..++.|++++  +++...+..+.   ........|+|+|+   +..|.++...      +.|..|+
T Consensus        34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~  111 (352)
T 2ism_A           34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR  111 (352)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred             eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence            4566766 5677888889999998  45544343332   22456899999998   5666555432      5788888


Q ss_pred             CCCce-----e-eEEec--CCCcccEEEEEe--CCCeEEEEeC-------------CCcEEEEEccCC------------
Q 012679          212 STANR-----Q-LRTLR--GGHRSRVGSLAW--NNHILTTGGM-------------DGLIINNDVRVR------------  256 (458)
Q Consensus       212 ~~~~~-----~-~~~~~--~~~~~~v~~l~~--~~~~l~sg~~-------------dg~i~vwd~~~~------------  256 (458)
                      ...+.     . +..+.  .........|+|  ++.+.++.+.             .|.|.-++....            
T Consensus       112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~  191 (352)
T 2ism_A          112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRG  191 (352)
T ss_dssp             ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTT
T ss_pred             eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCC
Confidence            76431     1 12232  111122356777  4655555332             255666665430            


Q ss_pred             CeeEEEEcccccceEeEEEcC-CCCEEEEEECCCc--------EEEEeCCCCCC------------CCcceeeeeecccc
Q 012679          257 DHIVETYRGHNQEVCGLKWSA-SGQQLASGGNDNL--------LHIWDRSMASS------------NSVTQWLHRLEEHT  315 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg~--------i~iwd~~~~~~------------~~~~~~~~~~~~h~  315 (458)
                      ........++ .....++|+| ++.++++-...+.        |.+..  .+..            .....++..+..| 
T Consensus       192 ~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-  267 (352)
T 2ism_A          192 ARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFWPQG-  267 (352)
T ss_dssp             SCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred             CCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEecCCC-
Confidence            0000111233 2356899999 6665555433332        33332  2210            0001223333222 


Q ss_pred             cceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC-------eeEEEeCCCCeEEEEEcCCCCeEEEE
Q 012679          316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA-------CLNSVDTGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       316 ~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~  377 (458)
                      .....++|.  ...++++.-  ..+.|...++....       ....+.....+..+++.|+|..+++.
T Consensus       268 ~ap~G~~~~--~G~l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          268 FPPGNLAFF--RGDLYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CCEEEEEEE--TTEEEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             CCCcceEEE--CCEEEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            345667773  345666554  56778777766433       11122334678899999999777664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.33  E-value=0.027  Score=51.91  Aligned_cols=161  Identities=8%  Similarity=0.044  Sum_probs=105.4

Q ss_pred             ccccceEeEEEcCCCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeeecc----c--ccceeEEEe---cCCCCcEEEEe
Q 012679          265 GHNQEVCGLKWSASGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRLEE----H--TSAVKAIAW---CPFQSNLLATG  334 (458)
Q Consensus       265 ~h~~~v~~l~~spd~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~p~~~~ll~s~  334 (458)
                      .....-.++.|++....|..++ ..++|..||...+...    .+ .+..    .  ...+..|.|   .|+ ..|+++.
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~----~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~   83 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF----NV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVM   83 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE----EE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEE
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE----EE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEE
Confidence            3344456789988666666666 7899999998644321    01 2221    0  124578999   686 5555532


Q ss_pred             C-C----------CCCCeEEEEECC---CCCeeEEEeCC--------------CCeEEEEEcCCCCeEEEEecCCC-CcE
Q 012679          335 G-G----------GGDRCIKFWNTH---TGACLNSVDTG--------------SQVCALLWNKNERELLSSHGFTQ-NQL  385 (458)
Q Consensus       335 ~-g----------~~d~~i~lwd~~---~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~d-~~i  385 (458)
                      . +          +.++.|..+|+.   +++.+......              .....++..++|+..++.+  .. +.|
T Consensus        84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s--~~~~~I  161 (334)
T 2p9w_A           84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA--LGMPAI  161 (334)
T ss_dssp             EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE--ESSCEE
T ss_pred             cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC--CCCCeE
Confidence            1 0          126789999999   88888776532              2378999999999888733  34 666


Q ss_pred             EEEeCCCceeeEEEe-C-----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          386 TLWKYPSMVKMAELS-G-----HTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       386 ~iwd~~~~~~~~~~~-~-----h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      ..++.... .+..+. .     .....+.|+++|+|..|++...+|.|.-+|+..
T Consensus       162 ~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          162 ARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            66665433 222221 1     112367999999999998887799999999874

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.22  E-value=0.036  Score=52.70  Aligned_cols=142  Identities=8%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce------------
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDD--ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR------------  216 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~--h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~------------  216 (458)
                      .+.-+..+.++.|+.-++..+...+...++.  .-+.|..+..+|+|++||..+.. .|.|-.+..+.            
T Consensus        31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccccccc
Confidence            3566777888999999988555444555553  12358889999999999998665 78888876321            


Q ss_pred             eeEEecCC-----CcccEEEEEeC-----CCeEEEEeCCCcEEEEEccCCC-eeEEEEc---------ccccceEeEEEc
Q 012679          217 QLRTLRGG-----HRSRVGSLAWN-----NHILTTGGMDGLIINNDVRVRD-HIVETYR---------GHNQEVCGLKWS  276 (458)
Q Consensus       217 ~~~~~~~~-----~~~~v~~l~~~-----~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~---------~h~~~v~~l~~s  276 (458)
                      ..+.+..+     ...+|..+-|+     +..|++-..|+.|++||+.... .+. .+.         .....|.+++|.
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEc
Confidence            12233321     25779999996     4789999999999999998632 112 222         223678999999


Q ss_pred             CCCCEEEEEE--CCCcEEEE
Q 012679          277 ASGQQLASGG--NDNLLHIW  294 (458)
Q Consensus       277 pd~~~l~sg~--~dg~i~iw  294 (458)
                      .++-.|...+  .+|.|+-.
T Consensus       189 ~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEecCCCCCEEEE
Confidence            9888777755  77888654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.06  E-value=0.4  Score=50.06  Aligned_cols=266  Identities=12%  Similarity=0.083  Sum_probs=147.7

Q ss_pred             ccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEe
Q 012679          143 YLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTL  221 (458)
Q Consensus       143 ~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~  221 (458)
                      .+.++.-.. +.+..++ ++-+..||..+.+...  ........|.++.. .+| .|.+|+.+ -|..+|..+++.....
T Consensus        64 ~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~  137 (758)
T 3ott_A           64 RIYCGVIIDNTYLYMGT-DNGILVYNYRADRYEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFD  137 (758)
T ss_dssp             CEEEEEEETTTEEEEEE-TTEEEEEETTTTEECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred             eEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence            344444444 4455555 4568999988765432  11112345777764 344 57777776 5888998766543221


Q ss_pred             c---CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcc----cccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          222 R---GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRG----HNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       222 ~---~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      .   ......|.++..+ ...|..|+..| |..++..+..........    ....|.++....++..|..|+. +-+..
T Consensus       138 ~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~  215 (758)
T 3ott_A          138 TRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQ  215 (758)
T ss_dssp             HHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEE
T ss_pred             cCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeE
Confidence            1   1123568888875 45566666654 777887654321111111    1224788888777776666664 45888


Q ss_pred             EeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------CCCCeEEE
Q 012679          294 WDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCAL  365 (458)
Q Consensus       294 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------~~~~v~~~  365 (458)
                      +|..+....    ....+  ....|.++....++...+.+    . +-+.+++..++.......        ....|.++
T Consensus       216 ~~~~~~~~~----~~~~l--~~~~i~~i~~d~~g~lWigT----~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i  284 (758)
T 3ott_A          216 YFPSTGQIK----QTEAF--HNNSIKSLALDGNGDLLAGT----D-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNI  284 (758)
T ss_dssp             EETTTTEEE----EEEEE--EEEEEEEEEECTTCCEEEEE----T-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEE
T ss_pred             EcCCCCeEE----eccCC--CCCeEEEEEEcCCCCEEEEe----C-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEE
Confidence            887654321    11111  23458888887765544443    3 357888887765432211        12348888


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-----CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-----GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ....++...+.+   ..| +.++.....-......     .....|.++....+|.+.+ |+.+| +..++..
T Consensus       285 ~~D~~g~lWiGT---~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~  351 (758)
T 3ott_A          285 FADQEHNIWLGT---DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDP  351 (758)
T ss_dssp             EECTTCCEEEEE---SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCT
T ss_pred             EEcCCCCEEEEe---CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeeccc
Confidence            888888776653   345 5554432211111110     1234688998888887665 45555 5555543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.04  E-value=0.047  Score=50.29  Aligned_cols=211  Identities=11%  Similarity=0.083  Sum_probs=100.9

Q ss_pred             EEEEEecCCeEEEEeCCCceeeE-EecCC-CcccEEEEEeCCCeEEEEeC----C-------CcEEEEEccCCCeeEEEE
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLR-TLRGG-HRSRVGSLAWNNHILTTGGM----D-------GLIINNDVRVRDHIVETY  263 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~-~~~~~-~~~~v~~l~~~~~~l~sg~~----d-------g~i~vwd~~~~~~~~~~~  263 (458)
                      +++.|+  ..+.+||..+++-.. .+... .......+..++.+++.|+.    +       ..+.+||..+..-  ..+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence            344555  479999998887433 22110 11222233347788888884    1       1277888876542  222


Q ss_pred             cccc---cceEeEEEcCCCCEEEEEECC--------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          264 RGHN---QEVCGLKWSASGQQLASGGND--------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       264 ~~h~---~~v~~l~~spd~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      ..-.   .....+.+  ++.+++.|+.+        +.+.+||..+..-..    +..+....... +++..  +..+++
T Consensus        83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~-~~~~~--~~~iyv  153 (315)
T 4asc_A           83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE----SDPLPYVVYGH-TVLSH--MDLVYV  153 (315)
T ss_dssp             CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE----CCCCSSCCBSC-EEEEE--TTEEEE
T ss_pred             CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE----CCCCCCcccce-eEEEE--CCEEEE
Confidence            1111   11111222  66677777732        458889987654311    11111111111 12222  356777


Q ss_pred             EeCCCC----CCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCCCC----cEEEEeCCCceeeE--EEe
Q 012679          333 TGGGGG----DRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQN----QLTLWKYPSMVKMA--ELS  400 (458)
Q Consensus       333 s~~g~~----d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~d~----~i~iwd~~~~~~~~--~~~  400 (458)
                      .||...    -..+.+||..+.+-...-....+  -.+++.. ++ .|++..|..+.    .+.+||..+.+-..  .+.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  231 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP  231 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCC
Confidence            765211    24689999988754332222211  1122222 33 44444454332    57888887754322  221


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      ........+.+  ++++++.|+.+
T Consensus       232 ~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          232 QERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             SCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CcccceeEEEE--CCEEEEECCcc
Confidence            11111122223  66777878764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.03  E-value=0.42  Score=49.88  Aligned_cols=228  Identities=14%  Similarity=0.076  Sum_probs=132.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVE  261 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~  261 (458)
                      ...|.+|.-..+|. |-.|+.+| +..||-...+............|.++.-+ ...|..|+.+| +..||..+... ..
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f-~~   96 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY-EQ   96 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE-CC
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE-EC
Confidence            46799998888875 66788887 66677433221111111134568887764 56788888765 78899876432 11


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeec-----ccccceeEEEecCCCCcEEEEeCC
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE-----EHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                      ........|.++.. .++ .|..|+.+ -|..+|..+...       ..+.     .....|.++....++...+.+   
T Consensus        97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-------~~~~~~~~~l~~~~i~~i~~d~~g~lWigt---  163 (758)
T 3ott_A           97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-------TSFDTRRNGLPNNTIYSIIRTKDNQIYVGT---  163 (758)
T ss_dssp             CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-------EEECHHHHCCSCSCEEEEEECTTCCEEEEE---
T ss_pred             cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-------EEeccCCCCcCCCeEEEEEEcCCCCEEEEe---
Confidence            11112234666654 344 56666665 688888765432       2221     123457888877754444432   


Q ss_pred             CCCCeEEEEECCCCCeeEEEeC-------CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679          337 GGDRCIKFWNTHTGACLNSVDT-------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM  409 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l  409 (458)
                       . +-|..+|..+++... +..       ...|.++...+++..|.+++   ++-+..++..+.+......-....|.++
T Consensus       164 -~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt---~~Gl~~~~~~~~~~~~~~~l~~~~i~~i  237 (758)
T 3ott_A          164 -Y-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGT---EGYLFQYFPSTGQIKQTEAFHNNSIKSL  237 (758)
T ss_dssp             -T-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEE---EEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred             -C-CCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEE---CCCCeEEcCCCCeEEeccCCCCCeEEEE
Confidence             3 357788887765332 211       12378888888777655532   2458888877654322111123458889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          410 AQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       410 ~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ....+|.+.+ |+.+ -|.+++....
T Consensus       238 ~~d~~g~lWi-gT~~-Gl~~~~~~~~  261 (758)
T 3ott_A          238 ALDGNGDLLA-GTDN-GLYVYHNDTT  261 (758)
T ss_dssp             EECTTCCEEE-EETT-EEEEECCTTS
T ss_pred             EEcCCCCEEE-EeCC-ceeEEecCCC
Confidence            9888887666 4444 4777776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.02  E-value=0.045  Score=51.34  Aligned_cols=160  Identities=13%  Similarity=0.099  Sum_probs=94.4

Q ss_pred             ceEeEEEcCCCCEEEEEE------------CCCcEEEEeCCCCCCCCcceeeeeecc-----cccceeEEEecC--CCC-
Q 012679          269 EVCGLKWSASGQQLASGG------------NDNLLHIWDRSMASSNSVTQWLHRLEE-----HTSAVKAIAWCP--FQS-  328 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p--~~~-  328 (458)
                      ..-.+...|+|..+++++            .+|.|.++|........  +.+ .+.+     .......+.+.+  ++. 
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~--~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV--SEL-EIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE--EEC-EEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce--EEE-EccCCCCCcCceeeeeeEEEECCCCcE
Confidence            344566778776555542            68999999987543211  111 1211     223455666654  233 


Q ss_pred             cEEEEeCCCCCCeEEEEECCCCC-e---eEEEeC--CCCeEEEEEcCCCCeEEEEec-C--------------CCCcEEE
Q 012679          329 NLLATGGGGGDRCIKFWNTHTGA-C---LNSVDT--GSQVCALLWNKNERELLSSHG-F--------------TQNQLTL  387 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~~-~---~~~~~~--~~~v~~~~~s~~~~~l~~~~g-~--------------~d~~i~i  387 (458)
                      +++++..+..+..|.+|++..+. .   +..+..  -...+.+.+.++|.+.++... +              ..|.|.-
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            57777654446788888876542 2   223332  235789999999987776421 1              1244555


Q ss_pred             EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 012679          388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNVFG  434 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~~~  434 (458)
                      ++..  + +..+...-...+.++||||+++|..+. ..+.|..|++..
T Consensus       208 ~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          208 YSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             ECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            5543  2 222222234568999999998776665 578899999864

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.99  E-value=0.083  Score=49.50  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             CCEEEEEECCC--CCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEec-C---------CeEEEEeCCCceeeEE--ecCC
Q 012679          160 GSTVYLWDASD--GTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLN-N---------CQVQLWDSTANRQLRT--LRGG  224 (458)
Q Consensus       160 d~~v~iwd~~~--~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~-d---------g~v~iwd~~~~~~~~~--~~~~  224 (458)
                      .+.+++||..+  .++..+..+. .....-.++.+  ++++++.|+. +         ..+.+||+.+.+-...  +...
T Consensus        30 ~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~  107 (357)
T 2uvk_A           30 GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM  107 (357)
T ss_dssp             TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS
T ss_pred             CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc
Confidence            45799999874  6665555444 22222223333  5677777765 2         3689999987653322  2201


Q ss_pred             CcccEEEEEeCCCeEEEEeCC
Q 012679          225 HRSRVGSLAWNNHILTTGGMD  245 (458)
Q Consensus       225 ~~~~v~~l~~~~~~l~sg~~d  245 (458)
                      ......++..++.+++.|+.+
T Consensus       108 ~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A          108 GMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             CCSSEEEEEETTEEEEEECCC
T ss_pred             ccccceEEEECCEEEEEeCcC
Confidence            222334455788888999865

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.91  E-value=0.27  Score=45.82  Aligned_cols=237  Identities=13%  Similarity=0.112  Sum_probs=125.8

Q ss_pred             ecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEec---CCCcccEEEEEeCC-----CeEEEE---eCC
Q 012679          179 VDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLR---GGHRSRVGSLAWNN-----HILTTG---GMD  245 (458)
Q Consensus       179 ~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~---~~~~~~v~~l~~~~-----~~l~sg---~~d  245 (458)
                      +...-.....|+|.|||.++++--..|.|++++...++.  +..+.   .........|++++     ..|...   ..+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            333345689999999999766655489999998765543  22221   11345678899964     334432   244


Q ss_pred             CcEEEEEccCC----------CeeEEEEc-ccccceEeEEEcCCCCEEEEEEC-------------CCcEEEEeCCCCCC
Q 012679          246 GLIINNDVRVR----------DHIVETYR-GHNQEVCGLKWSASGQQLASGGN-------------DNLLHIWDRSMASS  301 (458)
Q Consensus       246 g~i~vwd~~~~----------~~~~~~~~-~h~~~v~~l~~spd~~~l~sg~~-------------dg~i~iwd~~~~~~  301 (458)
                      +.|.-|.+...          +.++..+. ........|.|.|||.+.++.+.             .|.|.-.+....-.
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            56666665541          11222232 11223467999999988777553             24454445432200


Q ss_pred             C-Cc--ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC------------------eeEEEeCC-
Q 012679          302 N-SV--TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------------------CLNSVDTG-  359 (458)
Q Consensus       302 ~-~~--~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~------------------~~~~~~~~-  359 (458)
                      . ..  ...+. -.+|. ....++|+|+ ..|+++-.| .|+.=.|--+..|.                  ++..+... 
T Consensus       187 ~~nPf~~~~i~-a~G~R-Np~Gla~dp~-G~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~  262 (347)
T 3das_A          187 PGNPFPGSPVY-SYGHR-NVQGLAWDDK-QRLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE  262 (347)
T ss_dssp             TTCSSTTCCEE-EBCCS-BCCEEEECTT-CCEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred             CCCCCCCCeEE-eeCCC-CcceEEECCC-CCEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence            0 00  00011 12343 3468999996 556665432 33322222222221                  12222222 


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee----eEEEeCCCCcEEEEEEcCCCCEEEEEe
Q 012679          360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK----MAELSGHTSRVLFMAQSPDGCTVASAA  422 (458)
Q Consensus       360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~s  422 (458)
                      .....++|.. +..++.  ....+.|....+.....    ..-+.+...++..|+..|||.++++..
T Consensus       263 ~ap~G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          263 ASPSGIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CCEEEEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCcceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            2456677763 444443  34556666666654432    222344457899999999998776654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.87  E-value=0.08  Score=48.53  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=97.6

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEeCCCceeeEE--ecCCCcccEEEEE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN-----CQVQLWDSTANRQLRT--LRGGHRSRVGSLA  233 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d-----g~v~iwd~~~~~~~~~--~~~~~~~~v~~l~  233 (458)
                      +.+.+||..+.++..+..+......-..+.+  +++.++.|+.+     ..+.+||..+.+-...  +.. ......++.
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~  166 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAV  166 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-cccceEEEE
Confidence            4689999998887665544432223333333  67777777643     3688999887653322  221 222234445


Q ss_pred             eCCCeEEEEeCC-----CcEEEEEccCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCCCCC
Q 012679          234 WNNHILTTGGMD-----GLIINNDVRVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMASSN  302 (458)
Q Consensus       234 ~~~~~l~sg~~d-----g~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~~~~  302 (458)
                      +++.+++.|+.+     ..+.+||+.+..-.. ..+.........+.+  ++++++.|+.+     ..+.+||+.+..-.
T Consensus       167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            578888888765     458899987654211 111111111222222  67777877764     56899998775431


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCC---CCCeEEEEECCCCCee
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG---GDRCIKFWNTHTGACL  353 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~---~d~~i~lwd~~~~~~~  353 (458)
                      .    +..+.........+.+   +..+++.|+..   .-..+.+||..+.+-.
T Consensus       245 ~----~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          245 F----VAPMKHRRSALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             E----CCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             E----CCCCCCCccceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            1    1111111111112222   35677766411   1245778888776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.81  E-value=0.024  Score=53.33  Aligned_cols=238  Identities=11%  Similarity=0.031  Sum_probs=110.6

Q ss_pred             CCCEEEEEecC-CeEEEEeCCC--ce--eeEEecCCCcccEEEEEeCCCeEEEEeC-C---------CcEEEEEccCCCe
Q 012679          194 DGRHIAIGLNN-CQVQLWDSTA--NR--QLRTLRGGHRSRVGSLAWNNHILTTGGM-D---------GLIINNDVRVRDH  258 (458)
Q Consensus       194 ~g~~la~g~~d-g~v~iwd~~~--~~--~~~~~~~~~~~~v~~l~~~~~~l~sg~~-d---------g~i~vwd~~~~~~  258 (458)
                      ++.+++.|+.+ ..+.+||..+  .+  .+..+.........++..++.+++.|+. +         ..+.+||+.+..-
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            45555555432 3678888764  22  2222220022233445557888888876 2         4688999887642


Q ss_pred             eE-EEEc-ccccceEeEEEcCCCCEEEEEECC---------------------------------------CcEEEEeCC
Q 012679          259 IV-ETYR-GHNQEVCGLKWSASGQQLASGGND---------------------------------------NLLHIWDRS  297 (458)
Q Consensus       259 ~~-~~~~-~h~~~v~~l~~spd~~~l~sg~~d---------------------------------------g~i~iwd~~  297 (458)
                      .. ..+. .......++.  .++++++.|+.+                                       +.+.+||..
T Consensus        99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            11 1111 1111111222  477788888865                                       578899987


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC----CCCeEEEEEC--CCCCeeEEEeC--CCC-eEEEEEc
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG----GDRCIKFWNT--HTGACLNSVDT--GSQ-VCALLWN  368 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~----~d~~i~lwd~--~~~~~~~~~~~--~~~-v~~~~~s  368 (458)
                      +..-..    +..+......-.+++..  +..+++.|+..    ....+.+||+  .+.+-...-..  ... ....+..
T Consensus       177 ~~~W~~----~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~  250 (357)
T 2uvk_A          177 TQQWSY----AGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI  250 (357)
T ss_dssp             TTEEEE----EEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred             CCcEEE----CCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence            754311    11111101110122222  45677666411    1345777876  44432221111  111 1111222


Q ss_pred             CCCCeEEEEecCCC---------------------CcEEEEeCCCc--eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          369 KNERELLSSHGFTQ---------------------NQLTLWKYPSM--VKMAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       369 ~~~~~l~~~~g~~d---------------------~~i~iwd~~~~--~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      .+++ |++..|...                     ..+.+||..+.  +.+..+......-.++  .-++++++.||.++
T Consensus       251 ~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~  327 (357)
T 2uvk_A          251 SNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETA  327 (357)
T ss_dssp             ETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECG
T ss_pred             ECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCC
Confidence            2344 444434211                     25778888754  4444443222222222  23778888888653


Q ss_pred             ------cEEEEecCCCCcccccC
Q 012679          426 ------TLRFWNVFGAPQVISKS  442 (458)
Q Consensus       426 ------~i~iW~~~~~~~~~~~~  442 (458)
                            .|.+.++.+++......
T Consensus       328 ~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          328 GGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             GGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             CCCEeeeEEEEEEcCcEeEeeec
Confidence                  35555777766655444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.027  Score=52.42  Aligned_cols=200  Identities=11%  Similarity=0.044  Sum_probs=107.9

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCC-CCCEEEEEE--cC-CCCEEEEE-ecCCeEEEEeCCCceeeEEecCC--
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDE-NGPVTSVNW--AP-DGRHIAIG-LNNCQVQLWDSTANRQLRTLRGG--  224 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h-~~~V~~v~~--s~-~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~--  224 (458)
                      +.+++++.||.|+-.|..+|+.  +.+++.. ..++....-  .+ ++..++.. +.||.|..++..+|.....+...  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~--~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI--IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE--EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE--EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            5688889999999999999987  5555432 122222110  01 23333333 68999999999888655444321  


Q ss_pred             -CcccEEE---EEe-------CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc------eEeEEEc-----CCCCEE
Q 012679          225 -HRSRVGS---LAW-------NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE------VCGLKWS-----ASGQQL  282 (458)
Q Consensus       225 -~~~~v~~---l~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~------v~~l~~s-----pd~~~l  282 (458)
                       ...++..   ...       .+..+++|+.+|.+...|+++++.+...-.+....      ..|....     ..+..+
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v  168 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI  168 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence             1122221   001       46788999999999999999988643322221110      0011110     124567


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcceeeeeec---cccc--cee-EEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-E
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVTQWLHRLE---EHTS--AVK-AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-S  355 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~--~v~-~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-~  355 (458)
                      +.|..+..+.+.+ +++.     .+...+.   ....  .+. .-..+.++.. +++ +  .||.|.-+|..+|..+. .
T Consensus       169 ~ig~~~y~v~~~~-~sG~-----~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~-~--~dg~v~A~d~~~G~~~W~~  238 (339)
T 2be1_A          169 VIGKTIFELGIHS-YDGA-----SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAP-F--RDKSLLASDLDFRIARWVS  238 (339)
T ss_dssp             EEEEEEEECEECC-TTSC-----CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEE-E--TTTEEEEECSTTCCEEEEC
T ss_pred             EEecceEEEEEEC-CCCC-----eEEEecccccccccccccccccccccCCcE-EEE-C--CCCEEEEEECCCCcEEEEe
Confidence            7777777777766 3332     1111111   1100  000 0001123344 333 2  79999999999999876 5


Q ss_pred             EeCCCCeE
Q 012679          356 VDTGSQVC  363 (458)
Q Consensus       356 ~~~~~~v~  363 (458)
                      .+..+++.
T Consensus       239 ~~l~sPv~  246 (339)
T 2be1_A          239 PTFPGIIV  246 (339)
T ss_dssp             CCCSSCEE
T ss_pred             ecCCCCeE
Confidence            55555543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.74  E-value=0.073  Score=55.09  Aligned_cols=190  Identities=13%  Similarity=0.100  Sum_probs=103.2

Q ss_pred             CEEEEEECCCCCeeeEE-E-----ecCCCCCEEEEEEcCCCCEEEEEecCC------eEEEEeCCCceeeE--EecCCCc
Q 012679          161 STVYLWDASDGTTSELV-T-----VDDENGPVTSVNWAPDGRHIAIGLNNC------QVQLWDSTANRQLR--TLRGGHR  226 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~-~-----~~~h~~~V~~v~~s~~g~~la~g~~dg------~v~iwd~~~~~~~~--~~~~~~~  226 (458)
                      +.+.+||..++++..+. .     +......-.++.+..+++.++.|+.++      .+.+||..+.+-..  .+.. ..
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R  490 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TR  490 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-Cc
Confidence            46999999999886665 3     222122223333433777888887543      58899988754322  2222 22


Q ss_pred             ccEEEEEe-CCCeEEEEeCCC--cEEEEEccCCCeeEEE----EcccccceEeEEEcCC-CCEEEEEEC--C-----CcE
Q 012679          227 SRVGSLAW-NNHILTTGGMDG--LIINNDVRVRDHIVET----YRGHNQEVCGLKWSAS-GQQLASGGN--D-----NLL  291 (458)
Q Consensus       227 ~~v~~l~~-~~~~l~sg~~dg--~i~vwd~~~~~~~~~~----~~~h~~~v~~l~~spd-~~~l~sg~~--d-----g~i  291 (458)
                      ....++.+ ++.+++.|+.++  .+.+||+.+.......    .........++.+..+ +++++.||.  +     +.+
T Consensus       491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v  570 (695)
T 2zwa_A          491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA  570 (695)
T ss_dssp             BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEE
T ss_pred             ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcE
Confidence            23344454 788888888765  6899999876532111    1111122233555555 667777775  2     458


Q ss_pred             EEEeCCCCCCCCccee--eeeec-ccccceeEEEecCCCCcEEEEeCCC------CCCeEEEEECCCCCee
Q 012679          292 HIWDRSMASSNSVTQW--LHRLE-EHTSAVKAIAWCPFQSNLLATGGGG------GDRCIKFWNTHTGACL  353 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~--~~~~~-~h~~~v~~l~~~p~~~~ll~s~~g~------~d~~i~lwd~~~~~~~  353 (458)
                      .+||+.+........+  +.... .......++.+ . ...+++.||.+      ....+.+||..+.+..
T Consensus       571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          571 IIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-T-PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-E-TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEEccCCccccceEEEEcCCCCCCCcccceEEEe-C-CCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            8999887762000011  11110 00111122222 2 15677766522      2356999999887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.72  E-value=0.32  Score=44.46  Aligned_cols=212  Identities=6%  Similarity=-0.044  Sum_probs=113.5

Q ss_pred             CCCCEEEEEe--cCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCC--------------CcEEEEEccCC
Q 012679          193 PDGRHIAIGL--NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMD--------------GLIINNDVRVR  256 (458)
Q Consensus       193 ~~g~~la~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d--------------g~i~vwd~~~~  256 (458)
                      .+|.+|+...  .++.|...+..... ...+..   ..+..+..++..|+-....              ..|+..++...
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~   98 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH   98 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence            3555555543  23455555543332 333321   1244555566665555432              35666676655


Q ss_pred             CeeEEEEcccccceEeEEEcCCCCEEEEEE--C--CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          257 DHIVETYRGHNQEVCGLKWSASGQQLASGG--N--DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       257 ~~~~~~~~~h~~~v~~l~~spd~~~l~sg~--~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      +.  ..+...  .  +..|+++++.|+-..  .  +..|+..++....       ...+..+..    .++++++..++.
T Consensus        99 ~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-------~~~lt~~~~----~~~~~~g~~iy~  161 (302)
T 3s25_A           99 GS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-------KKKIKNHYL----FTCNTSDRYFYY  161 (302)
T ss_dssp             CC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-------CEEEESSCC----CCSEEETTEEEE
T ss_pred             cc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-------eEEEeCCCc----eEeeEECCEEEE
Confidence            42  222221  1  236778899988776  2  3455555655332       233433332    456777888888


Q ss_pred             EeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEc
Q 012679          333 TGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS  412 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  412 (458)
                      +..  ....|..-++..+.....+.  .... ..+.|++..|+-+.......|..-++..... ..+.  ...+  ..|+
T Consensus       162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~  231 (302)
T 3s25_A          162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYN  231 (302)
T ss_dssp             ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEE
T ss_pred             EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEE
Confidence            764  56789999987665443333  2222 3456999998876543334676666665442 2332  1223  2367


Q ss_pred             CCCCEEEEEeC--CCcEEEEecCCC
Q 012679          413 PDGCTVASAAA--DETLRFWNVFGA  435 (458)
Q Consensus       413 pdg~~l~s~s~--Dg~i~iW~~~~~  435 (458)
                      |++..|.-++.  .+.|..-++.+.
T Consensus       232 ~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          232 VYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EETTEEEEEECSSSCEEEEEETTSC
T ss_pred             ECCCEEEEEECCCCcEEEEEECCCC
Confidence            77777765532  344555555443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.68  E-value=0.099  Score=48.12  Aligned_cols=224  Identities=11%  Similarity=0.129  Sum_probs=105.4

Q ss_pred             EEEEEecCCeEEEEeCCCceeeE-EecCC-CcccEEEEEeCCCeEEEEeC----CC-------cEEEEEccCCCeeE-EE
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLR-TLRGG-HRSRVGSLAWNNHILTTGGM----DG-------LIINNDVRVRDHIV-ET  262 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~-~~~~~-~~~~v~~l~~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~-~~  262 (458)
                      .++.|+.  .+..||..+++-.. .+... .......+..++.+++.|+.    ++       .+.+||..+..-.. ..
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  48899998877443 12110 11222333346788888883    12       17788887654211 11


Q ss_pred             EcccccceEeEEEcCCCCEEEEEECC-------CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGND-------NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      +.........+.+  ++++++.|+.+       ..+.+||..+..-..    +..+......- +++.  .+..+++.|+
T Consensus        96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~----~~~~p~~r~~~-~~~~--~~~~iyv~GG  166 (318)
T 2woz_A           96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE----VKNLPIKVYGH-NVIS--HNGMIYCLGG  166 (318)
T ss_dssp             BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE----ECCCSSCEESC-EEEE--ETTEEEEECC
T ss_pred             CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE----CCCCCCccccc-EEEE--ECCEEEEEcC
Confidence            1111111122222  67777888754       357888887654311    11111100111 1222  2456766664


Q ss_pred             CC----CCCeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCCC----CcEEEEeCCCce--eeEEEeCCC
Q 012679          336 GG----GDRCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFTQ----NQLTLWKYPSMV--KMAELSGHT  403 (458)
Q Consensus       336 g~----~d~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~d----~~i~iwd~~~~~--~~~~~~~h~  403 (458)
                      ..    .-..+.+||..+.+-...-.....  -.+++.. ++ .|++..|..+    +.+.+||..+.+  .+..+....
T Consensus       167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  244 (318)
T 2woz_A          167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER  244 (318)
T ss_dssp             EESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC
T ss_pred             CCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence            11    124589999988764433222211  1122222 33 4444444332    357788887643  232222111


Q ss_pred             CcEEEEEEcCCCCEEEEEeCC--------------CcEEEEecCCC
Q 012679          404 SRVLFMAQSPDGCTVASAAAD--------------ETLRFWNVFGA  435 (458)
Q Consensus       404 ~~V~~l~~spdg~~l~s~s~D--------------g~i~iW~~~~~  435 (458)
                      .....+.+  ++++++.|+.+              ..+.+||+.+.
T Consensus       245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          245 SSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             BSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             cceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            11122222  56777777754              34667777553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.64  E-value=0.05  Score=51.75  Aligned_cols=107  Identities=12%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             EecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce--
Q 012679          322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV--  394 (458)
Q Consensus       322 ~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~--  394 (458)
                      ..+.++..+++.    .++.||.-++..+...+.+...     ..+..+..+|+|.+|+..   .+..|.|..++.+.  
T Consensus        27 ~~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~---g~~~V~Vv~LP~~~~~   99 (452)
T 3pbp_A           27 FSSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF---NDNEIFVMEVPWGYSN   99 (452)
T ss_dssp             EEETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE---CSSEEEEEECCTTCSC
T ss_pred             EEEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe---cCCeEEEEEecCcccc
Confidence            334455666655    5789999898865556666554     268899999999999987   36789999988321  


Q ss_pred             ----------eeEEEeC------CCCcEEEEEEcC---CCCEEEEEeCCCcEEEEecCCC
Q 012679          395 ----------KMAELSG------HTSRVLFMAQSP---DGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       395 ----------~~~~~~~------h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                                ....+.-      ...+|..+.|+|   .+..|++-..|+.|++||+...
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                      1112221      246799999999   4678999999999999999873

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.49  E-value=0.75  Score=45.32  Aligned_cols=288  Identities=12%  Similarity=0.119  Sum_probs=166.7

Q ss_pred             ceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecC-------------------------CCC
Q 012679          130 ERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDD-------------------------ENG  184 (458)
Q Consensus       130 ~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------h~~  184 (458)
                      .++--+|+-.++||.         +.++|..|.|+|+-+.+++.  +..+.-                         ..+
T Consensus        58 ~k~~v~pG~~Deyy~---------f~SgG~sG~v~v~G~PSmR~--l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~g  126 (638)
T 3sbq_A           58 QKIHVGPGELDDYYG---------FWSGGHQGEVRVLGVPSMRE--LMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNG  126 (638)
T ss_dssp             CCCCCCTTCCCSEEE---------EEECGGGCCEEEEEETTTEE--EEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCC
T ss_pred             cccccCCCCcccEEE---------EeecCcCceEEEEecCCcce--EEEeecccCCCCcccCCchhHHHHHhcCCCccCC
Confidence            455566777777764         56677778888888877654  222210                         011


Q ss_pred             CEE--EEEEcC---CCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeC-------CCc
Q 012679          185 PVT--SVNWAP---DGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGM-------DGL  247 (458)
Q Consensus       185 ~V~--~v~~s~---~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~-------dg~  247 (458)
                      ...  .+++..   ||+||.+-. .+..|...++...++-+.+.......+..+.+    +..+++++++       ||.
T Consensus       127 D~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~  206 (638)
T 3sbq_A          127 DCHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGK  206 (638)
T ss_dssp             CCCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             CcCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCc
Confidence            122  333332   678888876 45678888998888777776657788888887    3467777764       232


Q ss_pred             EE---------E---EEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC---------------cEEEEeCCC--
Q 012679          248 II---------N---NDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN---------------LLHIWDRSM--  298 (458)
Q Consensus       248 i~---------v---wd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg---------------~i~iwd~~~--  298 (458)
                      ..         +   .|..+.+...+...  .+....+...+++++.++.+.+.               .+.++++..  
T Consensus       207 ~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie  284 (638)
T 3sbq_A          207 VFDLQDENSYTMYNAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE  284 (638)
T ss_dssp             CCCTTSTTEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH
T ss_pred             ccccCChhhceEEEEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH
Confidence            11         0   11111111111111  12223344567777777655321               244444211  


Q ss_pred             -----CCCCCcc---ee-------------eeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCC------C
Q 012679          299 -----ASSNSVT---QW-------------LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTG------A  351 (458)
Q Consensus       299 -----~~~~~~~---~~-------------~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~------~  351 (458)
                           ++.....   .+             +..+-.-......+..+|+|.++++++-  .+.++.++|+...      +
T Consensus       285 ~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k  362 (638)
T 3sbq_A          285 AAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGK  362 (638)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTC
T ss_pred             HHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhcc
Confidence                 1000000   00             1111111223457889999999999876  8999999998742      2


Q ss_pred             -------eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----------eeeEEEeCCCCcEEEEEE---
Q 012679          352 -------CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----------VKMAELSGHTSRVLFMAQ---  411 (458)
Q Consensus       352 -------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----------~~~~~~~~h~~~V~~l~~---  411 (458)
                             .+.....+-.....+|.++| ..+++ -+-|.+|.-|++...          ..+..+.-|-.+ -.+..   
T Consensus       363 ~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTt-lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~g  439 (638)
T 3sbq_A          363 LADPRDVIVGEPELGLGPLHTTFDGRG-NAYTT-LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLC  439 (638)
T ss_dssp             CSCGGGGEEECCBCCSCEEEEEECSSS-EEEEE-ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTT
T ss_pred             ccCcccceEeeccCCCcccEEEECCCC-ceEee-eeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCC
Confidence                   24445566778899999999 33333 668999999998653          345556655543 23333   


Q ss_pred             ---cCCCCEEEEEeC---CCcE----------EEEecCCC
Q 012679          412 ---SPDGCTVASAAA---DETL----------RFWNVFGA  435 (458)
Q Consensus       412 ---spdg~~l~s~s~---Dg~i----------~iW~~~~~  435 (458)
                         .|||++|++...   |..+          .+.|+.+.
T Consensus       440 et~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd  479 (638)
T 3sbq_A          440 ETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD  479 (638)
T ss_dssp             TSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred             ccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence               578999988753   5433          66777554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.48  E-value=0.69  Score=45.58  Aligned_cols=231  Identities=10%  Similarity=0.036  Sum_probs=135.9

Q ss_pred             EEEEecCCeEEEEeCCCceeeEEecCCCc--------------------------ccEEEEEe-----CCCeEEEEe-CC
Q 012679          198 IAIGLNNCQVQLWDSTANRQLRTLRGGHR--------------------------SRVGSLAW-----NNHILTTGG-MD  245 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------~~v~~l~~-----~~~~l~sg~-~d  245 (458)
                      +.+|+..|.|+|+-+.+++.+..+..-..                          .--..+++     +|++|+.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            67888999999999999988877653000                          00012333     356666665 35


Q ss_pred             CcEEEEEccCCCeeEEEEcccccceEeEEEc--CCCCEEEEEEC-------CCcEEEEeCCCCCCCCcceeeeeeccc--
Q 012679          246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWS--ASGQQLASGGN-------DNLLHIWDRSMASSNSVTQWLHRLEEH--  314 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s--pd~~~l~sg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~h--  314 (458)
                      ..|...+++..++-.-.-......+.++.|-  |+..|++.+++       ||..  .++.....  . .....+...  
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~--y-~~f~~iD~~tm  227 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENS--Y-TMYNAIDAETM  227 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTE--E-EEEEEEETTTC
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhh--c-eEEEEEcCCcc
Confidence            6677777776554221222456678888886  78888888875       3321  10011100  0 000111111  


Q ss_pred             --------ccceeEEEecCCCCcEEEEeCCCC------------------------------------CC-eEEEEECCC
Q 012679          315 --------TSAVKAIAWCPFQSNLLATGGGGG------------------------------------DR-CIKFWNTHT  349 (458)
Q Consensus       315 --------~~~v~~l~~~p~~~~ll~s~~g~~------------------------------------d~-~i~lwd~~~  349 (458)
                              .+..-.+...+++.+.+.++-.+.                                    ++ .+.+.|.+.
T Consensus       228 ~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~  307 (638)
T 3sbq_A          228 EMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRK  307 (638)
T ss_dssp             SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSC
T ss_pred             EEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccc
Confidence                    112223444566666666663111                                    11 245555554


Q ss_pred             ----C-CeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-------------eEEEeCCCCcEEEEEE
Q 012679          350 ----G-ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-------------MAELSGHTSRVLFMAQ  411 (458)
Q Consensus       350 ----~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-------------~~~~~~h~~~V~~l~~  411 (458)
                          + ..+..+........+..+|+|++++++ |-.+.++.++|+.....             +.+.+ -....+..+|
T Consensus       308 ~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~F  385 (638)
T 3sbq_A          308 KDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTF  385 (638)
T ss_dssp             BTTBCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEE
T ss_pred             ccccCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEE
Confidence                2 233444455566778899999999987 66789999999875321             22333 2345688999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCC
Q 012679          412 SPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .++|....|--.|..|.-|++...
T Consensus       386 d~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          386 DGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCCCceEeeeeecceEEEEeccHH
Confidence            999965556668999999999653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.46  E-value=0.27  Score=50.82  Aligned_cols=201  Identities=13%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             CCCCEEEEEecC----CeEEEEeCCCceeeEEe-c------CCCcccEEEEEe--CCCeEEEEeCCC------cEEEEEc
Q 012679          193 PDGRHIAIGLNN----CQVQLWDSTANRQLRTL-R------GGHRSRVGSLAW--NNHILTTGGMDG------LIINNDV  253 (458)
Q Consensus       193 ~~g~~la~g~~d----g~v~iwd~~~~~~~~~~-~------~~~~~~v~~l~~--~~~~l~sg~~dg------~i~vwd~  253 (458)
                      -++..++.|+.+    ..+.+||..+++-...- .      ............  ++.+++.|+.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466777777753    36889998876543322 1      112223445666  778888887543      5788898


Q ss_pred             cCCCeeE-EEEcccccceEeEEEcCCCCEEEEEECCC--cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          254 RVRDHIV-ETYRGHNQEVCGLKWSASGQQLASGGNDN--LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       254 ~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      .+..... ..+.. ...-.+++...++++++.||.++  .+.+||..+..-..... ............++.+......+
T Consensus       476 ~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~-~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP-KDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC-SSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC-CCCCCCcccceeEEEEeCCCCEE
Confidence            7654211 11111 11112233324888888888655  68999987754311000 00011111122335555544667


Q ss_pred             EEEeCCCCC-----CeEEEEECCCCC------eeEEEeC--CCC-eEEEEEcCCCCeEEEEecCC-------CCcEEEEe
Q 012679          331 LATGGGGGD-----RCIKFWNTHTGA------CLNSVDT--GSQ-VCALLWNKNERELLSSHGFT-------QNQLTLWK  389 (458)
Q Consensus       331 l~s~~g~~d-----~~i~lwd~~~~~------~~~~~~~--~~~-v~~~~~s~~~~~l~~~~g~~-------d~~i~iwd  389 (458)
                      ++.||...+     ..+.+||+.+..      .......  ... -.+++...+++ |++.+|..       .+.+.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeEEEEE
Confidence            777753223     468999998877      2222111  111 11222222244 44443532       45699999


Q ss_pred             CCCceee
Q 012679          390 YPSMVKM  396 (458)
Q Consensus       390 ~~~~~~~  396 (458)
                      ..+.+-.
T Consensus       633 ~~t~~W~  639 (695)
T 2zwa_A          633 PLSETLT  639 (695)
T ss_dssp             TTTTEEE
T ss_pred             CCCCeEE
Confidence            9876543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.25  Score=45.93  Aligned_cols=106  Identities=5%  Similarity=-0.105  Sum_probs=66.8

Q ss_pred             CEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEE--eCCCcEEEEEccCCCeeEEEEcc---c
Q 012679          196 RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTG--GMDGLIINNDVRVRDHIVETYRG---H  266 (458)
Q Consensus       196 ~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~---h  266 (458)
                      ..+++++.||.|.-+|..+|+.+.++......++....-    .+..++.+  +.||.|..++..++......-..   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            478899999999999999999999987531123332221    12234444  68999999998766432111110   1


Q ss_pred             ccceEe---EEE-----cCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          267 NQEVCG---LKW-----SASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       267 ~~~v~~---l~~-----spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      ..++..   ...     ...+..+++|+.+|.+.-.|+.+++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            111111   000     01456788999999999999999876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.21  E-value=0.29  Score=45.67  Aligned_cols=152  Identities=13%  Similarity=0.028  Sum_probs=86.7

Q ss_pred             EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee----cccccceeEEEecCC---CCcEEEEeC
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL----EEHTSAVKAIAWCPF---QSNLLATGG  335 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~---~~~ll~s~~  335 (458)
                      +...-.....|+|.|||.++++--..|.|++++...+..    ..+..+    .........|+++|+   +..++++-+
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            333345677999999999777765589999998654432    112111    223456789999995   455555422


Q ss_pred             CCCCCeEEEEECCCC----------Cee-EEEeC--CCCeEEEEEcCCCCeEEEEecC------------CCCcEEEEeC
Q 012679          336 GGGDRCIKFWNTHTG----------ACL-NSVDT--GSQVCALLWNKNERELLSSHGF------------TQNQLTLWKY  390 (458)
Q Consensus       336 g~~d~~i~lwd~~~~----------~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~g~------------~d~~i~iwd~  390 (458)
                      ...++.|.-|....+          +.+ ..+..  .+....+.|.|+|...++. |.            ..|.|.-++.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEeC
Confidence            123455666655441          111 12221  2345679999999755553 42            1245555554


Q ss_pred             CCc---------eeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679          391 PSM---------VKMAELSGHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       391 ~~~---------~~~~~~~~h~~~V~~l~~spdg~~l~s~  421 (458)
                      ...         ..+. -.+|.. ...++|+|+|.+.++-
T Consensus       182 dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          182 DGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred             CCCccCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence            321         1121 235554 4589999998766654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.06  E-value=1.2  Score=43.33  Aligned_cols=104  Identities=9%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEecCC-----CcccEEEEEeC-----CCeEEEEeC-------
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLRGG-----HRSRVGSLAWN-----NHILTTGGM-------  244 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~~~-----~~~~v~~l~~~-----~~~l~sg~~-------  244 (458)
                      .....|+|.|+|+++++-...+.|.+++..+++.  +..+...     .......|+|+     +..|.....       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            4578999999998666544335798888655543  2223210     23556789996     445554432       


Q ss_pred             ------CCcEEEEEccCCC-------eeEEEEcc-cccceEeEEEcCCCCEEEEEEC
Q 012679          245 ------DGLIINNDVRVRD-------HIVETYRG-HNQEVCGLKWSASGQQLASGGN  287 (458)
Q Consensus       245 ------dg~i~vwd~~~~~-------~~~~~~~~-h~~~v~~l~~spd~~~l~sg~~  287 (458)
                            ...|.-+++....       .++..+.. .......|.|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  2356666554321       11222221 1234688999999998777553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.94  E-value=0.23  Score=46.53  Aligned_cols=151  Identities=11%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCC---CCcEEEEeCC-CC----C
Q 012679          268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF---QSNLLATGGG-GG----D  339 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~ll~s~~g-~~----d  339 (458)
                      .....|+|.|+|+.|+++...|.|++++.........................|+++|+   +..++++... ..    .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45678999999993445567799999985322110000000011122345678999996   5666665421 01    2


Q ss_pred             CeEEEEECCCC--C--eeEEE----e----CCCCeEEEEEcCCCCeEEEEecCC------------CCcEEEEeCCCce-
Q 012679          340 RCIKFWNTHTG--A--CLNSV----D----TGSQVCALLWNKNERELLSSHGFT------------QNQLTLWKYPSMV-  394 (458)
Q Consensus       340 ~~i~lwd~~~~--~--~~~~~----~----~~~~v~~~~~s~~~~~l~~~~g~~------------d~~i~iwd~~~~~-  394 (458)
                      ..|..|+...+  .  ....+    .    .......+.|.|+|. |+++.|..            .+.|.-++....- 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            35666666533  1  11111    1    112356799999995 54444432            2456666654220 


