Citrus Sinensis ID: 012694

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccEEcccccccccccHHHHHccccccEEEccccccccccHHHHcccccccccccccccccccHHHHccccccEEEccccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHccHHHHHHHHHccccccHHHHHHccccHHcccccccccccccccccccccccHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHcccccccccccccccHHHcHHHHHHccccccccccccHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccHHHHcccccEEEEcccccccccHHHHHHccccEEEccccccccccHHHHHHccccEEEccccccccccHHHHHcccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccHHHHcccEEEccccccccccHHHHccccccEEEccccccccccccHHHHcHccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHccccccEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
mnpnpenyPLLVFVLSqlnpndhpplppqvynnlitkyphltnstvissltqgvpvqitqtrlllgtrpdpdtVSAARSKLAQFQetatsspevdLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNvsgnklntlpeSIARCSSLVELDASFnnlvclptnigygllnLERLSIKLnklrtfppsicemrSLKYLDAHFNElhglpraigKLTRLEVLNLssnfndltelpeTIGDLINlreldlsnnqiralPDTFFRLENltklnldqnplvippmeiVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGvsqsvggylgggktsadpyldqql
Flexible Loop (DISEMBL)
MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTrlllgtrpdPDTVSAARSKLAqfqetatsspevdLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQeaesgvvvetvDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTklnldqnplvipPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGylgggktsadpyldqql
Low Complexity Region (SEG)
MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL
Disordered region (IsUnstruct)
*******YPLLVFVLSQLN******LPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLLG****************************DLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSIL********QSGWLAWGSSMLTNFVSGVSQSVGGYLG**************
Disordered Region (DISOPRED)
***NPENYPLLVFVLSQL******************KY*HLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQ*SILEANKQQQAQSGWLAWGSSMLTN****************************
Disordered Region (DISEMBL)
MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDP********************PEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL
Disordered Region (DISPRO)
****PENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSV*GYLGGGKTSAD*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
O61967	699	Protein lap1 OS=Caenorhab	yes	no	0.491	0.321	0.416	2e-32
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.521	0.395	0.389	1e-30
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.521	0.395	0.385	1e-29
Q9Y4C4	1052	Malignant fibrous histioc	yes	no	0.532	0.231	0.337	2e-28
P70587	1490	Leucine-rich repeat-conta	yes	no	0.410	0.126	0.429	6e-28
Q9BTT6	524	Leucine-rich repeat-conta	no	no	0.489	0.427	0.385	6e-28
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.410	0.126	0.429	7e-28
Q96NW7	1537	Leucine-rich repeat-conta	no	no	0.410	0.122	0.424	8e-28
Q80VQ1	524	Leucine-rich repeat-conta	no	no	0.528	0.461	0.382	3e-27
Q8BGI7	337	Leucine-rich repeat-conta	no	no	0.606	0.824	0.324	4e-27

>sp|O61967|LAP1_CAEEL Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 129/228 (56%), Gaps = 3/228 (1%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           +  + L +  L LLP   G L  L  L    NLL  +P SI  L+KLEELD+  N L++L
Sbjct: 130 ITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEAL 189

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
           P  IG L +L+   V  N L +LP+SI+ C  L +LD S N ++ LP N+G  + NL  L
Sbjct: 190 PAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGR-MPNLTDL 248

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
           +I +N++   P S  E++ L+ L A  N LH L   IGK   L  L L  NF  LT+LP+
Sbjct: 249 NISINEIIELPSSFGELKRLQMLKADRNSLHNLTSEIGKCQSLTELYLGQNF--LTDLPD 306

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379
           TIGDL  L  L++  N +  +PDT    ++LT L+L QN L   PM I
Sbjct: 307 TIGDLRQLTTLNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTI 354

Critical role in assembling adherens junctions; adapter protein involved in polarizing protein trafficking in epithelial cells. Necessary to maintain, not establish, the entire terminal web (organelle-depleted, intermediate filament-rich layer of cytoplasm that underlies the apical microvilli of polarized epithelial cells) or brush border assembly at the apical surface gut cells. Required for correct localization of ifb-2 intermediate filaments in the terminal web.
Caenorhabditis elegans (taxid: 6239)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 139/244 (56%), Gaps = 5/244 (2%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           ++ ++++  ++K LP     L+ L S  L  N LE +PDSI  L  LEELDVS+N L+S+
Sbjct: 130 LQKLNISHNKIKQLPNELQHLQNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSV 189

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             S+G L  L   N+S NKL  LP  I +  +L +LD + N L  +P ++  G+ +LE+L
Sbjct: 190 SSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLRQLDCTSNLLENVPASVA-GMESLEQL 248

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELP 330
            ++ NKL T+ P +  +  LK L    N++  L P  +  L+ L VL L   +N L  LP
Sbjct: 249 YLRQNKL-TYLPELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLEL--RYNKLKVLP 305

Query: 331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
           + I  L  L  LDLSNN I +LPDT   L NL  L LD NPL     +I+NKG + + ++
Sbjct: 306 KEISLLKGLERLDLSNNDIGSLPDTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKY 365