Q ss_pred             -----------eeEE-EeCCCCcEEEEEEcC-CCCEEEE
Q 012679          395 -----------KMAE-LSGHTSRVLFMAQSP-DGCTVAS  420 (458)
Q Consensus       395 -----------~~~~-~~~h~~~V~~l~~sp-dg~~l~s  420 (458)
                                 .... -.+|. ....++|+| +|.+.++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence                       1111 12443 367899999 6655554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.64  E-value=1.4  Score=41.09  Aligned_cols=227  Identities=13%  Similarity=0.101  Sum_probs=119.1

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEec---CCCCCEEEEEEcCC---CCEEEEEec----C----CeEE
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVD---DENGPVTSVNWAPD---GRHIAIGLN----N----CQVQ  208 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~---~h~~~V~~v~~s~~---g~~la~g~~----d----g~v~  208 (458)
                      ...+.|.+ ++++++..++.|++++ .+++ ..+..+.   ........|+++|+   +..|.++..    +    +.|.
T Consensus        31 P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~  108 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI  108 (354)
T ss_dssp             EEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred             CeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence            34566765 5677778889999997 4554 3344332   22356899999997   556655543    2    5677


Q ss_pred             EEeCCCc-------eee-EEecCCCcccEEEEEe--CCCeEEEEeC-------------CCcEEEEEccCCC-------e
Q 012679          209 LWDSTAN-------RQL-RTLRGGHRSRVGSLAW--NNHILTTGGM-------------DGLIINNDVRVRD-------H  258 (458)
Q Consensus       209 iwd~~~~-------~~~-~~~~~~~~~~v~~l~~--~~~~l~sg~~-------------dg~i~vwd~~~~~-------~  258 (458)
                      .|+....       +.+ ..+..........|.|  ++.++++.+.             .|.|.-++....-       .
T Consensus       109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~  188 (354)
T 3a9g_A          109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN  188 (354)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred             EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence            7776543       111 1222111112345777  5665555332             2456555554320       0


Q ss_pred             eEEEEcccccceEeEEEcC-CCCEEEEEECCC---cEEEEeCCCCCC------------CCcceeeeeecccccceeEEE
Q 012679          259 IVETYRGHNQEVCGLKWSA-SGQQLASGGNDN---LLHIWDRSMASS------------NSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       259 ~~~~~~~h~~~v~~l~~sp-d~~~l~sg~~dg---~i~iwd~~~~~~------------~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      ......++. ....++|+| +++++++-...+   .|.+..  .+..            .....++..+.........++
T Consensus       189 ~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          189 SPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             CCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence            011122333 346799999 566555433222   243332  1110            000112333311234567788


Q ss_pred             ecC------CCCcEEEEeCCCCCCeEEEEECCCC-Cee--EEEeC--CCCeEEEEEcCCCCeEEEE
Q 012679          323 WCP------FQSNLLATGGGGGDRCIKFWNTHTG-ACL--NSVDT--GSQVCALLWNKNERELLSS  377 (458)
Q Consensus       323 ~~p------~~~~ll~s~~g~~d~~i~lwd~~~~-~~~--~~~~~--~~~v~~~~~s~~~~~l~~~  377 (458)
                      |..      ....++++.-  ..+.|...++... +..  ..+-.  ...+..+++.|+|..+++.
T Consensus       266 ~y~g~~fp~~~G~l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACL--RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEET--TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             EECCCCCcccCCcEEEEEc--CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            732      2346666554  5678888888753 332  22322  3568899999998666653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.47  E-value=1.3  Score=43.00  Aligned_cols=107  Identities=11%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc------cccceeEEEecCC---CCcEEEEeCC-
Q 012679          267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE------HTSAVKAIAWCPF---QSNLLATGGG-  336 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~---~~~ll~s~~g-  336 (458)
                      -....+|+|.|+|+++++-...+.|++++...+..    ..+..+..      .......|+|+|+   +..++++.+. 
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~  101 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK  101 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence            34567999999999777654445788887654332    11222211      2355679999996   5666665431 


Q ss_pred             ---CC------CCeEEEEECCCC--C-----eeE-EEeC--CCCeEEEEEcCCCCeEEEE
Q 012679          337 ---GG------DRCIKFWNTHTG--A-----CLN-SVDT--GSQVCALLWNKNERELLSS  377 (458)
Q Consensus       337 ---~~------d~~i~lwd~~~~--~-----~~~-~~~~--~~~v~~~~~s~~~~~l~~~  377 (458)
                         ..      ...|.-++...+  .     .+. .+..  .+....++|.|+|...++.
T Consensus       102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence               00      234555554332  1     111 1221  2457899999999766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.26  E-value=0.6  Score=51.30  Aligned_cols=155  Identities=12%  Similarity=0.210  Sum_probs=98.0

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC----CCCEEEEEEcCCCCEEEEEe-------cCCeEEEEeC
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDE----NGPVTSVNWAPDGRHIAIGL-------NNCQVQLWDS  212 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h----~~~V~~v~~s~~g~~la~g~-------~dg~v~iwd~  212 (458)
                      +.-+.|-..+.++.-.+..|+-|++.... .+..-+..|    ...|..-.-+++.++++..+       -.|.+++|.+
T Consensus       108 VvfWkWis~~~l~lVT~~aVyHW~~~~~s-~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~  186 (1630)
T 1xi4_A          108 VTFWKWISLNTVALVTDNAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  186 (1630)
T ss_pred             ceEEEecCCCeeEEEcCCeEEEeccCCCC-ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence            55688988888999999999999996422 222222322    45677778888999887643       3578999987


Q ss_pred             CCceeeEEecCCCcccEEEEEeCC-----CeEEEEeC---CCcEEEEEccCC---Cee-----EEEEc---ccccceEeE
Q 012679          213 TANRQLRTLRGGHRSRVGSLAWNN-----HILTTGGM---DGLIINNDVRVR---DHI-----VETYR---GHNQEVCGL  273 (458)
Q Consensus       213 ~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sg~~---dg~i~vwd~~~~---~~~-----~~~~~---~h~~~v~~l  273 (458)
                      +.+. -+.+.+ |.+....+..+|     .+++.+.+   .+.++|-++...   ...     +..+.   ....-..++
T Consensus       187 er~~-sQ~ieg-ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~  264 (1630)
T 1xi4_A          187 DRKV-SQPIEG-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  264 (1630)
T ss_pred             cccc-chhhhH-hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence            6543 223333 655555544432     22332222   268888888543   100     01110   112233457


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          274 KWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      ..++.-..+..-+.-|.|+++|+.++..
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchh
Confidence            7777777888888999999999999876

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.04  E-value=2  Score=39.12  Aligned_cols=236  Identities=10%  Similarity=0.002  Sum_probs=130.1

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecC--------------CeEEEEeCCCceeeEEecCCC
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNN--------------CQVQLWDSTANRQLRTLRGGH  225 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~d--------------g~v~iwd~~~~~~~~~~~~~~  225 (458)
                      ++.|+..+.+.....++..-       .+--++++|.+|+.....              ..|+..++..++... +..  
T Consensus        36 ~~~ly~~~~dg~~~~~l~~~-------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--  105 (302)
T 3s25_A           36 NGRLYAMNIDGSNIHKLSND-------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--  105 (302)
T ss_dssp             TTEEEEEETTSCSCEEEEEE-------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--
T ss_pred             CceEEEEcCCCCCCEEccCC-------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--
Confidence            57788888766665444321       234457899998887653              357777777665333 221  


Q ss_pred             cccEEEEEeCCCeEEEEe--CCC--cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCC
Q 012679          226 RSRVGSLAWNNHILTTGG--MDG--LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMAS  300 (458)
Q Consensus       226 ~~~v~~l~~~~~~l~sg~--~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~  300 (458)
                       .....++..++.|+-..  .++  .|..-++....  ...+..+..    ..++++++.|.-.+. ...|.+-++....
T Consensus       106 -~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          106 -DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             -SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred             -CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence             22335666777777665  344  45555554333  334443332    345778888876655 5778888876554


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      .       ..+..  +.. ...+.|++..++.+..+ ....|..-++..+... .+ ....+  ..|+|++..|+.+...
T Consensus       179 ~-------~~l~~--~~~-~~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~-~L-t~~~~--~~~~~~g~~Iy~~~~~  243 (302)
T 3s25_A          179 E-------ALFYD--CNC-YKPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPV-VL-TEANI--EHYNVYGSLIFYQRGG  243 (302)
T ss_dssp             E-------EEEEC--SCE-EEEEEEETTEEEEEEGG-GTTEEEEECSSSCCCE-EC-SCSCE--EEEEEETTEEEEEECS
T ss_pred             E-------EEEeC--CCc-cceeeecCCEEEEEEcC-CCcEEEEEECCCCCeE-EE-eCCCc--ceEEECCCEEEEEECC
Confidence            2       12211  112 23456888888887641 2246777777655432 22 22333  3478889888875333


Q ss_pred             CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q 012679          381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAA-ADETLRFWNV  432 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iW~~  432 (458)
                      ..+.|..-++..........+   .+..+  ++.+.+|.-.. ..+.|..-++
T Consensus       244 ~~~~i~~~~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          244 DNPALCVVKNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             SSCEEEEEETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEES
T ss_pred             CCcEEEEEECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEEC
Confidence            346777777765433222222   23333  44556665554 3344443343

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.50  E-value=0.66  Score=39.99  Aligned_cols=134  Identities=9%  Similarity=0.039  Sum_probs=75.0

Q ss_pred             CeEEEEcCCEEEEEECCCCCee----eEEEecC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee------eEEe
Q 012679          153 NVLAIALGSTVYLWDASDGTTS----ELVTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ------LRTL  221 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~----~~~~~~~-h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~------~~~~  221 (458)
                      .|+++..| +|+.=...++...    ...++.. .=..+.+++|+|+|.+.++  .+|.+.-.+..+...      -..+
T Consensus         6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I   82 (236)
T 1tl2_A            6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI   82 (236)
T ss_dssp             CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred             EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence            35555555 6666655555410    1222221 1236789999999987666  788777766544221      1111


Q ss_pred             cCCCcccEEEEEeCC--CeEEEEeCCCcEEEEEccCCCee------EEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          222 RGGHRSRVGSLAWNN--HILTTGGMDGLIINNDVRVRDHI------VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       222 ~~~~~~~v~~l~~~~--~~l~sg~~dg~i~vwd~~~~~~~------~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                      -..--....++.|++  .+.++  .||.|+-++..+...-      ...-..--..+..|.+.|+|.+.++.  |+.++-
T Consensus        83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A           83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            110111146677764  44444  6699987776432210      11111223578999999999988877  777543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.40  E-value=2.2  Score=36.73  Aligned_cols=153  Identities=11%  Similarity=0.044  Sum_probs=86.9

Q ss_pred             cceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679          268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      ..+..++|+|+|.+.++  .+|.++-.+..+.....-...-..+-. --....++.|.|++ .|.++    .||.|+-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav----~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV----SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE----ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe----CCCEEEEeC
Confidence            46779999999997777  667776666544322110000011100 01114789999964 45444    368998887


Q ss_pred             CCCCCee------EEEeC--CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce------eeEEEe-CCCCcEEEEEE
Q 012679          347 THTGACL------NSVDT--GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV------KMAELS-GHTSRVLFMAQ  411 (458)
Q Consensus       347 ~~~~~~~------~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~------~~~~~~-~h~~~V~~l~~  411 (458)
                      -.+...-      ..+..  -..+..+.+.|+|...++.    ++.++-...++..      ....+- +.-..-..+.|
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~----dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH----GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE----TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe----CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence            6442211      11111  1357899999999988873    5555544444221      111121 23334566789


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCC
Q 012679          412 SPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       412 spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      .++|.+.+..  +|  +||....+
T Consensus       190 ~~~G~l~~v~--~g--~~Y~~~~p  209 (236)
T 1tl2_A          190 SSVGTLFGVQ--GG--KFYEDYPP  209 (236)
T ss_dssp             CTTSCEEEEE--TT--EEEEESCC
T ss_pred             CCCCcEEEEe--CC--eEEecCCc
Confidence            9999877755  66  66766444

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.27  E-value=6.1  Score=35.40  Aligned_cols=238  Identities=17%  Similarity=0.159  Sum_probs=124.3

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCC-CCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASD-GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +..++-.....++.. +|.|+.|-... +++- + .. .....|..|+...+. .++. . ||.|..|-......+..-.
T Consensus        26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg-~-p~-~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLT-M-PA-ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             CCEEEECSSEEEEEE-TTEEEEEECCSSSTTS-C-CG-GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC-C-Cc-cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            344555556667776 99999997654 2221 0 00 112357777765432 3333 4 9999999765433222111


Q ss_pred             CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC
Q 012679          223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN  302 (458)
Q Consensus       223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~  302 (458)
                      . -...|..++......+.-. +|.|+.|-......+- ........|..++.-.+.  .+.-. ||.|+.|-.......
T Consensus        99 ~-~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql  172 (282)
T 3qhy_B           99 E-ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT  172 (282)
T ss_dssp             G-GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred             c-cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence            1 2346888888665555566 9999999765433211 111123456666654332  22233 799999976654331


Q ss_pred             CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-EEeCCCCeEEEEEcCCCCeEEEEecCC
Q 012679          303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-SVDTGSQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                      ...      ..-...|..++-..  ...++.    .||.|..|=......+- .......|..++..... .++.  .  
T Consensus       173 g~p------~~~~~~v~~i~~G~--~hs~al----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al--~--  235 (282)
T 3qhy_B          173 TVP------AEAQSGVDDVAGGI--FHSLAL----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--K--  235 (282)
T ss_dssp             SCC------GGGGSSEEEEEECS--SEEEEE----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--E--
T ss_pred             CCc------eecCCCeEEEEecC--CEEEEE----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE--E--
Confidence            110      01134566666544  233333    37889999655422111 11112345555543332 2222  2  


Q ss_pred             CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCC
Q 012679          382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDG  415 (458)
Q Consensus       382 d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg  415 (458)
                      +|.|..|-.....++..    ...|..++.....
T Consensus       236 ~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h  265 (282)
T 3qhy_B          236 NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA  265 (282)
T ss_dssp             TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred             CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence            67888887665433321    2356666665543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.13  E-value=6.3  Score=35.29  Aligned_cols=224  Identities=15%  Similarity=0.060  Sum_probs=115.4

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEc
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYR  264 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  264 (458)
                      .|..|+.... ..++. . ||.|..|-......+..-.. ....|..++......+.-. ||.|+.|-......+-. -.
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~-~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P~   98 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAA-TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-PA   98 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGG-GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-CG
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCcc-CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-Cc
Confidence            5677765433 22333 5 89999997654332221111 3346777887544333335 99999997654332111 01


Q ss_pred             ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679          265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF  344 (458)
Q Consensus       265 ~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l  344 (458)
                      .-...|..++...+  +.+.-. ||.|+.|-........      ........|..++...  ...++.    .|+.|..
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg------~~~~~~~~i~~i~~G~--~~~~~l----~~G~v~~  163 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT------VPAEAQSGVTALDGGV--YTALAV----KNGGVIA  163 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECS--SEEEEE----ETTEEEE
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC------CCccCCCCeEEEEccc--CEEEEE----ECCEEEE
Confidence            11235766666433  333344 8999999865533211      0111234566666544  223332    3688888


Q ss_pred             EECCCCCeeE-EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          345 WNTHTGACLN-SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       345 wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      |-......+. .......|..++.......++     .+|.|..|-.....++..-......|..++...+...+++   
T Consensus       164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---  235 (282)
T 3qhy_B          164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---  235 (282)
T ss_dssp             EECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---
T ss_pred             ecCCCCCCCCCceecCCCeEEEEecCCEEEEE-----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---
Confidence            8765422111 111123455555433322222     3778888876543222111111245777777655433333   


Q ss_pred             CCcEEEEecCCCCc
Q 012679          424 DETLRFWNVFGAPQ  437 (458)
Q Consensus       424 Dg~i~iW~~~~~~~  437 (458)
                      ||.|..|=-....+
T Consensus       236 ~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          236 NGKVIAWGSSRTAP  249 (282)
T ss_dssp             TTEEEEESTTCCCC
T ss_pred             CCEEEEecCCCCcc
Confidence            99999997665433

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.60  E-value=16  Score=35.42  Aligned_cols=248  Identities=9%  Similarity=0.045  Sum_probs=120.7

Q ss_pred             CCEEEEEEcCCCC-EEEEEecCCeEEEEeCCCc---eeeEEecC--------CCcccEEEEEeCCC-----eEE-EEeC-
Q 012679          184 GPVTSVNWAPDGR-HIAIGLNNCQVQLWDSTAN---RQLRTLRG--------GHRSRVGSLAWNNH-----ILT-TGGM-  244 (458)
Q Consensus       184 ~~V~~v~~s~~g~-~la~g~~dg~v~iwd~~~~---~~~~~~~~--------~~~~~v~~l~~~~~-----~l~-sg~~-  244 (458)
                      .....|+|.|||. .|+++...|.|++++....   ..+..+..        ........|++++.     .|. +-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3468999999996 5666778999999975432   12222221        01356788999753     333 3221 


Q ss_pred             -C----------CcEEEEEccCC---------CeeEEEEc--ccccceEeEEEcCCCCEEEEEECCC-------------
Q 012679          245 -D----------GLIINNDVRVR---------DHIVETYR--GHNQEVCGLKWSASGQQLASGGNDN-------------  289 (458)
Q Consensus       245 -d----------g~i~vwd~~~~---------~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg-------------  289 (458)
                       +          ..|.-|.+...         ...+..+.  ........|.|.|||.+.++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          13444555321         11222221  2223457899999998877766533             


Q ss_pred             ----cEEEEeCCCC------CCCC--c--c----eeeeeecccccceeEEEecCCCC----c-EEEEeC-CCCC-CeEEE
Q 012679          290 ----LLHIWDRSMA------SSNS--V--T----QWLHRLEEHTSAVKAIAWCPFQS----N-LLATGG-GGGD-RCIKF  344 (458)
Q Consensus       290 ----~i~iwd~~~~------~~~~--~--~----~~~~~~~~h~~~v~~l~~~p~~~----~-ll~s~~-g~~d-~~i~l  344 (458)
                          .|.-.|....      ..+.  .  .    .+..--.+|.. ...++|.|...    . .+..+. +..+ ..-.|
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei  252 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI  252 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence                2333343321      0000  0  0    00001113333 35789999632    2 233221 0011 11233


Q ss_pred             EECCCC------CeeEEEeCC--CCeEEEEEcCC-------CCeEEEEecCCCCcEEEEeCCCce---eeEEE-e-----
Q 012679          345 WNTHTG------ACLNSVDTG--SQVCALLWNKN-------ERELLSSHGFTQNQLTLWKYPSMV---KMAEL-S-----  400 (458)
Q Consensus       345 wd~~~~------~~~~~~~~~--~~v~~~~~s~~-------~~~l~~~~g~~d~~i~iwd~~~~~---~~~~~-~-----  400 (458)
                      ..+..+      .++..+...  ..+..+.|...       +.+++...  . +.|....+....   ....+ .     
T Consensus       253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~--~-g~i~~~~~~~~~~~~~~~~~~~g~~~~  329 (463)
T 2wg3_C          253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDR--N-GNFLTLQQSPVTKQWQEKPLCLGTSGS  329 (463)
T ss_dssp             EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEET--T-SCEEEEEC-----CCEEEEECEEETTS
T ss_pred             eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecC--C-CcEEEEEeCCCCceeeEEEeecCCccc
Confidence            333322      244444433  45777777543       33455432  2 556555554321   11112 1     


Q ss_pred             ---CCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCC
Q 012679          401 ---GHTSRVLFMAQSPDGCTVASAAAD-----ETLRFWNVFGA  435 (458)
Q Consensus       401 ---~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iW~~~~~  435 (458)
                         ....++..+++.|||.++++....     ..=+||.|...
T Consensus       330 ~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p  372 (463)
T 2wg3_C          330 CRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDP  372 (463)
T ss_dssp             SCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECT
T ss_pred             ccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCc
Confidence               123679999999999988876521     23467888643

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.50  E-value=19  Score=33.73  Aligned_cols=213  Identities=9%  Similarity=0.000  Sum_probs=101.4

Q ss_pred             CCeEEEEcCCEEEEEECCC--CCeeeEEEecCCCCCEEEEEEcC-CCCEEEEEecCC----eEEEEeCCCceeeEEecCC
Q 012679          152 SNVLAIALGSTVYLWDASD--GTTSELVTVDDENGPVTSVNWAP-DGRHIAIGLNNC----QVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~--~~~~~~~~~~~h~~~V~~v~~s~-~g~~la~g~~dg----~v~iwd~~~~~~~~~~~~~  224 (458)
                      ..++++...| +.+++...  ......... .....|.+|++.| +...|.+++..|    .|...+ ..++.-..+...
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~   99 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP   99 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence            4566776655 66666443  344333211 2245699999998 334455565555    444432 233322222210


Q ss_pred             -------------CcccEEEEEeC----CCeEEEEeCCCcEEEEEccCCCeeEEEEcc-------------------ccc
Q 012679          225 -------------HRSRVGSLAWN----NHILTTGGMDGLIINNDVRVRDHIVETYRG-------------------HNQ  268 (458)
Q Consensus       225 -------------~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-------------------h~~  268 (458)
                                   ....|.+++++    +..|.+++..+.|...+-. +.. ...+..                   ...
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~t-W~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GAS-WEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSB-CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCC-eEECcCccCCccccccccccccCCCCCC
Confidence                         11257788885    5677777766666554322 111 122211                   123


Q ss_pred             ceEeEEEcCC-CCEEEEEECCCcEEEEeCCCCCCCCcceeeee-ecc-c--------ccceeEEEecCCCCcEEEEeCCC
Q 012679          269 EVCGLKWSAS-GQQLASGGNDNLLHIWDRSMASSNSVTQWLHR-LEE-H--------TSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       269 ~v~~l~~spd-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-h--------~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      .+.+|.+.|. ...|..+..++.|...+-....-    +.+.. ... +        ...+.+|+++|.....+..+.  
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW----~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--  251 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDW----KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--  251 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSC----EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCc----eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--
Confidence            5788999883 44455555444444433211111    00000 000 0        134788999986544444443  


Q ss_pred             CCCeEEEEECCCCCeeEEEe--CC----CCeEEEEEcCC-CCeEEEE
Q 012679          338 GDRCIKFWNTHTGACLNSVD--TG----SQVCALLWNKN-ERELLSS  377 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~--~~----~~v~~~~~s~~-~~~l~~~  377 (458)
                      . +.|...+- .++.-..+.  ..    ..+..+.++|. ...++++
T Consensus       252 ~-~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          252 H-CGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             T-TEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             C-CeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            3 33444432 233222222  11    23567778763 3444443

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=86.37  E-value=32  Score=35.30  Aligned_cols=232  Identities=9%  Similarity=0.022  Sum_probs=116.6

Q ss_pred             EcCCCCEEEEEecCC-----eEEEEeCCCceeeEE-ecCCCcc------cEEEEEe-CCCeEEEEe-----------CCC
Q 012679          191 WAPDGRHIAIGLNNC-----QVQLWDSTANRQLRT-LRGGHRS------RVGSLAW-NNHILTTGG-----------MDG  246 (458)
Q Consensus       191 ~s~~g~~la~g~~dg-----~v~iwd~~~~~~~~~-~~~~~~~------~v~~l~~-~~~~l~sg~-----------~dg  246 (458)
                      ++|++++++.+-+.|     .++++|+.+++.+.. +...-..      ....++| +++.++.+.           ...
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~  216 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN  216 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence            788998888764433     699999999987742 1100000      1234577 444444432           124


Q ss_pred             cEEEEEccCCCe-eEEEEcccccc-eEeEEEcCCCC-----EEEEEECC---CcEEEEeCCCCCCCCcceeeeeeccccc
Q 012679          247 LIINNDVRVRDH-IVETYRGHNQE-VCGLKWSASGQ-----QLASGGND---NLLHIWDRSMASSNSVTQWLHRLEEHTS  316 (458)
Q Consensus       247 ~i~vwd~~~~~~-~~~~~~~h~~~-v~~l~~spd~~-----~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~  316 (458)
                      .|+.|.+-+... -...+.+.... -.+...+++++     .+++.+.+   ..+.+.|.......     ...+.....
T Consensus       217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~  291 (711)
T 4hvt_A          217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-----LQKINMPSD  291 (711)
T ss_dssp             EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-----EEECCSCTT
T ss_pred             EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-----ceEeecCCc
Confidence            688887765531 12233332222 23455566766     24444422   45666665432221     122221111


Q ss_pred             ceeEEEecCCCCcEEEEeCC--------CCCCeEEEEECCCCC-------eeEE-EeC--CCCeEEEEEcCCCCeEEEEe
Q 012679          317 AVKAIAWCPFQSNLLATGGG--------GGDRCIKFWNTHTGA-------CLNS-VDT--GSQVCALLWNKNERELLSSH  378 (458)
Q Consensus       317 ~v~~l~~~p~~~~ll~s~~g--------~~d~~i~lwd~~~~~-------~~~~-~~~--~~~v~~~~~s~~~~~l~~~~  378 (458)
                      .  .+..... ..+++....        ...+.|...|+.++.       .... +..  ...+..+.|..+ ..+++..
T Consensus       292 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          292 A--TLQGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             C--EEEEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             c--eEeeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            1  1223333 344442210        135678888887642       1222 322  334778888876 3444432


Q ss_pred             cCCCC--cEEEEeCCCce-eeEE-EeCC-CCcEEEEEEcCCCC-EEEEEeCC---CcEEEEecC
Q 012679          379 GFTQN--QLTLWKYPSMV-KMAE-LSGH-TSRVLFMAQSPDGC-TVASAAAD---ETLRFWNVF  433 (458)
Q Consensus       379 g~~d~--~i~iwd~~~~~-~~~~-~~~h-~~~V~~l~~spdg~-~l~s~s~D---g~i~iW~~~  433 (458)
                        .++  .|.++++.++. .... +.-. .+.+.....++++. ++++.+..   +.+..+|+.
T Consensus       368 --~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          368 --DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             --ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             --ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence              344  57778876664 2333 2211 24566666777665 44444432   567777765

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=85.59  E-value=24  Score=33.08  Aligned_cols=237  Identities=11%  Similarity=0.108  Sum_probs=127.3

Q ss_pred             eeeccCCCeEEEEcCCEEEEEECCC-CC--------eeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          146 LLDWGSSNVLAIALGSTVYLWDASD-GT--------TSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       146 ~~~~~~~~~la~~~d~~v~iwd~~~-~~--------~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      .++-.....++...+|.|+.|-... ++        ......+. .....+..++.+....+.+.-+.||.|..|-....
T Consensus        57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~  136 (389)
T 3kci_A           57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED  136 (389)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGG
T ss_pred             EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCC
Confidence            3444556788889999999996442 11        11111122 12334666777777777777889999999954321


Q ss_pred             -----------eeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCC---------ee-EEEEcc-cccceEeE
Q 012679          216 -----------RQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRD---------HI-VETYRG-HNQEVCGL  273 (458)
Q Consensus       216 -----------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~---------~~-~~~~~~-h~~~v~~l  273 (458)
                                 .....+.......|..++......++-..+|.|+.|-.....         .. ...+.. ....|..+
T Consensus       137 GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~i  216 (389)
T 3kci_A          137 GKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDI  216 (389)
T ss_dssp             GTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred             CcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEE
Confidence                       111222221234688888877777788889999999653211         00 111111 12346666


Q ss_pred             EEcCCCCEEEEEECCCcEEEEeCCCCCCC------Ccceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679          274 KWSASGQQLASGGNDNLLHIWDRSMASSN------SVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       274 ~~spd~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      +......+.+.-..||.|+.|-.......      ....+ ..+.. ....|..++...  ...++..   .||.|..|=
T Consensus       217 a~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p-~~v~~~~~~~v~~v~~G~--~hs~alt---~~G~v~~wG  290 (389)
T 3kci_A          217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP-MKIDSLTGLGVVKVECGS--QFSVALT---KSGAVYTWG  290 (389)
T ss_dssp             EECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE-EECGGGTTSCEEEEEEET--TEEEEEE---TTSCEEEEE
T ss_pred             EEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc-EEecccCCCcEEEEeCCC--CEEEEEe---CCCeEEEEe
Confidence            65443456667778999999975432110      00111 11111 122466666543  2333332   789999996


Q ss_pred             CCCCC--------ee---EEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          347 THTGA--------CL---NSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       347 ~~~~~--------~~---~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      .....        ..   ..+.  ....|..++.......+++    .+|.|+.|=...
T Consensus       291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~----~~G~v~~wG~n~  345 (389)
T 3kci_A          291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCT----EDGEVYTWGDND  345 (389)
T ss_dssp             CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEE----TTCCEEEEECCT
T ss_pred             CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEEC----CCCCEEEeeCCC
Confidence            54311        01   1111  1234555554333222221    688899887653

>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}

Probab=84.19  E-value=0.47  Score=24.68  Aligned_cols=11  Identities=45%  Similarity=0.803  Sum_probs=8.6

Q ss_pred             CCceeccCCCC
Q 012679           27 NLDRFIPNRSA   37 (458)
Q Consensus        27 ~~dr~ip~~~~   37 (458)
                      .-++|||+|-+
T Consensus         4 ~~eKFiPsRPA   14 (26)
T 2rqw_B            4 ANGKFIPSRPA   14 (26)
T ss_dssp             CCCSSCCSSCC
T ss_pred             cccccccCCCC
Confidence            34899999964

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=82.92  E-value=32  Score=32.41  Aligned_cols=276  Identities=11%  Similarity=0.104  Sum_probs=140.9

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCC-CCe--------eeEEEec-CCCCCEEEEEEcCCCCEEEEEecC-CeEEEEeC
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASD-GTT--------SELVTVD-DENGPVTSVNWAPDGRHIAIGLNN-CQVQLWDS  212 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~-~~~--------~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~d-g~v~iwd~  212 (458)
                      +..++-.....++...++.|+.|-... +++        .....+. .....|..|+...  .+.+.-..+ |.|+.|-.
T Consensus        18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v~~wG~   95 (406)
T 4d9s_A           18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEVYSWGW   95 (406)
T ss_dssp             EEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEEEEEEC
T ss_pred             eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEEEEEcC
Confidence            444666667788999999999996543 111        1111121 1123577776543  333334445 59999954


Q ss_pred             CCce-----------eeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe---------e-EEEEccc-ccce
Q 012679          213 TANR-----------QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH---------I-VETYRGH-NQEV  270 (458)
Q Consensus       213 ~~~~-----------~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~---------~-~~~~~~h-~~~v  270 (458)
                      ...-           ....+.......|..++......+.-..+|.|+.|-......         . ...+... ...|
T Consensus        96 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i  175 (406)
T 4d9s_A           96 GDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRI  175 (406)
T ss_dssp             CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCE
T ss_pred             CCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcE
Confidence            3211           111122113346888888777777788999999997543211         0 1111111 2245


Q ss_pred             EeEEEcCCCCEEEEEECCCcEEEEeCCCCCCC------CcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEE
Q 012679          271 CGLKWSASGQQLASGGNDNLLHIWDRSMASSN------SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKF  344 (458)
Q Consensus       271 ~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~l  344 (458)
                      ..++.  ...+.+.-..||.|+.|-.......      ....+..........|..++...  ...++..   .+|.|+.
T Consensus       176 ~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l~---~~G~v~~  248 (406)
T 4d9s_A          176 KMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISVS---YSGALYT  248 (406)
T ss_dssp             EEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEEE---TTCCEEE
T ss_pred             EEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEEc---CCCCEEE
Confidence            55554  3445566678999999975432211      00111111111123455665543  2333332   6889999


Q ss_pred             EECCCCCe---------e--EEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee-----------eEEEe
Q 012679          345 WNTHTGAC---------L--NSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK-----------MAELS  400 (458)
Q Consensus       345 wd~~~~~~---------~--~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~-----------~~~~~  400 (458)
                      |=......         .  ..+.  ....|..++.-.....+++    .+|.|+.|=....-+           ...+.
T Consensus       249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt----~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  324 (406)
T 4d9s_A          249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALT----SDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR  324 (406)
T ss_dssp             EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEE----TTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred             eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEc----CCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence            96543211         0  1111  1223555544333222222    688888886543111           11111


Q ss_pred             -CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          401 -GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       401 -~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                       .....|..++....  ..+.-..||.|..|=-..
T Consensus       325 ~~~~~~v~~va~G~~--hs~alt~~G~v~~wG~n~  357 (406)
T 4d9s_A          325 FPDDQKVVQVSCGWR--HTLAVTERNNVFAWGRGT  357 (406)
T ss_dssp             CGGGCCEEEEEECSS--EEEEEETTSCEEEEECCT
T ss_pred             ccCCCcEEEEEeCCC--eEEEEeCCCCEEEecCCC
Confidence             12245777766433  444556889999997644

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.17  E-value=28  Score=37.10  Aligned_cols=33  Identities=15%  Similarity=0.106  Sum_probs=28.8

Q ss_pred             ceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          269 EVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                      .+.++...++..++++-+.|+++++|++.++..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            466777888899999999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-23
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-15
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-04
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	1e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 3e-28
 Identities = 60/310 (19%), Positives = 108/310 (34%), Gaps = 72/310 (23%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-------- 234
             PVT V + P    +     +  +++WD       RTL+G H   V  +++        
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLA 75

Query: 235 ------------------------------------NNHILTTGGMDGLIINNDVRVRDH 258
                                               N   + +   D  I   +V+   +
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGY 134

Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
            V+T+ GH + V  ++ +  G  +AS  ND  + +W  +        +    L EH   V
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT------KECKAELREHRHVV 188

Query: 319 KAIAWCPFQSNLLATGG-----------------GGGDRCIKFWNTHTGACLNSVDT-GS 360
           + I+W P  S    +                   G  D+ IK W+  TG CL ++    +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420
            V  +L++   + +LS        L +W Y +   M  L+ H   V  +        V +
Sbjct: 249 WVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 421 AAADETLRFW 430
            + D+T++ W
Sbjct: 307 GSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (174), Expect = 2e-14
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA 199
           +D  + +    +    A        +   S    S   ++ +  G  T  +    G  + 
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG-KPGPFLL 221

Query: 200 IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD 257
            G  +  +++WD +    L TL G H + V  + +      + +   D  +   D +   
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYK-NK 279

Query: 258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD 295
             ++T   H   V  L +  +   + +G  D  + +W+
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 10/171 (5%)

Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321
              GH   V  + +      + S   D  + +WD           +   L+ HT +V+ I
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG------DFERTLKGHTDSVQDI 65

Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFT 381
           ++      L +       +   F        ++  D      +++ N +     S     
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 382 QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           +    +W+  +   +   +GH   V  +  + DG  +AS + D+T+R W V
Sbjct: 126 K----MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWN 368
           + L  H S V  + + P   +++ +     D  IK W+  TG    ++   +     +  
Sbjct: 11  YALSGHRSPVTRVIFHP-VFSVMVS--ASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 369 KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLR 428
            +  + L +       + LW +     +  + GH   V  ++  P+G  + SA+ D+T++
Sbjct: 68  DHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

Query: 429 FWNV 432
            W V
Sbjct: 127 MWEV 130

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.0 bits (245), Expect = 1e-23
 Identities = 44/295 (14%), Positives = 88/295 (29%), Gaps = 55/295 (18%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTG 242
              + +++W  D R +     + ++ +WDS    ++  +       V + A+        
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW-VMTCAYAPSGNYVA 113

Query: 243 GMDGLIINNDVRVRDHIVE----------------------------------------- 261
                 I +   ++                                              
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 262 -----TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS 316
                T+ GH  +V  L  +   +   SG  D    +WD                  H S
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHES 227

Query: 317 AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLS 376
            + AI + P  +           R             +  +    + ++ ++K+ R LL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287

Query: 377 SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
             G+      +W      +   L+GH +RV  +  + DG  VA+ + D  L+ WN
Sbjct: 288 --GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.4 bits (155), Expect = 6e-12
 Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 45/258 (17%)

Query: 216 RQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
           R  RTLRG H +++ ++ W  ++ +L +   DG +I  D     + V      +  V   
Sbjct: 46  RTRRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTC 103

Query: 274 KWSASGQQLASGGNDNLL--------------------------------------HIWD 295
            ++ SG  +A GG DN+                                          D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS 355
            + A  +  T          +           + L  +  G  D   K W+   G C  +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS--GACDASAKLWDVREGMCRQT 221

Query: 356 VDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD 414
                S + A+ +  N     +       +L   +    +           +  ++ S  
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281

Query: 415 GCTVASAAADETLRFWNV 432
           G  + +   D     W+ 
Sbjct: 282 GRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 7/179 (3%)

Query: 254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE 313
           R++     T RGH  ++  + W    + L S   D  L IWD         T  +H +  
Sbjct: 42  RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT------TNKVHAIPL 95

Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERE 373
            +S V   A+ P  + +   G                  ++    G           +  
Sbjct: 96  RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155

Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
            + +          W   +  +    +GHT  V+ ++ +PD     S A D + + W+V
Sbjct: 156 QIVTSSGDTTCAL-WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327
           QE   LK         +  +  L  I +          +    L  H + + A+ W    
Sbjct: 9   QEAEQLKNQIR-DARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-D 66

Query: 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ-VCALLWNKNERELLSSHGFTQNQLT 386
           S LL +     D  +  W+++T   ++++   S  V    +  +   +          + 
Sbjct: 67  SRLLVS--ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124

Query: 387 LWKYPSMVKM 396
             K       
Sbjct: 125 NLKTREGNVR 134

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.7 bits (244), Expect = 3e-23
 Identities = 61/388 (15%), Positives = 124/388 (31%), Gaps = 50/388 (12%)

Query: 85  ILAFKNKPPTP--VELIPEMHSSSASASSSVQQAKLN-KPRRHIPQSSERTLDAPDLVDD 141
             A  +KP  P  ++L  +    +    ++      N    R I     ++LD   +V  
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVV-- 65

Query: 142 YYLNLLDW-GSSNVLAIALGSTVYLWDAS----------------DGTTSELVTVDDENG 184
                + +      LA     T  ++  S                D       +    + 
Sbjct: 66  ---CCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGM 244
            + SV ++PDG+ +A G  +  +++WD    + +  L+G  +       + +      G 
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182

Query: 245 DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD-RSMASSNS 303
               +            T    +           G+ +A+G  D  + +WD  +      
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242

Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT----- 358
           +         H  +V ++ +     ++++   G  DR +K WN       +   T     
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVS---GSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 359 --------GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410
                      V ++   +N+  +LS  G     +  W   S   +  L GH + V+ +A
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 411 Q------SPDGCTVASAAADETLRFWNV 432
                   P+    A+ + D   R W  
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 3e-12
 Identities = 54/305 (17%), Positives = 105/305 (34%), Gaps = 47/305 (15%)

Query: 146 LLDWGSSNVLAIALGST---VYLWDASDGTT--SELVTVDDENGPVTSVNWAPDGRHIAI 200
           LLD  S +V       T     L++ +       EL    D    V  V ++ DG ++A 
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 201 GLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIV 260
           G  N   Q++  +    +  L     +       N                         
Sbjct: 80  G-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS----------------------- 115

Query: 261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
            +    +  +  + +S  G+ LA+G  D L+ IWD          +    +       + 
Sbjct: 116 -SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI---------ENRKIVMILQGHEQD 165

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           I    +  +      G GDR ++ W+  TG C  ++     V  +  +  + + +++ G 
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA-GS 224

Query: 381 TQNQLTLWKYPSMVKMAEL-------SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
               + +W   +   +  L       +GH   V  +  + DG +V S + D +++ WN+ 
Sbjct: 225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

Query: 434 GAPQV 438
            A   
Sbjct: 285 NANNK 289

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 3e-15
 Identities = 43/287 (14%), Positives = 84/287 (29%), Gaps = 18/287 (6%)

Query: 151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENG---PVTSVNWAPDGRHIAIG--LNNC 205
            +  +       V +WD S       V+  D       + S    PDG  + +G   +  
Sbjct: 62  PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121

Query: 206 QVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRG 265
            +    +   R    L     +        +  +         I         +V  ++G
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181

Query: 266 HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCP 325
           H      +  S  G +L +GG DN +  WD              +  + TS + ++ +CP
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-------GRQLQQHDFTSQIFSLGYCP 234

Query: 326 FQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
               L           +                   +    +    +  +S+     N L
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK---FAYCGKWFVSTG--KDNLL 289

Query: 386 TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             W+ P    + +    +S VL    S D   + + + D+    + V
Sbjct: 290 NAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 9e-12
 Identities = 39/274 (14%), Positives = 80/274 (29%), Gaps = 18/274 (6%)

Query: 165 LWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG- 223
           L        +  +   +    V +V  +   RH+  G   C V++WD +       +   
Sbjct: 33  LIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQL 91

Query: 224 ---GHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278
                 + + S     +   L  GG    +   D+      ++     +   C    + S
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAIS 150

Query: 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG 338
                     +  +I    + +   V Q+    +  +    +       +        G 
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-------GL 203

Query: 339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398
           D  ++ W+   G  L   D  SQ+ +L +              ++      + +     +
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQ 260

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           L  H S VL +  +  G    S   D  L  W  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.9 bits (182), Expect = 3e-15
 Identities = 42/268 (15%), Positives = 85/268 (31%), Gaps = 28/268 (10%)

Query: 185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILT 240
           P++   W  D   IAI  NN +V +++ + N+  Q+  L+  H  +V  + W  +++ + 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIV 67

Query: 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS-GGNDNLLHIWDRSMA 299
           T G D       ++ R                    A  ++  + G    ++ I      
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY--FE 125

Query: 300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG 359
             N      H  +   S V ++ W P    L A          + ++ +           
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF---KCRIFSAYIKEVEERPAPT 182

Query: 360 SQVCALLWNKNERELLSSHG-----------------FTQNQLTLWKYPSMVKMAELSGH 402
                + + +   E  SS G                    + + L      + +A L+  
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242

Query: 403 TSRVLFMAQSPDGCTVASAAADETLRFW 430
           T  +L +    +   VA+      + F 
Sbjct: 243 TLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 262 TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI 321
            +    + +    W+    Q+A   N++ +HI+++    S +    +H L+EH   V  +
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK----SGNKWVQVHELKEHNGQVTGV 57

Query: 322 AWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV-CALLWNKNERELLSSHGF 380
            W P  SN + T   G DR    W         ++        A        E   + G 
Sbjct: 58  DWAP-DSNRIVT--CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 114

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSR----VLFMAQSPDGCTVASAAADETLRFWNVFG 434
               +++  +                   VL +   P+   +A+ + D   R ++ + 
Sbjct: 115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.3 bits (139), Expect = 7e-10
 Identities = 36/296 (12%), Positives = 73/296 (24%), Gaps = 26/296 (8%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           IA+      V++++ S     ++  + + NG VT V+WAPD   I     +    +W   
Sbjct: 22  IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81

Query: 214 ANRQLRTLRGGHRSRVGSLAWNNHILTT------GGMDGLIINNDVRVRDHIVETYRGHN 267
                 TL     +R                     +  +                +   
Sbjct: 82  GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 141

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHR------------LEEHT 315
             V  L W  +   LA+G  D    I+   +                             
Sbjct: 142 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 201

Query: 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL 375
             V  + +    S +           +   +      + ++ + +     +    E  L+
Sbjct: 202 GWVHGVCFSANGSRVAWVSHDS---TVCLADADKKMAVATLASETLPLLAVTFITESSLV 258

Query: 376 SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
           ++         L+ Y S        G        +Q            D+      
Sbjct: 259 AAGH--DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 13/176 (7%)

Query: 178 TVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNH 237
                 G V  V ++ +G  +A   ++  V L D+     + TL       +        
Sbjct: 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 255

Query: 238 ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
            L   G D   +          + ++ G                             D+ 
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKL-SFGGRLD-------VPKQSSQRGLTARERFQNLDKK 307

Query: 298 MASSNSVTQWLHRLEEHTSAVKAIAWCP---FQSNLLATGGGGGDRCIKFWNTHTG 350
            +S  S          H ++V  I+       + +   T   G D  +  W+  + 
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDGGMSIWDVRSL 361

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.3 bits (178), Expect = 6e-15
 Identities = 38/311 (12%), Positives = 70/311 (22%), Gaps = 38/311 (12%)

Query: 154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNCQVQLWDS 212
           +LA A    + + D       +++T+ D          AP GR        +  +   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 213 TANRQLRTLRGGHRSRVGS-------------LAWNNHILTTGGMDGLIINNDVRVRDHI 259
                L  +                       LA     +        +    V + D  
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 260 ---VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR---------------SMASS 301
                      +++  L W+  G +L   G D  +   +                + A  
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183

Query: 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ 361
           + +  W         A                        +   +  TG           
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADP---TAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA 421
           V       N  +         N L  +       +  +         +  S DG TV   
Sbjct: 241 VFYFSTAVNPAKTR--AFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLG 297

Query: 422 AADETLRFWNV 432
            A   L  ++ 
Sbjct: 298 GALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA 199
            D +        +   A    + +  +D     + + V +        SVN + DG  + 
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVW 295

Query: 200 IGLNNCQVQLWDSTANRQLRTLR--GGHRSRVGSL 232
           +G     +  +D+    +   +   G     + S+
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.4 bits (178), Expect = 8e-15
 Identities = 30/334 (8%), Positives = 67/334 (20%), Gaps = 64/334 (19%)

Query: 155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL--NNCQVQLWDS 212
           +A       ++ D S     ++     E   +  V    D +   I        + ++D 
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLKV----PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 73

Query: 213 TANRQLRTLRGGHRSR----------------------------------------VGSL 232
              +  +                                                 +   
Sbjct: 74  RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133

Query: 233 AWNNHILTTGGMDGLIINNDVRVRDHIVETYR----------GHNQEVCGLKWSASGQQL 282
             +++         L            +  Y             N       + A  + L
Sbjct: 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193

Query: 283 ASGGNDNLLHIWD-RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG---GGG 338
                 +L    D   +  S  V      +     +       P      A         
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253

Query: 339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398
            R            +      S +   +    E          +  L  +     VK  +
Sbjct: 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD----VKTRK 309

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           ++   + +  +  S D  TV     D  +  + +
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 15/147 (10%), Positives = 42/147 (28%), Gaps = 12/147 (8%)

Query: 78  FNMNRTRILAFKNKPPTPVELIPEMHSSSASASSSVQQAKLNKPRRHIPQSSERTLDAPD 137
             +++  ++      P P +L+P    S  S +       + K    I            
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPR---SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP 271

Query: 138 LVDDYYLNLLDWGSSNVLAIALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPD 194
           L     +  +                  +  +D      +E+         +T +  + D
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSAD 325

Query: 195 GRHIAIGLNNCQVQLWDSTANRQLRTL 221
            + + +  ++ ++  +        RT+
Sbjct: 326 RKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 26/259 (10%), Positives = 65/259 (25%), Gaps = 15/259 (5%)

Query: 188 SVNWAP-DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW---NNHILTTGG 243
           + +++P DG  IA      Q  + D +    L+        R+  +            G 
Sbjct: 7   AEDFSPLDGDLIAFVSRG-QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGT 62

Query: 244 MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNS 303
            +G  +      R    E +  +   V  +    +G+      +   +   D        
Sbjct: 63  REGDFLGI-YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121

Query: 304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATG-GGGGDRCIKFWNTHTGACLNSVDTGSQV 362
           + +    +    +      +  +   L      G   + I  ++        +    S  
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181

Query: 363 CALLWNKNERELLS-----SHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
            A  ++ + + L               +  + +  + K   +             P   T
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241

Query: 418 VASAAADETLRFWNVFGAP 436
             +   D    +       
Sbjct: 242 SEAGEYDLNDMYKRSSPIN 260

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 3e-13
 Identities = 46/301 (15%), Positives = 100/301 (33%), Gaps = 55/301 (18%)

Query: 175 ELVTVDDENGPVTSVN-WAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLA 233
            L  +   +     V     D + I  GL +  +++WD       R L G H   V  L 
Sbjct: 4   SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQ 62

Query: 234 WNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI 293
           ++  ++ TG  D  +   DV   + +          +     +      +   +   + +
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS---IAV 119

Query: 294 WDRSMASSNSVTQWLHR----------------------------------LEEHTSAVK 319
           WD +  +  ++ + L                                    +       +
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179

Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG 379
            IA   ++  L+ +G    D  I+ W+   GACL  ++   ++   +   N+R +    G
Sbjct: 180 GIACLQYRDRLVVSGSS--DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV---SG 234

Query: 380 FTQNQLTLWKYPSMVK---------MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFW 430
               ++ +W   + +          +  L  H+ RV  +    D   + S++ D+T+  W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIW 292

Query: 431 N 431
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 15/143 (10%)

Query: 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT 220
            T+ +W+ S      + T++     +         R +  G ++  ++LWD      LR 
Sbjct: 158 RTIKVWNTSTC--EFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRV 213

Query: 221 LRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR--------VRDHIVETYRGHNQEVCG 272
           L G           N  I++ G  DG I   D+              + T   H+  V  
Sbjct: 214 LEGHEELVRCIRFDNKRIVS-GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272

Query: 273 LKWSASGQQLASGGNDNLLHIWD 295
           L++     Q+ S  +D+ + IWD
Sbjct: 273 LQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 149 WGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ 208
           +    V++ +  +T+ LWD   G          E           D + I  G  + +++
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 209 LWDSTANRQLRTLRG--------GHRSRVGSLAWNNHILTTGGMDGLI 248
           +WD  A    R   G         H  RV  L ++   + +   D  I
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTI 289

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 9e-13
 Identities = 53/339 (15%), Positives = 105/339 (30%), Gaps = 64/339 (18%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPD----- 194
           DD+ +  L +  + +++ +  +T+ +W A  G    L T+    G V S     +     
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISG 73

Query: 195 ---------------------------------GRHIAIGLNNCQVQLWDSTANRQLRTL 221
                                             + +  G  +  +++WD    + L  L
Sbjct: 74  STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 133

Query: 222 RGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ 281
            G   +          +++    D ++   D    +  + T +GH   V        G  
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGA-YDFMVKVWDPE-TETCLHTLQGHTNRVY--SLQFDGIH 189

Query: 282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRC 341
           + SG  D  + +WD            +H L  H S    +       N+L +G    D  
Sbjct: 190 VVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTSGMELKD---NILVSGNA--DST 238

Query: 342 IKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL-- 399
           +K W+  TG CL ++   ++  + +      +           + LW   +   +  L  
Sbjct: 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298

Query: 400 ---SGHTSRVLFMAQSPDGCTVASAAADET----LRFWN 431
               G    V  +  S      A  + + T    L   +
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-11
 Identities = 46/267 (17%), Positives = 92/267 (34%), Gaps = 23/267 (8%)

Query: 166 WDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGH 225
           W   +  + +   +   +  V +      G  I  G ++  +++W +   + LRTL  GH
Sbjct: 1   WRRGELKSPK--VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GH 56

Query: 226 RSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG 285
              V S    ++I+ +G  D       V   +     +  +             +++ SG
Sbjct: 57  TGGVWSSQMRDNIIISGSTD---RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 286 GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFW 345
             D  L +WD        V               A+    +    + +  G  D  +K W
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHV---------AAVRCVQYDGRRVVS--GAYDFMVKVW 162

Query: 346 NTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR 405
           +  T  CL+++  G          +   ++S  G     + +W   +   +  L+GH S 
Sbjct: 163 DPETETCLHTL-QGHTNRVYSLQFDGIHVVS--GSLDTSIRVWDVETGNCIHTLTGHQSL 219

Query: 406 VLFMAQSPDGCTVASAAADETLRFWNV 432
                       + S  AD T++ W++
Sbjct: 220 T--SGMELKDNILVSGNADSTVKIWDI 244

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 21/274 (7%), Positives = 63/274 (22%), Gaps = 23/274 (8%)

Query: 182 ENGP---VTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG--GHRSRVGSLAWNN 236
           E  P   ++ +   P    + I   +  + ++      +   L     ++  +    + +
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR 296
           +      +  +                   N E                   +   + + 
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 297 SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV 356
               +        +     +           +N      G  +  ++++        N  
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 357 DTGSQVCALLWNKNER------------------ELLSSHGFTQNQLTLWKYPSMVKMAE 398
              S +   + +                      E     G   N    + +       +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
            +     V  +  SP    + +A +D  +  WN+
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 2e-11
 Identities = 10/90 (11%), Positives = 23/90 (25%), Gaps = 3/90 (3%)

Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
           IV+  +     +  +K   S   L     D  L ++        +    L +   +   +
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHPL 59

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTH 348
               +       +  G   G+         
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 27/310 (8%), Positives = 85/310 (27%), Gaps = 26/310 (8%)

Query: 157 IALGS---TVYLWDASDGT-TSELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWD 211
           + + S   ++ ++         +L+       P+   N+  +    I +G    ++   D
Sbjct: 26  LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85

Query: 212 STANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
              +   + L     +                     +   +  R++        N    
Sbjct: 86  LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAI----AWCPFQ 327
             K       + +  +  ++ + +  +                 S +K      A  P +
Sbjct: 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE 205

Query: 328 SNLLATGGGGGDRCIKFWNTHTG--------------ACLNSVDTGSQVCALLWNKNERE 373
               A     G   ++F++                    L   +    V ++ ++   + 
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265

Query: 374 LLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVF 433
           L ++   +   ++ W   +  K+   +        +  +     +  A +D+T +     
Sbjct: 266 LYTAG--SDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTNAAI 322

Query: 434 GAPQVISKSA 443
                ++ S+
Sbjct: 323 DQTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 12/90 (13%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 181 DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILT 240
           +   PV S+ ++P  + +    ++  +  W+    ++++     +   V  +A +++IL 
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILC 308

Query: 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEV 270
               D     +  +    I +T   +   +
Sbjct: 309 LATSD-----DTFKTNAAIDQTIELNASSI 333

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.4 bits (157), Expect = 2e-12
 Identities = 32/286 (11%), Positives = 73/286 (25%), Gaps = 36/286 (12%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHI-LTT 241
           N  +T+++ + DG+ +        +  WD +     R     H + +  +   +   L T
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 242 GGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS 301
              D  +                 +      L  + S     +                +
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ 361
                +       ++  + +A     S +      G          H     +   + + 
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 362 VCALLWNKNERELLSSH---------------------------------GFTQNQLTLW 388
              +  +++ + +  S                                  G   N + +W
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 389 --KYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
               PS   +     H    +      +  T+ SA  D  ++FWNV
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 9e-07
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAV 318
           I +   GHN+ +  L  SA G+ L S   +  ++ WD      ++        + H + +
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD-----ISTGISNRVFPDVHATMI 58

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC 352
             I                 D  +K         
Sbjct: 59  TGIKTTSKGDL----FTVSWDDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             GH   +  ++ S DG T+ SA A+  +  W++
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 29/251 (11%), Positives = 67/251 (26%), Gaps = 35/251 (13%)

Query: 217 QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK 274
            +  +R GH   + +L+   +   L +   +G I + D+            H   + G+K
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 275 WSASGQQLASGGNDNLLHIWDR---------------------------------SMASS 301
            ++ G       +D+L  +                                         
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ 361
              +         +     +A    +  +   G        K            V     
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 362 VCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA 421
                 N     + +         ++     +      + HT++V  ++ SPD   +A+ 
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 422 AADETLRFWNV 432
           + D ++  WN+
Sbjct: 243 SLDNSVIVWNM 253

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 33/307 (10%), Positives = 77/307 (25%), Gaps = 41/307 (13%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRT 220
            +++ D +  T  +   + D+ GP  +   APD R   +   +   +   D    +    
Sbjct: 19  NLHVVDVASDTVYKSCVMPDKFGP-GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 77

Query: 221 LR-----GGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE---- 269
                  G     + S A +     +         +N+   V+   +E +   +      
Sbjct: 78  ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137

Query: 270 ---------VCGLKWSASGQQLASGGNDNLLHI-------------WDRSMASSNSVTQW 307
                    V  ++ +  G    +G +   + +             W+R   S+  V  +
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT--GSQVCAL 365
                             F+ +                +  TG                 
Sbjct: 198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257

Query: 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE 425
           L +  +   +       N+L  +       +   +        +A    G  +       
Sbjct: 258 LRSPKDPNQIYGVL---NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 426 TLRFWNV 432
            L  +N 
Sbjct: 314 DLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.2 bits (139), Expect = 7e-10
 Identities = 22/254 (8%), Positives = 57/254 (22%), Gaps = 32/254 (12%)

Query: 191 WAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGL 247
                 ++ +      + + D  ++   ++     +   G+                 G 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 248 IINNDVRVRD-----HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSN 302
           I   D+         ++        + +     S  G+++ +  N               
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH--YVVKP 121

Query: 303 SVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG----GDRCIKFWNTHTGACLNSVDT 358
              +     +   +        P Q  L+     G        I   +  TG    ++  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV 418
            +                      + L  W + S      +    +R        D    
Sbjct: 182 RNWNR-------------KGYSAPDVLYFWPHQSPRHEFSMLYTIARF-----KDDKQDP 223

Query: 419 ASAAADETLRFWNV 432
           A+A         ++
Sbjct: 224 ATADLLYGYLSVDL 237

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 10/90 (11%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA 199
            + Y   L           + + +  +D       +   +D        V +   G  + 
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGDKLY 307

Query: 200 IGLNNCQVQLWDSTANRQLRTLR--GGHRS 227
           +G     + +++     +++ ++  GG  S
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 16/169 (9%)

Query: 272 GLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL 331
           G    A  + +      N LH+ D    +S++V +                  P      
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVD---VASDTVYKSCV--MPDKFGPGTAMMAPDNRTAY 55

Query: 332 ATGGGGGDRCIKFWNTHTGACL-------NSVDTGSQVCALLWNKNERELLSSHGFTQNQ 384
                 GD  I   +  T              + G  + +   + + +E+ ++   TQ  
Sbjct: 56  VLNNHYGD--IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113

Query: 385 L--TLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN 431
               + K P +   +   G  ++ +     P    +  AA D +L    
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.6 bits (155), Expect = 5e-12
 Identities = 33/265 (12%), Positives = 75/265 (28%), Gaps = 14/265 (5%)

Query: 182 ENGPVTSVNWAPDGRHIAIGLNNC-QVQLWDSTANRQ--LRTLRGGHRSRVGSLAW---- 234
           +    T +++ P    IA        V+  D   ++   +    G   S V ++ +    
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 235 NNHILTTGGMDGLIINNDVRVRDHIVE-------TYRGHNQEVCGLKWSASGQQLASGGN 287
            +  L +G   G +I                    ++     +  + W   G++L   G 
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 288 DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT 347
                    S  S NS+ +     +   +     +       +   G     +   F  +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

Query: 348 HTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL 407
            +    +   +  +      +  E  +        +         +  + +        +
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 408 FMAQSPDGCTVASAAADETLRFWNV 432
           F     D    A+  AD T+R W+V
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDV 280

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 29/301 (9%), Positives = 90/301 (29%), Gaps = 22/301 (7%)

Query: 151 SSNVLAIALGSTVYL--WDASDGTTSELVTVDDENG-PVTSVNWAP--DGRHIAIGLNNC 205
           ++N +A   G + ++   D  D     +V         VT+V ++P    +++  G  + 
Sbjct: 28  TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87

Query: 206 QVQLWDSTANRQLRTLRG-------GHRSRVGSLAWN----NHILTTGGMDGLIINNDVR 254
           +V +W  T +++  ++              +  ++W+       +   G D   +     
Sbjct: 88  KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147

Query: 255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH 314
             + + E      +        +   +  + G+D  +  +       ++  +  H+    
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207

Query: 315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEREL 374
              V   +    +  +                       +  +        L   + ++ 
Sbjct: 208 VRDV-EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 266

Query: 375 LSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQS---PDGCTVASAAADETLRFWN 431
            +        + +W   +   + + +    ++              + S + D TL F+ 
Sbjct: 267 ATVGA--DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

Query: 432 V 432
           +
Sbjct: 325 L 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.5 bits (147), Expect = 4e-11
 Identities = 35/252 (13%), Positives = 66/252 (26%), Gaps = 5/252 (1%)

Query: 184 GPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTT 241
           G    +   P G  I        V      +          H  +        + +   +
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCAS 75

Query: 242 GGMDGLIINNDVRVRDHIVET-YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300
           G + G +   D     HI++T     +  V  + W +  +++A+ G             +
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS 360
             S      +     S     +      +              F    T           
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVAS 420
           +               +                    +   H+  V  +  SPDG  +AS
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 421 AAADETLRFWNV 432
           A+AD+T++ WNV
Sbjct: 256 ASADKTIKIWNV 267

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 7e-09
 Identities = 38/285 (13%), Positives = 81/285 (28%), Gaps = 9/285 (3%)

Query: 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD 211
            + +    G++VY       T +E+ T  + +   T    +P G + A G  +  V++WD
Sbjct: 29  GDKIQYCNGTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86

Query: 212 STANRQLRTLRG----GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHN 267
           +T    +         G    +   + +  I   G       +  +           G  
Sbjct: 87  TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146

Query: 268 QEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ 327
           + +  + +  S       G+D+               T   H    H+            
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206

Query: 328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTL 387
           +    T                   L +V     V  L W+ +  ++ S        + +
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS--ASADKTIKI 264

Query: 388 WKYPSMVKMAELSGHTS-RVLFMAQSPDGCTVASAAADETLRFWN 431
           W   ++     +   T      +        + S +A+  + F N
Sbjct: 265 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 343 KFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH 402
           +F  T     L     G     L       ++   +G     +      S+      + H
Sbjct: 2   EFSQTALFPSLPRTARG-TAVVLGNTPAGDKIQYCNG---TSVYTVPVGSLTDTEIYTEH 57

Query: 403 TSRVLFMAQSPDGCTVASAAADETLRFWN 431
           + +      SP G   AS      +R W+
Sbjct: 58  SHQTTVAKTSPSGYYCASGDVHGNVRIWD 86

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 30/317 (9%), Positives = 70/317 (22%), Gaps = 41/317 (12%)

Query: 152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI----------G 201
           ++    A  +  ++ D   G    ++      G + +   A DG  IA           G
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDG----GFLPNPVVADDGSFIAHASTVFSRIARG 74

Query: 202 LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINND--------- 252
                V+++D         +      R     +      T     L+             
Sbjct: 75  ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134

Query: 253 -------VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305
                   R+ D     +               G                 +        
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL--------NSVD 357
             ++       A + +               G  + +      T A              
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254

Query: 358 TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT 417
              +    ++   ++     H      + +    +  ++A+       +  +  S D   
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 313

Query: 418 --VASAAADETLRFWNV 432
              A +  D+TL   + 
Sbjct: 314 LLYALSTGDKTLYIHDA 330

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 38/305 (12%), Positives = 80/305 (26%), Gaps = 35/305 (11%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDG---- 195
           D  ++       S +        V ++D           ++  + P   V   P      
Sbjct: 57  DGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLT 114

Query: 196 -----RHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIIN 250
                           V + D       R L       +   A +   +         + 
Sbjct: 115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVA 174

Query: 251 NDVRVRDHIVET---YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW 307
                   I  T   +      +    +S    +L        +H  D S        ++
Sbjct: 175 FGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD----AKF 230

Query: 308 LHRLEEHTSAVKAIAWCPFQSNLLATGGGG-----------------GDRCIKFWNTHTG 350
           L  +E  T A +A  W P     +A                        R +   +  TG
Sbjct: 231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 290

Query: 351 ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMA 410
             L   + G ++ ++  +++E+ LL +       L +    S  ++  ++        + 
Sbjct: 291 ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350

Query: 411 QSPDG 415
            +  G
Sbjct: 351 TADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 30/286 (10%), Positives = 59/286 (20%), Gaps = 29/286 (10%)

Query: 183 NGPVTSVNWAPDGRHIAI-----GLNNCQVQLWDSTANRQLRTLRGGHRSRV-----GSL 232
           + P      APD R + +          Q  + D  A R +  + GG          GS 
Sbjct: 1   DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSF 60

Query: 233 AW----NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE------VCGLKWSASGQQL 282
                     +  G     +   D        +                    +  G+ L
Sbjct: 61  IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120

Query: 283 ASGGNDNLLHIWDRSMASSNSVTQWL---HRLEEHTSAVKAIAWCPFQSNLLATGGGGGD 339
                     +    +                   T+       C   S      G  G 
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG- 179

Query: 340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL 399
              +  +T      +            +++    L+      +             +  +
Sbjct: 180 -TPEITHTEVFHPEDEFLINHPA----YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234

Query: 400 SGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK 445
              T         P G    +        +  V    +   K+A +
Sbjct: 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 40/385 (10%), Positives = 100/385 (25%), Gaps = 76/385 (19%)

Query: 106 SASASSSVQ--QAKLNKPRRHIPQSSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGS-- 161
           S S    ++    KL        +S    +    L     L  ++  +  +  +A  S  
Sbjct: 29  SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88

Query: 162 -TVYLWDASDGT--------TSELVTVDDENGPVTSVNWAPDG-----RHIAIGLNNCQV 207
             +  +  +             +L+  D +     ++ W           +         
Sbjct: 89  GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 148

Query: 208 QLWDSTANRQLRTLR-----------------GGHRSRVGSLAWN-NHILTTGGMDGLI- 248
            +W                                     S+  +   ++ TG  +G + 
Sbjct: 149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ 208

Query: 249 ----INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR-------- 296
                            +   ++  +  +K+S  G  LA   + N               
Sbjct: 209 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 268

Query: 297 --SMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN 354
             S++     +Q       H+S V ++++      L      G D  ++FW+  T   + 
Sbjct: 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC---SAGWDGKLRFWDVKTKERIT 325

Query: 355 SVDT-----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM 409
           +++        +   L  +++   L     F      +       +    +         
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-----VKFLKKGWRSGMGADLNE----- 375

Query: 410 AQSPDGCTVASAAADETLRFWNVFG 434
                  ++     D ++R++   G
Sbjct: 376 -------SLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 7e-08
 Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 43/210 (20%)

Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLE------E 313
               + H+ ++  +  SA      S   D  L +WD  +  + +     +          
Sbjct: 7   ANAGKAHDADIFSV--SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 314 HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC-----------LNSVDTGSQV 362
           H   ++AI    F+  L+AT        + F+                  L+S       
Sbjct: 65  HVDVLQAIERDAFELCLVAT--TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 363 CALLWNKNEREL------------------LSSHGFTQNQLTLWKYPSMV---KMAELSG 401
            AL W  +   L                          N LTL   P++     +     
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 402 HTSRVLFMAQSPDGCTVASAAADETLRFWN 431
            +     +  S  G  +A+   + T++   
Sbjct: 183 PSQFATSVDISERG-LIATGFNNGTVQISE 211

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 10/216 (4%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILT 240
              V +     +  ++  G ++  ++++DS   + L  L  GH   V +L +     +++
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVS 69

Query: 241 TGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS 300
                 + + +  +     V            +    + + + +G  DN LH+W     S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS 360
           S      +    E                 +    G                  S D   
Sbjct: 130 S------VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM 396
            V  +   K    L        + +   +    +  
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 219

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 7e-08
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 9/152 (5%)

Query: 217 QLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS 276
           Q  TLRG   S +  L + ++ + TG  D +I   D   +  ++    GH+  V  LK++
Sbjct: 4   QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL-QLSGHDGGVWALKYA 62

Query: 277 ASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG 336
             G  L SG  D  + +WD               + E  ++           N+     G
Sbjct: 63  -HGGILVSGSTDRTVRVWDI-------KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114

Query: 337 GGDRCIKFWNTHTGACLNSVDTGSQVCALLWN 368
             D  +  W     + +           +   
Sbjct: 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 146

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 6/144 (4%)

Query: 309 HRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLW 367
             L  H ++V  I    F+ N + TG    D+ I+ +++     L  +      V AL +
Sbjct: 6   TTLRGHMTSV--ITCLQFEDNYVITGAD--DKMIRVYDSINKKFLLQLSGHDGGVWALKY 61

Query: 368 NKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETL 427
                 L+S       ++   K      + E    T R L + +  +   + + + D TL
Sbjct: 62  AHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 428 RFWNVFGAPQVISKSAPKPNREPF 451
             W +     V            F
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVF 144

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 25/292 (8%), Positives = 77/292 (26%), Gaps = 23/292 (7%)

Query: 157 IALGS---TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDST 213
           +  G+    + ++D+ +     L+ +   +G V ++ +A  G  ++   +          
Sbjct: 26  VITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 83

Query: 214 ANRQLRTLRG--GHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVC 271
                         R        N   + TG  D  +    +     + +    H+  + 
Sbjct: 84  GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143

Query: 272 GLKWSASGQQLASGGN-----------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKA 320
                 +   +                 N++                +  L   +     
Sbjct: 144 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 203

Query: 321 IAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
           I    +            D  I+ W+   G  + ++   + +  LL   ++  + ++   
Sbjct: 204 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADG 263

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
           +        Y           H + +  +        +  + ++     +N+
Sbjct: 264 SIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDNILVSGSENQFNIYNL 310

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 5/68 (7%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTT 241
           +  ++++       +I +  +  Q  +++  + + +         ++ S+ +    ++  
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA 340

Query: 242 GGMDGLII 249
              DG   
Sbjct: 341 VEKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 27/253 (10%), Positives = 67/253 (26%), Gaps = 18/253 (7%)

Query: 140 DDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA 199
            D  L++      + +        Y         +            +    +  G  + 
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175

Query: 200 IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHI 259
            G  +  + +WD    + L  L G            + I        +  + D  +R   
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDR------IYSTIYDHERKRCISASMDTTIRIWD 229

Query: 260 VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVK 319
           +E                  +      +  L+               +  +   H + + 
Sbjct: 230 LENGELMYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 320 AIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG--SQVCALLWNKNERELLSS 377
           AI       N+L +G    +     +N  +G  +++       Q+ ++ +    + L+++
Sbjct: 286 AITTFYVSDNILVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVAA 340

Query: 378 HGFTQNQLTLWKY 390
                 Q  L   
Sbjct: 341 VE-KDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 9/108 (8%), Positives = 35/108 (32%), Gaps = 2/108 (1%)

Query: 190 NWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLII 249
                 + +     +  ++ WD+    +  +    + S + +   +++IL +G  +    
Sbjct: 248 LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFN 306

Query: 250 NNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS 297
             ++R    +         ++  + +      +A+   D    +    
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEILD 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 30/306 (9%), Positives = 66/306 (21%), Gaps = 41/306 (13%)

Query: 161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI----------GLNNCQVQLW 210
           +  ++  A  G T         +  V        G   A+          G     V+++
Sbjct: 46  TENWVSCAGCGVTLGHSLGAFLSLAV----AGHSGSDFALASTSFARSAKGKRTDYVEVF 101

Query: 211 DSTANRQLRTLRGGHRSRVGSLAW---------NNHILTTGGMDGLIINNDVRVR--DHI 259
           D      +  +      R               +  +L             V     D +
Sbjct: 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQL 161

Query: 260 VETYRG----HNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHT 315
            ++                 S      AS                + +        + + 
Sbjct: 162 TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY 221

Query: 316 SAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL 375
             +  + W    S L       G       + +           +    +   KN   ++
Sbjct: 222 PGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279

Query: 376 -------SSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT--VASAAADET 426
                   S        +            +S        +  + DG +   A++A  E 
Sbjct: 280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEV 338

Query: 427 LRFWNV 432
           L  ++ 
Sbjct: 339 LDIYDA 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 17/218 (7%), Positives = 43/218 (19%), Gaps = 22/218 (10%)

Query: 160 GSTVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTA 214
            S          +  +L               T    +      A  L           A
Sbjct: 145 SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204

Query: 215 NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLK 274
                T      S+     +   ++       L  +        +     G+        
Sbjct: 205 QC---TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA-GATMKAAIDGNESGRKADN 260

Query: 275 WSASGQQLASGGNDNLLHIW----DRSMASSNSVTQWLHRLE--------EHTSAVKAIA 322
           + ++G Q+ +   +    +           + +                  +     AI 
Sbjct: 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320

Query: 323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS 360
                          G   +  ++  +    +SV+   
Sbjct: 321 AAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.6 bits (116), Expect = 3e-07
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290
                  ++ TG +D  I    V+    I++    H   V  L W      L S G D  
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADAC 280

Query: 291 LHIWD 295
           +  W+
Sbjct: 281 IKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 31/297 (10%), Positives = 72/297 (24%), Gaps = 46/297 (15%)

Query: 171 GTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVG 230
           G    L T+   N  +T++   P    +  G  + ++  W         ++   H + + 
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWS------SSSMHQDHSNLIV 50

Query: 231 SLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNL 290
           SL  +     +       +  +   +       +  +    G     +            
Sbjct: 51  SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 291 LHIWDRSMASSNSVTQW---------------------------LHRLEEHTSAVKAIAW 323
             I      +S                                         +    I+ 
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 324 CPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH----- 378
            P ++ + A    G        +        +  T            +            
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 379 --GFTQNQLTLWKYPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV 432
             G     + ++     +K+ + L+ H   V  +       T+ S+ AD  ++ WNV
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 32/275 (11%), Positives = 75/275 (27%), Gaps = 14/275 (5%)

Query: 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQL 218
              + + D +    +  + V            +PDG  + +   ++  V + D TA   +
Sbjct: 11  SDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIID-TATNNV 66

Query: 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278
                   S  G     +              + +    + V       +   GL  S  
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126

Query: 279 GQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG 338
           G++L    N +       ++         ++ +    S              +A      
Sbjct: 127 GKKLYVTNNGDKTVSVINTVTK-----AVINTVSVGRSPKGIAVTPDGTKVYVAN---FD 178

Query: 339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE 398
              I   +T T + +++V   +    +  N    +   ++                K+  
Sbjct: 179 SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238

Query: 399 LSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNV 432
                     +A +PDG  V  + +   T+   + 
Sbjct: 239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 30/269 (11%), Positives = 77/269 (28%), Gaps = 25/269 (9%)

Query: 147 LDWGSSNVLAIALGSTVYLWDASDGTTSELV---TVDDENGPVTSVNWAPDGRHIAIGLN 203
           L W S +       + + +++A  G +S  +   T D+    +   + +PDG+ I +  N
Sbjct: 22  LRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN 81

Query: 204 ---------NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR 254
                         ++D    + +   R  + ++  + +   H L     + + +  +  
Sbjct: 82  YVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPN 141

Query: 255 VRDHIVETYRGHNQEVCGL---------KWSASGQQLASGGNDNLLHIWDRSMASSNSVT 305
           +  + +      +    G+           + S    +  G       ++ +       +
Sbjct: 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS 201

Query: 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGG---GGDRCIKFWNTHTGACLNSVDTGSQV 362
            +     ++   V+         N               +    +       S+  G   
Sbjct: 202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY 261

Query: 363 CA-LLWNKNERELLSSHGFTQNQLTLWKY 390
              + W   ER  L      QN   +   
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDIC 290

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 7e-05
 Identities = 30/318 (9%), Positives = 77/318 (24%), Gaps = 34/318 (10%)

Query: 146 LLDWGSSNVLAIAL--GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN 203
           L D    N+ ++ L     + L D       +++        V     +  GR++ +   
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGR 81

Query: 204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-------NHILTTGGMDGLIINNDVRVR 256
           + ++ + D  A    +           S+  +        + +            D    
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141

Query: 257 DHI-VETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDR-----SMASSNSVTQWLHR 310
           +   + + RG   +            + +        +  +      + +   +      
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201

Query: 311 LEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQV---CALLW 367
                  +    W       +          +        + L  V            + 
Sbjct: 202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261

Query: 368 NKNERELLSSHGFTQNQLTLWKYPSMVKM------AELSGHTSRVLFMAQSPDGCTVA-- 419
            K      +SH    +   +   P           AEL G     LF+   P    +   
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 321

Query: 420 -----SAAADETLRFWNV 432
                 A   +++  +++
Sbjct: 322 TTFNPDARISQSVAVFDL 339

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 27/292 (9%), Positives = 77/292 (26%), Gaps = 36/292 (12%)

Query: 160 GSTVYLWDASDGTTSELVTVDDENGP---VTSVNWAPDGRHIAIGLN-NCQVQLWDSTAN 215
            + + + D      +++  +          +S     + R+   G     Q  + D    
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141

Query: 216 RQLRTLR-------------GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET 262
              + +                  + + +   +   +      G ++  + +  D++  T
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201

Query: 263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIW----DRSMASSNSVTQWLHRLEEHTSAV 318
             G    +    W +S +   +  N++         DR +++   V +  H         
Sbjct: 202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261

Query: 319 KAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNEREL--- 374
                    S+L            K    +    +  +   G     +  +     L   
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 321

Query: 375 --LSSHGFTQNQLTLW------KYPSMVKMAELSGHT---SRVLFMAQSPDG 415
              +        + ++          ++ +AE +       RV+    +  G
Sbjct: 322 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 29/306 (9%), Positives = 72/306 (23%), Gaps = 29/306 (9%)

Query: 144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN 203
           +N  D  +   + +     + L D S  T      +D           +  GR++ +   
Sbjct: 25  MNDWDLENLFSVTLRDAGQIALIDGS--TYEIKTVLDTGYAVH-ISRLSASGRYLFVIGR 81

Query: 204 NCQVQLWDSTANRQLRTLR----GGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVR 256
           + +V + D                  RS   S        + +         +  D    
Sbjct: 82  DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141

Query: 257 DHIVETYR----------GHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVT 305
           +                      V  +  S    +   +      + + D +  ++   T
Sbjct: 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 201

Query: 306 QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCAL 365
           +           +            +          +   +T  G  +   DTG Q    
Sbjct: 202 EI-----SAERFLHDGGLDGSHRYFITAANARNK--LVVIDTKEGKLVAIEDTGGQTPHP 254

Query: 366 LWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE-LSGHTSRVLFMAQSPDGCTVASAAAD 424
               N         +  + +       +    E    +  ++L    +  G ++      
Sbjct: 255 GRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP 314

Query: 425 ETLRFW 430
            +   +
Sbjct: 315 NSQYLY 320

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 43/313 (13%), Positives = 79/313 (25%), Gaps = 57/313 (18%)

Query: 160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI------------GLNNCQV 207
                + D                       + P+ R  AI                 ++
Sbjct: 130 PPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187

Query: 208 QLWDSTANRQLRTLRGGHRSRVGSLAWN---NHILTTGGMDGLIINNDVRVRDHIVETYR 264
            L D T    L+T        +     +    + +T       ++  D +     +    
Sbjct: 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK--LVAIE 245

Query: 265 GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWC 324
               +       A+      G      H+ D S      V       E H       AW 
Sbjct: 246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS------VALIGTDPEGH----PDNAWK 295

Query: 325 PFQSNLLATGGGGGDRCIKFW----NTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF 380
              S       GGG   IK        +  A LN     S   A+ ++            
Sbjct: 296 ILDS---FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTG----DG 347

Query: 381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA-------------DETL 427
           +  +        + + A ++    RV+    + DG  V  +               D+TL
Sbjct: 348 SDPEFKTL---PIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 404

Query: 428 RFWNVFGAPQVIS 440
              +V    ++++
Sbjct: 405 ELKHVIKDERLVT 417

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 23/291 (7%), Positives = 77/291 (26%), Gaps = 20/291 (6%)

Query: 162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI-AIGLNNCQVQLWDSTANRQLRT 220
            +++W+ +      L  V D  G V  +  +PD R++        +V  +    +    T
Sbjct: 15  QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT 74

Query: 221 LRGGHR--SRVGSLAWNN-----HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGL 273
                     +  ++ ++      + +    +  +   +  +   +V+   G +      
Sbjct: 75  FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN 134

Query: 274 KWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT 333
               +          + + ++  S                  +  + + + P +      
Sbjct: 135 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV 194

Query: 334 GGGGGDRCIKFWNTHTG--------ACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQL 385
                   +       G          +    + ++  A +    +   L +   T + +
Sbjct: 195 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 254

Query: 386 TLWKYPSMVKMAELSGHTSRVLF---MAQSPDGCTVASAAADE-TLRFWNV 432
           T++       +    G                G  + +A      +  + +
Sbjct: 255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 5/149 (3%)

Query: 160 GSTVYLWDASDGTTSELVTVDD-ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL 218
             TV LW+    T++ L+     E+        +PD  +     N   +     T    L
Sbjct: 36  KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95

Query: 219 RTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSAS 278
             +  G    +     +N  L   G  G      + + ++ +       ++   +  +  
Sbjct: 96  SKIPHGDPQSLDPPEVSNAKLQYAGW-GPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGK 154

Query: 279 GQQLASGGNDNLLHIWDRSMASSNSVTQW 307
              + +G +D    +++  +  ++    W
Sbjct: 155 EGVIYNGLSD---WLYEEEILKTHIAHWW 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.27
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.12
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.89
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.84
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.67
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.61
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.55
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.76
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.71
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.67
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.66
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.6
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.55
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.49
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.47
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.45
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.31
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.16
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.98
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.72
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.39
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.97
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.51
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.46
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.09
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.67
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.19
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.84
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.63
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.85
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.3
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.91

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-39  Score=306.06  Aligned_cols=278  Identities=20%  Similarity=0.278  Sum_probs=239.2

Q ss_pred             CccccceeeccC-CCeEEEEcCCEEEEEECCCCCe---eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          140 DDYYLNLLDWGS-SNVLAIALGSTVYLWDASDGTT---SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       140 ~d~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ....+.+++|++ +.+++.+.||.|+|||+.++..   .......+|.+.|.+++|+|+|++|++|+.||.|++||+...
T Consensus        50 H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~  129 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP  129 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc
Confidence            344688999988 5566667799999999986532   234445678999999999999999999999999999998744


Q ss_pred             --eeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679          216 --RQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       216 --~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                        +....+.. |...+.+++|+  +.++++++.|+.|.+||+.+... .....+|...|.+++|++++..+++|+.|+.|
T Consensus       130 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v  207 (337)
T d1gxra_         130 TPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNTV  207 (337)
T ss_dssp             --EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence              45556665 89999999994  68999999999999999987654 67778899999999999999999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNE  371 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~  371 (458)
                      ++||++++..      +..+ .|...|.+++|+|++. ++++++  .|+.|++||+++++......+...|.+++|+|++
T Consensus       208 ~i~d~~~~~~------~~~~-~~~~~i~~l~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g  277 (337)
T d1gxra_         208 RSWDLREGRQ------LQQH-DFTSQIFSLGYCPTGE-WLAVGM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG  277 (337)
T ss_dssp             EEEETTTTEE------EEEE-ECSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccee------eccc-ccccceEEEEEccccc-ccceec--cccccccccccccccccccccccccceEEECCCC
Confidence            9999987754      4443 5788999999999755 455555  8999999999999988888888899999999999


Q ss_pred             CeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ++|++  |..||.|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|+|||+
T Consensus       278 ~~l~s--~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         278 KWFVS--TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEE--EETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CEEEE--EeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99988  4489999999999999988765 7889999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-38  Score=293.28  Aligned_cols=276  Identities=24%  Similarity=0.418  Sum_probs=249.7

Q ss_pred             cccceeeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeE
Q 012679          142 YYLNLLDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       142 ~~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~  219 (458)
                      ..+++++|++  +.+++++.||+|+|||+.+++.  +..+.+|...|.+++|+|++.+++++..++.+.+|+....+...
T Consensus        18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE--EEEEeCCCCcEEEEeeeccccccccccccccccccccccccccc
Confidence            3688999987  3477888999999999999887  67788999999999999999999999999999999999888887


Q ss_pred             EecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCC
Q 012679          220 TLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRS  297 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~  297 (458)
                      .+.. |...+.++.|  ++..+++++.|+.+.+||++++.. ...+.+|...+.+++|++++++|++++.|+.|++|++.
T Consensus        96 ~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1          96 TMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             CCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccc-ccccceeeeccCCCceEEeeccCcceeEeeccccee-eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence            7776 9999999999  478999999999999999998764 67888999999999999999999999999999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCC-------------------cEEEEeCCCCCCeEEEEECCCCCeeEEEeC
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQS-------------------NLLATGGGGGDRCIKFWNTHTGACLNSVDT  358 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-------------------~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~  358 (458)
                      ....      ...+..|...+.+++|+|+..                   .++++++  .|+.|++||+.+++++..+..
T Consensus       174 ~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~  245 (317)
T d1vyhc1         174 TKEC------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVG  245 (317)
T ss_dssp             TCCE------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred             ccee------eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeC
Confidence            8766      778888999999999988642                   3566665  899999999999999988865


Q ss_pred             -CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          359 -GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       359 -~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                       ...|.+++|+|++++|++  |..||.|+|||+.+++.+.++.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       246 ~~~~v~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         246 HDNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSCEEEEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEE--EECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence             568999999999999998  45899999999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-38  Score=296.23  Aligned_cols=271  Identities=18%  Similarity=0.277  Sum_probs=227.2

Q ss_pred             eeeccC-CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee--EEec
Q 012679          146 LLDWGS-SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL--RTLR  222 (458)
Q Consensus       146 ~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~--~~~~  222 (458)
                      ++++++ ++.++.+.++.|++||+.+++.  ...+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++..  ..+.
T Consensus        22 ~~a~~~~g~~l~~~~~~~v~i~~~~~~~~--~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~   99 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTD--TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP   99 (311)
T ss_dssp             CCEECTTSSEEEEEETTEEEEEETTCSSC--CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCEEEEEECCCCce--eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc
Confidence            345554 5566777889999999998876  4556789999999999999999999999999999999887654  3455


Q ss_pred             CCCcccEEEEEeC--CCeEEEEeC--CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE-EEEEECCCcEEEEeCC
Q 012679          223 GGHRSRVGSLAWN--NHILTTGGM--DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ-LASGGNDNLLHIWDRS  297 (458)
Q Consensus       223 ~~~~~~v~~l~~~--~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~sg~~dg~i~iwd~~  297 (458)
                      . |...|.+++|+  +.+|++++.  +..+.+|++++... ...+.+|...|.+++|+|++++ |++|+.|+.|++||++
T Consensus       100 ~-~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1         100 V-FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             C-SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             c-ccCccccccccccccccccccccccccccccccccccc-cccccccccccccccccccceeeeccccccccccccccc
Confidence            5 99999999995  678888875  45699999987764 5678899999999999999885 7889999999999998


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------CCCCeEEEEEcC
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCALLWNK  369 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------~~~~v~~~~~s~  369 (458)
                      +...      ...+..|...|.+++|+|++. ++++++  .|+.|++||..++..+..+.        +...|.+++|+|
T Consensus       178 ~~~~------~~~~~~~~~~i~~v~~~p~~~-~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         178 PFKF------KSTFGEHTKFVHSVRYNPDGS-LFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             TBEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             cccc------ccccccccccccccccCcccc-cccccc--ccccccccccccccccccccccccccccccccccccccCC
Confidence            7765      777889999999999999765 555555  89999999999998887764        245799999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC---cEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS---RVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~---~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      ++++|++  |+.||.|+|||+.+++.+.++..|..   .+.++.|  ++..|++++.||.|++||..
T Consensus       249 ~~~~l~t--gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         249 DGTKIAS--ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TSSEEEE--EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             CCCEEEE--EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            9999998  55899999999999999999987653   3455555  55679999999999999963

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-37  Score=295.35  Aligned_cols=285  Identities=20%  Similarity=0.307  Sum_probs=226.8

Q ss_pred             cccceeeccC-CCeEEEEcCCEEEEEECCCCCeeeEE----------------EecCCCCCEEEEEEcCCCCEEEEEecC
Q 012679          142 YYLNLLDWGS-SNVLAIALGSTVYLWDASDGTTSELV----------------TVDDENGPVTSVNWAPDGRHIAIGLNN  204 (458)
Q Consensus       142 ~~~~~~~~~~-~~~la~~~d~~v~iwd~~~~~~~~~~----------------~~~~h~~~V~~v~~s~~g~~la~g~~d  204 (458)
                      -.+++++|++ +.+++.|.|+.|+|||+.+++.....                ....|...|++++|+|+|++|++|+.|
T Consensus        63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  142 (388)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence            3689999998 46778888999999999988763221                123567779999999999999999999


Q ss_pred             CeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE
Q 012679          205 CQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL  282 (458)
Q Consensus       205 g~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  282 (458)
                      |.|++||...++.+..+.+ |...|.++.|+  +..+++|+.++.|++||.++... ......+...+....+.+++++|
T Consensus       143 g~v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l  220 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIEDGVTTVAVSPGDGKYI  220 (388)
T ss_dssp             SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEECSTTCCEE
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccceeeeeeecccccc-ccccccccccccccccCCCCCeE
Confidence            9999999999999998887 99999999994  67999999999999999987654 44444555555544455589999


Q ss_pred             EEEECCCcEEEEeCCCCCCCCcc-eeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-------
Q 012679          283 ASGGNDNLLHIWDRSMASSNSVT-QWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-------  354 (458)
Q Consensus       283 ~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-------  354 (458)
                      ++|+.||.|++||.......... .......+|...|.+++|+|++. ++++++  .|+.|++||+.++....       
T Consensus       221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~  297 (388)
T d1erja_         221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWNLQNANNKSDSKTPNS  297 (388)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEEC--------------
T ss_pred             EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEE--CCCcEEEEeccCCccccccccccc
Confidence            99999999999999877652111 11223456889999999999765 555555  89999999998765332       


Q ss_pred             ------EEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEE------cCCCCEEEEEe
Q 012679          355 ------SVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQ------SPDGCTVASAA  422 (458)
Q Consensus       355 ------~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~------spdg~~l~s~s  422 (458)
                            ...+...|.+++|+|++++|++  |..||.|++||+.+++++.++.+|.+.|+++++      +|++.+|+||+
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             cceeeecccccceEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence                  1234567999999999999988  558999999999999999999999999999985      57899999999


Q ss_pred             CCCcEEEEecC
Q 012679          423 ADETLRFWNVF  433 (458)
Q Consensus       423 ~Dg~i~iW~~~  433 (458)
                      .||+|+||++.
T Consensus       376 ~Dg~I~iW~~~  386 (388)
T d1erja_         376 GDCKARIWKYK  386 (388)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCEEEEEeee
Confidence            99999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-35  Score=277.14  Aligned_cols=284  Identities=21%  Similarity=0.382  Sum_probs=242.2

Q ss_pred             CceeeeCCCCCCccccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCe
Q 012679          129 SERTLDAPDLVDDYYLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQ  206 (458)
Q Consensus       129 ~~~~l~~~~~~~d~~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~  206 (458)
                      +.++|..+    ...+++++|+++  .+++++.||.|+|||+.+++.  +..+..|...|++++|+|+++++++|+.|+.
T Consensus        47 ~~~tL~GH----~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          47 TRRTLRGH----LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK--VHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EEEEECCC----SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--EEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eeEEECCC----CCCEEEEEECCCCCEEEEEECCCceeeeeccccee--EEEEecccccEEeeEeeccceeeeeecccce
Confidence            34555532    235888999873  488888999999999999876  6778889999999999999999999999999


Q ss_pred             EEEEeCCCce----eeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE
Q 012679          207 VQLWDSTANR----QLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       207 v~iwd~~~~~----~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~  281 (458)
                      +.+|+.....    ....+.. |........+ .+..+..+..+.....+....... ......+...+....+.+.+.+
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  198 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTRL  198 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECC-CSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSE
T ss_pred             eecccccccccccccceeccc-ccccccccccccccccccccccccccccccccccc-cccccccceeEeeeccccccce
Confidence            9999976543    3444554 7776666666 478888899999999998876554 4556677888999999999999


Q ss_pred             EEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC---
Q 012679          282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT---  358 (458)
Q Consensus       282 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~---  358 (458)
                      +++|+.|+.|++||++.+..      +..+.+|...|.+++|+|++. ++++++  .|+.|++||+.....+..+..   
T Consensus       199 ~~~~~~d~~v~i~d~~~~~~------~~~~~~h~~~i~~v~~~p~~~-~l~s~s--~d~~i~~~~~~~~~~~~~~~~~~~  269 (340)
T d1tbga_         199 FVSGACDASAKLWDVREGMC------RQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRADQELMTYSHDNI  269 (340)
T ss_dssp             EEEEETTTEEEEEETTTTEE------EEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEEEECCTTC
T ss_pred             eEEeecCceEEEEECCCCcE------EEEEeCCCCCeEEEEECCCCC-EEEEEe--CCCeEEEEeecccccccccccccc
Confidence            99999999999999988765      788889999999999999754 556665  899999999999988877743   


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          359 GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       359 ~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      ...+.+++|+|++++|++  |..||.|++||+.+++.+.++.+|.+.|++++|+|++.+|+||+.||+|+|||
T Consensus       270 ~~~i~~~~~s~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         270 ICGITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSCEEEEEECSSSCEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCceEEEEECCCCCEEEE--EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            456999999999999998  55899999999999999999999999999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-36  Score=290.20  Aligned_cols=290  Identities=15%  Similarity=0.218  Sum_probs=230.3

Q ss_pred             ccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          143 YLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       143 ~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      .+++++|+++  .+++++.++.|+|||..+++......+.+|.++|++++|+|++++|++|+.|+.|+|||+.++.....
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            3788999883  35566678999999999888777888999999999999999999999999999999999987765443


Q ss_pred             --ecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEE
Q 012679          221 --LRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHI  293 (458)
Q Consensus       221 --~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~i  293 (458)
                        +.. |...|.+++|  +++.|++|+.|+.|++|++.....   .......|...|.+++|+|++++|++|+.|+.|++
T Consensus        89 ~~~~~-~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v  167 (371)
T d1k8kc_          89 LVILR-INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  167 (371)
T ss_dssp             EECCC-CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ccccc-ccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEE
Confidence              344 8899999999  478999999999999999876553   23445678999999999999999999999999999


Q ss_pred             EeCCCCCCCC------------cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CC
Q 012679          294 WDRSMASSNS------------VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GS  360 (458)
Q Consensus       294 wd~~~~~~~~------------~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~  360 (458)
                      ||........            ....+.....|...|.+++|+|++. .+++++  .|+.|++||+.++..+..+.. ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS--HDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE--TTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccc--cCCcceEEeeecccceeeeecccc
Confidence            9987643211            1123556678999999999999765 556665  899999999999999988876 45


Q ss_pred             CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC--ceeeE---------------------------------------EE
Q 012679          361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPS--MVKMA---------------------------------------EL  399 (458)
Q Consensus       361 ~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~--~~~~~---------------------------------------~~  399 (458)
                      +|.+++|+|+++.+++  | .|+.+.+|.+..  .....                                       ..
T Consensus       245 ~v~s~~fs~d~~~la~--g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         245 PLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             CEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             cceeeeecCCCCEEEE--E-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            7999999999987765  4 366666655422  11100                                       00


Q ss_pred             eCCCCcEEEEEEcCCC----CEEEEEeCCCcEEEEecCCCCccc
Q 012679          400 SGHTSRVLFMAQSPDG----CTVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       400 ~~h~~~V~~l~~spdg----~~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      ..|.+.|+++++.+.+    ..|+|+|.||.|+|||+...+...
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~  365 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL  365 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcChhhh
Confidence            1388899999998754    468999999999999996644433

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=274.37  Aligned_cols=252  Identities=20%  Similarity=0.244  Sum_probs=217.7

Q ss_pred             eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceee---EEe-cCCCcccEEEEEe--CCCeEEEEeCCCcE
Q 012679          175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL---RTL-RGGHRSRVGSLAW--NNHILTTGGMDGLI  248 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~---~~~-~~~~~~~v~~l~~--~~~~l~sg~~dg~i  248 (458)
                      .+..+ +|...|++|+|+|+|++||+|+ ||.|+|||+.++...   ..+ ..+|...|.+++|  ++.+|++|+.||.|
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i  121 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccc
Confidence            34444 7999999999999999999997 789999999765422   222 2348999999999  57899999999999


Q ss_pred             EEEEccCCC-eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          249 INNDVRVRD-HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       249 ~vwd~~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      ++||+.... .....+..|...+..++|+|++.++++++.|+.|++||+.+...      ......|...|.+++|++++
T Consensus       122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~------~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL------VRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccc
Confidence            999987554 34566788999999999999999999999999999999988765      66777899999999999976


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEE
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVL  407 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~  407 (458)
                      ..++ +++  .|+.|++||+++++.+..+.+...|.+++|+|+++.+++  |..++.+++||+.+.+.. ....|...|+
T Consensus       196 ~~~~-~~~--~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~-~~~~~~~~i~  269 (337)
T d1gxra_         196 TKLW-TGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKY-QLHLHESCVL  269 (337)
T ss_dssp             SEEE-EEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEE-EECCCSSCEE
T ss_pred             cccc-ccc--ccccccccccccceeecccccccceEEEEEcccccccce--eccccccccccccccccc-cccccccccc
Confidence            5554 444  899999999999999999999999999999999999998  558999999999988776 4567999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      +++|+|+|++|++++.||.|++||+..+..+..
T Consensus       270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999999999999999999998877654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-35  Score=273.23  Aligned_cols=247  Identities=17%  Similarity=0.233  Sum_probs=217.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee
Q 012679          182 ENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI  259 (458)
Q Consensus       182 h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  259 (458)
                      +.+.+..++++|+|+.||.+. ++.|.+||+.++.....+.+ |...|.+++|  ++++|++|+.||.|++||+......
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            345667899999999999985 55799999999998888886 9999999999  5799999999999999999887653


Q ss_pred             -EEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCC
Q 012679          260 -VETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGG  336 (458)
Q Consensus       260 -~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g  336 (458)
                       ...+.+|...|.+++|+|++++|++++.  +..++||++.+...      ...+.+|...|.+++|+|++..++++|+ 
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~------~~~l~~h~~~v~~v~~~~~~~~~l~sgs-  166 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS------NGNLTGQARAMNSVDFKPSRPFRIISGS-  166 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB------CBCCCCCSSCEEEEEECSSSSCEEEEEE-
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccc------cccccccccccccccccccceeeecccc-
Confidence             3567889999999999999999999986  45699999988766      6778899999999999999988888877 