Query: 391 MAKR 394
           +  R
Sbjct: 366 LKGR 369

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/244 (38%), Positives = 140/244 (57%), Gaps = 5/244 (2%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           ++ ++++  ++K LP+    L+ L SL L  N LE +PDSI  L  LEELDVS+N L+S+
Sbjct: 130 LQKLNISHNKIKQLPKELQHLQNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSI 189

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             S+G L  L   N+S NKL  LP  I +  +L +LD + N L  +P ++  G+ +LE+L
Sbjct: 190 SSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLKQLDCTSNLLENVPASVA-GMESLEQL 248

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELP 330
            ++ NKL T+ P +  +  LK L    N++  L P  +  L+ L VL L   +N L  LP
Sbjct: 249 YLRQNKL-TYLPELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLEL--RYNKLKVLP 305

Query: 331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
           E I  L  L  LDLSNN + +LP T   L NL  L L+ NPL     +I+NKG + + ++
Sbjct: 306 EEISLLNGLERLDLSNNDLGSLPCTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKY 365

Query: 391 MAKR 394
           +  R
Sbjct: 366 LKGR 369

Xenopus tropicalis (taxid: 8364)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 132/290 (45%), Gaps = 46/290 (15%)

Query: 146 AESGVVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVS 204
           AE G  +  +D++  +L  L  E    LR L  LNLS N L A+P  +  L  LEELDVS
Sbjct: 107 AELGHHLTELDVSHNRLTALGAEVVSALRELRKLNLSHNQLPALPAQLGALAHLEELDVS 166

Query: 205 SNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG 264
            N L  LPDS+  L  L+ L+V  N+L   P  + +  +L ELD S N L  LP +I   
Sbjct: 167 FNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLLQLVALEELDVSSNRLRGLPEDIS-A 225

Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF- 323
           L  L+ L +   +L T P   CE+ SL+ L    N L  LP     L RL++LNLSSN  
Sbjct: 226 LRALKILWLSGAELGTLPAGFCELASLESLMLDNNGLQALPAQFSCLQRLKMLNLSSNLF 285

Query: 324 -------------------------------------------NDLTELPETIGDLINLR 340
                                                      N +  LP++I +L  L 
Sbjct: 286 EEFPAALLPLAGLEELYLSRNQLTSVPSLISGLGRLLTLWLDNNRIRYLPDSIVELTGLE 345

Query: 341 ELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
           EL L  NQI  LPD F +L  +    +  NPL+ PP E+  KG+  +  +
Sbjct: 346 ELVLQGNQIAVLPDHFGQLSRVGLWKIKDNPLIQPPYEVCMKGIPYIAAY 395

Homo sapiens (taxid: 9606)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 162 LKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNL 221
           L++LP + G+L+ LV L++S+N +E +   I+G + LE+L +SSN+LQ LPDSIGLL  L
Sbjct: 219 LQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQLPDSIGLLKKL 278

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
             L V  N+L  LP +I   S L E D S N L  LP  IGY L +L  L++  N L   
Sbjct: 279 TTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGY-LHSLRTLAVDENFLPEL 337

Query: 282 PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341
           P  I   +++  +    N+L  LP  IG++ RL VLNLS   N L  LP +   L  L  
Sbjct: 338 PREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSD--NRLKNLPFSFTKLKELAA 395

Query: 342 LDLSNNQIRAL 352
           L LS+NQ +AL
Sbjct: 396 LWLSDNQSKAL 406

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 135/254 (53%), Gaps = 30/254 (11%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLL 218
           D  L+ LPE  G L  L SL L  NLL  +PDS+  L++LEELD+ +N + +LP+SIG L
Sbjct: 137 DISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGAL 196

Query: 219 LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
           L+LK L + GN+L+ LP+ I    +L+ LD S N L  LP  I  GL +L  L I  N L
Sbjct: 197 LHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEIS-GLTSLTDLVISQNLL 255

Query: 279 RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
            T                       +P  IGKL +L +L +  N   LT+LPE +G+  +
Sbjct: 256 ET-----------------------IPDGIGKLKKLSILKVDQN--RLTQLPEAVGECES 290

Query: 339 LRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAK--RWD 396
           L EL L+ NQ+  LP +  +L+ L+ LN D+N LV  P EI   G  ++  F  +  R  
Sbjct: 291 LTELVLTENQLLTLPKSIGKLKKLSNLNADRNKLVSLPKEI--GGCCSLTVFCVRDNRLT 348

Query: 397 GIIAEAQQKSILEA 410
            I AE  Q + L  
Sbjct: 349 RIPAEVSQATELHV 362

Homo sapiens (taxid: 9606)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score =  125 bits (314), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 112/191 (58%), Gaps = 3/191 (1%)

Query: 162 LKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNL 221
           L++LP + G+L+ LV L++S+N +E +   I+G + LE+L +SSN+LQ LPDSIGLL  L
Sbjct: 219 LQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQLPDSIGLLKKL 278

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
             L V  N+L  LP +I   S L E D S N L  LP  IGY L +L  L++  N L   
Sbjct: 279 TTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGY-LHSLRTLAVDENFLPEL 337