Q ss_pred             CCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe-------CCCCcEEE
Q 012679          337 GGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS-------GHTSRVLF  408 (458)
Q Consensus       337 ~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~-------~h~~~V~~  408 (458)
                       .|+.|++||+++++....+.. ...|+++.|+|+++++++  |..|+.|++||..++..+..+.       +|.+.|++
T Consensus       167 -~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~  243 (311)
T d1nr0a1         167 -DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS--TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG  243 (311)
T ss_dssp             -TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred             -cccccccccccccccccccccccccccccccCcccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence             899999999999998888865 578999999999999988  4589999999999988877663       68899999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          409 MAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       409 l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ++|+|+|++|++|+.||+|+|||+.+++....
T Consensus       244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~  275 (311)
T d1nr0a1         244 LTWSPDGTKIASASADKTIKIWNVATLKVEKT  275 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            99999999999999999999999988776544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-33  Score=262.40  Aligned_cols=270  Identities=16%  Similarity=0.235  Sum_probs=209.8

Q ss_pred             cceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          144 LNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       144 ~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      +.|++++++.+++++.|++|+|||+.+++.  +.++.+|.+.|++++|+|+ .+|++|+.||.|++|+....+.......
T Consensus        16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~--~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~   92 (355)
T d1nexb2          16 ITCLQFEDNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEG   92 (355)
T ss_dssp             EEEEEEETTEEEEEETTTEEEEEETTTTEE--EEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEEECCCEEEEEeCCCeEEEEECCCCcE--EEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccc
Confidence            568899888899999999999999999876  7888999999999999985 5899999999999999988766554443


Q ss_pred             CC-cccEEEEEe--CCCeEEEEeCCCcEEEEEcc----------------------------------------------
Q 012679          224 GH-RSRVGSLAW--NNHILTTGGMDGLIINNDVR----------------------------------------------  254 (458)
Q Consensus       224 ~~-~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~----------------------------------------------  254 (458)
                      .. ...+....+  ++..+++++.|+.|++||++                                              
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (355)
T d1nexb2          93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN  172 (355)
T ss_dssp             CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred             ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence            11 111222222  23455555555555555543                                              


Q ss_pred             -----------------CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccc
Q 012679          255 -----------------VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSA  317 (458)
Q Consensus       255 -----------------~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  317 (458)
                                       +... +....++...+.++.|+|++.++++++.|+.|++||..++..      +..+.+|...
T Consensus       173 ~~~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------~~~~~~h~~~  245 (355)
T d1nexb2         173 IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL------MYTLQGHTAL  245 (355)
T ss_dssp             EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE------EEEECCCSSC
T ss_pred             eeeeecccceeeeeecccccc-eeeeeccccccccccccccceeeecccccceEEeeecccccc------cccccccccc
Confidence                             3222 344556777888999999999999999999999999988766      7888999999


Q ss_pred             eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE
Q 012679          318 VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA  397 (458)
Q Consensus       318 v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~  397 (458)
                      |.+++|++   .++++++  .||.|++||++++................+++++..+++  | .|+.|+|||+++++.+.
T Consensus       246 v~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g-~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         246 VGLLRLSD---KFLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS--G-SENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             CCEEEECS---SEEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEE--E-ETTEEEEEETTTCCBCC
T ss_pred             cccccccc---ceeeeee--cccccccccccccceecccccCCceEEEEEcCCCCEEEE--E-eCCEEEEEECCCCCEEE
Confidence            99999976   4677776  899999999999887766655444444556677766555  3 48999999999999875


Q ss_pred             -EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          398 -ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       398 -~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                       .+.+|.+.|++++|+|+ .++++++.||+++||.+
T Consensus       318 ~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         318 ANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             SCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence             56789999999999987 47888899999777654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-33  Score=266.53  Aligned_cols=275  Identities=23%  Similarity=0.384  Sum_probs=224.7

Q ss_pred             eEEEEcCCEEEEEECCCCCee--eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC--------
Q 012679          154 VLAIALGSTVYLWDASDGTTS--ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG--------  223 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~--------  223 (458)
                      .+....++.+.+|+....+..  .+....+|.+.|+||+|+|||++||+|+ ||.|+|||+.+++.+..+..        
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            456677788889997654432  2333346999999999999999999986 88999999999888776642        


Q ss_pred             ---------CCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          224 ---------GHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       224 ---------~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                               .|...|.+++|+  +++|++|+.||.|++||...... .....+|...|.++.|++++..+++|+.++.|+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc-ccccccccccccccccccccccccccccceeee
Confidence                     366779999994  68999999999999999987664 677889999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe--------CCCCeEE
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD--------TGSQVCA  364 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~--------~~~~v~~  364 (458)
                      +||......      ..... +.....++.+.+....++++++  .|+.|++||..++..+..+.        +...|.+
T Consensus       189 ~~d~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~  259 (388)
T d1erja_         189 IWDLRTGQC------SLTLS-IEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  259 (388)
T ss_dssp             EEETTTTEE------EEEEE-CSSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             eeecccccc------ccccc-cccccccccccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEE
Confidence            999887654      34443 3445566777776777888876  89999999999999887764        2457999


Q ss_pred             EEEcCCCCeEEEEecCCCCcEEEEeCCCce------------eeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          365 LLWNKNERELLSSHGFTQNQLTLWKYPSMV------------KMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       365 ~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~------------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      ++|+|+++.|++  |..|+.|++||+.++.            .......|...|++++|+|+|++|++|+.||.|++||+
T Consensus       260 l~~s~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~  337 (388)
T d1erja_         260 VVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK  337 (388)
T ss_dssp             EEECTTSSEEEE--EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEECCCCCEEEE--EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            999999999988  5589999999987543            34455678999999999999999999999999999999


Q ss_pred             CCCCccccc
Q 012679          433 FGAPQVISK  441 (458)
Q Consensus       433 ~~~~~~~~~  441 (458)
                      .+++.+...
T Consensus       338 ~~~~~~~~l  346 (388)
T d1erja_         338 KSGNPLLML  346 (388)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCcEEEEE
Confidence            988776554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-33  Score=258.73  Aligned_cols=253  Identities=21%  Similarity=0.365  Sum_probs=225.2

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~  253 (458)
                      ...+.+|.+.|++|+|+|++++||+|+.||+|+|||+.+++.+..+.. |...|.+++|+  +.++++++.++.+.+|+.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccccccccccccccccccc
Confidence            456889999999999999999999999999999999999999999987 99999999994  689999999999999998


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      ..... ...+.+|...+.++.|+++++.+++++.|+.+++||++++..      +..+..|...+.+++|+|++ .++++
T Consensus        89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~l~~  160 (317)
T d1vyhc1          89 QGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------VKTFTGHREWVRMVRPNQDG-TLIAS  160 (317)
T ss_dssp             TSSCE-EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------EEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred             ccccc-ccccccccccceeeeccCCCceEEeeccCcceeEeeccccee------eeEEccCCCcceeeecccCC-CEEEE
Confidence            86664 566778999999999999999999999999999999988765      77888999999999999975 45666


Q ss_pred             eCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCC--------------------eEEEEecCCCCcEEEEeCCC
Q 012679          334 GGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNER--------------------ELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       334 ~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~--------------------~l~~~~g~~d~~i~iwd~~~  392 (458)
                      ++  .|+.|++|+..+++.+..+.. ...+..+.|+|++.                    .+++  |..|+.|++|++.+
T Consensus       161 ~~--~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~~~~~~~  236 (317)
T d1vyhc1         161 CS--NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVST  236 (317)
T ss_dssp             EE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTT
T ss_pred             Ee--CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe--ccCCCEEEEEECCC
Confidence            65  899999999999999888754 56688888887653                    3444  55899999999999


Q ss_pred             ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      ++.+.++.+|...|.+++|+|++++|++|+.||.|++||+.+++.+...
T Consensus       237 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            9999999999999999999999999999999999999999887766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-33  Score=263.44  Aligned_cols=280  Identities=15%  Similarity=0.257  Sum_probs=214.6

Q ss_pred             cceeeccC-CCeEEEEcCCEE--EEEECCCCCeeeEEEecCC-CCCEEEEEEcC--CCCEEEEEecCCeEEEEeCCCcee
Q 012679          144 LNLLDWGS-SNVLAIALGSTV--YLWDASDGTTSELVTVDDE-NGPVTSVNWAP--DGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v--~iwd~~~~~~~~~~~~~~h-~~~V~~v~~s~--~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ..+++|++ +..++.+.+..+  +.|+....+......+.+| ...|++++|+|  +|.+||+|+.||+|+|||+..++.
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~   99 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE   99 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcc
Confidence            45678876 456666666654  4465555555556777777 46799999998  678999999999999999876543


Q ss_pred             eE--------EecCCCcccEEEEEeC--CCeEEEEe--CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCE-EEE
Q 012679          218 LR--------TLRGGHRSRVGSLAWN--NHILTTGG--MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQ-LAS  284 (458)
Q Consensus       218 ~~--------~~~~~~~~~v~~l~~~--~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s  284 (458)
                      ..        .+.. |..+|.+++|+  +..|++++  .++.+.+|+..++.. +..+.+|...|.+++|+|++.+ +++
T Consensus       100 ~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1         100 SNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             eeeeeccccccccc-ccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccceEEE
Confidence            22        2333 88899999994  67777665  467899999987664 6788899999999999998875 678


Q ss_pred             EECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeE
Q 012679          285 GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVC  363 (458)
Q Consensus       285 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~  363 (458)
                      ++.|+.|++||....+..   ........|...|.+++|+|++..++++++  .|+.|++||+++++++..+.. ...+.
T Consensus       178 ~~~d~~v~~~d~~~~~~~---~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~  252 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFS---ASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQ  252 (325)
T ss_dssp             EETTTEEEEEETTTBEEE---EEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred             eecccccccccccccccc---eecccccCCCCccEEeeeccccceeccccc--cccceeeeeeccccccccccccccccc
Confidence            999999999998765431   113334567888999999998888888877  899999999999999988864 33444


Q ss_pred             EEEEc---CCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc--EEEEEEcCC-CCEEEEEeCCCcEEEEec
Q 012679          364 ALLWN---KNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR--VLFMAQSPD-GCTVASAAADETLRFWNV  432 (458)
Q Consensus       364 ~~~~s---~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~--V~~l~~spd-g~~l~s~s~Dg~i~iW~~  432 (458)
                      .+.|+   +++++|+++  ..|+.|+|||+.+++.+..+..|...  +..+++.+. +.+|++++.||+|++||+
T Consensus       253 ~~~~s~~~~dg~~l~s~--s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         253 GGIFALSWLDSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             SCEEEEEESSSSEEEEE--ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cceeeeeccCCCEEEEE--eCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            44444   678888884  48999999999999999988766543  334444432 347899999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-33  Score=268.35  Aligned_cols=245  Identities=18%  Similarity=0.249  Sum_probs=203.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCce--eeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCe
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANR--QLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDH  258 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  258 (458)
                      .++|+|++|+|+|++||+|+.||.|+|||..+++  .+..+.+ |...|.+++|  ++++|++|+.|+.|++||+.....
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            4689999999999999999999999999998775  5566776 9999999999  479999999999999999987653


Q ss_pred             -eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          259 -IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       259 -~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                       ....+.+|...|.+++|+|+++.|++|+.|+.|++|++.......  ........|...|.+++|+|++. ++++++  
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~--~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s--  160 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--VCKHIKKPIRSTVLSLDWHPNSV-LLAAGS--  160 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE--EEEEECTTCCSCEEEEEECTTSS-EEEEEE--
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccc--ccccccccccccccccccccccc-ceeccc--
Confidence             234566889999999999999999999999999999987665421  11344567889999999999755 556666  


Q ss_pred             CCCeEEEEECCCCC------------------eeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679          338 GDRCIKFWNTHTGA------------------CLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE  398 (458)
Q Consensus       338 ~d~~i~lwd~~~~~------------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~  398 (458)
                      .|+.|++||.....                  .+... .+...+.+++|+|+++.+++  +..|+.|++||+.++..+..
T Consensus       161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s--~~~d~~i~iwd~~~~~~~~~  238 (371)
T d1k8kc_         161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAVAT  238 (371)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEEEE
T ss_pred             cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc--cccCCcceEEeeecccceee
Confidence            89999999986543                  22222 23456999999999999888  44799999999999999999


Q ss_pred             EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 012679          399 LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAP  436 (458)
Q Consensus       399 ~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~  436 (458)
                      +.+|..+|.+++|+|++++|++ +.|+.+++|......
T Consensus       239 ~~~~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         239 LASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAA  275 (371)
T ss_dssp             EECSSCCEEEEEEEETTEEEEE-ETTSSCEEEEEETTT
T ss_pred             eecccccceeeeecCCCCEEEE-EcCCceEEEEeeCCC
Confidence            9999999999999999987775 558888887765544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-31  Score=250.73  Aligned_cols=281  Identities=23%  Similarity=0.405  Sum_probs=222.0

Q ss_pred             CCceeeeCCCCCCccccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 012679          128 SSERTLDAPDLVDDYYLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQV  207 (458)
Q Consensus       128 ~~~~~l~~~~~~~d~~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v  207 (458)
                      .+.++|..+.  +. -+.+++|+++.+++++.||+|+|||+.+++.  +.++.+|.+.|.+++|+++  +|++|+.|+.+
T Consensus         7 ~~~~~l~GH~--~~-V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~--~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~   79 (342)
T d2ovrb2           7 KSPKVLKGHD--DH-VITCLQFCGNRIVSGSDDNTLKVWSAVTGKC--LRTLVGHTGGVWSSQMRDN--IIISGSTDRTL   79 (342)
T ss_dssp             CCCEEEECST--TS-CEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred             CcCEEECCcC--Cc-eEEEEEECCCEEEEEeCCCeEEEEECCCCCE--EEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence            4567777532  22 2457899988899999999999999999987  7788999999999999875  99999999999


Q ss_pred             EEEeCCCceeeEEecCCCcccEE----------------------------------------EEEeCCCeEEEEeCCCc
Q 012679          208 QLWDSTANRQLRTLRGGHRSRVG----------------------------------------SLAWNNHILTTGGMDGL  247 (458)
Q Consensus       208 ~iwd~~~~~~~~~~~~~~~~~v~----------------------------------------~l~~~~~~l~sg~~dg~  247 (458)
                      ++|+............ +...+.                                        ........+++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          80 KVWNAETGECIHTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEETTTTEEEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             cccccccccceecccc-cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            9999876654433332 221111                                        11223456788888888


Q ss_pred             EEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          248 IINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       248 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      |++||.+... .+..+.+|...+..+.+  ++.+|++|+.||.|++||++....      +..+..|...+.++++++  
T Consensus       159 i~~~d~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~------~~~~~~~~~~v~~~~~~~--  227 (342)
T d2ovrb2         159 VKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC------IHTLTGHQSLTSGMELKD--  227 (342)
T ss_dssp             EEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE------EEEECCCCSCEEEEEEET--
T ss_pred             EEEeecccce-eeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeeccccee------eeEecccccceeEEecCC--
Confidence            8888887655 36677788777766554  788999999999999999988766      788889999999998876  


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe---
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS---  400 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~---  400 (458)
                       .++++++  .|+.|++||+...+....+...    ..+.++.+  +++++++  |..||.|+|||+.+++.+.++.   
T Consensus       228 -~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s--~s~Dg~i~iwd~~tg~~i~~~~~~~  300 (342)
T d2ovrb2         228 -NILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVIT--SSDDGTVKLWDLKTGEFIRNLVTLE  300 (342)
T ss_dssp             -TEEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEE--EETTSEEEEEETTTCCEEEEEEECT
T ss_pred             -CEEEEEc--CCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEE--EcCCCEEEEEECCCCCEEEEEeccc
Confidence             3677766  8999999999999988877542    34555555  4567777  4489999999999999988874   


Q ss_pred             --CCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEecCC
Q 012679          401 --GHTSRVLFMAQSPDGCTVASAAADET----LRFWNVFG  434 (458)
Q Consensus       401 --~h~~~V~~l~~spdg~~l~s~s~Dg~----i~iW~~~~  434 (458)
                        +|...|++++|+|++.+|++|+.||+    |++||+..
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence              57788999999999999999999986    99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-32  Score=255.73  Aligned_cols=247  Identities=17%  Similarity=0.212  Sum_probs=194.8

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCC-CeEEEEeCCCcEEEEEcc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNN-HILTTGGMDGLIINNDVR  254 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~vwd~~  254 (458)
                      ...+.+|.+.|++++|+|+|++||+|+.||.|++||+.+++.++.+...|...|.+++|++ ..+++++.|+.+++|+..
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            5677899999999999999999999999999999999999999888766999999999953 457778889999999975


Q ss_pred             CCCe-------------e-------------------EEE-------EcccccceEeEEEcCCCCEEEEEECCCcEEEEe
Q 012679          255 VRDH-------------I-------------------VET-------YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       255 ~~~~-------------~-------------------~~~-------~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      ....             .                   +..       .......+.+++|+|++++|++|+.||.|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3210             0                   000       001234577899999999999999999999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe----CCCCeEEEEEcCCC
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD----TGSQVCALLWNKNE  371 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~----~~~~v~~~~~s~~~  371 (458)
                      ++.....     ......|...|.+++|+|++.. +++++  .|+.|++||+.++.......    +...|.+++|+|++
T Consensus       165 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         165 LSGASVS-----EVKTIVHPAEITSVAFSNNGAF-LVATD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             EETTEEE-----EEEEEECSSCEEEEEECTTSSE-EEEEE--TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             ccccccc-----cccccccccccccccccccccc-ccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            8766431     2234468899999999997655 45554  89999999999887665432    35679999999999


Q ss_pred             CeEEEEecCCCCcEEEEeCCCceeeE--EEeCCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          372 RELLSSHGFTQNQLTLWKYPSMVKMA--ELSGHT-SRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       372 ~~l~~~~g~~d~~i~iwd~~~~~~~~--~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                      +++++  |..||.|++||+.++....  ....|. ..|.++.| +++.+|++++.||+|++||+.
T Consensus       237 ~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         237 VRLAT--GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SEEEE--EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             cceEE--EcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99998  5589999999998765433  333444 45666654 567899999999999999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-31  Score=243.51  Aligned_cols=266  Identities=21%  Similarity=0.424  Sum_probs=221.9

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+.|++|+++.+++++.||+|+|||+.+++.  +..+.+|.+.|++++|  ++++|++|+.||.|++|++..+.......
T Consensus        17 ~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~--~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          17 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             CEEEEECCSSEEEEEESSSCEEEEESSSCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CEEEEEEcCCEEEEEeCCCeEEEEECCCCcE--EEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence            4668899888899999999999999999887  7788899999999987  67899999999999999999998887777


Q ss_pred             CCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCe--eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          223 GGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDH--IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       223 ~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      . +.............++++..++.+.+||......  ....+..|...|..+.+.  ...+++++.|+.|++||.+..+
T Consensus        93 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~  169 (293)
T d1p22a2          93 H-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCE  169 (293)
T ss_dssp             C-CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCC
T ss_pred             c-cccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCc
Confidence            5 5556666666788999999999999999987653  345567888888888775  4578899999999999998876


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecC
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      .      +..+.++...|..+.+++   ..+++++  .|+.|++||++++..+.......... ..+.+++..+++  |.
T Consensus       170 ~------~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s--g~  235 (293)
T d1p22a2         170 F------VRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVS--GA  235 (293)
T ss_dssp             E------EEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEE--EE
T ss_pred             E------EEEEcccccccccccCCC---CeEEEec--CCCEEEEEecccceeeeeecccceee-eeccccceEEEE--Ec
Confidence            6      778888888898888865   3566655  89999999999999998886654433 246677888887  55


Q ss_pred             CCCcEEEEeCCC---------ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 012679          381 TQNQLTLWKYPS---------MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWN  431 (458)
Q Consensus       381 ~d~~i~iwd~~~---------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~  431 (458)
                      .||.|++||+..         ...+..+.+|.+.|++++|  ++.+|+||+.||+|+|||
T Consensus       236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            899999999743         3467888999999999999  466899999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=6.9e-29  Score=233.31  Aligned_cols=254  Identities=17%  Similarity=0.330  Sum_probs=215.5

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~  253 (458)
                      ..++.+|.+.|++|+|+|++++||+|+.||.|+|||+.+++.+..+.. |...|.+++|+  +.++++|+.|+.+.+|+.
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeecccceeecccc
Confidence            567899999999999999999999999999999999999999999987 99999999994  789999999999999998


Q ss_pred             cCCCe---eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcE
Q 012679          254 RVRDH---IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNL  330 (458)
Q Consensus       254 ~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~l  330 (458)
                      .....   ....+.+|.......... .+..++.+..|.....++......      ......+...+....+.+. ..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~  198 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQ------TTTFTGHTGDVMSLSLAPD-TRL  198 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEE------EEEEECCSSCEEEEEECTT-SSE
T ss_pred             cccccccccceecccccccccccccc-cccccccccccccccccccccccc------cccccccceeEeeeccccc-cce
Confidence            76532   345566777766655554 556788888999999998776554      5555667788889999985 556


Q ss_pred             EEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEe--CCCCcEE
Q 012679          331 LATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELS--GHTSRVL  407 (458)
Q Consensus       331 l~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~--~h~~~V~  407 (458)
                      +++++  .|+.|++||+++++++..+.. ...|.+++|+|+++++++  |..|+.|++|++.....+..+.  .|...|+
T Consensus       199 ~~~~~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s--~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~  274 (340)
T d1tbga_         199 FVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EEEEE--TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             eEEee--cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEE--EeCCCeEEEEeecccccccccccccccCceE
Confidence            66655  899999999999999988865 578999999999999988  4589999999999988877664  5667799


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      +++|+|++++|++|+.||.|++||+..++.+....
T Consensus       275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence            99999999999999999999999998887765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.5e-30  Score=247.98  Aligned_cols=273  Identities=16%  Similarity=0.204  Sum_probs=198.1

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCe----eeEEEecCCCCCEEEEEEc------C-CCCEEEEEecCCeEEEEe
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTT----SELVTVDDENGPVTSVNWA------P-DGRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~----~~~~~~~~h~~~V~~v~~s------~-~g~~la~g~~dg~v~iwd  211 (458)
                      .+.+++++++.+++++.|++|+|||..+.+.    ........|...+..+...      . ++.++++++.||.|++|+
T Consensus        16 ~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~   95 (393)
T d1sq9a_          16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR   95 (393)
T ss_dssp             CEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred             ccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEE
Confidence            4566778888999999999999999765532    1223333455554433321      1 345788999999999998


Q ss_pred             CCCceeeEEe-----c----CCCcccEEEEEeC-------CCeEEEEeCCCcEEEEEccCCCe-----------------
Q 012679          212 STANRQLRTL-----R----GGHRSRVGSLAWN-------NHILTTGGMDGLIINNDVRVRDH-----------------  258 (458)
Q Consensus       212 ~~~~~~~~~~-----~----~~~~~~v~~l~~~-------~~~l~sg~~dg~i~vwd~~~~~~-----------------  258 (458)
                      +........+     .    ..+...+..++|.       +.++++++.||.+.+|++.....                 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  175 (393)
T d1sq9a_          96 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG  175 (393)
T ss_dssp             EEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred             ccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceeccc
Confidence            7544321111     1    1244566777772       36899999999999999853220                 


Q ss_pred             eEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC
Q 012679          259 IVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       259 ~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      .......+...+.+++|+|++ +||+|+.||+|+|||+.+++..........+.+|..+|.+++|+|++. +|++|+  .
T Consensus       176 ~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs--~  251 (393)
T d1sq9a_         176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAH--D  251 (393)
T ss_dssp             EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEE--E
T ss_pred             ceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeec--C
Confidence            011122455668899999997 899999999999999988765333333455678999999999999765 556655  5


Q ss_pred             CC---eEEEEECCCCCeeEEEe--------------CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679          339 DR---CIKFWNTHTGACLNSVD--------------TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       339 d~---~i~lwd~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~  401 (458)
                      |+   .|++||+.+++++..+.              |...|++++|+|++++|++  |..|++|+|||+.+++++.++++
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S--~s~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE--ECCCCEEEEEECCCCCEEEEECC
Confidence            65   59999999999988874              4567999999999999988  55899999999999999999999


Q ss_pred             CCCcEE----EEEEcCCCCEEEEE
Q 012679          402 HTSRVL----FMAQSPDGCTVASA  421 (458)
Q Consensus       402 h~~~V~----~l~~spdg~~l~s~  421 (458)
                      |.+.|.    .++|+|++..++++
T Consensus       330 H~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             cCCcccCCccEEEECCCCCEEEEc
Confidence            987764    46777777666544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=236.96  Aligned_cols=247  Identities=17%  Similarity=0.201  Sum_probs=200.9

Q ss_pred             CCEEEEEEcCCCCEEEEEecCC-eEEEEeCCCc--eeeEEecCCCcccEEEEEeC----CCeEEEEeCCCcEEEEEccCC
Q 012679          184 GPVTSVNWAPDGRHIAIGLNNC-QVQLWDSTAN--RQLRTLRGGHRSRVGSLAWN----NHILTTGGMDGLIINNDVRVR  256 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g~~dg-~v~iwd~~~~--~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~vwd~~~~  256 (458)
                      ..+++++|+|+|+.||+++.+. .|+.||....  ..+..+.+.+...|++++|+    +.+|++|+.||+|++||+...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3578999999999999987654 3566665433  34566666346789999994    479999999999999998754


Q ss_pred             Ce-------eEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCC
Q 012679          257 DH-------IVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       257 ~~-------~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      ..       ....+..|.++|.+++|++++++|++++.  ++.+.+|+..++..      +..+.+|...|.+++|+|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~  171 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS------LGEVSGHSQRINACHLKQSR  171 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE------EEECCSCSSCEEEEEECSSS
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc------ceeeeecccccccccccccc
Confidence            32       12335578899999999999999988765  67899999987765      78888999999999999998


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCeeEEEeC----CCCeEEEEEcCCC-CeEEEEecCCCCcEEEEeCCCceeeEEEeCC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACLNSVDT----GSQVCALLWNKNE-RELLSSHGFTQNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~----~~~v~~~~~s~~~-~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ..++++++  .|+.|++||..+++....+..    ...|.+++|+|++ ..+++  +..|+.|++||+.+++.+..+.+|
T Consensus       172 ~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         172 PMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT--VGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             SCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE--EETTCCEEEEETTTCCEEEECCBT
T ss_pred             cceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccc--cccccceeeeeecccccccccccc
Confidence            88888876  899999999998887776643    4569999999975 55555  448999999999999999999999


Q ss_pred             CCcEEEEEEc---CCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          403 TSRVLFMAQS---PDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       403 ~~~V~~l~~s---pdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ...+..+.|+   |+|++|++++.|+.|+|||+..++.+..
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~  288 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK  288 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            8887666665   7899999999999999999998776544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.7e-28  Score=229.04  Aligned_cols=254  Identities=20%  Similarity=0.334  Sum_probs=200.1

Q ss_pred             eEEEecCCCCCE-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe-CCCeEEEEeCCCcEEEEE
Q 012679          175 ELVTVDDENGPV-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW-NNHILTTGGMDGLIINND  252 (458)
Q Consensus       175 ~~~~~~~h~~~V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd  252 (458)
                      +..++.+|.+.| +|++|  ++++||+|+.||+|+|||+.+++.+.++.+ |...|.+++| ++.+|++|+.||.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCCCEEEEEeccccccccc
Confidence            356789998875 66655  688999999999999999999999999997 9999999999 468999999999999999


Q ss_pred             ccCCCeeEEEE-cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcc-----------------eeeeeeccc
Q 012679          253 VRVRDHIVETY-RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVT-----------------QWLHRLEEH  314 (458)
Q Consensus       253 ~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~-----------------~~~~~~~~h  314 (458)
                      +.......... ..+...+....+++++.++++++.|+.|++||+.........                 ........|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            98776433222 233445566778899999999999999999998875432110                 011122234


Q ss_pred             ccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc
Q 012679          315 TSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       315 ~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      ...+....  ++ ..+++++.  .|+.|++||+.+++.+..... ...+.++.|++++..+++  +..|+.|++||..++
T Consensus       161 ~~~v~~~~--~~-~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         161 MASVRTVS--GH-GNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS--ASMDTTIRIWDLENG  233 (355)
T ss_dssp             SSCEEEEE--EE-TTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE--EETTSCEEEEETTTC
T ss_pred             cccccccc--cc-cceeeeec--ccceeeeeecccccceeeeeccccccccccccccceeeec--ccccceEEeeecccc
Confidence            44444333  33 34566655  899999999999998887764 567899999999999998  458999999999999


Q ss_pred             eeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          394 VKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       394 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      ..+..+.+|...|.++++++  ++|++|+.||+|++||+.+..+...
T Consensus       234 ~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccccccccccc--ceeeeeecccccccccccccceecc
Confidence            99999999999999999964  6899999999999999987765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-28  Score=235.55  Aligned_cols=255  Identities=18%  Similarity=0.228  Sum_probs=191.1

Q ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee------eEEecCCCcccEEEEE------eC---CCeEEE
Q 012679          177 VTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ------LRTLRGGHRSRVGSLA------WN---NHILTT  241 (458)
Q Consensus       177 ~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~------~~~~~~~~~~~v~~l~------~~---~~~l~s  241 (458)
                      ...++|.+.|.++++++  ++|++|+.|++|+|||..+.+.      ...... |...+..+.      .+   ..++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeee-ccCCceEeeeEeeeccCCCCCcEEEE
Confidence            44579999999999864  6999999999999999765431      112222 444433332      22   357889


Q ss_pred             EeCCCcEEEEEccCCCeeE----EEE-----cccccceEeEEEcCC-----CCEEEEEECCCcEEEEeCCCCCCCC----
Q 012679          242 GGMDGLIINNDVRVRDHIV----ETY-----RGHNQEVCGLKWSAS-----GQQLASGGNDNLLHIWDRSMASSNS----  303 (458)
Q Consensus       242 g~~dg~i~vwd~~~~~~~~----~~~-----~~h~~~v~~l~~spd-----~~~l~sg~~dg~i~iwd~~~~~~~~----  303 (458)
                      ++.||.|++|++.......    ...     ..+...+..++|.++     +.++++++.||.+++||+.......    
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            9999999999986543211    111     134556778888775     4688999999999999975432210    


Q ss_pred             -----c---ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEe-------CCCCeEEEEEc
Q 012679          304 -----V---TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVD-------TGSQVCALLWN  368 (458)
Q Consensus       304 -----~---~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~-------~~~~v~~~~~s  368 (458)
                           .   .........+...+.+++|+|++  ++++|+  .|++|++||+.+++++..+.       +...|.+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC--EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                 0   00112223455678999999975  778877  99999999999999887764       34679999999


Q ss_pred             CCCCeEEEEecCCCC---cEEEEeCCCceeeEEEe-------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          369 KNERELLSSHGFTQN---QLTLWKYPSMVKMAELS-------------GHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~---~i~iwd~~~~~~~~~~~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                      |++++|++++  .|+   .|++||+.+++.+..+.             +|.+.|++++|+|||++|+||+.|++|+|||+
T Consensus       241 pdg~~l~sgs--~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         241 PQGSLLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             SSTTEEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cccceeeeec--CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            9999999853  555   59999999998888774             79999999999999999999999999999999


Q ss_pred             CCCCcccc
Q 012679          433 FGAPQVIS  440 (458)
Q Consensus       433 ~~~~~~~~  440 (458)
                      .+++.+..
T Consensus       319 ~~g~~~~~  326 (393)
T d1sq9a_         319 KTKERITT  326 (393)
T ss_dssp             TTTEEEEE
T ss_pred             CCCCEEEE
Confidence            98876654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3e-28  Score=227.97  Aligned_cols=285  Identities=11%  Similarity=0.103  Sum_probs=213.2

Q ss_pred             ccceeeccC--CCeEEEEcCCEEEEEECCCCCe-eeEEEecCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEeCCCceee
Q 012679          143 YLNLLDWGS--SNVLAIALGSTVYLWDASDGTT-SELVTVDDENGPVTSVNWAPD-GRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       143 ~~~~~~~~~--~~~la~~~d~~v~iwd~~~~~~-~~~~~~~~h~~~V~~v~~s~~-g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      .+++++|++  +.|++++.||+|+|||+.++.. ..+....+|..+|++++|+|+ +.+|++|+.||.|++|++..+...
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~   92 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF   92 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence            589999987  4577888999999999876543 233444468999999999986 568999999999999999988877


Q ss_pred             EEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee---EEEEccc--ccceEeEEEcCCCCEEEEEECCCcE
Q 012679          219 RTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI---VETYRGH--NQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       219 ~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~~h--~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                      ......+........+  +...+++++.++.+.+||++.....   ......+  ......+.+.+++..+++++.|+.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  172 (342)
T d1yfqa_          93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV  172 (342)
T ss_dssp             EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcE
Confidence            7776533333333333  6789999999999999998754422   2222222  2334556777889999999999999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee------EEE---------
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL------NSV---------  356 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~------~~~---------  356 (458)
                      ++||+........   ......+...+.+.++.+.....+++++  .||.+.+|+.......      ..+         
T Consensus       173 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
T d1yfqa_         173 QWFRLPLCEDDNG---TIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD  247 (342)
T ss_dssp             EEEESSCCTTCCC---EEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred             EEEecccCcccce---eeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCC
Confidence            9999987765322   2233445566777788777777777776  8999999998654321      111         


Q ss_pred             -eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          357 -DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       357 -~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                       .+...+.+++|+|++++|++  |+.||.|+|||+.+++.+.++..+. .+..++|+|+|++|++++.|+++++|.....
T Consensus       248 ~~~~~~v~~l~~sp~~~~las--g~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         248 TNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             CSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred             CcccccceeEEecCCccEEEE--ECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence             12345889999999999988  5589999999999999998886432 3445778889999999999999998876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-28  Score=225.34  Aligned_cols=248  Identities=22%  Similarity=0.391  Sum_probs=191.1

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEc
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~  253 (458)
                      .....+.+|.+.|.+ +++++|++||+|+.||+|+|||+.+++.++++.+ |...|.+++|++++|++|+.|+.+++|+.
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCCCccccceeccccccccc
Confidence            336678899999865 3666899999999999999999999999999987 99999999999999999999999999998


Q ss_pred             cCCCeeEEEEcccccceE--------------------------------------eEEEcCCCCEEEEEECCCcEEEEe
Q 012679          254 RVRDHIVETYRGHNQEVC--------------------------------------GLKWSASGQQLASGGNDNLLHIWD  295 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~--------------------------------------~l~~spd~~~l~sg~~dg~i~iwd  295 (458)
                      ...... .....+...+.                                      ...+.+....+++++.|+.|++||
T Consensus        85 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          85 ETGECI-HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTEEE-EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             ccccce-ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            764421 11111111111                                      112233556778888889999998


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeE
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNEREL  374 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l  374 (458)
                      ......      +..+.+|...+..+.+.   ...+++++  .|+.|++||++.++++..+..+ ..+.++.++  ++++
T Consensus       164 ~~~~~~------~~~~~~~~~~~~~~~~~---~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l  230 (342)
T d2ovrb2         164 PETETC------LHTLQGHTNRVYSLQFD---GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL  230 (342)
T ss_dssp             GGGTEE------EEEECCCSSCEEEEEEC---SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE
T ss_pred             ccccee------eEEEcCcccccccccCC---CCEEEEEe--CCCeEEEeecccceeeeEecccccceeEEecC--CCEE
Confidence            776654      67777888777766664   34566665  8999999999999999888654 456666665  4577


Q ss_pred             EEEecCCCCcEEEEeCCCceeeEEEeC---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCccccc
Q 012679          375 LSSHGFTQNQLTLWKYPSMVKMAELSG---HTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       375 ~~~~g~~d~~i~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      ++  |..|+.|++||....+....+.+   |...+.++.++  +.++++|+.||+|++||+.+++.+.+.
T Consensus       231 ~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         231 VS--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EE--EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EE--EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            77  55899999999999988888765   45667777775  569999999999999999988766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.9e-28  Score=222.18  Aligned_cols=257  Identities=15%  Similarity=0.151  Sum_probs=196.9

Q ss_pred             ccceeeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          143 YLNLLDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       143 ~~~~~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      .++++.|++  |++++.||+|++||+.++       ..+|...|.++++++++ .+++++.|++|++|++...+      
T Consensus        15 ~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~------   78 (287)
T d1pgua2          15 GITALTVNP--LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE------   78 (287)
T ss_dssp             CEEEEETTT--TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE------
T ss_pred             ceEEEEECc--EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc------
Confidence            578899976  999999999999998653       25789999999999765 57889999999999975432      


Q ss_pred             CCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCC-cEEEEeCCCCC
Q 012679          223 GGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDN-LLHIWDRSMAS  300 (458)
Q Consensus       223 ~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg-~i~iwd~~~~~  300 (458)
                        ....+.++++. +..++..+.++.+.+|+...... +..+..+ ..+  .++++++..+++++.|+ .|++|++....
T Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~  152 (287)
T d1pgua2          79 --FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI-IKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE  152 (287)
T ss_dssp             --CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE-EEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred             --cccceeeeeeccCCceEEEeecccceeeeccceee-eeecccc-cee--eeeeccCcceeeeccccceeeeeeccccc
Confidence              33346667774 45566666777889999887664 4444332 333  45667888888888775 79999986543


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE--eCCCCeEEEEEcCCC-------
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV--DTGSQVCALLWNKNE-------  371 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~--~~~~~v~~~~~s~~~-------  371 (458)
                      ..     ......|...+.+++|+|++. +|++++  .||.|++||+.++......  .+...|.+++|+|.+       
T Consensus       153 ~~-----~~~~~~~~~~v~~~~~s~~~~-~l~~g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  224 (287)
T d1pgua2         153 VS-----FDLKTPLRAKPSYISISPSET-YIAAGD--VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE  224 (287)
T ss_dssp             EE-----EECSSCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             ee-----eeeeeccCCceeEEEeccCcc-cccccc--ccccccceeecccccccccccccccccceeeeccccccccccc
Confidence            31     222335778899999999865 455555  8999999999998876543  345679999998865       


Q ss_pred             ---CeEEEEecCCCCcEEEEeCCC-ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 012679          372 ---RELLSSHGFTQNQLTLWKYPS-MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNV  432 (458)
Q Consensus       372 ---~~l~~~~g~~d~~i~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~  432 (458)
                         .++++  |..|+.|+|||+.+ .+.+..+.+|...|++++|+|++ .|+|++.||+|++|++
T Consensus       225 ~~~~~l~s--gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         225 IEEDLVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CSCCEEEE--EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCCeeEe--ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence               45555  56899999999976 55677778999999999999986 6899999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.2e-27  Score=221.89  Aligned_cols=238  Identities=16%  Similarity=0.219  Sum_probs=179.4

Q ss_pred             cccceeeccCC--CeEEEEcCCEEEEEECCCCCeeeEEEe-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee-
Q 012679          142 YYLNLLDWGSS--NVLAIALGSTVYLWDASDGTTSELVTV-DDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ-  217 (458)
Q Consensus       142 ~~~~~~~~~~~--~~la~~~d~~v~iwd~~~~~~~~~~~~-~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~-  217 (458)
                      ..+++++|+++  .+++++.|+.|++||+++++.  +..+ ..|...|++++|+|+|+++ +++.|+.+++|+...... 
T Consensus        13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          13 KAITALSSSADGKTLFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSC
T ss_pred             CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCcccc
Confidence            35888999873  578889999999999999886  4444 4688999999999999755 566789999998643210 


Q ss_pred             ----e--------EE--ec------------------------CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCC
Q 012679          218 ----L--------RT--LR------------------------GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRD  257 (458)
Q Consensus       218 ----~--------~~--~~------------------------~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  257 (458)
                          .        ..  +.                        ......+.+++|  ++.+|++|+.||.|.+||+++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~  169 (299)
T d1nr0a2          90 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  169 (299)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                0        00  00                        012234566677  46899999999999999998776


Q ss_pred             eeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          258 HIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       258 ~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                      ........|...|++++|+|++++|++++.|+.|++||+......   .....+..|...|.+++|+|++ .++++++  
T Consensus       170 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs--  243 (299)
T d1nr0a2         170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL---AHTNSWTFHTAKVACVSWSPDN-VRLATGS--  243 (299)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE---SCCCCCCCCSSCEEEEEECTTS-SEEEEEE--
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccc-cceEEEc--
Confidence            444455678999999999999999999999999999998775441   1245567899999999999975 4566665  


Q ss_pred             CCCeEEEEECCCCCeeEEEe---C-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCC
Q 012679          338 GDRCIKFWNTHTGACLNSVD---T-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYP  391 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~  391 (458)
                      .|+.|++||++++.....+.   + ...+..+.| +++..|+++  ..|+.|++||++
T Consensus       244 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~--s~D~~i~iWdl~  298 (299)
T d1nr0a2         244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSA--GQDSNIKFWNVP  298 (299)
T ss_dssp             TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEE--ETTSCEEEEECC
T ss_pred             CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEE--eCCCEEEEEecc
Confidence            89999999999876544332   2 234666655 566778774  489999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.8e-28  Score=227.22  Aligned_cols=260  Identities=9%  Similarity=0.053  Sum_probs=188.7

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec--CCCcccEEEEEeC---CCeEEEEeCCCcEEE
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR--GGHRSRVGSLAWN---NHILTTGGMDGLIIN  250 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~l~~~---~~~l~sg~~dg~i~v  250 (458)
                      +...++|.+.|++|+|+|++++||+|+.||+|+|||+.++.....+.  .+|...|.+++|.   +.+|++|+.||.|++
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            44567899999999999999999999999999999987654332221  1399999999993   458999999999999


Q ss_pred             EEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeeccc--ccceeEEEecCCCC
Q 012679          251 NDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH--TSAVKAIAWCPFQS  328 (458)
Q Consensus       251 wd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~~  328 (458)
                      |++............+........+.+++..+++++.|+.+++||++........  ......+  ......+.+.+.+ 
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-  160 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA--VKNLNSNNTKVKNKIFTMDTNS-  160 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE--EEESCSSSSSSCCCEEEEEECS-
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceee--ecccccccccceeeeeeeeccC-
Confidence            9998877644444444555556667778999999999999999998765442211  1222222  2234455666644 


Q ss_pred             cEEEEeCCCCCCeEEEEECCCCCeeEEE----eCCCCeEEEEEcCC-CCeEEEEecCCCCcEEEEeCCCceee------E
Q 012679          329 NLLATGGGGGDRCIKFWNTHTGACLNSV----DTGSQVCALLWNKN-ERELLSSHGFTQNQLTLWKYPSMVKM------A  397 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~g~~d~~i~iwd~~~~~~~------~  397 (458)
                      ..+++++  .|+.|++||+..+......    .....+....+.+. +..+++  +..+|.+.+|++......      .
T Consensus       161 ~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         161 SRLIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             SEEEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             Cceeeec--CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEe--ecCCCeEEEEEecCCcceeeccccc
Confidence            4555555  8999999999877644332    23445666666554 455555  558999999997543211      1


Q ss_pred             ---------EEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          398 ---------ELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       398 ---------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                               ...+|...|++++|+|++.+|+||+.||.|+|||+.+.+.+.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence                     123566789999999999999999999999999999887765543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.6e-27  Score=213.07  Aligned_cols=243  Identities=22%  Similarity=0.403  Sum_probs=196.5

Q ss_pred             eEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEcc
Q 012679          175 ELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVR  254 (458)
Q Consensus       175 ~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~  254 (458)
                      ++....+|...|+|++|  ||++||+|+.||+|+|||+.+++.+.++.+ |...|.+++|++++|++|+.||.|++|++.
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeecccceeecccccccccccccc
Confidence            34556678889998765  799999999999999999999999999987 999999999999999999999999999999


Q ss_pred             CCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          255 VRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       255 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      .+... .....+...  ...+.+....++++..++.+.+||.......   .....+..|...|..+.+.+   ..++++
T Consensus        84 ~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~---~~~~~~  154 (293)
T d1p22a2          84 TGEML-NTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDFDD---KYIVSA  154 (293)
T ss_dssp             SCCEE-EEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCC---EEEEEECCCSSCEEEEEEET---TEEEEE
T ss_pred             ccccc-ccccccccc--cccccccccceeecccccceeEeeccccccc---cccccccccccccccceecc---cccccc
Confidence            87653 333333332  3345567788999999999999998876542   22455677888888888765   344454


Q ss_pred             CCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcC
Q 012679          335 GGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSP  413 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~sp  413 (458)
                      +  .|+.|++||.++++.+..+... ..+..+.++  +..+++  |..|+.|++||+.+...+..+.+|...|..  +++
T Consensus       155 s--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~  226 (293)
T d1p22a2         155 S--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF  226 (293)
T ss_dssp             E--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC
T ss_pred             c--CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEE--ecCCCEEEEEecccceeeeeecccceeeee--ccc
Confidence            4  7999999999999999888654 456666664  556776  558999999999999999999999988865  556


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCc
Q 012679          414 DGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       414 dg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      ++.+|++|+.||.|++||+.....
T Consensus       227 ~~~~l~sg~~dg~i~iwd~~~~~~  250 (293)
T d1p22a2         227 DNKRIVSGAYDGKIKVWDLVAALD  250 (293)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             cceEEEEEcCCCEEEEEECCCCcc
Confidence            788999999999999999865443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.7e-27  Score=222.78  Aligned_cols=273  Identities=12%  Similarity=0.028  Sum_probs=205.9

Q ss_pred             eeccC--CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC--eEEEEeCCCceeeEEec
Q 012679          147 LDWGS--SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC--QVQLWDSTANRQLRTLR  222 (458)
Q Consensus       147 ~~~~~--~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg--~v~iwd~~~~~~~~~~~  222 (458)
                      -+|+|  +++++.+.+|.|++||+.++...   .+ .|...|.+++|+|||++|++++.+.  .|++||..+++..+ +.
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FE   82 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEE---EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CC
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEE---Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-ee
Confidence            34554  56777788899999999988753   33 5889999999999999998877654  79999998877654 44


Q ss_pred             CCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE----------CCCc
Q 012679          223 GGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG----------NDNL  290 (458)
Q Consensus       223 ~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~----------~dg~  290 (458)
                      . |...|.+++|  ++++|++++.++.+++|++.+... ...+..|...+.+++|+|||++|+.++          .++.
T Consensus        83 ~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          83 E-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             C-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             C-CCceEEeeeecccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            4 9999999999  578999999999999999987764 567788899999999999999998654          3456


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee-------EEEeC-----
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL-------NSVDT-----  358 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~-------~~~~~-----  358 (458)
                      +++||+....       ...+..|...+..++|+|++..++..+   .|+.+.+||.......       ..+..     
T Consensus       161 ~~v~d~~~~~-------~~~~~~~~~~~~~~~~spdg~~l~~~s---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  230 (360)
T d1k32a3         161 IHVYDMEGRK-------IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP  230 (360)
T ss_dssp             EEEEETTTTE-------EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred             eeeeccccCc-------eeeecccccccccccccCCCCEEEEEe---CCCceEcccccccceeeccccceEEEecccCcc
Confidence            9999988764       344556778889999999877666544   7889999987554321       11110     


Q ss_pred             --------------------------------CCCeEEEEEcCCCCeEEE-----------EecCCCCcEEEEeCCCcee
Q 012679          359 --------------------------------GSQVCALLWNKNERELLS-----------SHGFTQNQLTLWKYPSMVK  395 (458)
Q Consensus       359 --------------------------------~~~v~~~~~s~~~~~l~~-----------~~g~~d~~i~iwd~~~~~~  395 (458)
                                                      ......+...+++...+.           +.+..++.|++||+.+++.
T Consensus       231 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  310 (360)
T d1k32a3         231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV  310 (360)
T ss_dssp             CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred             ccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE
Confidence                                            011223333333322222           1134578899999988754


Q ss_pred             eEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccc
Q 012679          396 MAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVIS  440 (458)
Q Consensus       396 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~  440 (458)
                      .    .|.+.|.+++|||||++|++++.||.|++||+..++....
T Consensus       311 ~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         311 T----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT  351 (360)
T ss_dssp             E----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred             E----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence            2    3456699999999999999999999999999988776544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.2e-26  Score=210.81  Aligned_cols=237  Identities=14%  Similarity=0.124  Sum_probs=185.3

Q ss_pred             eeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEE
Q 012679          174 SELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINND  252 (458)
Q Consensus       174 ~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd  252 (458)
                      +.+.++.+|..+|++++|+|    |++|+.||+|++||+.++.     . .|...|.++++. +..+++++.|++|++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~-~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----Q-DHSNLIVSLDNSKAQEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----C-CCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----C-CCCCCEEEEEecCCCeEEEEeecccccccc
Confidence            45788999999999999987    9999999999999987653     2 399999999995 67889999999999999


Q ss_pred             ccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          253 VRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       253 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      +....        ....+..+.+++++..++++ .++.+.+|+......      +..+.. ...+  .++++++..+++
T Consensus        74 ~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~-~~~~--~~~~~~~~~~~v  135 (287)
T d1pgua2          74 ITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI------IKSVRL-NSPG--SAVSLSQNYVAV  135 (287)
T ss_dssp             EEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE------EEEEEC-SSCE--EEEEECSSEEEE
T ss_pred             ccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceee------eeeccc-ccee--eeeeccCcceee
Confidence            75321        23457778898888776665 566788999877654      444433 2333  455666566666