Query: 282 PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341
           P  I   +++  +    N+L  LP  IG++ RL VLNLS   N L  LP +   L  L  
Sbjct: 338 PREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSD--NRLKNLPFSFTKLKELAA 395

Query: 342 LDLSNNQIRAL 352
           L LS+NQ +AL
Sbjct: 396 LWLSDNQSKAL 406

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 113/191 (59%), Gaps = 3/191 (1%)

Query: 162 LKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNL 221
           L++LP + G+L+ LV L++S+N +E +   I+G + LE+L +SSN+LQ LPDSIGLL  L
Sbjct: 219 LQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQLPDSIGLLKKL 278

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
             L V  N+L  LP +I   S L E D S N L  LP+ IGY L +L  L++  N L   
Sbjct: 279 TTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPSTIGY-LHSLRTLAVDENFLPEL 337

Query: 282 PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341
           P  I   +++  +    N+L  LP  IG++ +L VLNLS   N L  LP +   L  L  
Sbjct: 338 PREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSD--NRLKNLPFSFTKLKELAA 395

Query: 342 LDLSNNQIRAL 352
           L LS+NQ +AL
Sbjct: 396 LWLSDNQSKAL 406

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

>sp|Q80VQ1|LRRC1_MOUSE Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 9/251 (3%)

Query: 126 DSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLL 185
           D     LV V E++ +  +       +E + L   QL+ LPE F +L  L  L LS N +
Sbjct: 18  DKRHCSLVYVPEEIYRYARS------LEELLLDANQLRELPEQFFQLVKLRKLGLSDNEI 71

Query: 186 EAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLV 245
           + +P  IA   +L ELDVS N +  +P+SI     L+V + SGN L  LPES     +L 
Sbjct: 72  QRLPPEIANFMQLVELDVSRNDIPEIPESIAFCKALQVADFSGNPLTRLPESFPELQNLT 131

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP 305
            L  +  +L  LP NIG  L NL  L ++ N L   P S+ ++R L+ LD   NE++ LP
Sbjct: 132 CLSVNDISLQSLPENIG-NLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLP 190

Query: 306 RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
            +IG L  L+ L L    N L+ELP+ IG+L NL  LD+S N++  LP+    L +LT L
Sbjct: 191 ESIGALLHLKDLWLDG--NQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTYL 248

Query: 366 NLDQNPLVIPP 376
            + QN L   P
Sbjct: 249 VISQNLLETIP 259

Mus musculus (taxid: 10090)

>sp|Q8BGI7|LRC39_MOUSE Leucine-rich repeat-containing protein 39 OS=Mus musculus GN=Lrrc39 PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 21/299 (7%)

Query: 86  ETATSSPEVDLYRAVV--KLEEMHEDCERQFKEAEEMLDRVY-DSVSAELVDVNEDVVKI 142
           E+A  +  V   + V   ++++ HED +R+ KE +  L R++ D VS  L  + E V + 
Sbjct: 3   ESAVCTGAVSAVKEVWEERIKKHHEDVKRE-KEFQHKLVRIWEDRVS--LTKLKEKVTR- 58

Query: 143 LQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELD 202
               E G V+  + +   + K LP +  +L  L    L R  L  +P+ I   Q L  LD
Sbjct: 59  ----EDGRVI--LRIEKEEWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQHLIVLD 112

Query: 203 VSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVC-LPTNI 261
           +S N +  +P  IGLL  L+ L +S NK+ T+P+ ++ C+SL +L+ + N  +  LP  +
Sbjct: 113 LSRNTISEIPRGIGLLTRLQELILSYNKIKTVPKELSNCTSLEKLELAVNRDISDLPPEL 172

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
              LL L  L + +N+  T P ++ +M +L++LD   N L  LP ++ ++  L  L L  
Sbjct: 173 S-KLLKLTHLDLSMNQFTTIPHAVLDMPALEWLDMGSNSLQQLPDSLDRMRSLHTLWLQR 231

Query: 322 NFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL----VIPP 376
             N++T LPETI ++ NL  L LSNN+++ +P     + NL  +N   NPL     +PP
Sbjct: 232 --NEITCLPETIKNMKNLGTLVLSNNKLQDIPGCMEEMTNLRFVNFRDNPLRLEVTLPP 288

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
255578319	456	leucine-rich repeat-containing protein,	0.980	0.984	0.709	1e-180
297844192	463	leucine-rich repeat family protein [Arab	0.986	0.976	0.592	1e-151
18391461	464	ras group-related protein LRR 3 [Arabido	0.989	0.976	0.584	1e-149
8698744	492	Contains similarity to CYR1 from Candida	0.989	0.920	0.551	1e-144
356497728	461	PREDICTED: leucine-rich repeat-containin	0.991	0.984	0.593	1e-141
224110878	447	predicted protein [Populus trichocarpa]	0.888	0.910	0.630	1e-141
449434977	501	PREDICTED: protein scribble homolog [Cuc	0.982	0.898	0.547	1e-141
357485651	456	Leucine-rich-repeat protein-like protein	0.962	0.967	0.571	1e-140
30688342	471	plant intracellular ras group-related LR	0.997	0.970	0.542	1e-138
297818186	471	leucine-rich repeat family protein [Arab	0.997	0.970	0.552	1e-136