Q ss_pred             EeCCCCCCeEEEEECCCCCeeEEEe--CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeE-EEeCCCCcEEEE
Q 012679          333 TGGGGGDRCIKFWNTHTGACLNSVD--TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMA-ELSGHTSRVLFM  409 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~-~~~~h~~~V~~l  409 (458)
                      .+.  .++.+++|++...+....+.  ....+.+++|+|++.+|++  |..+|.|++||+.+++.+. .+.+|..+|.++
T Consensus       136 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~  211 (287)
T d1pgua2         136 GLE--EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAI  211 (287)
T ss_dssp             EET--TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSSCEEEE
T ss_pred             ecc--ccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc--ccccccccceeeccccccccccccccccccee
Confidence            553  55689999998776665554  3567999999999999998  5589999999999988765 467899999999


Q ss_pred             EEcCC----------CCEEEEEeCCCcEEEEecCCCCcccccC
Q 012679          410 AQSPD----------GCTVASAAADETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       410 ~~spd----------g~~l~s~s~Dg~i~iW~~~~~~~~~~~~  442 (458)
                      +|+|+          +.+|++|+.|++|+||++..+.+.....
T Consensus       212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~  254 (287)
T d1pgua2         212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL  254 (287)
T ss_dssp             EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             eecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe
Confidence            99874          5689999999999999997755444433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3.6e-24  Score=197.57  Aligned_cols=270  Identities=14%  Similarity=0.144  Sum_probs=214.3

Q ss_pred             EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE-EEecCCeEEEEeCCCceeeEEecCCCcccEEEEE
Q 012679          155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA-IGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLA  233 (458)
Q Consensus       155 la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la-~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~  233 (458)
                      ++.+.+++|.+||+++++.  +.++.. ...+..++|+|||++|+ ++..++.|++||+.+++.+..+.. +. .+..+.
T Consensus         6 V~~~~~~~v~v~D~~t~~~--~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-~~-~~~~~~   80 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKV--TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-GS-SPQGVA   80 (301)
T ss_dssp             EEETTTTEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-SS-SEEEEE
T ss_pred             EEECCCCEEEEEECCCCeE--EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-cc-cccccc
Confidence            4556789999999999987  444443 34588999999999885 566789999999999999999885 43 467788


Q ss_pred             eC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEE-EECCCcEEEEeCCCCCCCCcceeee
Q 012679          234 WN--NH-ILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLAS-GGNDNLLHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       234 ~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~  309 (458)
                      |+  +. .++++..++.+.+|+..++.. ...+.. .....++.|+|+++.++. +..++.+.+|+..+...      ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~------~~  152 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV------IN  152 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE------EE
T ss_pred             cccccccccccccccceeeeccccccee-eeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccce------ee
Confidence            84  44 556667788999999987654 444443 456778999999998755 45678899999887764      44


Q ss_pred             eecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEe-cCCCCcEEEE
Q 012679          310 RLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSH-GFTQNQLTLW  388 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-g~~d~~i~iw  388 (458)
                      .+. +...+..++++|++..++++..  .++.+.+|+....+....+.....+..+.+++++..++++. +..++.|.+|
T Consensus       153 ~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         153 TVS-VGRSPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             EEE-CCSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             ecc-cCCCceEEEeeccccceeeecc--cccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeee
Confidence            443 3455788999999888888765  67889999999998888888888899999999999987654 3456789999


Q ss_pred             eCCCceeeEEEeCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCCccccc
Q 012679          389 KYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNVFGAPQVISK  441 (458)
Q Consensus       389 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iW~~~~~~~~~~~  441 (458)
                      |..+++.+..+..+ ..+.+++|+|||++| ++++.|++|++||+.+++.+.+.
T Consensus       230 D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         230 DTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            99999999888754 467999999999987 57778999999999988766554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=6.7e-23  Score=199.96  Aligned_cols=274  Identities=8%  Similarity=0.020  Sum_probs=191.9

Q ss_pred             EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE--ecC--CCcccEE
Q 012679          155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT--LRG--GHRSRVG  230 (458)
Q Consensus       155 la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~--~~~--~~~~~v~  230 (458)
                      ++...||.|+|||+.+++.  +.++..| ..+..++|||||++|++++.||.|++||+.+++....  +..  +|...+.
T Consensus        36 V~~~~dg~v~vwD~~t~~~--~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKI--VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEETTTTEEEEEETTTCSE--EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            4455689999999999988  6667765 4699999999999999999999999999998875433  331  2445555


Q ss_pred             EEEe--CCCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccc-----------eEeEEEcCCCCEEEEEEC-CCcEEEEe
Q 012679          231 SLAW--NNHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQE-----------VCGLKWSASGQQLASGGN-DNLLHIWD  295 (458)
Q Consensus       231 ~l~~--~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~-----------v~~l~~spd~~~l~sg~~-dg~i~iwd  295 (458)
                      +++|  +|+++ +++..++.+.+||..+... ...+..|...           ...+.+++++..++.... .+.+.+++
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            6666  56765 5556889999999988764 4444444433           344555666665554443 34555555


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee----------------------
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL----------------------  353 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~----------------------  353 (458)
                      .......     ......+...+..++|+|++..++++..  .+..+.+++..+++.+                      
T Consensus       192 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         192 YKDIDNL-----TVTSIGAAPFLADGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             CSSSSSC-----EEEEEECCSSEEEEEECTTSCEEEEEET--TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             eccccce-----eeEEeccCCccEeeeECCCCcEEEeeee--cccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            5443321     2233356777888999998888877765  5566666666554432                      


Q ss_pred             --------------------------------EEEeC-CCCeEEEEEcCCCCeEEEEe-----cCCCCcEEEEeCCCcee
Q 012679          354 --------------------------------NSVDT-GSQVCALLWNKNERELLSSH-----GFTQNQLTLWKYPSMVK  395 (458)
Q Consensus       354 --------------------------------~~~~~-~~~v~~~~~s~~~~~l~~~~-----g~~d~~i~iwd~~~~~~  395 (458)
                                                      ..+.. ...+..++|+|+++++++..     |..+++|+|||+.+++.
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~  344 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA  344 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence                                            22222 34478899999999999632     33468999999999887


Q ss_pred             eEEEe---------CCCCcEEEEEEcCCCCEEE-EE----eCCCcEEEEecCCCCccc
Q 012679          396 MAELS---------GHTSRVLFMAQSPDGCTVA-SA----AADETLRFWNVFGAPQVI  439 (458)
Q Consensus       396 ~~~~~---------~h~~~V~~l~~spdg~~l~-s~----s~Dg~i~iW~~~~~~~~~  439 (458)
                      ..++.         .|..+|.+++|||||++|+ ++    +.||.|+|||..+.+...
T Consensus       345 ~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~  402 (426)
T d1hzua2         345 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  402 (426)
T ss_dssp             CCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred             CeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence            66542         4567799999999999774 33    357889999998887544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.3e-22  Score=189.71  Aligned_cols=275  Identities=14%  Similarity=0.072  Sum_probs=200.5

Q ss_pred             CeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEE-EEecCCeEEEEeCCCceeeEEecCCCcc----
Q 012679          153 NVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIA-IGLNNCQVQLWDSTANRQLRTLRGGHRS----  227 (458)
Q Consensus       153 ~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la-~g~~dg~v~iwd~~~~~~~~~~~~~~~~----  227 (458)
                      .+++++.|+.|+|||+++++......+..+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+.. +..    
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL-STPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC-CBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-CCCcccc
Confidence            47889999999999999998855555555666789999999999874 567899999999999999888775 332    


Q ss_pred             -cEEEEEe--CCCeEEEEe------------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          228 -RVGSLAW--NNHILTTGG------------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       228 -~v~~l~~--~~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                       .+..++|  ++..++++.            .++.+.+||..+... ...+. +...+.+++|+|||+++++++.  .+.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~  157 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITMLAWARDGSKLYGLGR--DLH  157 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEEEESS--SEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEEEEcCCCCEEEEEcC--Ccc
Confidence             2335666  467777665            457788999987664 34444 3456889999999999999865  477


Q ss_pred             EEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEE-------------EEeC--------CCCCCeEEEEECCCCC
Q 012679          293 IWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLL-------------ATGG--------GGGDRCIKFWNTHTGA  351 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll-------------~s~~--------g~~d~~i~lwd~~~~~  351 (458)
                      +||......      ...+..+.. .....+.|++..+.             ....        +..++.+.+||..++.
T Consensus       158 ~~d~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         158 VMDPEAGTL------VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             EEETTTTEE------EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             eeeeecCcE------EEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence            899877654      222221111 11111111111100             0000        1245579999999988


Q ss_pred             eeEEE--eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679          352 CLNSV--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF  429 (458)
Q Consensus       352 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i  429 (458)
                      .....  .....+..+.+++++..++..    ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v  305 (337)
T d1pbyb_         231 MAMREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred             EEEEEecCCCcceEEEEecccceEEEEc----cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            66543  445678889999999998873    5789999999999998885 5677899999999999999999999999


Q ss_pred             EecCCCCcccccCCC
Q 012679          430 WNVFGAPQVISKSAP  444 (458)
Q Consensus       430 W~~~~~~~~~~~~~~  444 (458)
                      ||+.+.+.+.+...+
T Consensus       306 ~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         306 YDAETLEKKGQVDLP  320 (337)
T ss_dssp             EETTTCCEEEEEECG
T ss_pred             EECCCCcEEEEEECC
Confidence            999998877765443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.7e-21  Score=190.14  Aligned_cols=272  Identities=11%  Similarity=0.030  Sum_probs=188.0

Q ss_pred             EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee--eEEecC--CCcccEE
Q 012679          155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ--LRTLRG--GHRSRVG  230 (458)
Q Consensus       155 la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~--~~~~~~--~~~~~v~  230 (458)
                      ++.+.+|.|.|||..++++  +..+..+ ..+..++|||||++|++++.||.|.+||+.+++.  ...+..  +|...+.
T Consensus        36 v~~~d~g~v~v~D~~t~~v--~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEI--KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEETTTTEEEEEETTTCCE--EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCcE--EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            5666789999999999998  6666655 4699999999999999999999999999988764  333332  2444455


Q ss_pred             EEEe--CCCeE-EEEeCCCcEEEEEccCCCeeEEEEcc-----------cccceEeEEEcCCCCEEE-EEECCCcEEEEe
Q 012679          231 SLAW--NNHIL-TTGGMDGLIINNDVRVRDHIVETYRG-----------HNQEVCGLKWSASGQQLA-SGGNDNLLHIWD  295 (458)
Q Consensus       231 ~l~~--~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l~-sg~~dg~i~iwd  295 (458)
                      +..|  +|++| ++++.++.|.+||..+++. +..+..           +......+.++|++..++ +...++.|.+||
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            5555  57765 7788899999999988764 333332           344566788999998764 556689999999


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC----------------
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG----------------  359 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~----------------  359 (458)
                      ........    +..+ .+...+..++|+|++.++++++.  .++.+.++|..+++.+..+..+                
T Consensus       192 ~~~~~~~~----~~~i-~~g~~~~~~~~spdg~~~~va~~--~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         192 YTDLNNLK----TTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             TTCSSEEE----EEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             ccCCCcce----EEEE-cccCccccceECCCCCEEEEecc--ccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            87765411    2222 34566789999999998888876  7788999998877655443211                


Q ss_pred             -----------------------------CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc-----------------
Q 012679          360 -----------------------------SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM-----------------  393 (458)
Q Consensus       360 -----------------------------~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~-----------------  393 (458)
                                                   ..+....+++++..++++  ..++..++|...+.                 
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~--s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~  342 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK--THPNSQYLYVDATLNPEAEISGSVAVFDIKA  342 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE--CCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred             CCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEE--ecCCccceeecccCCCCCCeeeEEEEEechh
Confidence                                         123444555555544442  23444444432110                 


Q ss_pred             -------eee--------EEEeCCCCcEEEEEEcCCCCEEEEEe-----CCCcEEEEecCCCCccc
Q 012679          394 -------VKM--------AELSGHTSRVLFMAQSPDGCTVASAA-----ADETLRFWNVFGAPQVI  439 (458)
Q Consensus       394 -------~~~--------~~~~~h~~~V~~l~~spdg~~l~s~s-----~Dg~i~iW~~~~~~~~~  439 (458)
                             ..+        ..+..|..+|.+++|||||++|+.+.     .||.|+|||-.+.+...
T Consensus       343 la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         343 MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             hcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence                   000        11235677899999999999886553     46889999998887643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=4.3e-22  Score=188.16  Aligned_cols=254  Identities=9%  Similarity=0.076  Sum_probs=185.0

Q ss_pred             cccceeeccCCC--eEEEEcCC--EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCcee
Q 012679          142 YYLNLLDWGSSN--VLAIALGS--TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQ  217 (458)
Q Consensus       142 ~~~~~~~~~~~~--~la~~~d~--~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~  217 (458)
                      ..+.++.|+++.  +++++.++  .|++||+++++.   ..+..|...|.+++|+|+|++|++++.++.+.+|++.+++.
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~---~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  119 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA---EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP  119 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE---EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE---EEeeCCCceEEeeeecccccccceeccccccccccccccce
Confidence            357789999843  55566553  799999999875   45678899999999999999999999999999999999998


Q ss_pred             eEEecCCCcccEEEEEe--CCCeEEEEe----------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEE
Q 012679          218 LRTLRGGHRSRVGSLAW--NNHILTTGG----------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       218 ~~~~~~~~~~~v~~l~~--~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                      ...+.. |...+.+++|  ++.+|+.+.          .++.+++||+.++..  ..+..|...+..+.|+|||++|+++
T Consensus       120 ~~~~~~-~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         120 TVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             EEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             eeeeec-ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce--eeecccccccccccccCCCCEEEEE
Confidence            888876 8889999999  477887553          345689999987653  4555677888999999999999999


Q ss_pred             ECCCcEEEEeCCCCCCCCc--cee-----------------------------------eeeecccccceeEEEecCCCC
Q 012679          286 GNDNLLHIWDRSMASSNSV--TQW-----------------------------------LHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~--~~~-----------------------------------~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      +.|+.+.+||.........  .+.                                   +..+....+....+...+++.
T Consensus       197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1k32a3         197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI  276 (360)
T ss_dssp             ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred             eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc
Confidence            9999999998654321000  000                                   000011111222333333211


Q ss_pred             cEEEE----------eCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679          329 NLLAT----------GGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE  398 (458)
Q Consensus       329 ~ll~s----------~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~  398 (458)
                      ..+..          .++..++.|++||+.+++....   ...+.+++|+|||++|++  +..||.|++||+.+++...+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~--~~~Dg~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMV--RKDDGKIYTFPLEKPEDERT  351 (360)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEE--EETTSCEEEEESSCTTSCEE
T ss_pred             eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEE--EECCCeEEEEECCCCCcceE
Confidence            11111          1234788999999998875433   245899999999999998  44799999999999988887


Q ss_pred             EeCCCCcE
Q 012679          399 LSGHTSRV  406 (458)
Q Consensus       399 ~~~h~~~V  406 (458)
                      +..+..++
T Consensus       352 ~~~d~~~~  359 (360)
T d1k32a3         352 VETDKRPL  359 (360)
T ss_dssp             CCCCSSCE
T ss_pred             EEeccccc
Confidence            76665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.9e-20  Score=171.55  Aligned_cols=278  Identities=11%  Similarity=0.149  Sum_probs=191.3

Q ss_pred             EEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEec--CCCcccEEE
Q 012679          155 LAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLR--GGHRSRVGS  231 (458)
Q Consensus       155 la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~--~~~~~~v~~  231 (458)
                      ++++.++.|++|++.+.....+.....|.+.|..|+|+|||++|++++ .|+.|++|++........+.  ..+...+..
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence            555678999999987554323333335678899999999999996655 58999999987654332221  114455667


Q ss_pred             EEe--CCCeEEEEeC-CCcEEEEEccCCCee-EEEEcccccceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcce
Q 012679          232 LAW--NNHILTTGGM-DGLIINNDVRVRDHI-VETYRGHNQEVCGLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       232 l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~  306 (458)
                      ++|  ++++|++++. ++.|.+|+....... ......+...+.++.++|+++++++++. +..|.+|+...........
T Consensus        88 l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  167 (333)
T d1ri6a_          88 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD  167 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred             EEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeee
Confidence            888  4678888775 678899988765432 2334456777889999999999888775 4579999977655421111


Q ss_pred             eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC----eeEEEe-------CCCCeEEEEEcCCCCeEE
Q 012679          307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA----CLNSVD-------TGSQVCALLWNKNERELL  375 (458)
Q Consensus       307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~----~~~~~~-------~~~~v~~~~~s~~~~~l~  375 (458)
                      ..............++|++++..++.+..  ..+...+|+.....    ....+.       .......+.+++++++++
T Consensus       168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             ceeeeeecCCCccEEEEeccceeEEeecc--ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence            11112233455678999998888877765  67788888865432    112221       224467889999999888


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEE---eCCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAEL---SGHTSRVLFMAQSPDGCTVASAAA-DETLRFWNVFGA  435 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~---~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iW~~~~~  435 (458)
                      ++ +..++.+.+|++........+   ..+...+.+++|+|||++|++++. ++.|++|++...
T Consensus       246 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         246 AC-DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             EE-ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             ee-cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            76 456789999998765433333   234456788999999999877764 689999977543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4.4e-20  Score=173.00  Aligned_cols=275  Identities=10%  Similarity=-0.031  Sum_probs=194.1

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEE-EecCCeEEEEeCCCceeeEEecCCCc----
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLRTLRGGHR----  226 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~-g~~dg~v~iwd~~~~~~~~~~~~~~~----  226 (458)
                      +.+++++.++.|.+||+.++++.....+ .|...+.+++|+|||+++++ +..++.|.+||+.+++.+..+.....    
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~   87 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   87 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             cEEEEEcCCCEEEEEECCCCCEEEEEEc-CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccccc
Confidence            4578888899999999999987433333 34566889999999998755 55789999999999998887764221    


Q ss_pred             -ccEEEEEe--CCCeEEEEe------------CCCcEEEEEccCCCeeEEEEc--ccccceEeEEEcCCCCEEEEEECCC
Q 012679          227 -SRVGSLAW--NNHILTTGG------------MDGLIINNDVRVRDHIVETYR--GHNQEVCGLKWSASGQQLASGGNDN  289 (458)
Q Consensus       227 -~~v~~l~~--~~~~l~sg~------------~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~sg~~dg  289 (458)
                       ..+..++|  ++.++++++            .++.+.+||..++... ..+.  .....+..+.+++++..++++   +
T Consensus        88 ~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  163 (346)
T d1jmxb_          88 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFPMPRQVYLMRAADDGSLYVAG---P  163 (346)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-CCSEEEECCSSCCCEEECTTSCEEEES---S
T ss_pred             CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee-eEEEeeeccCceEEEEecCCCEEEEeC---C
Confidence             22345666  567776664            4677888988765432 1111  123456667778888766653   5


Q ss_pred             cEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeC-----------------------CCCCCeEEEEE
Q 012679          290 LLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGG-----------------------GGGDRCIKFWN  346 (458)
Q Consensus       290 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~-----------------------g~~d~~i~lwd  346 (458)
                      .+.+|+..+...      +..+..+ .....+.++|++..+++...                       +..+..+.+||
T Consensus       164 ~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         164 DIYKMDVKTGKY------TVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             SEEEECTTTCCE------EEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             cceEEEccCCCE------EEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            689999877654      3343322 22334444554333322211                       11345688899


Q ss_pred             CCCCCeeEEE--eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC
Q 012679          347 THTGACLNSV--DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD  424 (458)
Q Consensus       347 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D  424 (458)
                      ..++......  .....+..+.+++++..++...   .+.|.+||..+++.+..+. +...+.+++|+|||++|++++.|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d  312 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTF  312 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEec---CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCC
Confidence            9888766544  3456788899999999888753   5689999999999988876 45578999999999999999999


Q ss_pred             CcEEEEecCCCCcccccC
Q 012679          425 ETLRFWNVFGAPQVISKS  442 (458)
Q Consensus       425 g~i~iW~~~~~~~~~~~~  442 (458)
                      +.|++||+.+.+.+.+..
T Consensus       313 ~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         313 NDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEECccCCEEEEEE
Confidence            999999999888776544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=1.8e-18  Score=158.66  Aligned_cols=242  Identities=15%  Similarity=0.144  Sum_probs=186.2

Q ss_pred             cceeeccCC-C-eE-EEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEE-EecCCeEEEEeCCCceeeE
Q 012679          144 LNLLDWGSS-N-VL-AIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAI-GLNNCQVQLWDSTANRQLR  219 (458)
Q Consensus       144 ~~~~~~~~~-~-~l-a~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~-g~~dg~v~iwd~~~~~~~~  219 (458)
                      ...++++++ + ++ +...++.|++||+.+++.  +..+..+. .+..++|++++.++++ +..++.+.+|+..+++...
T Consensus        34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--eeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            345777763 3 43 344678999999999876  55666554 5789999999987665 4566789999999999888


Q ss_pred             EecCCCcccEEEEEe--CCCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-CcEEEEe
Q 012679          220 TLRGGHRSRVGSLAW--NNHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-NLLHIWD  295 (458)
Q Consensus       220 ~~~~~~~~~v~~l~~--~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-g~i~iwd  295 (458)
                      .+.  +.....++.+  ++..+ +++..++.+.+|+..+... ...+.. ...+..+.++|+++.+++++.+ +.+.+|+
T Consensus       111 ~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         111 TVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccce-eeeccc-CCCceEEEeeccccceeeeccccccccccc
Confidence            887  4556677777  45554 5666788999999987664 344433 4557889999999999888765 5566777


Q ss_pred             CCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEE
Q 012679          296 RSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELL  375 (458)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  375 (458)
                      ......      ...+ .....+..++|++++..+++++.+..++.|++||..+++.+..+..+..+..++|+|+|++|+
T Consensus       187 ~~~~~~------~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         187 TVTNSV------IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             TTTTEE------EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             ccceee------eecc-cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEE
Confidence            665433      3333 334567789999999888777655577899999999999999999988999999999999987


Q ss_pred             EEecCCCCcEEEEeCCCceeeEEEe
Q 012679          376 SSHGFTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       376 ~~~g~~d~~i~iwd~~~~~~~~~~~  400 (458)
                      ++ +..++.|.+||+.+++.+.++.
T Consensus       260 va-~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         260 VA-LSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EE-ETTTTEEEEEETTTTEEEEEEE
T ss_pred             EE-ECCCCeEEEEECCCCeEEEEEe
Confidence            65 4478999999999999998885

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=8.8e-20  Score=177.54  Aligned_cols=233  Identities=12%  Similarity=0.081  Sum_probs=172.4

Q ss_pred             EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE----EEEcccccce
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV----ETYRGHNQEV  270 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~h~~~v  270 (458)
                      ++++...||.|+|||+.+++.+.++.. | ..+..++|  +|++|++++.||.|++||+.+++...    ....+|...+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            557788899999999999999999986 4 45888999  58999999999999999998876422    2223677778


Q ss_pred             EeEEEcCCCCEEEE-EECCCcEEEEeCCCCCCCCcceeeeeeccccc-----------ceeEEEecCCCCcEEEEeCCCC
Q 012679          271 CGLKWSASGQQLAS-GGNDNLLHIWDRSMASSNSVTQWLHRLEEHTS-----------AVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       271 ~~l~~spd~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      .+++|+|||+++++ +..++.+.+||......      ...+..|..           ....++.++++..++.+..  .
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~--~  183 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK--E  183 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCE------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET--T
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccce------eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC--C
Confidence            88889999998755 45789999999988765      344433333           3455666666666666554  4


Q ss_pred             CCeEEEEECCCCC--eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC------------------------
Q 012679          339 DRCIKFWNTHTGA--CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPS------------------------  392 (458)
Q Consensus       339 d~~i~lwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~------------------------  392 (458)
                      .+.+.+++...+.  .+..+.....+..+.|+|++++++++. ..++.+.+++..+                        
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA-NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEE-TTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeee-ecccceeeeecccccEEEEeccCCcccccceeeeecC
Confidence            5677777776655  334556677889999999999887763 2333444443322                        


Q ss_pred             ------------------------------ceeeEEEeCCCCcEEEEEEcCCCCEEEE-------EeCCCcEEEEecCCC
Q 012679          393 ------------------------------MVKMAELSGHTSRVLFMAQSPDGCTVAS-------AAADETLRFWNVFGA  435 (458)
Q Consensus       393 ------------------------------~~~~~~~~~h~~~V~~l~~spdg~~l~s-------~s~Dg~i~iW~~~~~  435 (458)
                                                    ++...++.+|...+..++|+|||++|++       ++.|++|+|||+.++
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                                          2445567788889999999999999994       556899999999887


Q ss_pred             Ccccc
Q 012679          436 PQVIS  440 (458)
Q Consensus       436 ~~~~~  440 (458)
                      +...+
T Consensus       343 ~~~~~  347 (426)
T d1hzua2         343 DAKYQ  347 (426)
T ss_dssp             TSCCE
T ss_pred             CcCeE
Confidence            76543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=8.5e-18  Score=159.64  Aligned_cols=275  Identities=11%  Similarity=-0.060  Sum_probs=183.6

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCCcccE
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      .+.|++||..+++.  +.++..+..  ..++|+|||++|+++.          .++.|.+||..+++.+..+.. +....
T Consensus        46 ~~~v~v~D~~tg~~--~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~  120 (373)
T d2madh_          46 IIQQWVLDAGSGSI--LGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-PDAPR  120 (373)
T ss_pred             CceEEEEECCCCCE--EEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec-CCcce
Confidence            46799999999987  555655443  3799999999999875          357899999999999888775 44443


Q ss_pred             EEE-------Ee--CCCeEEEE--eCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEE-EEEECCCcEEEEeCC
Q 012679          230 GSL-------AW--NNHILTTG--GMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQL-ASGGNDNLLHIWDRS  297 (458)
Q Consensus       230 ~~l-------~~--~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~  297 (458)
                      ..+       .|  ++..++..  ..++.+.+|+......     ..+.....++.++|+++.+ ++.+.|+.+.+||..
T Consensus       121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence            332       22  44433333  3345666777654332     2233456678899998765 678899999999988


Q ss_pred             CCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-------------CCCeEE
Q 012679          298 MASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-------------GSQVCA  364 (458)
Q Consensus       298 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------------~~~v~~  364 (458)
                      ................+......+.+.+++ .+++. +  .++.+.+|+..++........             ......
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (373)
T d2madh_         196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWP-V--YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ  271 (373)
T ss_pred             CceeeEEEeeeccccCccceeeeEEECCCc-eEEEe-c--CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCccee
Confidence            766521111001111122233445566543 33333 3  788999999888764332211             123445


Q ss_pred             EEEcCCCCeEEEEe--------cCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCE--EEEEeCCCcEEEEecCC
Q 012679          365 LLWNKNERELLSSH--------GFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCT--VASAAADETLRFWNVFG  434 (458)
Q Consensus       365 ~~~s~~~~~l~~~~--------g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~--l~s~s~Dg~i~iW~~~~  434 (458)
                      +.+++++..++...        ...++.+.+||..+++.+..+. +...+.+++|+|||+.  +++++.|++|++||+.+
T Consensus       272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            67777777665432        2346789999999999998875 6677899999999984  47889999999999999


Q ss_pred             CCcccccCCCCCCCC
Q 012679          435 APQVISKSAPKPNRE  449 (458)
Q Consensus       435 ~~~~~~~~~~~~~~~  449 (458)
                      ++.+......-..+.
T Consensus       351 g~~~~~~~~~g~~P~  365 (373)
T d2madh_         351 GDQDQSTVELGSGPQ  365 (373)
T ss_pred             CCEEEEECCCCCCCc
Confidence            998877654444333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.7e-18  Score=168.62  Aligned_cols=194  Identities=12%  Similarity=0.001  Sum_probs=153.5

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCee-EE---EEcccc
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHI-VE---TYRGHN  267 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~-~~---~~~~h~  267 (458)
                      +.-++++.+.+|+|.|||..+++.+..+.. + ..+..++|  +|+++++++.||.|.+||+.+.+.. ..   ...+|.
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC-S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            333468888999999999999999999986 4 35889999  5899999999999999999876532 22   233566


Q ss_pred             cceEeEEEcCCCCEE-EEEECCCcEEEEeCCCCCCCCcceeeeeecc-----------cccceeEEEecCCCCcEEEEeC
Q 012679          268 QEVCGLKWSASGQQL-ASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-----------HTSAVKAIAWCPFQSNLLATGG  335 (458)
Q Consensus       268 ~~v~~l~~spd~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------h~~~v~~l~~~p~~~~ll~s~~  335 (458)
                      +.+.+..|+|||++| ++++.++.|.+||..+++.      +..+..           +.....++.++|++..++++..
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc------eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            777778889999986 6788899999999988765      333322           3445667899999888888876


Q ss_pred             CCCCCeEEEEECCCCCee--EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE
Q 012679          336 GGGDRCIKFWNTHTGACL--NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE  398 (458)
Q Consensus       336 g~~d~~i~lwd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~  398 (458)
                        .++.|.+||..+++..  ..+..+..+..+.|+|+++++++++. .++.+.++|..+.+.+..
T Consensus       183 --~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~-~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         183 --ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             --TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-GGTEEEEEETTTTEEEEE
T ss_pred             --cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc-ccceEEEeecccceEEEE
Confidence              7899999999988754  45677788999999999999988754 577888898877665544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.5e-16  Score=149.51  Aligned_cols=263  Identities=11%  Similarity=0.023  Sum_probs=175.2

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEE----------ecCCeEEEEeCCCceeeEEecCC--Cc-
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIG----------LNNCQVQLWDSTANRQLRTLRGG--HR-  226 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g----------~~dg~v~iwd~~~~~~~~~~~~~--~~-  226 (458)
                      .+.|++||..+++.  +.++..+.  +..++|+|||++|++.          ..+|.|.+||+.+++.+..+...  +. 
T Consensus        27 ~~~v~v~D~~tg~~--~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~  102 (355)
T d2bbkh_          27 VTQQFVIDGEAGRV--IGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  102 (355)
T ss_dssp             SEEEEEEETTTTEE--EEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             cCeEEEEECCCCcE--EEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence            46899999999987  44555443  3479999999988765          34789999999999988876531  11 


Q ss_pred             ---ccEEEEEe--CCCeEEEE--eCCCcEEEEEccCCCeeEEEEccccc-------ceEeEEEcCCCCEEEEEE-CCCcE
Q 012679          227 ---SRVGSLAW--NNHILTTG--GMDGLIINNDVRVRDHIVETYRGHNQ-------EVCGLKWSASGQQLASGG-NDNLL  291 (458)
Q Consensus       227 ---~~v~~l~~--~~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~h~~-------~v~~l~~spd~~~l~sg~-~dg~i  291 (458)
                         .....++|  ++..++.+  +.+..+.+|+..++.. +..+..+..       ....+.+++|++.++... .++.+
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~  181 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  181 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeE
Confidence               11234556  56766665  4567889999987654 344433221       223355566666554432 23444


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEE--EeC-----------
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNS--VDT-----------  358 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~--~~~-----------  358 (458)
                      .+++......           .+...+....+.+++..++.+ +  .++.+++|++..+.....  ...           
T Consensus       182 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (355)
T d2bbkh_         182 EITHTEVFHP-----------EDEFLINHPAYSQKAGRLVWP-T--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  247 (355)
T ss_dssp             EEEECCCCSC-----------TTSCBCSCCEEETTTTEEEEE-B--TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             EEEecccccc-----------eecceeeeccccCCCCeEEEe-c--CCCeEEEEecCCCcEEEEeccCCcccceEeeeee
Confidence            4444333221           233445566777766655554 3  789999999988764321  111           


Q ss_pred             CCCeEEEEEcCCCCeEEEEecC--------CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC--EEEEEeCCCcEE
Q 012679          359 GSQVCALLWNKNERELLSSHGF--------TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC--TVASAAADETLR  428 (458)
Q Consensus       359 ~~~v~~~~~s~~~~~l~~~~g~--------~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~i~  428 (458)
                      ......+.+++++..++.....        ..+.|.+||..+++.+..+. +...+.+++|+|||+  ++++++.|++|+
T Consensus       248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~  326 (355)
T d2bbkh_         248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLY  326 (355)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEE
Confidence            1223458899999988875422        13579999999999988886 345688999999997  456777899999


Q ss_pred             EEecCCCCcccccC
Q 012679          429 FWNVFGAPQVISKS  442 (458)
Q Consensus       429 iW~~~~~~~~~~~~  442 (458)
                      +||+.+++.+.+..
T Consensus       327 v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         327 IHDAESGEELRSVN  340 (355)
T ss_dssp             EEETTTCCEEEEEC
T ss_pred             EEECCCCCEEEEEe
Confidence            99999998776654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.7e-16  Score=147.48  Aligned_cols=238  Identities=13%  Similarity=0.107  Sum_probs=169.8

Q ss_pred             cceeeccCC-C-eEE-EEcCCEEEEEECCCCCeeeEEEecCCC-----CCEEEEEEcCCCCEEEEEec------------
Q 012679          144 LNLLDWGSS-N-VLA-IALGSTVYLWDASDGTTSELVTVDDEN-----GPVTSVNWAPDGRHIAIGLN------------  203 (458)
Q Consensus       144 ~~~~~~~~~-~-~la-~~~d~~v~iwd~~~~~~~~~~~~~~h~-----~~V~~v~~s~~g~~la~g~~------------  203 (458)
                      ...+.++++ + +++ ++.++.|++||+.+++.  +..+..+.     ..+..++|+|++++++++..            
T Consensus        36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             ccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            455777763 4 433 34689999999999987  34443332     23457899999999988763            


Q ss_pred             CCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC-
Q 012679          204 NCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ-  280 (458)
Q Consensus       204 dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~-  280 (458)
                      ++.+.+||..+++.+..+.  +...+.+++|  ++.++++++.  .+.+||..+... ...+..+... ....+++++. 
T Consensus       114 ~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~  187 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTL-VEDKPIQSWE-AETYAQPDVLA  187 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEE-EEEECSTTTT-TTTBCCCBCCC
T ss_pred             ccceeeccccCCeEEEecc--ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcE-EEEeecCCcc-ccceecCCcce
Confidence            5689999999999988887  4456777777  5788888865  467899887653 3333322211 1111222221 


Q ss_pred             -----------------------EEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC
Q 012679          281 -----------------------QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG  337 (458)
Q Consensus       281 -----------------------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~  337 (458)
                                             .+..+..++.+.+||...+...     ...+..+...+..++++|++..++.     
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----  257 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MREVRIMDVFYFSTAVNPAKTRAFG-----  257 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECTTSSEEEE-----
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE-----EEEecCCCcceEEEEecccceEEEE-----
Confidence                                   1112223456888888776541     3344567778888999997665543     


Q ss_pred             CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG  401 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~  401 (458)
                      .++.|++||+.+++.+..+.....+.+++|+|+|+++++  +..++.|.|||..+++.+.++.-
T Consensus       258 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v--~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EeCCCcEEEEECCCCcEEEEEEC
Confidence            367999999999999999999999999999999999998  45789999999999999998864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=6.5e-16  Score=145.17  Aligned_cols=263  Identities=12%  Similarity=0.046  Sum_probs=179.8

Q ss_pred             eeeccCC--CeEEE----------EcCCEEEEEECCCCCeeeEEEecC-C----CCCEEEEEEcCCCCEEEEEe--cCCe
Q 012679          146 LLDWGSS--NVLAI----------ALGSTVYLWDASDGTTSELVTVDD-E----NGPVTSVNWAPDGRHIAIGL--NNCQ  206 (458)
Q Consensus       146 ~~~~~~~--~~la~----------~~d~~v~iwd~~~~~~~~~~~~~~-h----~~~V~~v~~s~~g~~la~g~--~dg~  206 (458)
                      .+.|+++  .+++.          ..++.|++||..+++......... +    ......++|+++|++++++.  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            4677763  34443          336899999999998754443321 1    12345689999999988775  4568


Q ss_pred             EEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEE-----EcccccceEeEEEcCCCCE
Q 012679          207 VQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET-----YRGHNQEVCGLKWSASGQQ  281 (458)
Q Consensus       207 v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~h~~~v~~l~~spd~~~  281 (458)
                      +.+|+..+++.+..+.. +. ............+..+.||...++...........     ...+...+....+.+++..
T Consensus       131 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDV-PD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             EEEEETTTTEEEEEEEC-CS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             eeeeecCCCcEeeEEec-CC-cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCe
Confidence            99999999999888874 22 22222334455556666766666655443321111     1134445666788889999


Q ss_pred             EEEEECCCcEEEEeCCCCCCCCcceeeeeeccc----------ccceeEEEecCCCCcEEEEeCC-------CCCCeEEE
Q 012679          282 LASGGNDNLLHIWDRSMASSNSVTQWLHRLEEH----------TSAVKAIAWCPFQSNLLATGGG-------GGDRCIKF  344 (458)
Q Consensus       282 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~v~~l~~~p~~~~ll~s~~g-------~~d~~i~l  344 (458)
                      ++.++.++.+++|++.......    +.....+          ......+++++++..+++....       .....|.+
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKF----LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEE----CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             EEEecCCCeEEEEecCCCcEEE----EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            9999999999999998765411    1111111          1234568899988877765421       12357999


Q ss_pred             EECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679          345 WNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       345 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                      ||..+++.+..+..+..+.+++|+|+|+.++.+++..++.|.|||..+++.+.++.++......+.+.++
T Consensus       285 ~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         285 LDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             EeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            9999999999998888899999999998655444667899999999999999999877655555555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=1e-15  Score=142.73  Aligned_cols=248  Identities=10%  Similarity=0.043  Sum_probs=169.6

Q ss_pred             cccceeeccCC-C-eEEEE-cCCEEEEEECCCCCeeeEEEecCCC----CCEEEEEEcCCCCEEEEEe------------
Q 012679          142 YYLNLLDWGSS-N-VLAIA-LGSTVYLWDASDGTTSELVTVDDEN----GPVTSVNWAPDGRHIAIGL------------  202 (458)
Q Consensus       142 ~~~~~~~~~~~-~-~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~----~~V~~v~~s~~g~~la~g~------------  202 (458)
                      .....+.|+++ . +++++ .++.|++||+.+++...........    ..+..++|+|||++++++.            
T Consensus        40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~  119 (346)
T d1jmxb_          40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV  119 (346)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence            34567888874 3 33333 6799999999999874433332211    2356799999999998875            


Q ss_pred             cCCeEEEEeCCCceeeEEecCC-CcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          203 NNCQVQLWDSTANRQLRTLRGG-HRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .++.+.+||..+++....+... ....+..+.+ ++..++..+  +.+.+|++.+... ...+..+ .....+.++|++.
T Consensus       120 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~  195 (346)
T d1jmxb_         120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKY-TVALPLR-NWNRKGYSAPDVL  195 (346)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCE-EEEECST-TCCCTTBCCCBCC
T ss_pred             CcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCE-EEEEecC-CCccceEEecccc
Confidence            3678999998887765444320 2223444444 233333333  5688999887664 3444333 2233444455444


Q ss_pred             EE--------------------------EEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEe
Q 012679          281 QL--------------------------ASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATG  334 (458)
Q Consensus       281 ~l--------------------------~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~  334 (458)
                      .+                          +++..++.+.+||.......     ......|...+..+.+++++..+++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1jmxb_         196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-----TQEFADLTELYFTGLRSPKDPNQIYGV  270 (346)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-----EEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred             EEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE-----EEEeecccceeEEEEEeCCCCEEEEec
Confidence            32                          33344556777887765541     334556778888999999888876653


Q ss_pred             CCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCC
Q 012679          335 GGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTS  404 (458)
Q Consensus       335 ~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~  404 (458)
                          ++.|.+||..+++.+..+..+..+.+++|+|+|+.+++  |..++.|+|||..+++.+.+++.+.+
T Consensus       271 ----~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v--~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         271 ----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             ----CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEECccCCEEEEEECCCC
Confidence                56899999999999999998889999999999999998  44789999999999999999875443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=1.5e-13  Score=129.81  Aligned_cols=243  Identities=9%  Similarity=-0.014  Sum_probs=167.6

Q ss_pred             cCCEEEEEECCCCCeeeEEEecCCCCCE-------EEEEEcCCCCEEEEEe--cCCeEEEEeCCCceeeEEecCCCcccE
Q 012679          159 LGSTVYLWDASDGTTSELVTVDDENGPV-------TSVNWAPDGRHIAIGL--NNCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       159 ~d~~v~iwd~~~~~~~~~~~~~~h~~~V-------~~v~~s~~g~~la~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      .++.|.+||..+++.  +..+..+....       ..+.|+++++.+++..  .++.+.+|+....+.......     .
T Consensus        95 ~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~  167 (373)
T d2madh_          95 RTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-----P  167 (373)
T ss_pred             cceEEEEEECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc-----c
Confidence            357899999999987  33333333322       4578899999776664  356789999888776655442     3


Q ss_pred             EEEEe--CC-CeEEEEeCCCcEEEEEccCCCeeEEEEc------ccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCC
Q 012679          230 GSLAW--NN-HILTTGGMDGLIINNDVRVRDHIVETYR------GHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMAS  300 (458)
Q Consensus       230 ~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~------~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~  300 (458)
                      .++.+  ++ ..+++.+.||.+.+|+....... ....      ++......+.+.+++.+ +..+.++.+.+|+.....
T Consensus       168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG-AGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAG  245 (373)
T ss_pred             eeEEEecCCCcEEEEEcCCCeEEEEEcCCceee-EEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCe
Confidence            45555  44 56678899999999998876542 2221      12223445566666654 455678899999987754


Q ss_pred             CCCcceeeeeeccc----------ccceeEEEecCCCCcEEEEeC-------CCCCCeEEEEECCCCCeeEEEeCCCCeE
Q 012679          301 SNSVTQWLHRLEEH----------TSAVKAIAWCPFQSNLLATGG-------GGGDRCIKFWNTHTGACLNSVDTGSQVC  363 (458)
Q Consensus       301 ~~~~~~~~~~~~~h----------~~~v~~l~~~p~~~~ll~s~~-------g~~d~~i~lwd~~~~~~~~~~~~~~~v~  363 (458)
                      ...    ......+          ......+++++++..++....       ...++.+.+||..+++.+..+..+..+.
T Consensus       246 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~  321 (373)
T d2madh_         246 ATN----KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD  321 (373)
T ss_pred             EEE----EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCee
Confidence            311    1111111          122344566666554443221       1256789999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCC
Q 012679          364 ALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       364 ~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                      .++|+|+|+.++.+++..++.|+|||+.+++.+.++.++....+.|++.++
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999999999765555778999999999999999999988877778877554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=4.1e-14  Score=138.63  Aligned_cols=139  Identities=19%  Similarity=0.271  Sum_probs=101.9

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEE---EecCCCCCEEEEEEcCCCCEEEEEec---------CCeEEEEeCCC
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELV---TVDDENGPVTSVNWAPDGRHIAIGLN---------NCQVQLWDSTA  214 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~---~~~~h~~~V~~v~~s~~g~~la~g~~---------dg~v~iwd~~~  214 (458)
                      +.|.++.-+....++.+++||+.+++...+.   .+..|...|.++.|||||++|+.++.         ++.+.|||+.+
T Consensus        22 ~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~  101 (470)
T d2bgra1          22 LRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (470)
T ss_dssp             CEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             CEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence            4566644444567889999999999875443   23455678999999999999998854         56789999999


Q ss_pred             ceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcc-----------------cccceEeEEE
Q 012679          215 NRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRG-----------------HNQEVCGLKW  275 (458)
Q Consensus       215 ~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~-----------------h~~~v~~l~~  275 (458)
                      ++.. .+.. +...+....|  +|+.|+.. .++.+++|+..++........+                 ..+....+.|
T Consensus       102 ~~~~-~l~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1         102 RQLI-TEER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             TEEC-CSSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             Cccc-cccc-CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            8754 4554 8888999999  57888875 5678999998877542211111                 1233466889


Q ss_pred             cCCCCEEEEEECC
Q 012679          276 SASGQQLASGGND  288 (458)
Q Consensus       276 spd~~~l~sg~~d  288 (458)
                      ||||++||....|
T Consensus       179 SPDGk~ia~~~~d  191 (470)
T d2bgra1         179 SPNGTFLAYAQFN  191 (470)
T ss_dssp             CTTSSEEEEEEEE
T ss_pred             CCCCCccceeEec
Confidence            9999999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.5e-14  Score=137.03  Aligned_cols=268  Identities=11%  Similarity=-0.044  Sum_probs=173.7

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEeCCCceeeEEecCCCc----
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL----------NNCQVQLWDSTANRQLRTLRGGHR----  226 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~----------~dg~v~iwd~~~~~~~~~~~~~~~----  226 (458)
                      ..|++||..+++.  +..+..+...  .++|+|||++|++.+          .|+.|.+||..+++.+..+.....    
T Consensus        46 ~~~~~~d~~~~~~--~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~  121 (368)
T d1mdah_          46 TENWVSCAGCGVT--LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEEETTTTEE--EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             ceEEEEeCCCCcE--EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec
Confidence            4688889999987  4444444433  589999999998865          367899999999998887753111    


Q ss_pred             --ccEEEEEe--CCCeEEEEe-CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCC
Q 012679          227 --SRVGSLAW--NNHILTTGG-MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASS  301 (458)
Q Consensus       227 --~~v~~l~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~  301 (458)
                        .....++|  ++++|+++. .++.+.+||+.+... ...+..+.....   +......++..+.||.+.+|++.....
T Consensus       122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCce
Confidence              11223555  677777665 579999999987664 444443332211   112344566677788888887765544


Q ss_pred             CCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-------------CCCeEEEEEc
Q 012679          302 NSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-------------GSQVCALLWN  368 (458)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-------------~~~v~~~~~s  368 (458)
                      .........+..+...+....+.+++ ..+.+    ..+.+++++...+........             ......++++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  272 (368)
T d1mdah_         198 AAGIVGAQCTGAQNCSSQAAQANYPG-MLVWA----VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCEEETTTT-EEEEC----BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             eeeeeecccccccccceeecccccCc-EEEEe----cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc
Confidence            22111112233444555667777753 33333    345677777666554332211             1123457889


Q ss_pred             CCCCeEEEEecCC-------CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCCccc
Q 012679          369 KNERELLSSHGFT-------QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGC--TVASAAADETLRFWNVFGAPQVI  439 (458)
Q Consensus       369 ~~~~~l~~~~g~~-------d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~i~iW~~~~~~~~~  439 (458)
                      +++..+++.....       .+.|.+||..+++.+..+. +...+.+++|+|||+  .++++..|+.|++||..+++.+.
T Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            9988887653211       2469999999999888776 345788999999997  34667789999999999988776


Q ss_pred             ccC
Q 012679          440 SKS  442 (458)
Q Consensus       440 ~~~  442 (458)
                      +..
T Consensus       352 ~i~  354 (368)
T d1mdah_         352 SVE  354 (368)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.8e-13  Score=126.62  Aligned_cols=234  Identities=11%  Similarity=0.119  Sum_probs=164.0

Q ss_pred             EEEEEecCCeEEEEeCCCcee---eEEecCCCcccEEEEEe--CCCeEEEE-eCCCcEEEEEccCCCeeEE--EEccccc
Q 012679          197 HIAIGLNNCQVQLWDSTANRQ---LRTLRGGHRSRVGSLAW--NNHILTTG-GMDGLIINNDVRVRDHIVE--TYRGHNQ  268 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~---~~~~~~~~~~~v~~l~~--~~~~l~sg-~~dg~i~vwd~~~~~~~~~--~~~~h~~  268 (458)
                      .++++..|+.|+||++.....   ++.+.  |...+..|+|  ++++|+++ ..|+.|.+|++........  ....+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~--~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEc--CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            346677999999999876543   33334  7788999999  46777554 5589999999986653222  2223455


Q ss_pred             ceEeEEEcCCCCEEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEEC
Q 012679          269 EVCGLKWSASGQQLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNT  347 (458)
Q Consensus       269 ~v~~l~~spd~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~  347 (458)
                      .++.++|+|||++|++++. ++.|.+|+.......    .......+...+.++.++|++..+++...  .+..|.+|+.
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~v~~s~d~~~~~~~~~--~~~~i~~~~~  157 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV----GVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFTV  157 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE----EEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccce----ecccccCCCccceEEEeeecceeeecccc--ccceeeEEEe
Confidence            6788999999999999885 678999987665431    12334456677889999999888887765  6788999998


Q ss_pred             CCCCeeEEE-------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce----eeEEEe------CCCCcEEEEE
Q 012679          348 HTGACLNSV-------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV----KMAELS------GHTSRVLFMA  410 (458)
Q Consensus       348 ~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~----~~~~~~------~h~~~V~~l~  410 (458)
                      .+.......       ........+.|++++..++.. +...+...+|++....    ....+.      ........++
T Consensus       158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             ccCCcceeeeceeeeeecCCCccEEEEeccceeEEee-ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            775433221       234567899999999998876 3466778888765322    222221      1234567889


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEecCCCCccc
Q 012679          411 QSPDGCTVASAA-ADETLRFWNVFGAPQVI  439 (458)
Q Consensus       411 ~spdg~~l~s~s-~Dg~i~iW~~~~~~~~~  439 (458)
                      +++++++++.+. .++.+.+|++.......
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGSVL  266 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCCEE
Confidence            999999776554 57899999997665443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.3e-13  Score=130.39  Aligned_cols=236  Identities=7%  Similarity=-0.013  Sum_probs=161.1

Q ss_pred             CCEEEEEECCCCCeeeEEEecCC-----CCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccEEEEE
Q 012679          160 GSTVYLWDASDGTTSELVTVDDE-----NGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRVGSLA  233 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h-----~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~  233 (458)
                      ++.|.+||..+++......+..+     ......++|+|||++|+++. .++.+.+||+.+++.+..+.. +.... ...
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~  172 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFH-IHP  172 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCC-CEE
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec-cCcce-Ecc
Confidence            56899999999987444433221     12234689999999998876 578999999999999988875 32221 112


Q ss_pred             eCCCeEEEEeCCCcEEEEEccCCCeeEE-----EEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceee
Q 012679          234 WNNHILTTGGMDGLIINNDVRVRDHIVE-----TYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWL  308 (458)
Q Consensus       234 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~-----~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  308 (458)
                      .....++..+.||.+.++++........     ....+...+....+.+++..+.+.  ++.+++++........    .
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~----~  246 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATM----K  246 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEE----E
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEE----E
Confidence            2456777888999999998876543221     122345556677888888766654  3556666665543310    1


Q ss_pred             eeecc----------cccceeEEEecCCCCcEEEEeCC------CCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCC
Q 012679          309 HRLEE----------HTSAVKAIAWCPFQSNLLATGGG------GGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNER  372 (458)
Q Consensus       309 ~~~~~----------h~~~v~~l~~~p~~~~ll~s~~g------~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~  372 (458)
                      .....          .......++++|++..+++...+      .....|.+||..+++.+..+..+..+..++|+|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~  326 (368)
T d1mdah_         247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGA  326 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSS
T ss_pred             eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCC
Confidence            11111          11223468888988777665421      112469999999999999888888899999999998


Q ss_pred             eEEEEecCCCCcEEEEeCCCceeeEEEeCCC
Q 012679          373 ELLSSHGFTQNQLTLWKYPSMVKMAELSGHT  403 (458)
Q Consensus       373 ~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~  403 (458)
                      .++.+++..++.|.+||..+++.+.++....
T Consensus       327 ~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         327 SDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            6444435678999999999999999887543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.53  E-value=3.4e-13  Score=128.21  Aligned_cols=255  Identities=10%  Similarity=0.053  Sum_probs=168.4

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecC------------------------------CCCCEEEEEEcCCCCEEEEEe-
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDD------------------------------ENGPVTSVNWAPDGRHIAIGL-  202 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~------------------------------h~~~V~~v~~s~~g~~la~g~-  202 (458)
                      +++++.+|.|.+|++.+++.  +.++.-                              |.-.+.....+|||++|++.. 
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~--l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRE--LMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEE--EEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCCcE--EEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            45667789999999988876  333211                              222344555678999997664 


Q ss_pred             cCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CC--eEEEEeCCC-----------------cEEEEEccCCCeeEE
Q 012679          203 NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NH--ILTTGGMDG-----------------LIINNDVRVRDHIVE  261 (458)
Q Consensus       203 ~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~--~l~sg~~dg-----------------~i~vwd~~~~~~~~~  261 (458)
                      .++.|.++|+.+++....+...+...+..++++  ++  +++..+.+.                 .+..+|..+.....+
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            677999999999998887765577888888884  54  454444432                 234567766554322


Q ss_pred             EEcccccceEeEEEcCCCCEEEEEECCC-----------------------------------------cEEEEeCCCCC
Q 012679          262 TYRGHNQEVCGLKWSASGQQLASGGNDN-----------------------------------------LLHIWDRSMAS  300 (458)
Q Consensus       262 ~~~~h~~~v~~l~~spd~~~l~sg~~dg-----------------------------------------~i~iwd~~~~~  300 (458)
                      ...  .+....+.|+|||+++++.+.+.                                         .+.|++.....
T Consensus       172 I~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         172 VIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             Eec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            222  24577899999999998876442                                         22233222221


Q ss_pred             CCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe------------eEEEeCCCCeEEEEEc
Q 012679          301 SNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC------------LNSVDTGSQVCALLWN  368 (458)
Q Consensus       301 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~------------~~~~~~~~~v~~~~~s  368 (458)
                      .      +..+.... ....+.++|++.++++++.  .+++|.+||+.+...            ....+.+-......|+
T Consensus       250 v------~~~IPvgk-sPhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd  320 (441)
T d1qnia2         250 F------TRYIPVPK-NPHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD  320 (441)
T ss_dssp             S------EEEECCBS-SCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC
T ss_pred             e------EEEEeCCC-CccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec
Confidence            1      33443333 3568999999999999876  999999999865321            1111222234556899


Q ss_pred             CCCCeEEEEecCCCCcEEEEeCCC---------c-eeeEEE-----eCCCCcEEEEEEcCCCCEEEEEeC
Q 012679          369 KNERELLSSHGFTQNQLTLWKYPS---------M-VKMAEL-----SGHTSRVLFMAQSPDGCTVASAAA  423 (458)
Q Consensus       369 ~~~~~l~~~~g~~d~~i~iwd~~~---------~-~~~~~~-----~~h~~~V~~l~~spdg~~l~s~s~  423 (458)
                      ++|..+.+  .+-|.+|..|++..         . ..+..+     .||...+.+.+++|||++|++++.
T Consensus       321 ~~g~~yts--~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         321 GRGNAYTT--LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             SSSEEEEE--ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             CCceEEEc--ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            98865544  66899999999741         1 123333     467777777889999999999943

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=2.4e-10  Score=108.35  Aligned_cols=228  Identities=8%  Similarity=0.033  Sum_probs=158.0

Q ss_pred             EEEEecCCeEEEEeCCCceeeEEecCC-----------------------------CcccEEEE--EeCCCeEEEE-eCC
Q 012679          198 IAIGLNNCQVQLWDSTANRQLRTLRGG-----------------------------HRSRVGSL--AWNNHILTTG-GMD  245 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~~~~~~~~~~-----------------------------~~~~v~~l--~~~~~~l~sg-~~d  245 (458)
                      +++|+.+|.|.|||+.+++.++.+...                             |.......  ..+|++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            567788999999999999988876431                             11122222  2367777555 578


Q ss_pred             CcEEEEEccCCCeeEEEEcccccceEeEEEcCCCC--EEEEEECCCc-----------------EEEEeCCCCCCCCcce
Q 012679          246 GLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ--QLASGGNDNL-----------------LHIWDRSMASSNSVTQ  306 (458)
Q Consensus       246 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~--~l~sg~~dg~-----------------i~iwd~~~~~~~~~~~  306 (458)
                      ..|.++|+++.+.....-..+...+.++.|+|+|+  +++..+.+..                 +..+|..+...     
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-----  168 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-----  168 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-----
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee-----
Confidence            89999999987653222234677899999999998  4555444321                 24466555443     


Q ss_pred             eeeeecccccceeEEEecCCCCcEEEEeCCC--------------------------------------CCCeEEEEECC
Q 012679          307 WLHRLEEHTSAVKAIAWCPFQSNLLATGGGG--------------------------------------GDRCIKFWNTH  348 (458)
Q Consensus       307 ~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~--------------------------------------~d~~i~lwd~~  348 (458)
                       ..++.. ......++++|+++.+++++.++                                      .++.+.+++..
T Consensus       169 -~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~  246 (441)
T d1qnia2         169 -AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG  246 (441)
T ss_dssp             -EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred             -eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence             233322 23567899999999888876422                                      14456666666


Q ss_pred             CCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceee--------EEEeCCC---CcEEEEEEcCCCCE
Q 012679          349 TGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKM--------AELSGHT---SRVLFMAQSPDGCT  417 (458)
Q Consensus       349 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~--------~~~~~h~---~~V~~l~~spdg~~  417 (458)
                      ..+.+..+..+.....+.++|+|++++++ |..+++|.|||+.+....        ..+.++.   -.....+|+++|..
T Consensus       247 ~~~v~~~IPvgksPhGv~vSPDGkyl~~~-~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~  325 (441)
T d1qnia2         247 ESEFTRYIPVPKNPHGLNTSPDGKYFIAN-GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA  325 (441)
T ss_dssp             SCSSEEEECCBSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             CCceEEEEeCCCCccCceECCCCCEEEEe-CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence            67777888888778899999999999887 668999999998664321        1111221   23566799999999


Q ss_pred             EEEEeCCCcEEEEecC
Q 012679          418 VASAAADETLRFWNVF  433 (458)
Q Consensus       418 l~s~s~Dg~i~iW~~~  433 (458)
                      +.+...|..|..|++.
T Consensus       326 yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         326 YTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEETTTTEEEEEEHH
T ss_pred             EEcccccceEEEeccc
Confidence            9999999999999984

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.7e-08  Score=89.69  Aligned_cols=239  Identities=15%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCC---eEEEEeCCCceeeEEecCCCcccEEEEEeC--C
Q 012679          162 TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNC---QVQLWDSTANRQLRTLRGGHRSRVGSLAWN--N  236 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg---~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~  236 (458)
                      .|+|.|...+....+..   +...+.+-+|||||+.||......   .+.+.+...+.......  +........|+  +
T Consensus        20 ~l~i~d~dG~~~~~l~~---~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg   94 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEEETTSCSCEEEEE---ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCCcEEEec---CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee--eecccccceecCCC
Confidence            69999988766544433   356689999999999999875543   46777777666544443  67777788884  5


Q ss_pred             CeEEEEe-CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE-CCCc--EEEEeCCCCCCCCcceeeeeec
Q 012679          237 HILTTGG-MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG-NDNL--LHIWDRSMASSNSVTQWLHRLE  312 (458)
Q Consensus       237 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~-~dg~--i~iwd~~~~~~~~~~~~~~~~~  312 (458)
                      ..++... .++...++.......................+++++..++..+ .++.  |.+.++.....       ..+.
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-------~~~~  167 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRIT  167 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EECC
T ss_pred             CeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-------eeee
Confidence            6555544 3444333333322222333334445555667788777665544 4554  45555554432       3344


Q ss_pred             ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEec-CCCCcEEEEeCC
Q 012679          313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHG-FTQNQLTLWKYP  391 (458)
Q Consensus       313 ~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g-~~d~~i~iwd~~  391 (458)
                      .+........|+|++..++.+........|.+.+...+.. .............|+|+|+.|+..+. .....|.++++.
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            4566777889999999888876522333455566665544 33444556678899999999976542 123478899997


Q ss_pred             CceeeEEEeCCCCcEEEEEEcCC
Q 012679          392 SMVKMAELSGHTSRVLFMAQSPD  414 (458)
Q Consensus       392 ~~~~~~~~~~h~~~V~~l~~spd  414 (458)
                      .+.. ..+....+.+...+|||-
T Consensus       247 g~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         247 GRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SCCE-EECCCSSSEEEEEEECCC
T ss_pred             CCCE-EEEeCCCCcEEeEEeCCC
Confidence            6654 456666778888999983

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.27  E-value=2.8e-09  Score=100.01  Aligned_cols=280  Identities=9%  Similarity=0.023  Sum_probs=160.7

Q ss_pred             CeEEEEc--CCEEEEE--ECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-eeeEEecCCCc
Q 012679          153 NVLAIAL--GSTVYLW--DASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-RQLRTLRGGHR  226 (458)
Q Consensus       153 ~~la~~~--d~~v~iw--d~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-~~~~~~~~~~~  226 (458)
                      +|+.++.  ++.|+++  |.+++++..+.... .....+.-|+|+|++++|.+... +.+..|.+... ...........
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            3566654  4567655  55566654443322 23455678999999999988755 56777766532 22221110011


Q ss_pred             ccEEEEEe--CCCe--EEEEe-CCCcEEEEEccC------------CCeeEE----EEcccccceEeEEEcCCCCEEEEE
Q 012679          227 SRVGSLAW--NNHI--LTTGG-MDGLIINNDVRV------------RDHIVE----TYRGHNQEVCGLKWSASGQQLASG  285 (458)
Q Consensus       227 ~~v~~l~~--~~~~--l~sg~-~dg~i~vwd~~~------------~~~~~~----~~~~h~~~v~~l~~spd~~~l~sg  285 (458)
                      .....+++  +++.  +++.. ..+.|..+.+..            ......    .-......+.++.|+|||++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            11222233  3332  22221 234444443321            111111    111223347899999999998887


Q ss_pred             EC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCee--EE---EeC-
Q 012679          286 GN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACL--NS---VDT-  358 (458)
Q Consensus       286 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~--~~---~~~-  358 (458)
                      +. ...|.+|+............. ...........++|+|+++.++++..  .++.|.+|++..+...  ..   ... 
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~-~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSV-DAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEE-ECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             eCCCCEEEEEEccCCCceeeccce-eecCCCCceEEEEECCCCceEEEecc--CCCEEEEEEecCCCceEEEEeeeeccc
Confidence            64 457888876543321111111 11123456789999999998888876  8899999998765432  22   111 


Q ss_pred             --------------CCCeEEEEEcCCCCeEEEEecCC----CCcEEEEeCCCceeeE---EE---eCCCCcEEEEEEcC-
Q 012679          359 --------------GSQVCALLWNKNERELLSSHGFT----QNQLTLWKYPSMVKMA---EL---SGHTSRVLFMAQSP-  413 (458)
Q Consensus       359 --------------~~~v~~~~~s~~~~~l~~~~g~~----d~~i~iwd~~~~~~~~---~~---~~h~~~V~~l~~sp-  413 (458)
                                    ......+.++|+|++++++....    ...|..|++.....+.   .+   ........+++++| 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence                          01245789999999999874322    2247778776532222   11   12234567899998 


Q ss_pred             CCCEEEEEe-CCCcEEEEecCCCC
Q 012679          414 DGCTVASAA-ADETLRFWNVFGAP  436 (458)
Q Consensus       414 dg~~l~s~s-~Dg~i~iW~~~~~~  436 (458)
                      +|++|+.+. .++.|.+|++....
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCEEEEEeCCCCeEEEEEEeCCc
Confidence            899887664 67999999986553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.17  E-value=6.1e-10  Score=108.25  Aligned_cols=143  Identities=15%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC----CCcccEEEEEe--CCCeEEEEeC---------CCcEEEE
Q 012679          187 TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG----GHRSRVGSLAW--NNHILTTGGM---------DGLIINN  251 (458)
Q Consensus       187 ~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~----~~~~~v~~l~~--~~~~l~sg~~---------dg~i~vw  251 (458)
                      ..+.|.++++++..  .+|.+.+||+.+++....+..    .|...|.++.|  +++.|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  578899999999987765543    24577889888  5788887743         5788999


Q ss_pred             EccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCccee---eeeec---------cccccee
Q 012679          252 DVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQW---LHRLE---------EHTSAVK  319 (458)
Q Consensus       252 d~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~~---------~h~~~v~  319 (458)
                      |+.++.  ...+..|...+..+.|||||+.||... ++.+++|+...+........   -..+.         ...+...
T Consensus        98 d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          98 DLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             ETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             ECCCCc--ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            998765  456778889999999999999999965 57899999887764110000   00000         1223456


Q ss_pred             EEEecCCCCcEEEEe
Q 012679          320 AIAWCPFQSNLLATG  334 (458)
Q Consensus       320 ~l~~~p~~~~ll~s~  334 (458)
                      .+.|+|++..++...
T Consensus       175 ~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             CEEECTTSSEEEEEE
T ss_pred             ccEECCCCCccceeE
Confidence            788999988776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=2e-08  Score=91.33  Aligned_cols=239  Identities=13%  Similarity=0.032  Sum_probs=157.7

Q ss_pred             EEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEc
Q 012679          176 LVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       176 ~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  253 (458)
                      +..+.. ...+..++++|||+++++...+++|..||.... .. .+.. ....+.+++|  +++++++...++.+..++.
T Consensus        21 ~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~-~~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          21 ITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EE-EEEc-CCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            444443 335889999999999999999999999985543 22 2333 5678889999  5788888888888888887


Q ss_pred             cCCCeeEEEE--cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcce----eeeeecccccceeEEEecCCC
Q 012679          254 RVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQ----WLHRLEEHTSAVKAIAWCPFQ  327 (458)
Q Consensus       254 ~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~~~h~~~v~~l~~~p~~  327 (458)
                      .........+  .........+.+.++++++++.+.++.+..+|...........    ..............+.+.  +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~  174 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--G  174 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--T
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--C
Confidence            6543322222  2345568899999999999998888999888877653210000    000001112234456554  4


Q ss_pred             CcEEEEeCCCCCCeEEEEECCCCCee---EEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCce-eeEEEeCCC
Q 012679          328 SNLLATGGGGGDRCIKFWNTHTGACL---NSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMV-KMAELSGHT  403 (458)
Q Consensus       328 ~~ll~s~~g~~d~~i~lwd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~-~~~~~~~h~  403 (458)
                      ..++++..  ..+.|..++.......   ..+........++++++|+.+++  ...++.|..++..... .+......-
T Consensus       175 ~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va--~~~~~~V~~i~p~G~~~~~~~~~~~~  250 (302)
T d2p4oa1         175 NFLYVSNT--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPDRSTTIIAQAEQGV  250 (302)
T ss_dssp             TEEEEEET--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTTCCEEEEECGGGTC
T ss_pred             CceeeecC--CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE--EcCCCcEEEECCCCCEEEEEecCCCC
Confidence            56777765  7889998887764432   22233455678999999997776  3467889988765432 233333344


Q ss_pred             CcEEEEEE---cCCCCEEEEEeCC
Q 012679          404 SRVLFMAQ---SPDGCTVASAAAD  424 (458)
Q Consensus       404 ~~V~~l~~---spdg~~l~s~s~D  424 (458)
                      ..+++++|   ++|++.|..++..
T Consensus       251 ~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         251 IGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCceEEEEcCCCCCCCEEEEECCC
Confidence            56899999   6788888766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=2.4e-07  Score=82.90  Aligned_cols=236  Identities=17%  Similarity=0.194  Sum_probs=160.5

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCC-----CcccEEEEEe--C-CCeEEE-EeCCCcEEEEEccC
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGG-----HRSRVGSLAW--N-NHILTT-GGMDGLIINNDVRV  255 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~-----~~~~v~~l~~--~-~~~l~s-g~~dg~i~vwd~~~  255 (458)
                      ....|+++++|+.+++-..+..|++||.+ ++.+..+...     .......+++  + +..+++ .+.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            47899999999987777778899999955 6666666321     1122344444  2 333433 3445577777754 


Q ss_pred             CCeeEEEE-cccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee--cccccceeEEEecCCCCcEEE
Q 012679          256 RDHIVETY-RGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL--EEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       256 ~~~~~~~~-~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      +.. ...+ ........++++.++++++++....+.+.+++.... .      +..+  ..+......+++.+++ .+++
T Consensus       102 g~~-~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~------~~~~g~~~~~~~~~~i~~d~~g-~i~v  172 (279)
T d1q7fa_         102 GQF-VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V------LHKFGCSKHLEFPNGVVVNDKQ-EIFI  172 (279)
T ss_dssp             SCE-EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E------EEEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             ccc-eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-e------eecccccccccccceeeeccce-eEEe
Confidence            332 3333 234556788999999998888887888888885432 1      2332  3455667788998864 5666


Q ss_pred             EeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--CCcEE
Q 012679          333 TGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--TSRVL  407 (458)
Q Consensus       333 s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--~~~V~  407 (458)
                      +..  ..+.|++||. +|+.+.++...   .....+++.++|+.+++- ...++.|.+|+ ++++.+.++...  .....
T Consensus       173 ~d~--~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad-~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         173 SDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD-NHNNFNLTIFT-QDGQLISALESKVKHAQCF  247 (279)
T ss_dssp             EEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE-CSSSCEEEEEC-TTSCEEEEEEESSCCSCEE
T ss_pred             eec--cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEE-CCCCcEEEEEC-CCCCEEEEEeCCCCCCCEe
Confidence            655  7789999996 56777777542   347899999999866653 33456799998 567777666432  34578


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCc
Q 012679          408 FMAQSPDGCTVASAAADETLRFWNVFGAPQ  437 (458)
Q Consensus       408 ~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~  437 (458)
                      .|++.|||.+++ ++.+..|++|+.....+
T Consensus       248 ~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         248 DVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             EEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            999999997655 56789999999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=7.9e-08  Score=87.80  Aligned_cols=239  Identities=6%  Similarity=0.025  Sum_probs=153.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEec-------CCeEEEEeCCCceeeEEecC---CCcccEEEEEeC--CCeEEEEeCCCcEEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLN-------NCQVQLWDSTANRQLRTLRG---GHRSRVGSLAWN--NHILTTGGMDGLIIN  250 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~-------dg~v~iwd~~~~~~~~~~~~---~~~~~v~~l~~~--~~~l~sg~~dg~i~v  250 (458)
                      -.....++|.++|++.++...       +|.|..||..++........   .....-..+.++  ++.|+++.....|..
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            344678899999997766432       46799999888765443321   012235678885  677888877777888


Q ss_pred             EEccCCCeeEEEEcccc---cceEeEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCCCCCcceeeeeec
Q 012679          251 NDVRVRDHIVETYRGHN---QEVCGLKWSASGQQLASGGN---------------DNLLHIWDRSMASSNSVTQWLHRLE  312 (458)
Q Consensus       251 wd~~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~  312 (458)
                      .|.......+.......   ...+.+++.++|++.++-..               +|.|..++...  .      ...+.
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--~------~~~~~  168 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--Q------MIQVD  168 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--C------EEEEE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC--c------eeEee
Confidence            88765432111111111   13577999999998776432               23344444321  1      12222


Q ss_pred             ccccceeEEEecCCCC----cEEEEeCCCCCCeEEEEECCCCCeeEE------EeC--CCCeEEEEEcCCCCeEEEEecC
Q 012679          313 EHTSAVKAIAWCPFQS----NLLATGGGGGDRCIKFWNTHTGACLNS------VDT--GSQVCALLWNKNERELLSSHGF  380 (458)
Q Consensus       313 ~h~~~v~~l~~~p~~~----~ll~s~~g~~d~~i~lwd~~~~~~~~~------~~~--~~~v~~~~~s~~~~~l~~~~g~  380 (458)
                      .....-..++|+|++.    .++++.+  ..+.|..||+.....+..      +..  ......+++..+|+..++..  
T Consensus       169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~--  244 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW--  244 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE--
T ss_pred             CCcceeeeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc--
Confidence            2233346789988754    4666654  788899988764433321      111  12356899999999877744  


Q ss_pred             CCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEecC
Q 012679          381 TQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTV-ASAAADETLRFWNVF  433 (458)
Q Consensus       381 ~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iW~~~  433 (458)
                      ..+.|.+||...++.+..+......+++++|.||++.| +|.+.+|.|...++.
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            57899999998888877777777788999999999754 666667877766653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=2.4e-07  Score=84.72  Aligned_cols=237  Identities=8%  Similarity=0.059  Sum_probs=152.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeC----CCcEEEEEccCC
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGM----DGLIINNDVRVR  256 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~----dg~i~vwd~~~~  256 (458)
                      ...+..++|.++|++.++-...|.|..|+..+++....+.. .......++++  +.++++...    .+.|...+....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            44567899999999777777889999999887766555543 55667888884  666665533    234555555443


Q ss_pred             CeeEEEEcc--cccceEeEEEcCCCCEEEEEEC------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCC
Q 012679          257 DHIVETYRG--HNQEVCGLKWSASGQQLASGGN------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQS  328 (458)
Q Consensus       257 ~~~~~~~~~--h~~~v~~l~~spd~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  328 (458)
                      .. ......  -......+++.++|++.++...      .+.+..++.....       +..+...-.....++|+|+++
T Consensus       118 ~~-~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-------~~~~~~~~~~pnGia~s~dg~  189 (319)
T d2dg1a1         118 NL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-------VTPIIQNISVANGIALSTDEK  189 (319)
T ss_dssp             SC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-------EEEEEEEESSEEEEEECTTSS
T ss_pred             ee-eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-------eEEEeeccceeeeeeeccccc
Confidence            32 222211  1234678999999997766432      1235555543322       222222334457899999988


Q ss_pred             cEEEEeCCCCCCeEEEEECCCC-CeeEEE--------eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEE
Q 012679          329 NLLATGGGGGDRCIKFWNTHTG-ACLNSV--------DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAEL  399 (458)
Q Consensus       329 ~ll~s~~g~~d~~i~lwd~~~~-~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~  399 (458)
                      .++++-.  ..+.|..|++... ......        ........+++..+|+..++..  ..+.|.+|+ +.++.+.++
T Consensus       190 ~lyvad~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~--~~g~V~~~~-p~G~~l~~i  264 (319)
T d2dg1a1         190 VLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFN-KRGYPIGQI  264 (319)
T ss_dssp             EEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE--TTTEEEEEC-TTSCEEEEE
T ss_pred             eEEEecc--cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc--CCCEEEEEC-CCCcEEEEE
Confidence            8888765  7889999997643 221111        1122367899999999777743  689999999 578888877


Q ss_pred             e------CCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecC
Q 012679          400 S------GHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVF  433 (458)
Q Consensus       400 ~------~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~  433 (458)
                      .      ++...+++++|.+++..+++...|    +.-.+|.+.
T Consensus       265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~  308 (319)
T d2dg1a1         265 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN  308 (319)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred             eCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEe
Confidence            5      344568899999988777665543    334455543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=3e-07  Score=81.32  Aligned_cols=222  Identities=16%  Similarity=0.133  Sum_probs=139.1

Q ss_pred             eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCC---cEEEEEccCCCeeEEEEcccccceEeEEEcCCCC
Q 012679          206 QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDG---LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQ  280 (458)
Q Consensus       206 ~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~  280 (458)
                      .|.|.|...... +.+.. +...+..-+|  +|+.|+......   .+.+.+.....  ...+..+........|+|+|+
T Consensus        20 ~l~i~d~dG~~~-~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSC-EEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCc-EEEec-CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCC
Confidence            477777654443 33333 5677888899  578887664433   46666665544  345556778888999999999


Q ss_pred             EEEEEEC-CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC
Q 012679          281 QLASGGN-DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG  359 (458)
Q Consensus       281 ~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~  359 (458)
                      .++.... ++...++........     ...............+++++..++++........|.+.++..+.........
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~  170 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG  170 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCC-----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred             eeeEeeecCCccceeeccccccc-----ceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc
Confidence            9987664 333333322222111     2223334444455677787777777765222335777777777655555555


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEecCCCC
Q 012679          360 SQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAA---DETLRFWNVFGAP  436 (458)
Q Consensus       360 ~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~---Dg~i~iW~~~~~~  436 (458)
                      .......|+|+++.++.... ..+...+|.+........+..+........|||||+.|+-.+.   ...|.+|++.++.
T Consensus       171 ~~~~~~~~spdg~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         171 SQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             SEEEEEEECTTSSEEEEEEE-CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ccccccccccccceeEEEee-cCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            66778899999999988643 4454455444333222344445666778899999999875554   3468899998765


Q ss_pred             c
Q 012679          437 Q  437 (458)
Q Consensus       437 ~  437 (458)
                      .
T Consensus       250 ~  250 (269)
T d2hqsa1         250 K  250 (269)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.1e-07  Score=84.30  Aligned_cols=235  Identities=8%  Similarity=-0.041  Sum_probs=144.2

Q ss_pred             CCEEEEEEcCCCCEEEEE-ecCCeEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeE
Q 012679          184 GPVTSVNWAPDGRHIAIG-LNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIV  260 (458)
Q Consensus       184 ~~V~~v~~s~~g~~la~g-~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  260 (458)
                      .....|++.++|+..++. ...+.+..++............ -......+++  ++.++++....+.+++++-..... +
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-V   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC-SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-E
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC-CccCceEEEEcCCCCEEEeeeeeceeeeeeecccee-e
Confidence            456899999999966654 4556777776554433222222 2233455666  466666666666665555433322 2


Q ss_pred             EEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCC
Q 012679          261 ETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDR  340 (458)
Q Consensus       261 ~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~  340 (458)
                      ... .......++++.++++++++-..++.+..++.......     .... ........+++.+++. ++++..  .++
T Consensus        92 ~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-----~~~~-~~~~~p~~i~~~~~g~-~~v~~~--~~~  161 (260)
T d1rwia_          92 LPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-----VLPF-TGLNDPDGVAVDNSGN-VYVTDT--DNN  161 (260)
T ss_dssp             CCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-----ECCC-CSCCSCCEEEECTTCC-EEEEEG--GGT
T ss_pred             eee-eeeeecccccccccceeEeeccccccccccccccceee-----eeee-cccCCcceeeecCCCC-Eeeecc--ccc
Confidence            222 22355789999999998887767777888876554321     1111 1223457899999765 566554  678


Q ss_pred             eEEEEECCCCCeeEEE-eCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679          341 CIKFWNTHTGACLNSV-DTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA  419 (458)
Q Consensus       341 ~i~lwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~  419 (458)
                      .|..+|.......... ........++++++++.+++  ....+.|..++.............-.....|+++++|.+++
T Consensus       162 ~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vs--d~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~v  239 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV  239 (260)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEE
T ss_pred             cccccccccceeeeeeccccCCCccceeeeeeeeeee--ecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEE
Confidence            8999998765443322 23456789999999987666  44677888887654432221122335678999999999888


Q ss_pred             EEeCCCcEEEEec
Q 012679          420 SAAADETLRFWNV  432 (458)
Q Consensus       420 s~s~Dg~i~iW~~  432 (458)
                      +-..++.|+..+.
T Consensus       240 ad~~~~rI~~i~~  252 (260)
T d1rwia_         240 ADRGNDRVVKLTS  252 (260)
T ss_dssp             EEGGGTEEEEECC
T ss_pred             EECCCCEEEEEeC
Confidence            7666776655443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=5.1e-07  Score=79.83  Aligned_cols=242  Identities=10%  Similarity=0.005  Sum_probs=142.8

Q ss_pred             eeeCCCCCCccccceeeccC-CCeEEEEc--CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEE
Q 012679          132 TLDAPDLVDDYYLNLLDWGS-SNVLAIAL--GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQ  208 (458)
Q Consensus       132 ~l~~~~~~~d~~~~~~~~~~-~~~la~~~--d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~  208 (458)
                      +|...++.....-..+++++ ++++.+..  .+.+..++...... ......+ ......++++++|+++++....+.++
T Consensus         4 ~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~   81 (260)
T d1rwia_           4 VLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVT   81 (260)
T ss_dssp             ECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CE-EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEE
T ss_pred             EEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-EEeccCC-ccCceEEEEcCCCCEEEeeeeeceee
Confidence            33333433333445566655 44444432  35666665544332 1222222 23467899999999877776666777


Q ss_pred             EEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEE
Q 012679          209 LWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       209 iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~  286 (458)
                      +++..+...+....  ......+++++  ++++++-.....+..++........... .......++++.++++++++..
T Consensus        82 ~~~~~~~~~~~~~~--~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          82 LAAGSNNQTVLPFD--GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             ECTTCSCCEECCCC--SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeeeccceeeeeee--eeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecCCCCEeeecc
Confidence            76655554443332  33556788884  5666666666677777765443222111 2234557899999999888888


Q ss_pred             CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEE-eCCCCeEEE
Q 012679          287 NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSV-DTGSQVCAL  365 (458)
Q Consensus       287 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~-~~~~~v~~~  365 (458)
                      .++.|..+|......      .............|++.+++ .++++..  ..+.|..++.......... ..-.....+
T Consensus       159 ~~~~i~~~d~~~~~~------~~~~~~~~~~p~gi~~d~~g-~l~vsd~--~~~~i~~~~~~~~~~~~~~~~~~~~P~~i  229 (260)
T d1rwia_         159 DNNRVVKLEAESNNQ------VVLPFTDITAPWGIAVDEAG-TVYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAV  229 (260)
T ss_dssp             GGTEEEEECTTTCCE------EECCCSSCCSEEEEEECTTC-CEEEEET--TTTEEEEECTTCSCCEECCCCSCCCEEEE
T ss_pred             cccccccccccccee------eeeeccccCCCccceeeeee-eeeeeec--CCCEEEEEeCCCCeEEEEccCCCCCeEEE
Confidence            888999999775432      12122334556789999964 6777665  6778888876544322211 122467899


Q ss_pred             EEcCCCCeEEEEecCCCCcEEEEe
Q 012679          366 LWNKNERELLSSHGFTQNQLTLWK  389 (458)
Q Consensus       366 ~~s~~~~~l~~~~g~~d~~i~iwd  389 (458)
                      ++++++..+++  ...++.|+.++
T Consensus       230 ~~d~~g~l~va--d~~~~rI~~i~  251 (260)
T d1rwia_         230 AVDSDRTVYVA--DRGNDRVVKLT  251 (260)
T ss_dssp             EECTTCCEEEE--EGGGTEEEEEC
T ss_pred             EEeCCCCEEEE--ECCCCEEEEEe
Confidence            99999876665  23456666544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=1.2e-06  Score=81.49  Aligned_cols=245  Identities=7%  Similarity=0.001  Sum_probs=142.1

Q ss_pred             eeeccC-CCeEEEEcCCEEEEEECCCC-CeeeEEEecCCCCCEEEEEEcCCCCEEEEEe---cCCeEEEEeCCCc-----
Q 012679          146 LLDWGS-SNVLAIALGSTVYLWDASDG-TTSELVTVDDENGPVTSVNWAPDGRHIAIGL---NNCQVQLWDSTAN-----  215 (458)
Q Consensus       146 ~~~~~~-~~~la~~~d~~v~iwd~~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~---~dg~v~iwd~~~~-----  215 (458)
                      -|.+++ ++.+.++..+.+..|.+... ......... .......+.++++++.+.+..   ..+.|..+.+...     
T Consensus        44 ~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~  122 (365)
T d1jofa_          44 WMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec-CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcce
Confidence            355665 45555666777888876642 232222222 234466788889988543332   2345555443211     


Q ss_pred             --------e---eeEEecCCCcccEEEEEe--CCCeEEEEeC-CCcEEEEEccCCCeeE--EEE--cccccceEeEEEcC
Q 012679          216 --------R---QLRTLRGGHRSRVGSLAW--NNHILTTGGM-DGLIINNDVRVRDHIV--ETY--RGHNQEVCGLKWSA  277 (458)
Q Consensus       216 --------~---~~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~--~~~--~~h~~~v~~l~~sp  277 (458)
                              +   ............+.++.|  +++++++++. ...|.+|+........  ...  .........+.|+|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p  202 (365)
T d1jofa_         123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             eEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC
Confidence                    0   111111112334678888  4777777654 4578888876544322  111  12345678899999


Q ss_pred             CCCEEEEEE-CCCcEEEEeCCCCCCCCcceeeeee--------------cccccceeEEEecCCCCcEEEEeCCC---CC
Q 012679          278 SGQQLASGG-NDNLLHIWDRSMASSNSVTQWLHRL--------------EEHTSAVKAIAWCPFQSNLLATGGGG---GD  339 (458)
Q Consensus       278 d~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~h~~~v~~l~~~p~~~~ll~s~~g~---~d  339 (458)
                      +++++.+.. .+++|.+|++......... .....              ..+......+.++|++..++++..+.   ..
T Consensus       203 dg~~~yv~~e~~~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~  281 (365)
T d1jofa_         203 TGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQ  281 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSC
T ss_pred             CCceEEEeccCCCEEEEEEecCCCceEEE-EeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccc
Confidence            999886555 5889999998765432110 01111              01223456789999999988875321   22


Q ss_pred             CeEEEEECCCCCeeEEE-------eCCCCeEEEEEcC-CCCeEEEEecCCCCcEEEEeCCCc
Q 012679          340 RCIKFWNTHTGACLNSV-------DTGSQVCALLWNK-NERELLSSHGFTQNQLTLWKYPSM  393 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~-------~~~~~v~~~~~s~-~~~~l~~~~g~~d~~i~iwd~~~~  393 (458)
                      ..|..|++.....+...       ..+.....+.++| +|++|+++ +..++.|.+|+....
T Consensus       282 ~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va-~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         282 GYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred             eEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEE-eCCCCeEEEEEEeCC
Confidence            34777776553322211       1245677899998 78888887 557899999986543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.9e-06  Score=81.51  Aligned_cols=275  Identities=11%  Similarity=0.104  Sum_probs=155.6

Q ss_pred             CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccE----------
Q 012679          160 GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRV----------  229 (458)
Q Consensus       160 d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v----------  229 (458)
                      .+.++++|+.+++..++.........+....|||||+.||... ++.|.+.+..++..++....+....|          
T Consensus        90 ~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vye  168 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (465)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             cccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhh
Confidence            4789999999998766654444455677789999999998875 56899999887776655543222222          


Q ss_pred             -------EEEEe--CCCeEEEEeC-CC---------------------------------cEEEEEccCCCeeEEEEc--
Q 012679          230 -------GSLAW--NNHILTTGGM-DG---------------------------------LIINNDVRVRDHIVETYR--  264 (458)
Q Consensus       230 -------~~l~~--~~~~l~sg~~-dg---------------------------------~i~vwd~~~~~~~~~~~~--  264 (458)
                             ..+.|  +|+.|+.... +.                                 .+.++|+..+........  
T Consensus       169 ee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~  248 (465)
T d1xfda1         169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD  248 (465)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred             hhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccC
Confidence                   35667  5677776542 22                                 234445443322111111  


Q ss_pred             ---ccccceEeEEEcCCCCEEEEEEC-C---CcEEEEeCCCCCCCCcceeeeeecccccc----eeEEEecCCCCcEEEE
Q 012679          265 ---GHNQEVCGLKWSASGQQLASGGN-D---NLLHIWDRSMASSNSVTQWLHRLEEHTSA----VKAIAWCPFQSNLLAT  333 (458)
Q Consensus       265 ---~h~~~v~~l~~spd~~~l~sg~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~p~~~~ll~s  333 (458)
                         ....-+..+.|++++++++...+ +   ..|.++|..++....    +..- ...+.    -....|+|++..++..
T Consensus       249 ~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~----~~~e-~~~~wv~~~~~~p~~~~dg~~~~fi  323 (465)
T d1xfda1         249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK----KHED-ESEAWLHRQNEEPVFSKDGRKFFFI  323 (465)
T ss_dssp             CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE----EEEE-ECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             cCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE----EEEE-cCCceEeccCCceeEccCCCeeEEE
Confidence               12224678899999987665433 2   257888988776521    1111 11221    2346789988876442


Q ss_pred             eCCCCC--CeEEEEECC------CCCeeEEEeC-CCCeEEE-EEcCCCCeEEEEec-CCCCcEEEEeC--CCceeeEEEe
Q 012679          334 GGGGGD--RCIKFWNTH------TGACLNSVDT-GSQVCAL-LWNKNERELLSSHG-FTQNQLTLWKY--PSMVKMAELS  400 (458)
Q Consensus       334 ~~g~~d--~~i~lwd~~------~~~~~~~~~~-~~~v~~~-~~s~~~~~l~~~~g-~~d~~i~iwd~--~~~~~~~~~~  400 (458)
                      ..-..+  +.+...++.      .+..+..+.. .-.|..+ .|+.+++.++..+. ..-+.-.||.+  ........+.
T Consensus       324 ~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt  403 (465)
T d1xfda1         324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS  403 (465)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred             EeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeec
Confidence            100022  233333321      2333333322 3345654 68998888765432 22233345444  3332222222


Q ss_pred             ---CCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCCcccc
Q 012679          401 ---GHTSRVLFMAQSPDGCTVASAAAD---ETLRFWNVFGAPQVIS  440 (458)
Q Consensus       401 ---~h~~~V~~l~~spdg~~l~s~s~D---g~i~iW~~~~~~~~~~  440 (458)
                         ........+.|||+|++++..+..   -.+.+++..+++.+..
T Consensus       404 ~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~  449 (465)
T d1xfda1         404 CDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD  449 (465)
T ss_dssp             TTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEE
Confidence               234456789999999999855543   4577888776665443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=9.7e-07  Score=84.96  Aligned_cols=276  Identities=13%  Similarity=0.098  Sum_probs=153.3

Q ss_pred             EEcCCEEEEEECCCCCeeeEEEecC-CCCCEEEEEEcCCCCEEEEEec---------CCeEEEEeCCCceeeEEecC-CC
Q 012679          157 IALGSTVYLWDASDGTTSELVTVDD-ENGPVTSVNWAPDGRHIAIGLN---------NCQVQLWDSTANRQLRTLRG-GH  225 (458)
Q Consensus       157 ~~~d~~v~iwd~~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~la~g~~---------dg~v~iwd~~~~~~~~~~~~-~~  225 (458)
                      -..+|.|.+||+.+++...+..... ..-.+....|||||++++....         .|.+.++|+.++........ ..
T Consensus        33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~  112 (465)
T d1xfda1          33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS  112 (465)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred             EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence            3456789999999887654444322 2235778899999999888743         56889999998875432221 12


Q ss_pred             cccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccc-----------------eEeEEEcCCCCEEEEEE
Q 012679          226 RSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQE-----------------VCGLKWSASGQQLASGG  286 (458)
Q Consensus       226 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~-----------------v~~l~~spd~~~l~sg~  286 (458)
                      ...+....|  +|+.|+... ++.|.+.+...+.....+..+....                 -.++.|||||++||...
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            334445566  577777654 5678888876655422222222111                 14678999999999875


Q ss_pred             C-CCcEEEE---------------------------------eCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEE
Q 012679          287 N-DNLLHIW---------------------------------DRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLA  332 (458)
Q Consensus       287 ~-dg~i~iw---------------------------------d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~  332 (458)
                      . +..|..+                                 |+..+.......+..........+..+.|.|++..++.
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~  271 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEE
Confidence            3 2333333                                 33222110000000001112234677899997654444


Q ss_pred             EeCC-CCCCeEEEEECCCCCeeEEEeC--CC----CeEEEEEcCCCCeEEEEe-cCCC--CcEEEEeCC------Cceee
Q 012679          333 TGGG-GGDRCIKFWNTHTGACLNSVDT--GS----QVCALLWNKNERELLSSH-GFTQ--NQLTLWKYP------SMVKM  396 (458)
Q Consensus       333 s~~g-~~d~~i~lwd~~~~~~~~~~~~--~~----~v~~~~~s~~~~~l~~~~-g~~d--~~i~iwd~~------~~~~~  396 (458)
                      .... .....|.++|..+|++...+..  ..    ......|+++|+.++... -..+  +.+....+.      .+..+
T Consensus       272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~  351 (465)
T d1xfda1         272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI  351 (465)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred             EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence            3321 1223588899999987665532  21    224567999998654321 1112  234433321      23333


Q ss_pred             EEEeCCCCcEEEE-EEcCCCCEEE-EEeCC--CcEEEEecC
Q 012679          397 AELSGHTSRVLFM-AQSPDGCTVA-SAAAD--ETLRFWNVF  433 (458)
Q Consensus       397 ~~~~~h~~~V~~l-~~spdg~~l~-s~s~D--g~i~iW~~~  433 (458)
                      ..+....-.|..+ +|++++..|. ++..+  +.-.+|.+.
T Consensus       352 ~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~  392 (465)
T d1xfda1         352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (465)
T ss_dssp             CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence            4444334446564 6888877664 44443  234566654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.80  E-value=4.1e-06  Score=76.03  Aligned_cols=239  Identities=9%  Similarity=0.101  Sum_probs=144.1

Q ss_pred             eeccC-CCeEEEEc--------CCEEEEEECCCCCeeeEEEec--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc
Q 012679          147 LDWGS-SNVLAIAL--------GSTVYLWDASDGTTSELVTVD--DENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN  215 (458)
Q Consensus       147 ~~~~~-~~~la~~~--------d~~v~iwd~~~~~~~~~~~~~--~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~  215 (458)
                      ..|++ ++++.+..        ++.|..||..++.........  ...+.-..++|.++|+.|+++...+.|..+|....
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSC
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCc
Confidence            45555 45555543        467999999888753332211  11234678999999998888887778888887665


Q ss_pred             eeeEEecCCCc---ccEEEEEeC--CCeEEEEeC---------------CCcEEEEEccCCCeeEEEEcccccceEeEEE
Q 012679          216 RQLRTLRGGHR---SRVGSLAWN--NHILTTGGM---------------DGLIINNDVRVRDHIVETYRGHNQEVCGLKW  275 (458)
Q Consensus       216 ~~~~~~~~~~~---~~v~~l~~~--~~~l~sg~~---------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  275 (458)
                      ...........   ...+.++++  |.+.++-..               .|.|..++..  .... .+...-..-++++|
T Consensus       103 ~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~-~~~~~~~~pNGi~~  179 (314)
T d1pjxa_         103 FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMI-QVDTAFQFPNGIAV  179 (314)
T ss_dssp             EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEE-EEEEEESSEEEEEE
T ss_pred             EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--Ccee-EeeCCcceeeeeEE
Confidence            43221111011   124567774  555555321               2344444433  2212 22222334578999


Q ss_pred             cCCCC-----EEEEEECCCcEEEEeCCCCCCCCcceeeeeecc-cccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          276 SASGQ-----QLASGGNDNLLHIWDRSMASSNSVTQWLHRLEE-HTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       276 spd~~-----~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      +|++.     ++++-+..+.|..||+.........+....+.. +......+++..++..+++..   ..+.|.+||...
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~---~~g~I~~~dp~~  256 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW---GSSHIEVFGPDG  256 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE---TTTEEEEECTTC
T ss_pred             CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc---CCCEEEEEeCCC
Confidence            98765     445556788899998764432111111112221 223456789998765444443   578999999998


Q ss_pred             CCeeEEEeCC-CCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCC
Q 012679          350 GACLNSVDTG-SQVCALLWNKNERELLSSHGFTQNQLTLWKYPS  392 (458)
Q Consensus       350 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~  392 (458)
                      ++.+..+..+ ...++++|.++++.|+++. ...|.|..++++.
T Consensus       257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~-~~~g~i~~~~~~~  299 (314)
T d1pjxa_         257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-HENNAVWKFEWQR  299 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEE-TTTTEEEEEECSS
T ss_pred             CEEEEEEECCCCCEEEEEEeCCCCEEEEEE-CCCCcEEEEECCC
Confidence            8887777664 5789999999998777653 3567888877653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=8e-06  Score=72.64  Aligned_cols=230  Identities=9%  Similarity=0.141  Sum_probs=149.7

Q ss_pred             eeccC-CCeEEEE-cCCEEEEEECCCCCeeeEEEec------CCCCCEEEEEEcCCC-CEEEEE-ecCCeEEEEeCCCce
Q 012679          147 LDWGS-SNVLAIA-LGSTVYLWDASDGTTSELVTVD------DENGPVTSVNWAPDG-RHIAIG-LNNCQVQLWDSTANR  216 (458)
Q Consensus       147 ~~~~~-~~~la~~-~d~~v~iwd~~~~~~~~~~~~~------~h~~~V~~v~~s~~g-~~la~g-~~dg~v~iwd~~~~~  216 (458)
                      ++.++ ++++.+- ..+.|++||.+ |+.  +..+.      +.......+++..+. .++++. +.++.|.+++. .++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~  103 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKE-GRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ  103 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCC-CCE--EEEecccCCCcccccccccccccccccccceeccCCccccccccc-ccc
Confidence            44444 4454443 45789999865 554  22221      112235566666554 444433 34557777775 566


Q ss_pred             eeEEecCCCcccEEEEEeC--CCeEEEEeCCCcEEEEEccCCCeeEEEE--cccccceEeEEEcCCCCEEEEEECCCcEE
Q 012679          217 QLRTLRGGHRSRVGSLAWN--NHILTTGGMDGLIINNDVRVRDHIVETY--RGHNQEVCGLKWSASGQQLASGGNDNLLH  292 (458)
Q Consensus       217 ~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~sg~~dg~i~  292 (458)
                      ....+..........++.+  +.++++....+.+.+++....  .+..+  ..+......+++.++++.+++....+.|+
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--eeecccccccccccceeeeccceeEEeeecccccee
Confidence            6677655456667778874  677777777778888876532  23433  34566788899999999988888899999


Q ss_pred             EEeCCCCCCCCcceeeeeec--ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEE
Q 012679          293 IWDRSMASSNSVTQWLHRLE--EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLW  367 (458)
Q Consensus       293 iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~  367 (458)
                      +||.... .      +.++.  +.......|++.+++. ++++.. ..++.|.+++ .+|+.+.++...   .....+++
T Consensus       182 ~~d~~G~-~------~~~~g~~g~~~~P~giavD~~G~-i~Vad~-~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         182 VFNYEGQ-Y------LRQIGGEGITNYPIGVGINSNGE-ILIADN-HNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             EEETTCC-E------EEEESCTTTSCSEEEEEECTTCC-EEEEEC-SSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             eeecCCc-e------eeeecccccccCCcccccccCCe-EEEEEC-CCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence            9997542 1      33332  3344567899999875 555532 1456799998 468888777543   35789999


Q ss_pred             cCCCCeEEEEecCCCCcEEEEeCCCcee
Q 012679          368 NKNERELLSSHGFTQNQLTLWKYPSMVK  395 (458)
Q Consensus       368 s~~~~~l~~~~g~~d~~i~iwd~~~~~~  395 (458)
                      .++|..+++ .  .++.|++|.+....+
T Consensus       252 ~~dG~l~V~-~--~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         252 MDDGSVVLA-S--KDYRLYIYRYVQLAP  276 (279)
T ss_dssp             ETTTEEEEE-E--TTTEEEEEECSCCCC
T ss_pred             eCCCcEEEE-e--CCCeEEEEEeeeecC
Confidence            999975543 3  578999999877643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.68  E-value=3.8e-05  Score=68.71  Aligned_cols=218  Identities=8%  Similarity=-0.016  Sum_probs=141.0