>gi|255578319|ref|XP_002530026.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223530442|gb|EEF32326.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 325/458 (70%), Positives = 372/458 (81%), Gaps = 9/458 (1%)

Query: 6   ENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLL 65
           + +P+L ++LSQL+PN HPPLP  +Y NLIT++P L N  VISSLTQ +P  I Q+  LL
Sbjct: 3   QEFPILSYLLSQLDPNSHPPLPQVIYQNLITQFPQLNNPKVISSLTQSIPSTIIQSLFLL 62

Query: 66  ---GTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLD 122
              G RPDPD VS AR K+ +  ET     EV++Y+AVV++EEMH + ERQ +E EE L 
Sbjct: 63  KALGPRPDPDAVSTARIKIQELGETGK---EVEIYKAVVRMEEMHNEYERQLREVEERLS 119

Query: 123 RVYDSVSAEL--VDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNL 180
            VY +V  E   V VNE+VV IL++ ESG VVE VDL+ RQLKLLPEAFG+L GLV LNL
Sbjct: 120 GVYKNVVGEFEDVKVNEEVVSILKQVESGSVVERVDLSGRQLKLLPEAFGKLHGLVLLNL 179

Query: 181 SRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR 240
           SRN LE +PDSIAGLQKLEELDVSSNLL SLPDSIGLL  LKVLNVSGNKLN LPESIA 
Sbjct: 180 SRNQLEVLPDSIAGLQKLEELDVSSNLLLSLPDSIGLLRTLKVLNVSGNKLNYLPESIAL 239

Query: 241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE 300
           CSSLVELDASFNNLV LPTNIGYGL NLERLSI+LNK+   PPSICEM+SL+YLD HFNE
Sbjct: 240 CSSLVELDASFNNLVSLPTNIGYGLTNLERLSIQLNKIHILPPSICEMKSLRYLDVHFNE 299

Query: 301 LHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE 360
           LHGLP AIG+LT LEVL+LSSNF+DLTELPET+GDL NLREL+LSNNQIRALPDTF RLE
Sbjct: 300 LHGLPYAIGRLTNLEVLDLSSNFSDLTELPETVGDLANLRELNLSNNQIRALPDTFGRLE 359

Query: 361 NLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGW 420
           NL  L LD+NPLVIPP EIVNKGV+AV+EFM KRW  +IAE QQ+ +LE N QQQ+Q+GW
Sbjct: 360 NLANLILDENPLVIPPKEIVNKGVQAVREFMQKRWLDMIAEEQQRRMLEVN-QQQSQTGW 418

Query: 421 LAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
           LAWG+S+L NFVSGVSQSV GY+GG K   DPYLDQQL
Sbjct: 419 LAWGNSLLNNFVSGVSQSVSGYIGGTKPPQDPYLDQQL 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844192|ref|XP_002889977.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297335819|gb|EFH66236.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/469 (59%), Positives = 355/469 (75%), Gaps = 17/469 (3%)

Query: 1   MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
           M+ + E +PLL +VL   +P  H P  P +  +L  +YP LTN  VISSL + +P  ITQ
Sbjct: 1   MDHDLEIFPLLSYVLHHSDPASHAPPSPTIQQSLANRYPLLTNPYVISSLIESIPSTITQ 60

Query: 61  TRLLLGT---RPDPDTVSAARSKLAQFQETATSSPE-----VDLYRAVVKLEEMHEDCER 112
           T  + G+   RPDP  VS+ARSK+A+ +E  + SPE       +Y  VV+LEE+HE  E+
Sbjct: 61  TLYVFGSLGPRPDPLAVSSARSKIAEIRENDSLSPEDAAKEEQVYVTVVRLEEVHEGYEK 120

Query: 113 QFKEAEEMLDRVYDSVSAELV---DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAF 169
           Q ++ EE L RVY S    L    +VNE+V+ +++E E G VVE +DL+DR+LKLLP+A 
Sbjct: 121 QLRDLEEQLCRVYASAVESLSGGDEVNEEVLAVIKEVEDGGVVERIDLSDRELKLLPDAL 180

Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229
           G++ GLVSLNLSRN L+ +PD+I+GL+KLEELD+SSN L SLPDSIG+LLNL++LNV+GN
Sbjct: 181 GKIVGLVSLNLSRNNLKFLPDTISGLEKLEELDLSSNRLVSLPDSIGMLLNLRILNVTGN 240

Query: 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMR 289
           KL +LPESIA+C SLVELDASFNNL  LP NIGYGLLNLERLSI+LNK+R FP S+CEMR
Sbjct: 241 KLTSLPESIAQCRSLVELDASFNNLTSLPANIGYGLLNLERLSIQLNKIRFFPNSMCEMR 300

Query: 290 SLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI 349
           SL+Y+DAH NE+HGLP AIG+LT LEV+NLSSNF+DLTELP+TI DL NLRELDLSNNQI
Sbjct: 301 SLRYIDAHMNEIHGLPIAIGRLTSLEVMNLSSNFSDLTELPDTISDLANLRELDLSNNQI 360