Q ss_pred             EEEEcCCCC-EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC-CCeEEEEeCCCcEEEEEccCCCeeEEE-Ec
Q 012679          188 SVNWAPDGR-HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN-NHILTTGGMDGLIINNDVRVRDHIVET-YR  264 (458)
Q Consensus       188 ~v~~s~~g~-~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~  264 (458)
                      +..|.+... +..+--..+.|.-||..+++.. .+.  ....+.++++. ...|+.++.+ .|.++|..++...... ..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~--~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE--CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeee
Confidence            456877444 4444446788999999887653 333  34567788883 3444455555 5888998877632111 11


Q ss_pred             c--cccceEeEEEcCCCCEEEEEEC----CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC
Q 012679          265 G--HNQEVCGLKWSASGQQLASGGN----DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG  338 (458)
Q Consensus       265 ~--h~~~v~~l~~spd~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~  338 (458)
                      .  ....++.+.+.|+|++.++...    .+.-.+|.+..+..       ..+...-..-..++|++++..++++.+  .
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~-------~~~~~~~~~~Ng~~~s~d~~~l~~~dt--~  168 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-------TKLFADISIPNSICFSPDGTTGYFVDT--K  168 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-------EEEEEEESSEEEEEECTTSCEEEEEET--T
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE-------EEEeeccCCcceeeecCCCceEEEeec--c
Confidence            1  1235788999999997766542    22345555544432       222222334578999999888888876  7


Q ss_pred             CCeEEEEECCCC------CeeEEEe---CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEE
Q 012679          339 DRCIKFWNTHTG------ACLNSVD---TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFM  409 (458)
Q Consensus       339 d~~i~lwd~~~~------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l  409 (458)
                      .+.|..+++...      +......   .......+++..+|+..++..  ..+.|..|| +.++.+..+.-....++++
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~--~~g~V~~~d-p~G~~~~~i~lP~~~~T~~  245 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW--GEGAVDRYD-TDGNHIARYEVPGKQTTCP  245 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--TTTEEEEEC-TTCCEEEEEECSCSBEEEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee--CCCceEEec-CCCcEeeEecCCCCceEEE
Confidence            888999886431      1111122   234478899999999887743  578899999 6788888887666789999


Q ss_pred             EEc-CCCCEEEEE
Q 012679          410 AQS-PDGCTVASA  421 (458)
Q Consensus       410 ~~s-pdg~~l~s~  421 (458)
                      +|- ||.+.|+..
T Consensus       246 ~FGG~d~~~LyvT  258 (295)
T d2ghsa1         246 AFIGPDASRLLVT  258 (295)
T ss_dssp             EEESTTSCEEEEE
T ss_pred             EEeCCCCCEEEEE
Confidence            995 676666443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=7.3e-05  Score=67.60  Aligned_cols=229  Identities=9%  Similarity=0.050  Sum_probs=139.9

Q ss_pred             cccceeeccC-CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec----CCeEEEEeCCCc
Q 012679          142 YYLNLLDWGS-SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN----NCQVQLWDSTAN  215 (458)
Q Consensus       142 ~~~~~~~~~~-~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~----dg~v~iwd~~~~  215 (458)
                      +.+..+.|++ ++|+.+. .++.|+.|+.++++...  .+.........+++++||+++++...    .+.+...+....
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~--~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE--EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            3455678876 4566554 57889999988776532  22334556899999999997776543    334666666655


Q ss_pred             eeeEEecC-CCcccEEEEEeC--CCeEEEEeC------CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EE
Q 012679          216 RQLRTLRG-GHRSRVGSLAWN--NHILTTGGM------DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SG  285 (458)
Q Consensus       216 ~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg  285 (458)
                      ........ .-......+.++  |.+.++...      .+.+..++.....  +..+...-...++++|+||++.|. +-
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeeccccceEEEec
Confidence            54443332 123456677774  555554322      1235555544322  233323334567899999998764 44


Q ss_pred             ECCCcEEEEeCCCCCCCCcce--eeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC---
Q 012679          286 GNDNLLHIWDRSMASSNSVTQ--WLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS---  360 (458)
Q Consensus       286 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~---  360 (458)
                      +..+.|..||+..........  ..............+++.+++. ++++..  ..+.|.+||. .|+.+..+....   
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~--~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEE--TTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEc--CCCEEEEECC-CCcEEEEEeCCCcCC
Confidence            567899999986543211100  0011111122356799999765 444443  6889999995 799988886543   


Q ss_pred             ----CeEEEEEcCCCCeEEEEe
Q 012679          361 ----QVCALLWNKNERELLSSH  378 (458)
Q Consensus       361 ----~v~~~~~s~~~~~l~~~~  378 (458)
                          .+++++|.+....++++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCceeeeEEEeCCCCEEEEEc
Confidence                478999999888777654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=0.00013  Score=63.38  Aligned_cols=265  Identities=11%  Similarity=0.115  Sum_probs=180.1

Q ss_pred             eeccCCCeEEEEc----CCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          147 LDWGSSNVLAIAL----GSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       147 ~~~~~~~~la~~~----d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +...++..+++-.    ...|.|.|+.++.......+..     -+.-.+|..+.||.-+ ..+++++|+++.+.++.+.
T Consensus        27 ~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~A-----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~  100 (327)
T d1utca2          27 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT  100 (327)
T ss_dssp             EECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCEEEEEeccCCCceEEEEECCCCCcceecccch-----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE
Confidence            3344455555443    3489999998765322233322     2445679888888876 4489999999999999888


Q ss_pred             CCCcccEEEEEe-CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccc----cceEeEEEcCCCCEEEEEE---C----CCc
Q 012679          223 GGHRSRVGSLAW-NNHILTTGGMDGLIINNDVRVRDHIVETYRGHN----QEVCGLKWSASGQQLASGG---N----DNL  290 (458)
Q Consensus       223 ~~~~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~----~~v~~l~~spd~~~l~sg~---~----dg~  290 (458)
                        ....|.--.| +.+.|+..+. ..|+.|+++....+.+.+..|.    ..|-.-..+++.++++..|   .    .|.
T Consensus       101 --~~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~  177 (327)
T d1utca2         101 --MTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA  177 (327)
T ss_dssp             --CSSCCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred             --cCCCcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEE
Confidence              5667877788 6777777665 5799999976655666666553    4677788889999887544   2    367


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCC--CCcEEEEeC-CCCCCeEEEEECCCCC----e--eEEEeC---
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPF--QSNLLATGG-GGGDRCIKFWNTHTGA----C--LNSVDT---  358 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~ll~s~~-g~~d~~i~lwd~~~~~----~--~~~~~~---  358 (458)
                      +.+|..+...       -+.+++|.+....+....+  ...+++.+. +...+.+++-++....    .  .+..+.   
T Consensus       178 mQLYS~er~~-------sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp  250 (327)
T d1utca2         178 MQLYSVDRKV-------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  250 (327)
T ss_dssp             EEEEETTTTE-------EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             EEEEEeccCc-------CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC
Confidence            8899877654       4677888776666654321  123444332 1244688999886521    1  112211   


Q ss_pred             ----CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 012679          359 ----GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRF  429 (458)
Q Consensus       359 ----~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i  429 (458)
                          +.-..++..++....++..+  .-|.|.+||+.++..+..-+-..+.|...+-..+..=++....+|.|.-
T Consensus       251 pea~~DFPvamqvs~kygiiyviT--K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         251 PEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             TTCTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ccccCCcEEEEEeeccCCEEEEEe--cCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence                23367888898888888765  7899999999999999887777777776666655555666778887653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.61  E-value=8.8e-06  Score=73.27  Aligned_cols=208  Identities=13%  Similarity=0.018  Sum_probs=136.6

Q ss_pred             CceeeEEecCCCcccEEEEEe--CCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcE
Q 012679          214 ANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLL  291 (458)
Q Consensus       214 ~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i  291 (458)
                      ..+.+..+..  ...+..+++  +|+++++...++.|..+|....   ...+......+.+++|++||+++++...++.+
T Consensus        17 ~~~v~~~~p~--~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          17 PAKIITSFPV--NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGWNADSI   91 (302)
T ss_dssp             CEEEEEEECT--TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred             cccEEEECCC--CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCCeEEEecCCceE
Confidence            3444555543  224667777  6789999899999988886643   23444556789999999999999999888999


Q ss_pred             EEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-----------CC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-----------GS  360 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-----------~~  360 (458)
                      ..|+........  ..+.. .........+++.+++ .++++..  .++.+..+|...+........           ..
T Consensus        92 ~~~~~~~~~~~~--~~~~~-~~~~~~~n~i~~~~~g-~~~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1          92 PVVSLVKSDGTV--ETLLT-LPDAIFLNGITPLSDT-QYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             EEEEEECTTSCE--EEEEE-CTTCSCEEEEEESSSS-EEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEEEecccccce--eeccc-cCCccccceeEEccCC-CEEeecc--ccccceeeeccCCcceeEecCCccceeeccCccc
Confidence            888865543311  11111 1234567889999975 5666654  678899999887754332221           12


Q ss_pred             CeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEE--EeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 012679          361 QVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAE--LSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       361 ~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ....+.++  +..++.+ ....+.|..++.........  ...+......++++++|++.++...++.|..++....
T Consensus       166 ~~ngi~~~--~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         166 AANGLKRF--GNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             SEEEEEEE--TTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             cccccccc--CCceeee-cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            34566665  4455544 34678888888765432211  1112334567999999998888888999888876544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=2.2e-05  Score=69.08  Aligned_cols=233  Identities=11%  Similarity=0.057  Sum_probs=119.0

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec-CC-----eEEEEeCCCceeeEEecCC
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN-NC-----QVQLWDSTANRQLRTLRGG  224 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~-dg-----~v~iwd~~~~~~~~~~~~~  224 (458)
                      ++.+ +-..++.|++.|+.+++..++   ..+.+.+...+|||||++||.... ++     .|.+++..+++..+.... 
T Consensus        12 G~~v-~f~~~~dl~~~d~~~g~~~~L---t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~-   86 (281)
T d1k32a2          12 GDRI-IFVCCDDLWEHDLKSGSTRKI---VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF-   86 (281)
T ss_dssp             TTEE-EEEETTEEEEEETTTCCEEEE---ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC-
T ss_pred             CCEE-EEEeCCcEEEEECCCCCEEEE---ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec-
Confidence            3444 444667899999999986444   445667899999999999987643 21     355556555544322110 


Q ss_pred             CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC------CcEEEEeCCC
Q 012679          225 HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND------NLLHIWDRSM  298 (458)
Q Consensus       225 ~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d------g~i~iwd~~~  298 (458)
                       ..                                  .............|+|||+.|+.....      ..+...+...
T Consensus        87 -~~----------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  131 (281)
T d1k32a2          87 -SG----------------------------------KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG  131 (281)
T ss_dssp             -CE----------------------------------EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGG
T ss_pred             -CC----------------------------------CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCC
Confidence             00                                  000111223456788888877765332      1233333322


Q ss_pred             CCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCC---------CCeEEEEECCCCCeeEEEeCCCCeEEEEEcC
Q 012679          299 ASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGG---------DRCIKFWNTHTGACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       299 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~---------d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~  369 (458)
                      ...       ..  .+...... .|.+++...++......         ............................+++
T Consensus       132 ~~~-------~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (281)
T d1k32a2         132 INF-------VP--LNLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG  201 (281)
T ss_dssp             TEE-------EE--CCSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred             cee-------EE--ecCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec
Confidence            211       11  11122222 23333444444332100         0112222222233333333444455556665


Q ss_pred             CCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcc
Q 012679          370 NERELLSSHGFTQNQLTLWKYPSMVKMAELSGH-TSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQV  438 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~  438 (458)
                      +.. +..........|.++|+.+.+.. .+..+ ...+  ..|+|||+.|+.. .++.|+++|+.+++..
T Consensus       202 ~~~-~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         202 HRI-YFITDIDGFGQIYSTDLDGKDLR-KHTSFTDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TEE-EEEECTTSSCEEEEEETTSCSCE-ECCCCCSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             ccc-ceecccccccceEEEeCCCCceE-EeecCCCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            532 22222223456888888766543 33322 2233  4689999998764 5688999998776644

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00043  Score=61.57  Aligned_cols=221  Identities=9%  Similarity=0.003  Sum_probs=139.9

Q ss_pred             eeccC--CCeEEEE-cCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecC
Q 012679          147 LDWGS--SNVLAIA-LGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRG  223 (458)
Q Consensus       147 ~~~~~--~~~la~~-~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~  223 (458)
                      .-|+.  +.++-+- ..+.|+.||..+++.. ...+   ...+.++++.++|.+++ ++.+ .|.++|..+++.......
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~---~~~~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECS
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC---CCCcEEEEEecCCCEEE-EEeC-ccEEeecccceeeEEeee
Confidence            34553  4455544 4689999999988752 3333   44689999999987665 4555 589999998875443321


Q ss_pred             ---CCcccEEEEEeC--CCeEEEEeC----CCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEE-EEECCCcEEE
Q 012679          224 ---GHRSRVGSLAWN--NHILTTGGM----DGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLA-SGGNDNLLHI  293 (458)
Q Consensus       224 ---~~~~~v~~l~~~--~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-sg~~dg~i~i  293 (458)
                         .....+..+..+  |.+.++...    .+.-.+|.+..+. ..... ..-...+.+.|+++++.+. +-+..+.|..
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEEEe-eccCCcceeeecCCCceEEEeecccceeeE
Confidence               122457777774  554444322    2334556655443 22222 2234567899999998665 4456788998


Q ss_pred             EeCCCCCCCC--cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEc-C
Q 012679          294 WDRSMASSNS--VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWN-K  369 (458)
Q Consensus       294 wd~~~~~~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s-~  369 (458)
                      +++.......  .........+..+....+++..++...++.-   ..+.|..||. .|+.+..+..+ ..+++++|- +
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~---~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~  250 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP  250 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee---CCCceEEecC-CCcEeeEecCCCCceEEEEEeCC
Confidence            8875432211  1111222334455678899998776555543   4678999994 78999999876 468999996 6


Q ss_pred             CCCeEEEEec
Q 012679          370 NERELLSSHG  379 (458)
Q Consensus       370 ~~~~l~~~~g  379 (458)
                      +.+.|+++++
T Consensus       251 d~~~LyvTta  260 (295)
T d2ghsa1         251 DASRLLVTSA  260 (295)
T ss_dssp             TSCEEEEEEB
T ss_pred             CCCEEEEEEC
Confidence            7788877654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.30  E-value=0.00098  Score=60.96  Aligned_cols=224  Identities=11%  Similarity=0.074  Sum_probs=140.2

Q ss_pred             EEEEcC---CCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccEEEEEe----CCCeEEEEeCCC-------------
Q 012679          188 SVNWAP---DGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW----NNHILTTGGMDG-------------  246 (458)
Q Consensus       188 ~v~~s~---~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~----~~~~l~sg~~dg-------------  246 (458)
                      .+++..   ||++|++.. .++.|.+.|+.+.+..+.+.......+..+..    +..+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   789988876 57799999999999877555435566676665    246777766533             


Q ss_pred             -----cEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC---------------------------------
Q 012679          247 -----LIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND---------------------------------  288 (458)
Q Consensus       247 -----~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d---------------------------------  288 (458)
                           .+.+.|..+.+...+...  .+....+.++++|+++++.+.+                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 356778876654333332  3456689999999999887643                                 


Q ss_pred             -----CcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCC------------
Q 012679          289 -----NLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGA------------  351 (458)
Q Consensus       289 -----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~------------  351 (458)
                           +.+.+-|.+.......   +..+. -......+..+|||.++++++.  .+.++.++|++.-.            
T Consensus       247 k~~eingV~VVD~~~~~~~~v---~~yIP-VpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLF---TRYIP-IANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSS---EEEEE-EESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             CcEEeCCceeecccccCCcce---eEEEe-cCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCcccc
Confidence                 1223333332111000   11111 1223457899999999999876  99999999986421            


Q ss_pred             eeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCc----------eeeEEEeCCCCcEEEE------EEcCCC
Q 012679          352 CLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSM----------VKMAELSGHTSRVLFM------AQSPDG  415 (458)
Q Consensus       352 ~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~----------~~~~~~~~h~~~V~~l------~~spdg  415 (458)
                      .......+-.....+|+..|.-..+  -+-|.+|.-|++...          ..+..+.-|-.. -.+      ...|||
T Consensus       321 ~~~e~elglgPLht~fd~~g~ayts--lfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~~g~t~~~dg  397 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTS--LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTVMGETLDATN  397 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEE--ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEETTTTSTTCCS
T ss_pred             EEeecccCcCccccccCCCceEEEE--eeccceEEEEecchhhhhhccccCCcceeccccccCC-CCCccCcCCcCCCCC
Confidence            2223334455667788888743333  568999999998432          344455444322 222      236799


Q ss_pred             CEEEEEe
Q 012679          416 CTVASAA  422 (458)
Q Consensus       416 ~~l~s~s  422 (458)
                      ++|++..
T Consensus       398 k~l~~~n  404 (459)
T d1fwxa2         398 DWLVCLS  404 (459)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEec
Confidence            9999886

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=0.0028  Score=55.03  Aligned_cols=247  Identities=8%  Similarity=-0.007  Sum_probs=151.5

Q ss_pred             eEEEEcCCEEEEEECCCCCee---eEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCceeeEEecCCCcccE
Q 012679          154 VLAIALGSTVYLWDASDGTTS---ELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANRQLRTLRGGHRSRV  229 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~---~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~v  229 (458)
                      +|..+..+.|+-.+++.....   ....+..+...+..++|.+..+.|.... .++.|+..++........+.. ....+
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-~~~~p   81 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-DLGSP   81 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-TCCCE
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-ccccc
Confidence            455566678877777654321   1112222334578899998777776664 557788888876655444443 33456


Q ss_pred             EEEEeC--CCeE-EEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-Cc--EEEEeCCCCCCCC
Q 012679          230 GSLAWN--NHIL-TTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-NL--LHIWDRSMASSNS  303 (458)
Q Consensus       230 ~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-g~--i~iwd~~~~~~~~  303 (458)
                      .+++++  +..| ++-...+.|.+.++..... .............+++.|...++...... +.  |.--++.....  
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--  158 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--  158 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--
Confidence            666664  4444 5556678999999886553 22233334668899999977777654332 23  44345443322  


Q ss_pred             cceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          304 VTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       304 ~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                          .......-....+|++.+.+..++.+-.  ..+.|...|+........+.......++++.  +..|+.+ ....+
T Consensus       159 ----~~i~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwt-d~~~~  229 (263)
T d1npea_         159 ----RILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTN  229 (263)
T ss_dssp             ----EEEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTT
T ss_pred             ----eeeeeecccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEE-ECCCC
Confidence                1112223345678999988787877765  6789999999765554444444455677775  4555554 33577


Q ss_pred             cEEEEeCCCceeeEEEeCC-CCcEEEEEEcC
Q 012679          384 QLTLWKYPSMVKMAELSGH-TSRVLFMAQSP  413 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~h-~~~V~~l~~sp  413 (458)
                      .|...|..+++.+..+..+ ......+++.+
T Consensus       230 ~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         230 SVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            8999999888877766432 24455565544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.76  E-value=0.0059  Score=55.72  Aligned_cols=226  Identities=11%  Similarity=0.061  Sum_probs=142.4

Q ss_pred             EEEEecCCeEEEEeCCCceeeEEecC---------CC-------------------------------cccEEEEEe---
Q 012679          198 IAIGLNNCQVQLWDSTANRQLRTLRG---------GH-------------------------------RSRVGSLAW---  234 (458)
Q Consensus       198 la~g~~dg~v~iwd~~~~~~~~~~~~---------~~-------------------------------~~~v~~l~~---  234 (458)
                      +.+|+..|.|+|+-+.+++.+..+..         +.                               ..--..+++   
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            56678888888888888777666542         00                               000113444   


Q ss_pred             --CCCeEEEEe-CCCcEEEEEccCCCeeEEEE-cccccceEeEEEc--CCCCEEEEEECCC------------------c
Q 012679          235 --NNHILTTGG-MDGLIINNDVRVRDHIVETY-RGHNQEVCGLKWS--ASGQQLASGGNDN------------------L  290 (458)
Q Consensus       235 --~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~l~~s--pd~~~l~sg~~dg------------------~  290 (458)
                        +|++|++.. .++.|.+.|+++.+. .+.. ......+.++...  |+..|++.++.+.                  .
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt-~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceee-eEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              355666554 678999999987764 2222 2334556666664  4566777777633                  2


Q ss_pred             EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC-------------------------------
Q 012679          291 LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD-------------------------------  339 (458)
Q Consensus       291 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d-------------------------------  339 (458)
                      +.++|..+.+.      ..++.- ......++++++++++++++-.+..                               
T Consensus       175 ~t~ID~~tm~V------~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         175 FTAVDADKWEV------AWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             EEEEETTTTEE------EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             EEEEecCCceE------EEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence            56677766543      222211 2345678999999999988742221                               


Q ss_pred             ----CeEEEEECCC---CCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCcee------------eEEEe
Q 012679          340 ----RCIKFWNTHT---GACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVK------------MAELS  400 (458)
Q Consensus       340 ----~~i~lwd~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~------------~~~~~  400 (458)
                          +.+.+.|.++   ...+..+..+.....+..+|||++++++ |..+.++.|+|+.....            ..+.+
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~Va-GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEe-CCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                1234444443   1233445555667788999999999998 66899999999864321            11111


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVF  433 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~  433 (458)
                       ..-..+.-+|+.+|....|---|..|.-|++.
T Consensus       327 -lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             -cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence             23345788999998666666689999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.76  E-value=0.0053  Score=59.51  Aligned_cols=283  Identities=11%  Similarity=0.071  Sum_probs=163.8

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCC----------CE-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENG----------PV-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~----------~V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +.+++++.++.|+-.|.++|+.  +.++..+..          .+ ..++.  .+..++.++.+|.|.-.|..+++.+..
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~--lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~  142 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKE--LWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS  142 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCE--EEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCE--EEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEec
Confidence            5677788899999999999987  554421110          00 11111  245788899999999999999999887


Q ss_pred             ecCCCcccE-----EEEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEccc-----------------------
Q 012679          221 LRGGHRSRV-----GSLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRGH-----------------------  266 (458)
Q Consensus       221 ~~~~~~~~v-----~~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h-----------------------  266 (458)
                      .........     .-+.+ ...++.+..      .|.|.-+|.++++.+-+.....                       
T Consensus       143 ~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  221 (560)
T d1kv9a2         143 QQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (560)
T ss_dssp             EECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             cCccCcccceeeeeeeeee-cCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence            763111111     11112 334444432      3679999999988654433210                       


Q ss_pred             ------ccc-eEeEEEcCCCCEEEEEEC-------------------CCcEEEEeCCCCCCCCcceeeeeeccccc----
Q 012679          267 ------NQE-VCGLKWSASGQQLASGGN-------------------DNLLHIWDRSMASSNSVTQWLHRLEEHTS----  316 (458)
Q Consensus       267 ------~~~-v~~l~~spd~~~l~sg~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----  316 (458)
                            ... -..+++.+...++..+..                   ...|.-.|+++++.    .+..+...|..    
T Consensus       222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~----~W~~Q~~~~D~wd~d  297 (560)
T d1kv9a2         222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL----AWHYQVTPGDSWDFT  297 (560)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE----EEEEESSTTCCSCCC
T ss_pred             cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccce----eEEEecccccccccc
Confidence                  011 123456666666654432                   12455556666654    22222222221    


Q ss_pred             -----ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC------------------------------
Q 012679          317 -----AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ------------------------------  361 (458)
Q Consensus       317 -----~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~------------------------------  361 (458)
                           ....+........+++.+.  .+|.+.++|..+|+++........                              
T Consensus       298 ~~~~~~l~~~~~~g~~~~~v~~~~--k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p  375 (560)
T d1kv9a2         298 ATQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP  375 (560)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred             ccceeeeeeeecCCceeeeeeecC--ccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeee
Confidence                 1112222211123455444  899999999999998865532210                              


Q ss_pred             -------eEEEEEcCCCCeEEEEec----------------------------------CCCCcEEEEeCCCceeeEEEe
Q 012679          362 -------VCALLWNKNERELLSSHG----------------------------------FTQNQLTLWKYPSMVKMAELS  400 (458)
Q Consensus       362 -------v~~~~~s~~~~~l~~~~g----------------------------------~~d~~i~iwd~~~~~~~~~~~  400 (458)
                             -...+++|+...+++...                                  ...|.|.-||+.+++.+.+..
T Consensus       376 ~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~  455 (560)
T d1kv9a2         376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP  455 (560)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeecc
Confidence                   123456676666654321                                  012568889999999887765


Q ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCC
Q 012679          401 GHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKP  446 (458)
Q Consensus       401 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~  446 (458)
                      .. .....-.++-.|.+++.|+.||.++-+|..+++++.+...+..
T Consensus       456 ~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~  500 (560)
T d1kv9a2         456 YP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (560)
T ss_dssp             ES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence            22 1111112233566888899999999999999999887655443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.0099  Score=51.32  Aligned_cols=232  Identities=9%  Similarity=-0.021  Sum_probs=142.3

Q ss_pred             CEEEEEecCCeEEEEeCCCceee-----EEecCCCcccEEEEEeC--CC-eEEEEeCCCcEEEEEccCCCeeEEEEcccc
Q 012679          196 RHIAIGLNNCQVQLWDSTANRQL-----RTLRGGHRSRVGSLAWN--NH-ILTTGGMDGLIINNDVRVRDHIVETYRGHN  267 (458)
Q Consensus       196 ~~la~g~~dg~v~iwd~~~~~~~-----~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~  267 (458)
                      .+|+.+.. +.|+-.+++.....     ..+.. +...+..|+++  .+ ++.+-..++.|...++..... ........
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~-~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDL   78 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTC
T ss_pred             CEEEEeCC-CeEEEEECCCcccccccccccccc-CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEecc
Confidence            44554443 36666666443211     11222 34456778885  44 444445677888888876543 23333334


Q ss_pred             cceEeEEEcCCCCEEE-EEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEE
Q 012679          268 QEVCGLKWSASGQQLA-SGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWN  346 (458)
Q Consensus       268 ~~v~~l~~spd~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd  346 (458)
                      ..+.++++..-+..|. +-...+.|.+.++.....      ...+.........++++|....++.+-.|.....|.--+
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceE------EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            5688999987666665 445677999999876543      122223335678999999888888876543444565556


Q ss_pred             CCCCCeeEEEe-CCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCC
Q 012679          347 THTGACLNSVD-TGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADE  425 (458)
Q Consensus       347 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg  425 (458)
                      +.......... .-.....+++++.++.|+.+. ...+.|...++........+.+... ..+|++. ++....+-...+
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d-~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD-AGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTT
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEe-CCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCC
Confidence            65444333332 235678999999888887763 3568899999976655444554333 4578875 344445545667


Q ss_pred             cEEEEecCCCCccc
Q 012679          426 TLRFWNVFGAPQVI  439 (458)
Q Consensus       426 ~i~iW~~~~~~~~~  439 (458)
                      .|...|...+....
T Consensus       230 ~I~~~~~~~g~~~~  243 (263)
T d1npea_         230 SVIAMDLAISKEMD  243 (263)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCccce
Confidence            88888887766543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.75  E-value=0.0042  Score=56.77  Aligned_cols=257  Identities=12%  Similarity=0.088  Sum_probs=131.4

Q ss_pred             EEEEEECCCCCeeeEEEec-CCCCCEEEEEEcCCCCEEEEEecC-CeEEEEeCCCceeeEEecCC-CcccEEEEEe-CCC
Q 012679          162 TVYLWDASDGTTSELVTVD-DENGPVTSVNWAPDGRHIAIGLNN-CQVQLWDSTANRQLRTLRGG-HRSRVGSLAW-NNH  237 (458)
Q Consensus       162 ~v~iwd~~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~la~g~~d-g~v~iwd~~~~~~~~~~~~~-~~~~v~~l~~-~~~  237 (458)
                      .+.+||..++++....... .+.......++.++|++++.|+.+ ..+.+||..+..-...-... .......... ++.
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~  132 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  132 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence            4789999998875544332 233334466788999999988655 48999998877643322110 1112223333 788


Q ss_pred             eEEEEeCC------CcEEEEEccCCCeeEEEEcc----------ccc-----ceEeEEEcCCCCEEEEEECCCcEEEEeC
Q 012679          238 ILTTGGMD------GLIINNDVRVRDHIVETYRG----------HNQ-----EVCGLKWSASGQQLASGGNDNLLHIWDR  296 (458)
Q Consensus       238 ~l~sg~~d------g~i~vwd~~~~~~~~~~~~~----------h~~-----~v~~l~~spd~~~l~sg~~dg~i~iwd~  296 (458)
                      +++.|+.+      ..+.+||..+..-  ..+..          +..     .-..+...++|+.++.++.++.+.++|.
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~  210 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  210 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             eeeeccccccccccceeeeecCCCCce--eecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCc
Confidence            88888753      3688999887642  11110          000     0111223456777777777777777776


Q ss_pred             CCCCCCCcceeeeeeccccc--ceeEEEecCCCCcEEEEeCCCC------CCeEEEEECCCCC---eeEEE----eCCCC
Q 012679          297 SMASSNSVTQWLHRLEEHTS--AVKAIAWCPFQSNLLATGGGGG------DRCIKFWNTHTGA---CLNSV----DTGSQ  361 (458)
Q Consensus       297 ~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~ll~s~~g~~------d~~i~lwd~~~~~---~~~~~----~~~~~  361 (458)
                      .................+..  .-.++.+......+++.|++..      .....+.+.....   .....    .....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~  290 (387)
T d1k3ia3         211 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART  290 (387)
T ss_dssp             TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred             ccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc
Confidence            65432110000000000111  1123333333456666664211      1123333333211   11111    11112


Q ss_pred             eEEEEEcCCCCeEEEEecCC------C----CcEEEEeCCCcee--eEEEeCCCCcE--EEEEEcCCCCEEEEEeC
Q 012679          362 VCALLWNKNERELLSSHGFT------Q----NQLTLWKYPSMVK--MAELSGHTSRV--LFMAQSPDGCTVASAAA  423 (458)
Q Consensus       362 v~~~~~s~~~~~l~~~~g~~------d----~~i~iwd~~~~~~--~~~~~~h~~~V--~~l~~spdg~~l~s~s~  423 (458)
                      -.+....++++.+++. |..      +    ..+.+||..+.+-  +..+.  ..+.  ....+.+||+.++.|+.
T Consensus       291 ~~~~~~~~dg~i~v~G-G~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~--~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         291 FHTSVVLPDGSTFITG-GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS--IVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SCEEEECTTSCEEEEC-CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred             cceeeeccCCeEEEEC-CcccCccCCCCcEeceEEEEECCCCeEEECCCCC--CcccceEEEEECCCCEEEEEeCC
Confidence            3355666888866653 321      1    2578899766542  22221  1111  12345799999999884

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.71  E-value=0.0028  Score=61.61  Aligned_cols=283  Identities=10%  Similarity=0.044  Sum_probs=156.2

Q ss_pred             CCeEEEEc-CCEEEEEECC-CCCeeeEEEecCCCC----CE-------EEEEEcCCCCEEEEEecCCeEEEEeCCCceee
Q 012679          152 SNVLAIAL-GSTVYLWDAS-DGTTSELVTVDDENG----PV-------TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQL  218 (458)
Q Consensus       152 ~~~la~~~-d~~v~iwd~~-~~~~~~~~~~~~h~~----~V-------~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~  218 (458)
                      +.+++++. ++.|+-.|.. +|+.  +.++.....    .+       ..+++.  +..|+.++.||.|.-.|.++++.+
T Consensus        63 g~vyv~t~~~~~v~Alda~~tG~~--~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~  138 (571)
T d2ad6a1          63 DMMYVHSAFPNNTYALNLNDPGKI--VWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSE--EEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEecCCCCeEEEEeCCCCCce--EEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhh
Confidence            33444443 5788888874 6876  444321100    00       123332  346888999999999999999988


Q ss_pred             EEecCCC--c-ccEE--EEEeCCCeEEEEe------CCCcEEEEEccCCCeeEEEEccc---------------------
Q 012679          219 RTLRGGH--R-SRVG--SLAWNNHILTTGG------MDGLIINNDVRVRDHIVETYRGH---------------------  266 (458)
Q Consensus       219 ~~~~~~~--~-~~v~--~l~~~~~~l~sg~------~dg~i~vwd~~~~~~~~~~~~~h---------------------  266 (458)
                      .......  . ..++  -+.+. ..++.+.      ..|.|.-+|+++++.+-+.....                     
T Consensus       139 w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         139 WEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             ccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            7664311  1 1111  12223 4444554      36789999999988654322110                     


Q ss_pred             ---------------ccce-EeEEEcCCCCEEEEEEC----------------CCcEEEEeCCCCCCCCcceeeeeeccc
Q 012679          267 ---------------NQEV-CGLKWSASGQQLASGGN----------------DNLLHIWDRSMASSNSVTQWLHRLEEH  314 (458)
Q Consensus       267 ---------------~~~v-~~l~~spd~~~l~sg~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~~h  314 (458)
                                     ...+ ...++.+...++..+..                ...+.-.|.++++.    .+..+...|
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~----~W~~q~~~~  293 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA----KWGYQKTPH  293 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE----EEEEESSTT
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhh----eecccccCc
Confidence                           0111 23456666666665544                23466667777664    111221111


Q ss_pred             c--------c-ceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-------------------------
Q 012679          315 T--------S-AVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-------------------------  360 (458)
Q Consensus       315 ~--------~-~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-------------------------  360 (458)
                      .        . ....+........+++..+  .+|.+.++|..+|+.+...+...                         
T Consensus       294 D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~--k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  371 (571)
T d2ad6a1         294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM  371 (571)
T ss_dssp             CSSCCCCCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred             cccccccccccceeeeeccCccccceeecc--ccceEEEEecCCCcEeeeeccCCcccccccccccccccccCccccccc
Confidence            1        1 1112222221122444544  89999999999999875432110                         


Q ss_pred             ---------------CeEEEEEcCCCCeEEEEec-----------------------------------CCCCcEEEEeC
Q 012679          361 ---------------QVCALLWNKNERELLSSHG-----------------------------------FTQNQLTLWKY  390 (458)
Q Consensus       361 ---------------~v~~~~~s~~~~~l~~~~g-----------------------------------~~d~~i~iwd~  390 (458)
                                     .-...+++|+...+++...                                   ...|.|.-+|+
T Consensus       372 ~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~  451 (571)
T d2ad6a1         372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL  451 (571)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred             ccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEecc
Confidence                           0112456676666554210                                   01246778888


Q ss_pred             CCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCC
Q 012679          391 PSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKP  446 (458)
Q Consensus       391 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~  446 (458)
                      .+++.+.+...-. +..+-.++-.+.++++|+.||.++-+|..+++++.+...+..
T Consensus       452 ~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~  506 (571)
T d2ad6a1         452 TTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             TTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence            8888877654211 111111122466788899999999999999999987655543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.014  Score=50.50  Aligned_cols=234  Identities=9%  Similarity=-0.022  Sum_probs=140.6

Q ss_pred             eEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEeCCCce---eeEEecCCCcccE
Q 012679          154 VLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGL-NNCQVQLWDSTANR---QLRTLRGGHRSRV  229 (458)
Q Consensus       154 ~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~-~dg~v~iwd~~~~~---~~~~~~~~~~~~v  229 (458)
                      ++..+....|+-.++++.+...+.  . ....+.+++|.+..+.|.... ..+.|.-.++....   ....+.......+
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~--~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLI--P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE--C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECCCeEEEEECCCCcceeee--C-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            345556677888999887654442  2 355688999999888777664 45567666654321   1122221122334


Q ss_pred             EEEEe--C-CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC--CCcEEEEeCCCCCCCCc
Q 012679          230 GSLAW--N-NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN--DNLLHIWDRSMASSNSV  304 (458)
Q Consensus       230 ~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~--dg~i~iwd~~~~~~~~~  304 (458)
                      ..|++  - +++.++-...+.|.+.++..... ............+++++|...+|.....  .+.|.-.++.....   
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~---  155 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  155 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce---
Confidence            44554  3 45555556678899999986654 3334444566889999997666655443  34566666554332   


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC---CCeEEEEEcCCCCeEEEEecCC
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG---SQVCALLWNKNERELLSSHGFT  381 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~  381 (458)
                         .......-....++++.+.+..++.+-.  ..+.|...|+............   ....++++.  +..|+.+. ..
T Consensus       156 ---~~l~~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td-~~  227 (266)
T d1ijqa1         156 ---YSLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD-II  227 (266)
T ss_dssp             ---EEEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEE-TT
T ss_pred             ---ecccccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEE-CC
Confidence               1122223345678999998888888765  6789999998765544333332   235566666  34555543 35


Q ss_pred             CCcEEEEeCCCceeeEEEeCC
Q 012679          382 QNQLTLWKYPSMVKMAELSGH  402 (458)
Q Consensus       382 d~~i~iwd~~~~~~~~~~~~h  402 (458)
                      ++.|...+..++.....+...
T Consensus       228 ~~~I~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         228 NEAIFSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             TTEEEEEETTTCCCCEEEECS
T ss_pred             CCeEEEEECCCCcceEEEEcC
Confidence            677777777776655555443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.66  E-value=0.0084  Score=58.15  Aligned_cols=270  Identities=12%  Similarity=0.046  Sum_probs=148.1

Q ss_pred             eeccCCCeEEEEcCCEEEEEECCCCCeeeEEEecCC--CCCEEEEEEcCCCCEEEEEec------CCeEEEEeCCCceee
Q 012679          147 LDWGSSNVLAIALGSTVYLWDASDGTTSELVTVDDE--NGPVTSVNWAPDGRHIAIGLN------NCQVQLWDSTANRQL  218 (458)
Q Consensus       147 ~~~~~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h--~~~V~~v~~s~~g~~la~g~~------dg~v~iwd~~~~~~~  218 (458)
                      +.+..++++.++.++.|+-.|.++|+..-...+...  ...++.--.-.+ ..++++..      .|.|.-+|+.+|+.+
T Consensus       111 ~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             ceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEE
Confidence            445567889999999999999999997433332211  111111101113 34555553      678999999999998


Q ss_pred             EEecCCCc------------------------------------ccE---EEEEeCCCeEEEEeC---------------
Q 012679          219 RTLRGGHR------------------------------------SRV---GSLAWNNHILTTGGM---------------  244 (458)
Q Consensus       219 ~~~~~~~~------------------------------------~~v---~~l~~~~~~l~sg~~---------------  244 (458)
                      ..+.....                                    ..+   .++.....++..+..               
T Consensus       190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~  269 (571)
T d2ad6a1         190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccc
Confidence            87653110                                    011   122223344444433               


Q ss_pred             -CCcEEEEEccCCCeeEEEEcc--cc-------cceEeEEEcCCCC---EEEEEECCCcEEEEeCCCCCCCCcce-----
Q 012679          245 -DGLIINNDVRVRDHIVETYRG--HN-------QEVCGLKWSASGQ---QLASGGNDNLLHIWDRSMASSNSVTQ-----  306 (458)
Q Consensus       245 -dg~i~vwd~~~~~~~~~~~~~--h~-------~~v~~l~~spd~~---~l~sg~~dg~i~iwd~~~~~~~~~~~-----  306 (458)
                       ...+...|+++++..- .++.  |.       .......+..+++   .++.++.+|.+++.|..+++......     
T Consensus       270 ~s~svvAld~~TG~~~W-~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         270 WTMTIWGRDLDTGMAKW-GYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTEEEEEETTTCCEEE-EEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccceeeeeccchhhee-cccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence             2456777888777532 2221  11       1111112222443   45778889999999988776421000     


Q ss_pred             ------------ee--------------eeecccccce--eEEEecCCCCcEEEEeC-----------------------
Q 012679          307 ------------WL--------------HRLEEHTSAV--KAIAWCPFQSNLLATGG-----------------------  335 (458)
Q Consensus       307 ------------~~--------------~~~~~h~~~v--~~l~~~p~~~~ll~s~~-----------------------  335 (458)
                                  ++              .......+..  ...+++|....+++-..                       
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence                        00              0000000000  12456664443332110                       


Q ss_pred             -----------CCCCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC--
Q 012679          336 -----------GGGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH--  402 (458)
Q Consensus       336 -----------g~~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h--  402 (458)
                                 ....|.|.-+|+.+|+.+..........+-...-.+..+++  |..|+.++.+|..+++.+.++.-.  
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~--G~~dg~l~A~Da~tGe~lW~~~l~~~  506 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE--ECCCCeEEEEECCCCcEEEEEECCCC
Confidence                       01225788999999999988766544333223334566665  668999999999999999888532  


Q ss_pred             --CCcEEEEEEcCCCC-EEEEEeC
Q 012679          403 --TSRVLFMAQSPDGC-TVASAAA  423 (458)
Q Consensus       403 --~~~V~~l~~spdg~-~l~s~s~  423 (458)
                        ..+   +.|..||+ ||++...
T Consensus       507 ~~a~P---~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         507 GIGSP---MTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             CCSCC---EEEEETTEEEEEEEEC
T ss_pred             ceecc---eEEEECCEEEEEEEec
Confidence              233   34444775 5555443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.60  E-value=0.0012  Score=57.44  Aligned_cols=114  Identities=7%  Similarity=0.025  Sum_probs=69.1

Q ss_pred             CCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEEC-C-----CcEEEEeCCCCCCCCcceeee
Q 012679          236 NHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGN-D-----NLLHIWDRSMASSNSVTQWLH  309 (458)
Q Consensus       236 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~-d-----g~i~iwd~~~~~~~~~~~~~~  309 (458)
                      |+.++..+ +|.|.+.|+..+..  ..+..+.+.+....|||||+.||.... +     ..|.+++...+..........
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~   88 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG   88 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC
Confidence            77666554 46788889987663  556667778899999999999986543 2     247777776665311100000


Q ss_pred             eecccccceeEEEecCCCCcEEEEeCCC---CCCeEEEEECCCCCe
Q 012679          310 RLEEHTSAVKAIAWCPFQSNLLATGGGG---GDRCIKFWNTHTGAC  352 (458)
Q Consensus       310 ~~~~h~~~v~~l~~~p~~~~ll~s~~g~---~d~~i~lwd~~~~~~  352 (458)
                      ............+|+|++..++.+....   ....+...+...+..
T Consensus        89 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          89 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            1112223456789999988887764321   222355556554443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.60  E-value=0.022  Score=55.39  Aligned_cols=244  Identities=9%  Similarity=0.007  Sum_probs=140.1

Q ss_pred             CCEEEEEecCCeEEEEeCCCceeeEEecCCCcc---cEE-EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEc
Q 012679          195 GRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRS---RVG-SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYR  264 (458)
Q Consensus       195 g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~---~v~-~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~  264 (458)
                      +.+++.++.||.|.-.|.++++.+..+......   .++ .-...+..++.|..      .|.|.-+|+++++.+-+...
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            347889999999999999999999887531111   111 11122455666543      48999999999886543321


Q ss_pred             cc-------------------------------------ccceEeEEEcCCCCEEEEEECC----------------CcE
Q 012679          265 GH-------------------------------------NQEVCGLKWSASGQQLASGGND----------------NLL  291 (458)
Q Consensus       265 ~h-------------------------------------~~~v~~l~~spd~~~l~sg~~d----------------g~i  291 (458)
                      ..                                     ...-..+++.+...++..+..+                ..|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si  280 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence            10                                     0011234556666666655432                336


Q ss_pred             EEEeCCCCCCCCcceeeeeeccccc-------ceeEEEe-cCCCC--cEEEEeCCCCCCeEEEEECCCCCeeEEEeCCCC
Q 012679          292 HIWDRSMASSNSVTQWLHRLEEHTS-------AVKAIAW-CPFQS--NLLATGGGGGDRCIKFWNTHTGACLNSVDTGSQ  361 (458)
Q Consensus       292 ~iwd~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~-~p~~~--~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~~  361 (458)
                      .-.|+++++.    .+..+...|..       ...-+.. ..++.  .+++...  .+|.+.++|..+|+.+...+....
T Consensus       281 vAlD~~TG~~----~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~--k~G~~~vlDr~tG~~i~~~~~~~~  354 (596)
T d1w6sa_         281 FGRDADTGEA----KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDT  354 (596)
T ss_dssp             EEEETTTCCE----EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccccccc----cccccceeccccCCccccceeeeeccccccccccceeccc--cccceeeecCCCCceeeecccccc
Confidence            6667777664    22222222211       1111111 12232  3455554  889999999999998754432100


Q ss_pred             ----------------------------------------eEEEEEcCCCCeEEEEec----------------------
Q 012679          362 ----------------------------------------VCALLWNKNERELLSSHG----------------------  379 (458)
Q Consensus       362 ----------------------------------------v~~~~~s~~~~~l~~~~g----------------------  379 (458)
                                                              -...+++|....+++...                      
T Consensus       355 ~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~  434 (596)
T d1w6sa_         355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (596)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccc
Confidence                                                    012355565555543210                      


Q ss_pred             ---------------CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCC
Q 012679          380 ---------------FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAP  444 (458)
Q Consensus       380 ---------------~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~  444 (458)
                                     -.-|.|.-||..+++.+..... ..++..=.++..|.+++.|+.||.++-+|..+++.+.+...+
T Consensus       435 ~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccccccCcccCcccCCCcceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence                           0014677888888887765531 222222122335778888999999999999999999876544


Q ss_pred             C
Q 012679          445 K  445 (458)
Q Consensus       445 ~  445 (458)
                      .
T Consensus       514 ~  514 (596)
T d1w6sa_         514 S  514 (596)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.55  E-value=0.019  Score=55.34  Aligned_cols=285  Identities=13%  Similarity=0.083  Sum_probs=155.6

Q ss_pred             CCCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcC--CCCEEEEEec------CCeEEEEeCCCceeeEEec
Q 012679          151 SSNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAP--DGRHIAIGLN------NCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       151 ~~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~la~g~~------dg~v~iwd~~~~~~~~~~~  222 (458)
                      .+.++.+..++.|+-.|..+|+..-......+... ..+.-.|  .+..++++..      .|.|.-+|.++++.+..+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~-~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP-YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS-CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccc-eeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            46788889999999999999987433333222111 1111112  1334455432      3679999999999998876


Q ss_pred             CCCc-----------------------------ccE---EEEEeCCCeEEEEeC-------------------CCcEEEE
Q 012679          223 GGHR-----------------------------SRV---GSLAWNNHILTTGGM-------------------DGLIINN  251 (458)
Q Consensus       223 ~~~~-----------------------------~~v---~~l~~~~~~l~sg~~-------------------dg~i~vw  251 (458)
                      ....                             ..+   .++.....++..+..                   ...|...
T Consensus       196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            3110                             011   111112334433321                   2346666


Q ss_pred             EccCCCeeEEEEc-cccc-------ceEeEEEcCCC---CEEEEEECCCcEEEEeCCCCCCCCccee-----eeeec---
Q 012679          252 DVRVRDHIVETYR-GHNQ-------EVCGLKWSASG---QQLASGGNDNLLHIWDRSMASSNSVTQW-----LHRLE---  312 (458)
Q Consensus       252 d~~~~~~~~~~~~-~h~~-------~v~~l~~spd~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~---  312 (458)
                      |+++++....... .|..       ...-+....++   ..++.++.+|.+.++|..+++.......     .....   
T Consensus       276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence            7777764322111 1111       11111122233   3567788899999999888765211000     00000   


Q ss_pred             --------------------cccc--ceeEEEecCCCCcEEEEeC---------------------------------CC
Q 012679          313 --------------------EHTS--AVKAIAWCPFQSNLLATGG---------------------------------GG  337 (458)
Q Consensus       313 --------------------~h~~--~v~~l~~~p~~~~ll~s~~---------------------------------g~  337 (458)
                                          .-.+  .-...+++|+...+++...                                 +.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  435 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence                                0000  0113456665444443221                                 00


Q ss_pred             CCCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCC
Q 012679          338 GDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGC  416 (458)
Q Consensus       338 ~d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~  416 (458)
                      ..|.|.-||+.+|+.+..+.......+-...-.+..+++  |..||.++.+|..+++.+.++.-.... -.-+.+..||+
T Consensus       436 ~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~--G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE--ECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            135788999999999988877665544344455666766  668999999999999999988632211 01134445775


Q ss_pred             -EEEEEeCC--------------------CcEEEEecCCCCcc
Q 012679          417 -TVASAAAD--------------------ETLRFWNVFGAPQV  438 (458)
Q Consensus       417 -~l~s~s~D--------------------g~i~iW~~~~~~~~  438 (458)
                       +|+..+..                    +.|.+|.|....+.
T Consensus       514 qyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~~  556 (560)
T d1kv9a2         514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQL  556 (560)
T ss_dssp             EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCC
T ss_pred             EEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCCC
Confidence             55544432                    35778888655443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.49  E-value=0.039  Score=53.30  Aligned_cols=93  Identities=16%  Similarity=0.112  Sum_probs=62.9