Query: 350 RALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILE 409
           R LP++FFRLE L KLNLDQNPL  PP E+VN+  EAV+EFM KRW+ ++ E Q +S++E
Sbjct: 361 RVLPNSFFRLEKLEKLNLDQNPLEFPPQEMVNQSAEAVREFMRKRWEEMVEEEQLRSVIE 420

Query: 410 ANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
           A KQ+ A +GWL+WGSS++T+  SG     G + G  K   D +LD+QL
Sbjct: 421 AEKQRGA-TGWLSWGSSIVTSLFSG-----GTHGGAAKKPKDSFLDEQL 463

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391461|ref|NP_563921.1| ras group-related protein LRR 3 [Arabidopsis thaliana] gi|17063165|gb|AAL32979.1| At1g12970/F13K23_18 [Arabidopsis thaliana] gi|21700931|gb|AAM70589.1| At1g12970/F13K23_18 [Arabidopsis thaliana] gi|57868148|gb|AAW57412.1| plant intracellular Ras-group-related LRR protein 3 [Arabidopsis thaliana] gi|332190834|gb|AEE28955.1| ras group-related protein LRR 3 [Arabidopsis thaliana]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/469 (58%), Positives = 347/469 (73%), Gaps = 16/469 (3%)

Query: 1   MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
           M+ + E +PLL +VL   +P  H P    +  +L  +YP LTN  VISSL + +P  ITQ
Sbjct: 1   MDHDLEIFPLLSYVLHHSDPASHAPPSLAIQQSLANRYPLLTNPYVISSLIESIPSTITQ 60

Query: 61  TRLLLGT---RPDPDTVSAARSKLAQFQETATSSPE-----VDLYRAVVKLEEMHEDCER 112
           T  + G+   RPDP  VS+ARSK+ + +E  + SPE       +Y AVV LEE+HE  E+
Sbjct: 61  TLFVFGSLGPRPDPLAVSSARSKIREIKENDSLSPEDAAKEEQVYAAVVSLEEVHEGYEK 120

Query: 113 QFKEAEEMLDRVYDSVSAELV---DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAF 169
           Q ++ EE + RVY S    L    +VNE+V+ ++++AE G VVE +DL+D +LKLLP+A 
Sbjct: 121 QLRDLEEEIGRVYASAVESLSGGDEVNEEVLAVIKDAEDGGVVERIDLSDHELKLLPDAL 180

Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229
           G++ GLVSLN+SRN L  +PD+I+GL+KLEELD+SSN L  LPDSIGLLLNL++LNV+GN
Sbjct: 181 GKIVGLVSLNVSRNNLRFLPDTISGLEKLEELDLSSNRLVFLPDSIGLLLNLRILNVTGN 240

Query: 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMR 289
           KL  LPESIA+C SLVELDASFNNL  LP N GYGLLNLERLSI+LNK+R FP SICEMR
Sbjct: 241 KLTLLPESIAQCRSLVELDASFNNLTSLPANFGYGLLNLERLSIQLNKIRFFPNSICEMR 300

Query: 290 SLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI 349
           SL+YLDAH NE+HGLP AIG+LT LEV+NLSSNF+DL ELP+TI DL NLRELDLSNNQI
Sbjct: 301 SLRYLDAHMNEIHGLPIAIGRLTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNNQI 360

Query: 350 RALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILE 409
           R LPD+FFRLE L KLNLDQNPL  PP E+VN+  EAV+EFM KRW+ ++ E Q +S++E
Sbjct: 361 RVLPDSFFRLEKLEKLNLDQNPLEYPPQEMVNQSAEAVREFMRKRWEEMVEEEQLRSVIE 420

Query: 410 ANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
           A KQQ   +GWL+WGSS++T+  SG     G + G  K   + +LD+QL
Sbjct: 421 AEKQQGGATGWLSWGSSIVTSLFSG-----GTHGGAAKKPKNSFLDEQL 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8698744|gb|AAF78502.1|AC012187_22 Contains similarity to CYR1 from Candida albicans gb|AB034965 and contains multiple Leucine Rich PF|00560 repeats [Arabidopsis thaliana]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/497 (55%), Positives = 347/497 (69%), Gaps = 44/497 (8%)

Query: 1   MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
           M+ + E +PLL +VL   +P  H P    +  +L  +YP LTN  VISSL + +P  ITQ
Sbjct: 1   MDHDLEIFPLLSYVLHHSDPASHAPPSLAIQQSLANRYPLLTNPYVISSLIESIPSTITQ 60

Query: 61  TRLLLGT---RPDPDTVSAARSKLAQFQETATSSPE-----VDLYRAVVKLEEMHEDCER 112
           T  + G+   RPDP  VS+ARSK+ + +E  + SPE       +Y AVV LEE+HE  E+
Sbjct: 61  TLFVFGSLGPRPDPLAVSSARSKIREIKENDSLSPEDAAKEEQVYAAVVSLEEVHEGYEK 120

Query: 113 QFKEAEEMLDRVYDSVSAELV---DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAF 169
           Q ++ EE + RVY S    L    +VNE+V+ ++++AE G VVE +DL+D +LKLLP+A 
Sbjct: 121 QLRDLEEEIGRVYASAVESLSGGDEVNEEVLAVIKDAEDGGVVERIDLSDHELKLLPDAL 180

Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229
           G++ GLVSLN+SRN L  +PD+I+GL+KLEELD+SSN L  LPDSIGLLLNL++LNV+GN
Sbjct: 181 GKIVGLVSLNVSRNNLRFLPDTISGLEKLEELDLSSNRLVFLPDSIGLLLNLRILNVTGN 240

Query: 230 KLNTLPESIARCS----------------------------SLVELDASFNNLVCLPTNI 261
           KL  LPESIA+C                             SLVELDASFNNL  LP N 
Sbjct: 241 KLTLLPESIAQCRFCAFTFVHLSFQLSLLPNSEERYVLVIRSLVELDASFNNLTSLPANF 300

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
           GYGLLNLERLSI+LNK+R FP SICEMRSL+YLDAH NE+HGLP AIG+LT LEV+NLSS
Sbjct: 301 GYGLLNLERLSIQLNKIRFFPNSICEMRSLRYLDAHMNEIHGLPIAIGRLTNLEVMNLSS 360

Query: 322 NFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           NF+DL ELP+TI DL NLRELDLSNNQIR LPD+FFRLE L KLNLDQNPL  PP E+VN
Sbjct: 361 NFSDLIELPDTISDLANLRELDLSNNQIRVLPDSFFRLEKLEKLNLDQNPLEYPPQEMVN 420

Query: 382 KGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGG 441
           +  EAV+EFM KRW+ ++ E Q +S++EA KQQ   +GWL+WGSS++T+  SG     G 
Sbjct: 421 QSAEAVREFMRKRWEEMVEEEQLRSVIEAEKQQGGATGWLSWGSSIVTSLFSG-----GT 475

Query: 442 YLGGGKTSADPYLDQQL 458
           + G  K   + +LD+QL
Sbjct: 476 HGGAAKKPKNSFLDEQL 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497728|ref|XP_003517711.1| PREDICTED: leucine-rich repeat-containing protein 7-like [Glycine max]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 276/465 (59%), Positives = 360/465 (77%), Gaps = 11/465 (2%)

Query: 1   MNPNPE--NYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVP-VQ 57
           MNPNP   ++PLL  +L+ L+P  HPPLP ++  +L+T++PHL + +V+SSL +    + 
Sbjct: 1   MNPNPNTNDFPLLSHLLNHLDPQTHPPLPAELDQSLLTQFPHLNHPSVLSSLARHASTLN 60

Query: 58  ITQTRLLL---GTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQF 114
           +T T  LL   G RPDP  V+AAR+++A          E  +  A+V++++ HE+C +Q 
Sbjct: 61  VTPTLSLLRTLGPRPDPSAVAAARARIAD-PHAREDGGEAHVVHALVRVDDTHEECVKQL 119

Query: 115 KEAEEMLDRVY-DSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLR 173
           + +E+ L   Y +SV   + +V+E VV++L++AES  V E VDL+   L++LPEAFG++R
Sbjct: 120 RASEKKLLEAYAESVKGVVEEVSEGVVRVLKKAESEEV-ERVDLSGSHLRILPEAFGKIR 178

Query: 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
           GLV LNLS+N LE +PDSIAGLQ+L ELDVSSN+L+SLPDSIGLL+NLK+ NVS NKL  
Sbjct: 179 GLVVLNLSQNQLEVIPDSIAGLQRLVELDVSSNVLESLPDSIGLLVNLKIFNVSANKLTA 238

Query: 234 LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293
           LPESIA C SLVELDASFNNL+CLPTN+G+GL+NLE+L I LNK+R  P SI EM+SL++
Sbjct: 239 LPESIALCRSLVELDASFNNLMCLPTNMGFGLVNLEKLLIHLNKIRFLPASIGEMKSLRH 298

Query: 294 LDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353
           LD HFNELHGLP++IGKLT LE LN+SSNF+D+TELPET+GDL+NLRELDLSNNQIRALP
Sbjct: 299 LDVHFNELHGLPQSIGKLTNLEYLNVSSNFSDMTELPETLGDLVNLRELDLSNNQIRALP 358

Query: 354 DTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQ 413
            +F RLE LTKLNLDQNP+++PP+E+VN+G EAVKEFMAK W  +I EAQQKS+ E  + 
Sbjct: 359 YSFGRLEKLTKLNLDQNPIIVPPIEVVNQGAEAVKEFMAKWWLDLIEEAQQKSMSET-QN 417

Query: 414 QQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
           QQAQ+GWLAWG+S+L N V+ VS+SV  Y G  K   DP+LDQQL
Sbjct: 418 QQAQTGWLAWGASLLNN-VAEVSESVAEYFGAKKAPRDPWLDQQL 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110878|ref|XP_002315667.1| predicted protein [Populus trichocarpa] gi|222864707|gb|EEF01838.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/425 (63%), Positives = 327/425 (76%), Gaps = 18/425 (4%)

Query: 6   ENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTRLLL 65
           +++P+L ++LSQ +PN       Q   NL   +P+L    V+SSLTQ +P   T   LLL
Sbjct: 11  DDFPILSYLLSQTDPNSQ-----QFDQNLSAHFPYLNYPKVLSSLTQAIPSSATNIFLLL 65

Query: 66  ---GTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLD 122
              G RP+PD VS ARS L Q QE   +    ++Y+AV+K EEMHE+ ERQ KE EEML 
Sbjct: 66  KSLGPRPNPDVVSMARSNLTQMQEPGKT----EIYKAVLKFEEMHEEYERQLKEVEEMLV 121

Query: 123 RVYDSVSAELVD----VNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSL 178
            VY  V    ++    V+E+VV IL+EAESG  VE V+L+ RQL+L+PE+ GRL GL+ L
Sbjct: 122 GVYKDVVVREIESGEQVDEEVVAILREAESGGAVERVNLSARQLRLIPESIGRLHGLLVL 181

Query: 179 NLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI 238
           NLS+N LE +PDSIAGL+KL ELDVSSNLL  LPDSIGLL NLK+LNVS NK+  LPESI
Sbjct: 182 NLSQNQLEVLPDSIAGLEKLVELDVSSNLLVFLPDSIGLLRNLKILNVSANKVKALPESI 241

Query: 239 ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHF 298
           A  SSLVE+DASFNNLV LP NIGYGL+NLERLS++LNK+R  PPSICEM+SL++LD HF
Sbjct: 242 ALSSSLVEIDASFNNLVSLPANIGYGLVNLERLSVQLNKIRLLPPSICEMKSLRFLDVHF 301

Query: 299 NELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFR 358
           N L GLPRAIG+LT LEVLNLSSNF+DL ELPE IGDLINLRELDLSNNQIRALPD F R
Sbjct: 302 NMLRGLPRAIGRLTNLEVLNLSSNFSDLEELPEEIGDLINLRELDLSNNQIRALPDRFAR 361

Query: 359 LENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQS 418
           LENLTKL+L++NPL++PP EIVNKGV+A++EFMAKRW  ++ E +Q +++EAN QQ AQS
Sbjct: 362 LENLTKLDLNENPLLVPPKEIVNKGVQAIREFMAKRWLDMV-EEKQTNMVEAN-QQAAQS 419

Query: 419 GWLAW 423
           GWL +
Sbjct: 420 GWLCF 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434977|ref|XP_004135272.1| PREDICTED: protein scribble homolog [Cucumis sativus] gi|449478610|ref|XP_004155368.1| PREDICTED: protein scribble homolog [Cucumis sativus]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 271/495 (54%), Positives = 347/495 (70%), Gaps = 45/495 (9%)

Query: 6   ENYPLLVFVLSQLNP---NDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQTR 62
           E++P+L +VLSQL+P      P LP +   +++ K  HL N  V++S+ Q +P  +T T 
Sbjct: 10  EHFPILCYVLSQLDPIPGKSSPQLPFETKESVLAKLSHLNNPKVLASIIQVIPNNLTHTL 69

Query: 63  ---LLLGTRPDPDTVSAARSKLAQFQET------------------------------AT 89
              + LG RPD   V+AA  ++ + Q T                                
Sbjct: 70  SALISLGPRPDSSAVAAACDRIIEIQSTLQKNLQEIEDEAGHGGFEAEDRVEREKKLRRA 129

Query: 90  SSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAEL-----VDVNEDVVKILQ 144
           +  E ++Y+AV +LEEMHE  E+Q    ++ +  VY+S  AEL     +DVNE+V++IL+
Sbjct: 130 AEKETEIYKAVARLEEMHEGYEKQLIAVQDRVVEVYESAVAELDKGTNLDVNEEVIRILK 189

Query: 145 EAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVS 204
           EA SGVV E VDL  +Q++ LPE FG+LR L+ LNLS N LE +PDSIAGLQKL+ LD+S
Sbjct: 190 EAASGVV-EKVDLFGQQIRFLPEEFGKLRRLIDLNLSHNQLEVLPDSIAGLQKLQRLDIS 248

Query: 205 SNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG 264
           SNLL+SLPDSIG+L+NLKV+ VSGNKL  LPE+I  CSSLVELDASFNNL  LP NIGYG
Sbjct: 249 SNLLESLPDSIGVLINLKVVIVSGNKLKVLPETITGCSSLVELDASFNNLQGLPINIGYG 308

Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
           L+NLERLSI+LNK+  FP SIC++RSLKY DAHFN+LH LP AIG+LT LEVLNLS NFN
Sbjct: 309 LVNLERLSIQLNKICYFPTSICQLRSLKYFDAHFNQLHALPPAIGRLTSLEVLNLSGNFN 368

Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGV 384
           +LTE+PE++ DL NL+ELDLS+NQI+ALPD F RLE L +LN+DQNPLVIPPMEIV+KG 
Sbjct: 369 NLTEVPESMSDLCNLKELDLSDNQIKALPDRFGRLEKLLRLNMDQNPLVIPPMEIVDKGA 428

Query: 385 EAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLG 444
           +AVK+FM  RW  ++AE +QKS+ EAN  ++ QSGWL WGSSML N  SGV Q++  Y G
Sbjct: 429 QAVKDFMDMRWADLVAE-KQKSMHEANMAEK-QSGWLTWGSSMLANVTSGVVQTISDYTG 486