Q ss_pred             CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCC----CCcEEEEEEcCCC
Q 012679          340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGH----TSRVLFMAQSPDG  415 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h----~~~V~~l~~spdg  415 (458)
                      |.|.-||+.+|+.+..+....+...-...-.+..+++  |..|+.++.+|..+++.+.++.-.    ..++   .|..||
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~--G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~---ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVAAPS---TYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETT
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE--ECCCCeEEEEECCCCcEeEEEECCCCccccCE---EEEECC
Confidence            4688899999999988876655443334446777776  668999999999999999888632    2333   344477


Q ss_pred             C-EEEEEeC----------------CCcEEEEecCCCCc
Q 012679          416 C-TVASAAA----------------DETLRFWNVFGAPQ  437 (458)
Q Consensus       416 ~-~l~s~s~----------------Dg~i~iW~~~~~~~  437 (458)
                      + ||+..+.                .+.|.+|.|....+
T Consensus       532 kQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         532 RQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             EEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             EEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            6 4443332                23577777765544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.47  E-value=0.042  Score=50.95  Aligned_cols=249  Identities=10%  Similarity=0.078  Sum_probs=133.9

Q ss_pred             EEEEEEcCCCCEEEEEec-CC----eEEEEeCCCceeeEEecCCCcccEEEEEe--CCCeEEEEeCC-------------
Q 012679          186 VTSVNWAPDGRHIAIGLN-NC----QVQLWDSTANRQLRTLRGGHRSRVGSLAW--NNHILTTGGMD-------------  245 (458)
Q Consensus       186 V~~v~~s~~g~~la~g~~-dg----~v~iwd~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~d-------------  245 (458)
                      +..+++|||++++|.+-. +|    .|+++|+.+++.+....  .......++|  ++..|+....+             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            455678999999987643 33    69999999998765332  1122356778  45555543322             


Q ss_pred             ---CcEEEEEccCCCee-EEEEcc--cccceEeEEEcCCCCEEEEEEC---CCc--EEEEeCCCCCCCC--cceeeeeec
Q 012679          246 ---GLIINNDVRVRDHI-VETYRG--HNQEVCGLKWSASGQQLASGGN---DNL--LHIWDRSMASSNS--VTQWLHRLE  312 (458)
Q Consensus       246 ---g~i~vwd~~~~~~~-~~~~~~--h~~~v~~l~~spd~~~l~sg~~---dg~--i~iwd~~~~~~~~--~~~~~~~~~  312 (458)
                         ..|..|.+.+.... +..+..  ....+..+..+.++++++....   +..  +.+.|+.......  ...+.....
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               25778877665421 223333  2345677888999999865432   333  4444544332211  111112222


Q ss_pred             ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCe---eEEEeC-CCCeEEEEEcCCCCeEEEEe-cCCCCcEEE
Q 012679          313 EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGAC---LNSVDT-GSQVCALLWNKNERELLSSH-GFTQNQLTL  387 (458)
Q Consensus       313 ~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~---~~~~~~-~~~v~~~~~s~~~~~l~~~~-g~~d~~i~i  387 (458)
                      .....+.-+. +..+..++.+.-+..++.|...++.....   ...+.. ...+..-.+...+.+|+... -.....|.+
T Consensus       285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            2222232222 22233344444334567787778776432   222332 33454444555555665532 122346889


Q ss_pred             EeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCCc
Q 012679          388 WKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAAD----ETLRFWNVFGAPQ  437 (458)
Q Consensus       388 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D----g~i~iW~~~~~~~  437 (458)
                      +++.++..........+.|..+...++...+...-.+    .++.-+|+.+++.
T Consensus       364 ~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            9998877655554445566666655655544332222    6788888877653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.45  E-value=0.015  Score=56.31  Aligned_cols=282  Identities=10%  Similarity=0.072  Sum_probs=156.9

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCC----------CCE-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEE
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDEN----------GPV-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRT  220 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~----------~~V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~  220 (458)
                      +.+++++.++.|+-+|.++|+.  +.++....          ..+ ..+.+.  +..++.++.|+.+.-.|..+++.+..
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~--~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNR--IWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEE--EEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCe--EEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence            5567777789999999999987  55443110          001 112222  34677888999999999999998876


Q ss_pred             ecCC-Cc-ccEE----EEEeCCCeEEEEeC------CCcEEEEEccCCCeeEEEEccc----------------------
Q 012679          221 LRGG-HR-SRVG----SLAWNNHILTTGGM------DGLIINNDVRVRDHIVETYRGH----------------------  266 (458)
Q Consensus       221 ~~~~-~~-~~v~----~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~h----------------------  266 (458)
                      .... +. ..+.    .+.+ ...+++|+.      .|.|..+|.++++.+-+.....                      
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~  232 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             ccCccCCcceEEeecceEEE-eccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence            5431 11 1111    1222 344555432      4689999999887644322110                      


Q ss_pred             --------ccce-EeEEEcCCCCEEEEEECC-------------------CcEEEEeCCCCCCCCcceeeeeecccc---
Q 012679          267 --------NQEV-CGLKWSASGQQLASGGND-------------------NLLHIWDRSMASSNSVTQWLHRLEEHT---  315 (458)
Q Consensus       267 --------~~~v-~~l~~spd~~~l~sg~~d-------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~---  315 (458)
                              ...+ ...++.++..++..+...                   ..|.-.|+++++.    .+..+...|.   
T Consensus       233 ~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~----~W~~q~~~~d~wd  308 (573)
T d1kb0a2         233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY----KWHYQETPGDNWD  308 (573)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE----EEEEESSTTCCSC
T ss_pred             CceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchhe----eecccccCccccc
Confidence                    0111 224455555555443211                   1344445544443    1122211111   


Q ss_pred             ----cc--eeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-----------------------------
Q 012679          316 ----SA--VKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTGS-----------------------------  360 (458)
Q Consensus       316 ----~~--v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-----------------------------  360 (458)
                          .+  +..+........+++.++  .+|.+.++|..+|+.+.......                             
T Consensus       309 ~d~~~~~~l~~~~~~g~~~~~v~~~~--k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (573)
T d1kb0a2         309 YTSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (573)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             ccccceeeecceecCCCceeeeeecc--ccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEe
Confidence                11  111222211123344443  89999999999999876543210                             


Q ss_pred             -------CeEEEEEcCCCCeEEEEecC-----------------------------------------CCCcEEEEeCCC
Q 012679          361 -------QVCALLWNKNERELLSSHGF-----------------------------------------TQNQLTLWKYPS  392 (458)
Q Consensus       361 -------~v~~~~~s~~~~~l~~~~g~-----------------------------------------~d~~i~iwd~~~  392 (458)
                             .-...+++|+...+++....                                         .-|.|.-||+.+
T Consensus       387 pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~t  466 (573)
T d1kb0a2         387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA  466 (573)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred             ecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCC
Confidence                   01224567766666542110                                         014577889999


Q ss_pred             ceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCC
Q 012679          393 MVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPK  445 (458)
Q Consensus       393 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~  445 (458)
                      ++.+.+.+... +...=..+-.|.+|++|+.||.++.+|..+++++.+...+.
T Consensus       467 Gk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         467 QKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            98888775332 11111123367788889999999999999999998765443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.035  Score=47.74  Aligned_cols=232  Identities=10%  Similarity=-0.046  Sum_probs=141.5

Q ss_pred             EEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeC--CCeEEEE-eCCCcEEEEEccCCC---eeEEEEcccccce
Q 012679          197 HIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWN--NHILTTG-GMDGLIINNDVRVRD---HIVETYRGHNQEV  270 (458)
Q Consensus       197 ~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg-~~dg~i~vwd~~~~~---~~~~~~~~h~~~v  270 (458)
                      +|+.+... .|+-.++.+......+.  ....+.+++|+  .+.|.-. ...+.|.-.++....   ............+
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~~~~--~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECCC-eEEEEECCCCcceeeeC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            45555444 58888887765444333  44567788885  4444444 456667666664321   1112233334557


Q ss_pred             EeEEEcCCCCEEEEE-ECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCC
Q 012679          271 CGLKWSASGQQLASG-GNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHT  349 (458)
Q Consensus       271 ~~l~~spd~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~  349 (458)
                      .++++.+.+..|..+ ...+.|.+.++.....      ...+.........++.+|....++.+..| ..+.|.-.++..
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dG  152 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  152 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceE------EEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCC
Confidence            788988766655554 4567899999876543      23333445567899999987888877643 456777777765


Q ss_pred             CCeeEEEeC-CCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC--CCCcEEEEEEcCCCCEEEEEeCCCc
Q 012679          350 GACLNSVDT-GSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG--HTSRVLFMAQSPDGCTVASAAADET  426 (458)
Q Consensus       350 ~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~  426 (458)
                      ......... -.....+++++.++.|+.+. ...+.|...++........+..  ......+|++. ++....+-..++.
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d-~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEec-CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            544444433 35678999999988888764 3567899999866543333322  22446678876 3444454456788


Q ss_pred             EEEEecCCCCcccc
Q 012679          427 LRFWNVFGAPQVIS  440 (458)
Q Consensus       427 i~iW~~~~~~~~~~  440 (458)
                      |.-.+..++.....
T Consensus       231 I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         231 IFSANRLTGSDVNL  244 (266)
T ss_dssp             EEEEETTTCCCCEE
T ss_pred             EEEEECCCCcceEE
Confidence            87777776654433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.31  E-value=0.032  Score=50.51  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=71.0

Q ss_pred             CEEEEEEcCCCCEEEEEecCC-----------eEEEEeCCCceee--EEecCCCcccEEEEEe--CCCeEEEEeCC-CcE
Q 012679          185 PVTSVNWAPDGRHIAIGLNNC-----------QVQLWDSTANRQL--RTLRGGHRSRVGSLAW--NNHILTTGGMD-GLI  248 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg-----------~v~iwd~~~~~~~--~~~~~~~~~~v~~l~~--~~~~l~sg~~d-g~i  248 (458)
                      .+.......+|+.++.|+.+.           .+.+||..+++-.  ..+...+........+  ++.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344444556888888877421           3779999887543  2233223332233344  67888888665 589


Q ss_pred             EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC------CcEEEEeCCCCC
Q 012679          249 INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND------NLLHIWDRSMAS  300 (458)
Q Consensus       249 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d------g~i~iwd~~~~~  300 (458)
                      .+||..+..............-.+.+..+||++++.|+.+      +.+.+||..+..
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            9999987653211111112223456677899999998753      368999987754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.16  E-value=0.081  Score=51.05  Aligned_cols=283  Identities=11%  Similarity=0.057  Sum_probs=156.9

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCC--------CCE-EEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEec
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDEN--------GPV-TSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLR  222 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~--------~~V-~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~  222 (458)
                      +.+++++.++.|+-.|..+|+.  +.++....        ..+ ..+++  .+..++.++.++.+.-.|..+++.+....
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~--lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~  144 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKR--LWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCE--EEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CEEEEeCCCCeEEEEeCCCCCe--EEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeec
Confidence            6678888899999999999987  44432110        000 11222  24568889999999999999998876543


Q ss_pred             CCCcc------cEEEEEeC---CCeEEEE-------eCCCcEEEEEccCCCeeEEEEccc--------------------
Q 012679          223 GGHRS------RVGSLAWN---NHILTTG-------GMDGLIINNDVRVRDHIVETYRGH--------------------  266 (458)
Q Consensus       223 ~~~~~------~v~~l~~~---~~~l~sg-------~~dg~i~vwd~~~~~~~~~~~~~h--------------------  266 (458)
                      .....      ....+.-+   ...++..       +..+.|.-+|.++++.+-+.....                    
T Consensus       145 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~  224 (582)
T d1flga_         145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             ccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccc
Confidence            21110      00011111   2333333       234567888888776533221100                    


Q ss_pred             -------------------ccc-eEeEEEcCCCCEEEEEEC------------------------CCcEEEEeCCCCCCC
Q 012679          267 -------------------NQE-VCGLKWSASGQQLASGGN------------------------DNLLHIWDRSMASSN  302 (458)
Q Consensus       267 -------------------~~~-v~~l~~spd~~~l~sg~~------------------------dg~i~iwd~~~~~~~  302 (458)
                                         ... -..+++.+...++..+..                        ...|.-.|..+++. 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~-  303 (582)
T d1flga_         225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV-  303 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE-
T ss_pred             cCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhh-
Confidence                               011 123566666666655431                        12355556555553 


Q ss_pred             Ccceeeeeecccccc---------eeEEEecCCCCc--EEEEeCCCCCCeEEEEECCCCCeeEEEeCCC-----------
Q 012679          303 SVTQWLHRLEEHTSA---------VKAIAWCPFQSN--LLATGGGGGDRCIKFWNTHTGACLNSVDTGS-----------  360 (458)
Q Consensus       303 ~~~~~~~~~~~h~~~---------v~~l~~~p~~~~--ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~~-----------  360 (458)
                         .+..+...|...         +..+...+ +..  .++..+  .++.+.++|..+|+.+.......           
T Consensus       304 ---~W~~q~~~~D~wd~d~~~~p~l~d~~~~~-g~~~~~v~~~~--k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~  377 (582)
T d1flga_         304 ---KWFYQHTPNDAWDFSGNNELVLFDYKAKD-GKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK  377 (582)
T ss_dssp             ---EEEEESSTTCCSCCCCCCCCEEEEEECSS-SCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT
T ss_pred             ---hhccccccccccccccccccccccccccc-ccccceeEeec--ccccEEeecccCCcccccccccCccccccccccc
Confidence               233333333221         11222222 332  333333  88999999999998765432110           


Q ss_pred             -----------------------------------CeEEEEEcCCCCeEEEEec--------------------------
Q 012679          361 -----------------------------------QVCALLWNKNERELLSSHG--------------------------  379 (458)
Q Consensus       361 -----------------------------------~v~~~~~s~~~~~l~~~~g--------------------------  379 (458)
                                                         .....+++|+...+++...                          
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~  457 (582)
T d1flga_         378 TGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRI  457 (582)
T ss_dssp             TCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             cccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccc
Confidence                                               1112345555554443211                          


Q ss_pred             -----CCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCcccccCCCCC
Q 012679          380 -----FTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFGAPQVISKSAPKP  446 (458)
Q Consensus       380 -----~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~~~~~~~~~~~~~  446 (458)
                           ...|.|.-+|+.+++.+.+...+. ++..-.++..|.++++|+.||.++-+|..+++++.+...+..
T Consensus       458 ~~~~~~~~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~  528 (582)
T d1flga_         458 KRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             EESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccccCCCCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence                 112568888888888887776432 222212234677888899999999999999999987655443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.98  E-value=0.18  Score=48.60  Aligned_cols=76  Identities=14%  Similarity=-0.041  Sum_probs=53.8

Q ss_pred             CeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeC----CCCcEEEEEEcCCC
Q 012679          340 RCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSG----HTSRVLFMAQSPDG  415 (458)
Q Consensus       340 ~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~----h~~~V~~l~~spdg  415 (458)
                      |.|.-||..+|+.+..........+-..+..+..+++  |..||.++.+|..+++.+.++.-    +..+++   |..||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~--G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t---Y~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT---YTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETT
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEE--ECCCCeEEEEECCCCcEeeEEECCCCcccCCeE---EEECC
Confidence            5788999999999887766555443334446677766  67899999999999999998853    234444   33477


Q ss_pred             C-EEEE
Q 012679          416 C-TVAS  420 (458)
Q Consensus       416 ~-~l~s  420 (458)
                      + ||+.
T Consensus       528 kQYvav  533 (596)
T d1w6sa_         528 TQYVAI  533 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            5 4543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.17  Score=45.47  Aligned_cols=135  Identities=16%  Similarity=0.050  Sum_probs=90.1

Q ss_pred             cceeeccC-CCeEEEEcCCEEEEEECC-----------CCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEe
Q 012679          144 LNLLDWGS-SNVLAIALGSTVYLWDAS-----------DGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWD  211 (458)
Q Consensus       144 ~~~~~~~~-~~~la~~~d~~v~iwd~~-----------~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd  211 (458)
                      +++++.++ ..+++++....+.|-...           .........+    ..|..++|+.+  .|++. .++.+..++
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            66788877 457777777778887632           1222222232    25899999744  56655 455788888


Q ss_pred             CCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEE-----cccccceEeEEEcCCCCEEEEEE
Q 012679          212 STANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETY-----RGHNQEVCGLKWSASGQQLASGG  286 (458)
Q Consensus       212 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----~~h~~~v~~l~~spd~~~l~sg~  286 (458)
                      ...-........ -..++..+.+++..++....+|.+.++++...... ...     ..-.+.+.++.|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~-~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTS-FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK-QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEE-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-EEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eecccccccccc-ccccccceecCCceeEEEecCCCEEEEEeccCccc-cccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            776554444433 45678999999999999999999999999876531 111     11235677888888888887774


Q ss_pred             C
Q 012679          287 N  287 (458)
Q Consensus       287 ~  287 (458)
                      .
T Consensus       190 g  190 (381)
T d1xipa_         190 N  190 (381)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.39  E-value=0.25  Score=42.43  Aligned_cols=214  Identities=14%  Similarity=0.209  Sum_probs=126.0

Q ss_pred             CCeEEEEcCCEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCc-eeeEEecCCCc----
Q 012679          152 SNVLAIALGSTVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTAN-RQLRTLRGGHR----  226 (458)
Q Consensus       152 ~~~la~~~d~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~-~~~~~~~~~~~----  226 (458)
                      .+++|.-.+.++.++|+++.+....+.+   ...|.-=.|-.+ +.|+..+.+ .|+-|+++.. ...+.+.. |.    
T Consensus        74 ~~IiALrag~~LQiFnletK~klks~~~---~e~VvfWkWis~-~~L~lVT~t-aVYHW~~~g~s~P~k~fdR-~~~L~~  147 (327)
T d1utca2          74 SKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-NTVALVTDN-AVYHWSMEGESQPVKMFDR-HSSLAG  147 (327)
T ss_dssp             SSEEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEESSS-SEEEEECSS-EEEEEESSSSCCCEEEEEC-CGGGTT
T ss_pred             CcEEEEecCCeEEEEehhHhhhhceEEc---CCCcEEEEecCC-CEEEEEcCC-ceEEEcccCCCCchhhhhh-cccccC
Confidence            5677777789999999999877444444   346777788754 456666555 7999999543 34444443 33    


Q ss_pred             ccEEEEEeC--CCeEEEEe-------CCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCC---CEEEEEE---CCCcE
Q 012679          227 SRVGSLAWN--NHILTTGG-------MDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASG---QQLASGG---NDNLL  291 (458)
Q Consensus       227 ~~v~~l~~~--~~~l~sg~-------~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~---~~l~sg~---~dg~i  291 (458)
                      ..|.....+  .+.++..+       -.|.+.+|..+.+.  -+.+.||......+...-+.   +.|+.+.   ..+.+
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc--CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence            344444443  34433321       23678899887543  46778887666555543221   2333332   23689


Q ss_pred             EEEeCCCCCCC-Cc--ceeeeeec---ccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeC-CCCeEE
Q 012679          292 HIWDRSMASSN-SV--TQWLHRLE---EHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDT-GSQVCA  364 (458)
Q Consensus       292 ~iwd~~~~~~~-~~--~~~~~~~~---~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~-~~~v~~  364 (458)
                      +|-++...... ..  .+....+-   ....--.++..++..+.+++..   .-|.|++||+.++.++..-.. ...|..
T Consensus       226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT---K~G~i~lyDleTgt~i~~nRIs~~~iF~  302 (327)
T d1utca2         226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNRISGETIFV  302 (327)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe---cCcEEEEEEcccccEEEEeecCCCceEE
Confidence            99998774321 11  11111111   1123345777777555444443   789999999999999987665 334443


Q ss_pred             EEEcCCCCeEEE
Q 012679          365 LLWNKNERELLS  376 (458)
Q Consensus       365 ~~~s~~~~~l~~  376 (458)
                      .+-+.+..-+++
T Consensus       303 ~a~~~~~~Gi~~  314 (327)
T d1utca2         303 TAPHEATAGIIG  314 (327)
T ss_dssp             EEEETTTTEEEE
T ss_pred             eccCCCCceEEE
Confidence            444444333433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.97  E-value=0.74  Score=43.97  Aligned_cols=82  Identities=7%  Similarity=0.025  Sum_probs=57.6

Q ss_pred             CCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCc-EEEEEEcCCCC-
Q 012679          339 DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSR-VLFMAQSPDGC-  416 (458)
Q Consensus       339 d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~-  416 (458)
                      .|.|.-+|+.+|+.+.....+.++..-..+..+..+++  |..||.++.+|..+++.+.+++-.... -.-+.+..+|+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~--Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEE--eCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            36788999999999998877666554344556677776  678999999999999999988632211 11145556884 


Q ss_pred             EEEEEe
Q 012679          417 TVASAA  422 (458)
Q Consensus       417 ~l~s~s  422 (458)
                      ||+..+
T Consensus       543 Yv~i~a  548 (582)
T d1flga_         543 YLGVTV  548 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.51  E-value=0.74  Score=40.66  Aligned_cols=197  Identities=11%  Similarity=0.164  Sum_probs=112.4

Q ss_pred             CCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEe------CC--CeEEEEe-CC---CcEEEEEccCCCeeEE
Q 012679          194 DGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAW------NN--HILTTGG-MD---GLIINNDVRVRDHIVE  261 (458)
Q Consensus       194 ~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~------~~--~~l~sg~-~d---g~i~vwd~~~~~~~~~  261 (458)
                      +..+++.....+-|.+||+. |+.+..+..   +++..+..      ++  ..++.++ ++   -.|.+|.+......+.
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            45566666667779999985 777777654   34444433      32  2244443 32   3577887764332233


Q ss_pred             EEccc-------ccceEeEEE--cCC-CC-EEEEEECCCcEEEEeCCCCCCC-CcceeeeeecccccceeEEEecCCCCc
Q 012679          262 TYRGH-------NQEVCGLKW--SAS-GQ-QLASGGNDNLLHIWDRSMASSN-SVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       262 ~~~~h-------~~~v~~l~~--spd-~~-~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      .+...       ...+.++++  ++. +. ++++...+|.+..|.+...... .....+..+. -...+..+++.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            33221       234677777  664 44 4566677899988876433221 1223344443 3457888999987777


Q ss_pred             EEEEeCCCCCCeEEEEECCC--CC---eeEEEe---CCCCeEEEEEcC--CCC-eEEEEecCCCCcEEEEeCCC-ceeeE
Q 012679          330 LLATGGGGGDRCIKFWNTHT--GA---CLNSVD---TGSQVCALLWNK--NER-ELLSSHGFTQNQLTLWKYPS-MVKMA  397 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~--~~---~~~~~~---~~~~v~~~~~s~--~~~-~l~~~~g~~d~~i~iwd~~~-~~~~~  397 (458)
                      |+++-   .+.-|..++..-  +.   .+....   ....+-.++.-.  ++. +|++++. .+++..|||... .+.+.
T Consensus       194 LyisE---E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ-G~n~f~vydr~~~~~~~g  269 (353)
T d1h6la_         194 LYIAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ-GNSSYAIYERQGQNKYVA  269 (353)
T ss_dssp             EEEEE---TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESSTTCCEEE
T ss_pred             EEEec---CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC-CCCeEEEEecCCCccccc
Confidence            77754   555555555432  22   222221   134567776543  333 6665543 578999999876 35565


Q ss_pred             EE
Q 012679          398 EL  399 (458)
Q Consensus       398 ~~  399 (458)
                      .+
T Consensus       270 ~F  271 (353)
T d1h6la_         270 DF  271 (353)
T ss_dssp             EE
T ss_pred             eE
Confidence            55

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.21  Score=42.56  Aligned_cols=219  Identities=10%  Similarity=0.061  Sum_probs=96.4

Q ss_pred             eEEEEeCCCceeeE--EecCCCcccEEEEEeCCCeEEEEeC---------CCcEEEEEccCCCeeEE-EEcccccceEeE
Q 012679          206 QVQLWDSTANRQLR--TLRGGHRSRVGSLAWNNHILTTGGM---------DGLIINNDVRVRDHIVE-TYRGHNQEVCGL  273 (458)
Q Consensus       206 ~v~iwd~~~~~~~~--~~~~~~~~~v~~l~~~~~~l~sg~~---------dg~i~vwd~~~~~~~~~-~~~~h~~~v~~l  273 (458)
                      .+.+||+.+++-..  .+.. .......+..++.+++.|+.         -..+.+||..+...... .+......-.++
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~   98 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG   98 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             eEEEEECCCCeEEECCCCCC-ccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence            58899998875332  2322 22223344457777777763         13567888776543111 111001111112


Q ss_pred             EEcCCCCEEEEEECCCc-----EEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCC---CCCeEEEE
Q 012679          274 KWSASGQQLASGGNDNL-----LHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGG---GDRCIKFW  345 (458)
Q Consensus       274 ~~spd~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~---~d~~i~lw  345 (458)
                      .  .+++.++.++.++.     +..+|..+.....    ........... ++...  ...+++.|+..   ....+..|
T Consensus        99 ~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~-~~~~~--~~~~~~~GG~~~~~~~~~~~~~  169 (288)
T d1zgka1          99 V--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL----VAPMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECY  169 (288)
T ss_dssp             E--ETTEEEEECCEETTEECCCEEEEETTTTEEEE----CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred             c--cceeeEEecceecccccceeeeeccccCcccc----ccccccccccc-eeeee--eecceEecCcccccccceEEEe
Confidence            2  25666666654443     3345554432210    00000000111 11222  24555555411   12457888


Q ss_pred             ECCCCCeeEEEeCCCC--eEEEEEcCCCCeEEEEecCC----CCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEE
Q 012679          346 NTHTGACLNSVDTGSQ--VCALLWNKNERELLSSHGFT----QNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVA  419 (458)
Q Consensus       346 d~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~----d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~  419 (458)
                      |..+++....-.....  ..+.... .+ .+....|..    .....++|..+.+....-.....+..+-+...++++++
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v  247 (288)
T d1zgka1         170 YPERNEWRMITAMNTIRSGAGVCVL-HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV  247 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             eccccccccccccccccccccccce-ee-eEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEE
Confidence            8877654432221111  1122222 22 333332322    13567777766554332111122221112223678888


Q ss_pred             EEeCCCc-----EEEEecCCCC
Q 012679          420 SAAADET-----LRFWNVFGAP  436 (458)
Q Consensus       420 s~s~Dg~-----i~iW~~~~~~  436 (458)
                      .|+.++.     |.+||+....
T Consensus       248 ~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         248 LGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             ECCBCSSCBCCEEEEEETTTTE
T ss_pred             EecCCCCeecceEEEEECCCCE
Confidence            8876543     6788887543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.19  E-value=0.94  Score=39.97  Aligned_cols=186  Identities=11%  Similarity=0.147  Sum_probs=109.3

Q ss_pred             CeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEc------CCCCEEEEEEC--C--CcEEEEeCCCCCCCCcce
Q 012679          237 HILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWS------ASGQQLASGGN--D--NLLHIWDRSMASSNSVTQ  306 (458)
Q Consensus       237 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s------pd~~~l~sg~~--d--g~i~iwd~~~~~~~~~~~  306 (458)
                      .+++.....+-|++||+. ++. +..+.  .+.++.+..-      .....|+.+++  +  ..|.+|.+......    
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~-l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~----  112 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKM-LHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----  112 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCE-EEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE----
T ss_pred             cEEEEEcCcCCEEEEcCC-CcE-EEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc----
Confidence            566677777779999996 443 33332  3445554432      22334555553  2  36778877533220    


Q ss_pred             eeeeecc-------cccceeEEEe--cCCCCcE-EEEeCCCCCCeEEEEECC---CC----CeeEEEeCCCCeEEEEEcC
Q 012679          307 WLHRLEE-------HTSAVKAIAW--CPFQSNL-LATGGGGGDRCIKFWNTH---TG----ACLNSVDTGSQVCALLWNK  369 (458)
Q Consensus       307 ~~~~~~~-------h~~~v~~l~~--~p~~~~l-l~s~~g~~d~~i~lwd~~---~~----~~~~~~~~~~~v~~~~~s~  369 (458)
                       +..+..       -...+..+|+  ++....+ +++..  .+|.+..|.+.   .+    +.++.+....++..+.+..
T Consensus       113 -l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd  189 (353)
T d1h6la_         113 -LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD  189 (353)
T ss_dssp             -EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred             -cccccccccccccccCcceEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence             222211       1124667777  6654433 34443  78888888653   33    3567788899999999999


Q ss_pred             CCCeEEEEecCCCCcEEEEeCC-----CceeeEEEeC--CCCcEEEEEEcC--C--CCEEEEEeCCCcEEEEecCCC
Q 012679          370 NERELLSSHGFTQNQLTLWKYP-----SMVKMAELSG--HTSRVLFMAQSP--D--GCTVASAAADETLRFWNVFGA  435 (458)
Q Consensus       370 ~~~~l~~~~g~~d~~i~iwd~~-----~~~~~~~~~~--h~~~V~~l~~sp--d--g~~l~s~s~Dg~i~iW~~~~~  435 (458)
                      ....|+++  -++..|..+++.     ....+....+  ....+-.|+.-.  +  |-+|+|.-.|++..+||-...
T Consensus       190 e~~~Lyis--EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         190 EYGSLYIA--EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTTEEEEE--ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCCcEEEe--cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999994  355555555543     1233333322  345677777542  3  344555557889999998654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.09  E-value=0.99  Score=39.70  Aligned_cols=165  Identities=11%  Similarity=0.000  Sum_probs=93.0

Q ss_pred             CCeEEEEeCCCceeeE-Ee--cCCC----cccEEEEEe----CCC-eEEEEe---CCCcEEEEEccCCCeeEE---EEc-
Q 012679          204 NCQVQLWDSTANRQLR-TL--RGGH----RSRVGSLAW----NNH-ILTTGG---MDGLIINNDVRVRDHIVE---TYR-  264 (458)
Q Consensus       204 dg~v~iwd~~~~~~~~-~~--~~~~----~~~v~~l~~----~~~-~l~sg~---~dg~i~vwd~~~~~~~~~---~~~-  264 (458)
                      .|.|.++|+.+.+... .+  .+..    .-....+..    ++. +|++..   ...+|-++++......+.   .+. 
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4788899987653221 11  1111    112344443    343 344442   356788888765442222   221 


Q ss_pred             ccccceEeEEEcCCCCEEEEEEC---------------CCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCc
Q 012679          265 GHNQEVCGLKWSASGQQLASGGN---------------DNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSN  329 (458)
Q Consensus       265 ~h~~~v~~l~~spd~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  329 (458)
                      ......+.+.+..++.+++|-..               -+...+|.......       ......-.....|+++|+++.
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-------~~~~~~l~~pNGI~~s~d~~~  219 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-------RVVAEGFDFANGINISPDGKY  219 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-------EEEEEEESSEEEEEECTTSSE
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-------EEEcCCCCccceeEECCCCCE
Confidence            12345778888888888887311               12233444333322       222223345788999999888


Q ss_pred             EEEEeCCCCCCeEEEEECCCCC---eeEEEeCCCCeEEEEEcCC-CCeEEEE
Q 012679          330 LLATGGGGGDRCIKFWNTHTGA---CLNSVDTGSQVCALLWNKN-ERELLSS  377 (458)
Q Consensus       330 ll~s~~g~~d~~i~lwd~~~~~---~~~~~~~~~~v~~~~~s~~-~~~l~~~  377 (458)
                      ++++..  ..+.|+.|++....   ....+......-.+.+.+. +...+++
T Consensus       220 lyVa~t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         220 VYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EEEEeC--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            888876  78899999887543   2333455667788888764 4555443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.72  Score=38.97  Aligned_cols=220  Identities=14%  Similarity=0.160  Sum_probs=102.0

Q ss_pred             CEEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEEEEEec---------CCeEEEEeCCCceeeE--EecCCCcccE
Q 012679          161 STVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHIAIGLN---------NCQVQLWDSTANRQLR--TLRGGHRSRV  229 (458)
Q Consensus       161 ~~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~la~g~~---------dg~v~iwd~~~~~~~~--~~~~~~~~~v  229 (458)
                      ..+.+||.+++++..+..+......-..+..  ++..++.|+.         -..+.+||..+.+...  .+.. .....
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~-~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV-PRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS-CCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccc-eecce
Confidence            4688999999988776555433322223332  5666666653         1357788887665432  2221 12223


Q ss_pred             EEEEeCCCeEEEEeCCCcE-----EEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECC-----CcEEEEeCCCC
Q 012679          230 GSLAWNNHILTTGGMDGLI-----INNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGND-----NLLHIWDRSMA  299 (458)
Q Consensus       230 ~~l~~~~~~l~sg~~dg~i-----~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~d-----g~i~iwd~~~~  299 (458)
                      .+...++.+++.|+.++..     ..+|..+..............-.++... ++..++.|+.+     ..+..||....
T Consensus        96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1          96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             eccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc
Confidence            4455577777777655543     3456554432111111110011112222 34455555543     35677776654


Q ss_pred             CCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCC---CeEEEEECCCCCeeEEEeCCCC--eEEEEEcCCCCeE
Q 012679          300 SSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGD---RCIKFWNTHTGACLNSVDTGSQ--VCALLWNKNEREL  374 (458)
Q Consensus       300 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d---~~i~lwd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l  374 (458)
                      .....     ..........+++..  ...+++.++...+   .....+|..+.+....-.....  -.+++.. +++.+
T Consensus       175 ~~~~~-----~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~  246 (288)
T d1zgka1         175 EWRMI-----TAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIY  246 (288)
T ss_dssp             EEEEC-----CCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEE
T ss_pred             ccccc-----cccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE-CCEEE
Confidence            32100     000011111122222  3456666542211   3567788777654432222111  1222222 45444


Q ss_pred             EEEecCCC----CcEEEEeCCCc
Q 012679          375 LSSHGFTQ----NQLTLWKYPSM  393 (458)
Q Consensus       375 ~~~~g~~d----~~i~iwd~~~~  393 (458)
                      +. .|...    ..+.+||+.+.
T Consensus       247 v~-GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         247 VL-GGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             EE-CCBCSSCBCCEEEEEETTTT
T ss_pred             EE-ecCCCCeecceEEEEECCCC
Confidence            44 34322    34778888764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.19  E-value=1.9  Score=39.01  Aligned_cols=260  Identities=12%  Similarity=0.083  Sum_probs=128.6

Q ss_pred             CCceeeeCCCCCCccc--cceeeccC-CCeEEEEc--CC----EEEEEECCCCCeeeEEEecCCCCCEEEEEEcCCCCEE
Q 012679          128 SSERTLDAPDLVDDYY--LNLLDWGS-SNVLAIAL--GS----TVYLWDASDGTTSELVTVDDENGPVTSVNWAPDGRHI  198 (458)
Q Consensus       128 ~~~~~l~~~~~~~d~~--~~~~~~~~-~~~la~~~--d~----~v~iwd~~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l  198 (458)
                      ..+-+||.-.+..+.+  +..+.+++ ++.++.+.  +|    .|+++|+.+++.... .+..  .....++|++|++.|
T Consensus       109 ~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i~~--~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         109 EARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLER--VKFSCMAWTHDGKGM  185 (430)
T ss_dssp             CCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEE--ECSCCEEECTTSSEE
T ss_pred             CeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cccc--ccccceEEcCCCCEE
Confidence            4456677554444433  33445566 45555554  33    799999999986432 2221  112568999999988


Q ss_pred             EEEecC----------------CeEEEEeCCCceee--EEecCC-CcccEEEEEe--CCCeEEEEe---CCCc--EEEEE
Q 012679          199 AIGLNN----------------CQVQLWDSTANRQL--RTLRGG-HRSRVGSLAW--NNHILTTGG---MDGL--IINND  252 (458)
Q Consensus       199 a~g~~d----------------g~v~iwd~~~~~~~--~~~~~~-~~~~v~~l~~--~~~~l~sg~---~dg~--i~vwd  252 (458)
                      +....+                ..|..+.+.+...-  ..+... ....+..+..  ++.+++...   .++.  +.+.|
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d  265 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence            765432                25777777665322  222221 2223444444  566655432   2233  44445


Q ss_pred             ccCCCe-------eEEEEcccccceEeEEEcCCCCEEEEEE---CCCcEEEEeCCCCCCCCcceeeeeecccccceeEEE
Q 012679          253 VRVRDH-------IVETYRGHNQEVCGLKWSASGQQLASGG---NDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIA  322 (458)
Q Consensus       253 ~~~~~~-------~~~~~~~h~~~v~~l~~spd~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  322 (458)
                      +.....       ...........+.-+.. .++.+++...   .++.|...++.....   ..+...+..+...+..-.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~---~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         266 LQQESNGITGILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEE---SKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCG---GGCEEEECCCSSCEEEEE
T ss_pred             CCCcccccccccceeEeecccccceEEEec-CCceeecccCcccccceeEEecCCCCcc---ccceEEecccCcceeeeE
Confidence            443211       11122222222322222 2222333322   235666667665432   111222333444444333


Q ss_pred             ecCCCCcEEEEeCCCCCCeEEEEECCCCCeeEEEeCC-CCeEEEEEcCCCCeEEEEe-c-CCCCcEEEEeCCCce
Q 012679          323 WCPFQSNLLATGGGGGDRCIKFWNTHTGACLNSVDTG-SQVCALLWNKNERELLSSH-G-FTQNQLTLWKYPSMV  394 (458)
Q Consensus       323 ~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-g-~~d~~i~iwd~~~~~  394 (458)
                      +...+..+++..--..-..|++++..++......... +.+..+...++...+.... + ..-.++.-+|+.+++
T Consensus       342 ~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            3333456665543112245889999888765554332 3355555555555554422 2 123577888887764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=1.5  Score=39.04  Aligned_cols=180  Identities=9%  Similarity=-0.043  Sum_probs=98.3

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEeCCC-----------ceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEc
Q 012679          185 PVTSVNWAPDGRHIAIGLNNCQVQLWDSTA-----------NRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDV  253 (458)
Q Consensus       185 ~V~~v~~s~~g~~la~g~~dg~v~iwd~~~-----------~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~  253 (458)
                      ...-++.++...++++|+.++ +.|..+..           .......   .-..|..++|+++.|+... ++.+..++.
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d~l~v~~-~~~l~~~~~  112 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGDQVLVST-RNALYSLDL  112 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETTEEEEEE-SSEEEEEES
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCCEEEEEe-CCCEEEEEe
Confidence            356677888777888888774 66665311           1111111   1236889999888777654 456777887


Q ss_pred             cCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEE
Q 012679          254 RVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLAT  333 (458)
Q Consensus       254 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s  333 (458)
                      ..-.. ......-..++..+.++|.  .++....+|.+.++++..........-...+. -...+.+++|++.+..+++ 
T Consensus       113 ~~l~~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~-  187 (381)
T d1xipa_         113 EELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFA-  187 (381)
T ss_dssp             SSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEE-
T ss_pred             ecccc-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEE-
Confidence            66443 2233333556888888774  56677788999999988775411100011111 1245667777764444433 


Q ss_pred             eCCCCCCeEEEE-ECCCCCeeEE-EeCCCCeEEEEEcCCCCeEEEE
Q 012679          334 GGGGGDRCIKFW-NTHTGACLNS-VDTGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       334 ~~g~~d~~i~lw-d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~  377 (458)
                      +.   .+...+- ++.....+.. ...+..+.++.|-.+..++++-
T Consensus       188 ~~---g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WR---NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EE---TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eC---CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            32   1111111 1110000000 0123457899998877777654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.63  E-value=1.3  Score=38.81  Aligned_cols=172  Identities=9%  Similarity=0.019  Sum_probs=94.3

Q ss_pred             CCcEEEEEccCCCeeEEEEccc-------ccceEeEEE--cCCCC-EEEEEE---CCCcEEEEeCCCCCCCCcceeeeee
Q 012679          245 DGLIINNDVRVRDHIVETYRGH-------NQEVCGLKW--SASGQ-QLASGG---NDNLLHIWDRSMASSNSVTQWLHRL  311 (458)
Q Consensus       245 dg~i~vwd~~~~~~~~~~~~~h-------~~~v~~l~~--spd~~-~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~  311 (458)
                      .|.|.++|+.........+.-.       .-...++..  .++|. +|++..   ...+|.+|++.....  ...++..+
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~--~l~~~~~v  144 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTI  144 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEE
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC--eEEEEeec
Confidence            4888999987654333222211       112344443  44565 344443   356788888765432  12333333


Q ss_pred             ccc-ccceeEEEecCCCCcEEEEeC-CCC------------CCeEEEEECCCCCeeEEEeCCCCeEEEEEcCCCCeEEEE
Q 012679          312 EEH-TSAVKAIAWCPFQSNLLATGG-GGG------------DRCIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSS  377 (458)
Q Consensus       312 ~~h-~~~v~~l~~~p~~~~ll~s~~-g~~------------d~~i~lwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  377 (458)
                      ... ......+++..++ .+++|-. ...            -+...+|....++.......-...+.++++|++++++++
T Consensus       145 ~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa  223 (340)
T d1v04a_         145 RHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA  223 (340)
T ss_dssp             CCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEE
Confidence            322 2346778877754 4555521 001            123344444444444444445678999999999999887


Q ss_pred             ecCCCCcEEEEeCCCcee---eEEEeCCCCcEEEEEEcC-CCCEEEEE
Q 012679          378 HGFTQNQLTLWKYPSMVK---MAELSGHTSRVLFMAQSP-DGCTVASA  421 (458)
Q Consensus       378 ~g~~d~~i~iwd~~~~~~---~~~~~~h~~~V~~l~~sp-dg~~l~s~  421 (458)
                      . ...+.|.+|++.....   ...+. -.+.+-.+.+.+ +|.+.+.+
T Consensus       224 ~-t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         224 E-LLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             E-GGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             e-CCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            4 3577899998864332   22222 334566788876 45555443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.85  E-value=2.3  Score=35.69  Aligned_cols=222  Identities=15%  Similarity=0.060  Sum_probs=108.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEeCCCceeeEEecCCCcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEE
Q 012679          183 NGPVTSVNWAPDGRHIAIGLNNCQVQLWDSTANRQLRTLRGGHRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVET  262 (458)
Q Consensus       183 ~~~V~~v~~s~~g~~la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  262 (458)
                      ...|..|+--  ..+.++- .||.|..|-.....++-.-.. ....|..++-.....+.- .||.+..|...........
T Consensus        25 ~~~i~~va~G--~~h~~al-~dG~v~~wG~N~~GQlG~~~~-~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          25 QSGVDAIAGG--YFHGLAL-KGGKVLGWGANLNGQLTMPAA-TQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSSEEEEEEC--SSEEEEE-ETTEEEEEECCTTSTTSCCGG-GGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEEcc--CCEEEEE-ECCEEEEEeCCCCCceeeeec-ccccceEEecCCCceeee-eeeeeeccCCCcceeeccc
Confidence            3458888763  2233333 489999997655443332222 344566666643333333 4899999976443221111


Q ss_pred             EcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeE
Q 012679          263 YRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCI  342 (458)
Q Consensus       263 ~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i  342 (458)
                       ......+..++...  ...+. -.|+.+..|........      .........|..++-..  ...++.    .++.+
T Consensus       100 -~~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~------~~~~~~~~~v~~~~~~~--~~~~~~----~~g~~  163 (273)
T d1jtdb_         100 -AEARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQT------TVPAEAQSGVTALDGGV--YTALAV----KNGGV  163 (273)
T ss_dssp             -GGGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTSTT------SCCGGGGSSEEEEEECS--SEEEEE----ETTEE
T ss_pred             -cccccceeEEeeec--ccccc-cccccceecccCCCCce------eeeccCCceEEEEeccc--eeeeee----cccce
Confidence             11122333444322  22222 24789999975443321      11111223344444322  233333    47788


Q ss_pred             EEEECCCCCe-eEEEeCCCCeEEEEEcCCCCeEEEEecCCCCcEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEE
Q 012679          343 KFWNTHTGAC-LNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASA  421 (458)
Q Consensus       343 ~lwd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d~~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~  421 (458)
                      +.|-...... .........|..++.....  .++.   .||.|+-|=.....++..-......|..|+-.... .++. 
T Consensus       164 ~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h--~~~l---~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l-  236 (273)
T d1jtdb_         164 IAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-  236 (273)
T ss_dssp             EEEECCTTSTTSCCGGGSSSEEEEEECSSE--EEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-
T ss_pred             eEeecccCCcccccccccCCccceecccee--eEEE---ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE-
Confidence            8886644221 1122234456666543322  2221   36788888654322221111122457777765433 4443 


Q ss_pred             eCCCcEEEEecC
Q 012679          422 AADETLRFWNVF  433 (458)
Q Consensus       422 s~Dg~i~iW~~~  433 (458)
                       .||.|..|=-.
T Consensus       237 -~~g~v~~WG~~  247 (273)
T d1jtdb_         237 -KNGKVIAWGSS  247 (273)
T ss_dssp             -ETTEEEEESTT
T ss_pred             -ECCEEEEECCC
Confidence             38999999543

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.30  E-value=1.6  Score=36.80  Aligned_cols=185  Identities=15%  Similarity=0.076  Sum_probs=91.2

Q ss_pred             CcccEEEEEeCCCeEEEEeCCCcEEEEEccCCCeeEEEEcccccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCc
Q 012679          225 HRSRVGSLAWNNHILTTGGMDGLIINNDVRVRDHIVETYRGHNQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSV  304 (458)
Q Consensus       225 ~~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~  304 (458)
                      ....|..++-.....+.-. ||.|+.|-......+ ..-......|..+..-  ..+.+. -.|+.+..|......... 
T Consensus        24 ~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQl-G~~~~~~~~v~~v~~G--~~~~~a-l~dg~v~~wG~~~~gq~~-   97 (273)
T d1jtdb_          24 AQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQL-TMPAATQSGVDAIAAG--NYHSLA-LKDGEVIAWGGNEDGQTT-   97 (273)
T ss_dssp             GSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT-SCCGGGGSCCCEEEEC--SSEEEE-EETTEEEEEECCTTSTTC-
T ss_pred             CCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCce-eeeecccccceEEecC--CCceee-eeeeeeeccCCCcceeec-
Confidence            4456888888655555455 899999976554332 1111223345445432  222222 248999999865432211 


Q ss_pred             ceeeeeecccccceeEEEecCCCCcEEEEeCCCCCCeEEEEECCCCCeeE-EEeCCCCeEEEEEcCCCCeEEEEecCCCC
Q 012679          305 TQWLHRLEEHTSAVKAIAWCPFQSNLLATGGGGGDRCIKFWNTHTGACLN-SVDTGSQVCALLWNKNERELLSSHGFTQN  383 (458)
Q Consensus       305 ~~~~~~~~~h~~~v~~l~~~p~~~~ll~s~~g~~d~~i~lwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~g~~d~  383 (458)
                           ........+..++-..  ...++.    .|+.+..|......... .......+..+.-.  ...++..   .++
T Consensus        98 -----~~~~~~~~~~~i~~~~--~~~~~~----~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~---~~g  161 (273)
T d1jtdb_          98 -----VPAEARSGVDAIAAGA--WASYAL----KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTALAV---KNG  161 (273)
T ss_dssp             -----CCGGGGSSCCEEEEET--TEEEEE----ETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEEEE---ETT
T ss_pred             -----cccccccceeEEeeec--cccccc----ccccceecccCCCCceeeeccCCceEEEEecc--ceeeeee---ccc
Confidence                 0111123344444333  222222    57889999754322111 11122334433321  1222221   467


Q ss_pred             cEEEEeCCCceeeEEEeCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 012679          384 QLTLWKYPSMVKMAELSGHTSRVLFMAQSPDGCTVASAAADETLRFWNVFG  434 (458)
Q Consensus       384 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iW~~~~  434 (458)
                      .+..|-................|..|+..... .++ -. ||.|+-|=-..
T Consensus       162 ~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~-l~-dG~v~~WG~n~  209 (273)
T d1jtdb_         162 GVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLA-LK-DGKVIAWGDNR  209 (273)
T ss_dssp             EEEEEECCTTSTTSCCGGGSSSEEEEEECSSE-EEE-EE-TTEEEEEECCT
T ss_pred             ceeEeecccCCcccccccccCCccceecccee-eEE-Ee-cCcEEEcCCCC
Confidence            78888665433322222344568888775443 233 23 89999996543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.91  E-value=9.3  Score=34.50  Aligned_cols=56  Identities=11%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             ccceEeEEEcCCCCEEEEEECCCcEEEEeCCCCCCCCcceeeeee------cccccceeEEEecCC
Q 012679          267 NQEVCGLKWSASGQQLASGGNDNLLHIWDRSMASSNSVTQWLHRL------EEHTSAVKAIAWCPF  326 (458)
Q Consensus       267 ~~~v~~l~~spd~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~p~  326 (458)
                      -....+|+|.||+++|++--..|.|++++...+....    +..+      ..-......|+++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~----i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT----VFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE----EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee----cccCCccccccCCCCceeeEEeCCC
Confidence            4567799999999988876557999999877654321    1211      122345678999985