Query: 445 G-GKTSADPYLDQQL 458
           G  +   DP+L QQL
Sbjct: 487 GRNENPKDPWLYQQL 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485651|ref|XP_003613113.1| Leucine-rich-repeat protein-like protein [Medicago truncatula] gi|355514448|gb|AES96071.1| Leucine-rich-repeat protein-like protein [Medicago truncatula]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/469 (57%), Positives = 353/469 (75%), Gaps = 28/469 (5%)

Query: 2   NPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVP-VQITQ 60
           NPNP ++P+L F+L+ L+P  HPPLPPQ++ NL+T +PHLTNS +I SLT  +  + ITQ
Sbjct: 4   NPNPNDFPILCFLLNHLHPQTHPPLPPQLHQNLLTNFPHLTNSKLIPSLTHLITNLNITQ 63

Query: 61  TRLLL---GTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEA 117
           T   L   G RP+P +V+A+R              +V +Y+A++++E+MH+ C +Q + A
Sbjct: 64  TLSFLTTLGPRPNPSSVAASRDV------------DVHVYQALLRVEDMHDQCVKQLRVA 111

Query: 118 EEML--------DRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAF 169
           EE L        +++ + V  E  DVNE V  +L++ E G VVE VD +  +L++ PE  
Sbjct: 112 EEKLVEGYGVFVEKMKEEVGDE--DVNEGVGGLLRKGEEGEVVEKVDFSGMKLRIFPEGV 169

Query: 170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229
            +++GLV +N + N L+ +PDSI GLQKL ELD+SSNLL SLPD IGLL+NLKVLN+SGN
Sbjct: 170 EKMKGLVVINFANNQLQVIPDSITGLQKLAELDMSSNLLPSLPDCIGLLVNLKVLNLSGN 229

Query: 230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMR 289
           KL TLPESI+ C SLVELD SFNNL+CLPTNI YGL+NLE+LSI LNK+R  P SI EM+
Sbjct: 230 KLTTLPESISLCRSLVELDVSFNNLMCLPTNIAYGLVNLEKLSIHLNKIRFLPLSIGEMK 289

Query: 290 SLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI 349
           SL+YLD HFNELHGLP++IGKLT LE LN+SSNFND+T+LPET+G L+NL+ELDLSNNQI
Sbjct: 290 SLRYLDVHFNELHGLPQSIGKLTNLEYLNISSNFNDMTQLPETVGGLVNLKELDLSNNQI 349

Query: 350 RALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILE 409
           RALP  F RLE LTKLNLDQNP+++PP+E++N+GVEA+KEFMAKRW   I E +QK++ E
Sbjct: 350 RALPYAFCRLEKLTKLNLDQNPIIVPPLEVLNQGVEAMKEFMAKRWLEHIDEERQKNMAE 409

Query: 410 ANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
             + QQAQ+GWLAWG+S+L+N V+GVS+SV  Y G  K   D +++QQL
Sbjct: 410 T-QNQQAQTGWLAWGTSLLSN-VAGVSESVVEYFGVRKAPRDTWMEQQL 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688342|ref|NP_189281.2| plant intracellular ras group-related LRR 2 [Arabidopsis thaliana] gi|9293927|dbj|BAB01830.1| leucine-rich-repeat protein-like [Arabidopsis thaliana] gi|26453000|dbj|BAC43576.1| unknown protein [Arabidopsis thaliana] gi|29824149|gb|AAP04035.1| unknown protein [Arabidopsis thaliana] gi|57868146|gb|AAW57411.1| plant intracellular Ras-group-related LRR protein 2 [Arabidopsis thaliana] gi|332643646|gb|AEE77167.1| plant intracellular ras group-related LRR 2 [Arabidopsis thaliana]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/472 (54%), Positives = 340/472 (72%), Gaps = 15/472 (3%)

Query: 1   MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
           M+ + + +PLL +VL Q + N H P        L+  +P L+N  ++S LTQ +P  ITQ
Sbjct: 1   MDHDLDKFPLLSYVLHQHDSNLHAPPSMAAQETLLPSFPLLSNPEIMSMLTQSIPTTITQ 60

Query: 61  TRLL---LGTRPDPDTVSAARSKLAQFQETAT---SSPEVDLYRAVVKLEEMHEDCERQF 114
           T  +   LG+RPDP  VS+AR K+AQ  ++ +   ++ E ++Y  VV+L+E+H+  E++ 
Sbjct: 61  TLFVFNSLGSRPDPLAVSSARFKIAQIMDSLSPEEAAKESEIYAGVVRLDEVHDSYEKKL 120

Query: 115 KEAEEMLDRVYDSVSAELV----DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFG 170
           K+ EE L RVY +    ++    +VNE V+ +L+EAESG  VE +DL+ ++LKL+PEAF 
Sbjct: 121 KDTEEELSRVYSTEVESMLRSGEEVNEKVLAVLKEAESGGTVERIDLSSQELKLIPEAFW 180

Query: 171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK 230
           ++ GLV LNLS N L  +PD+I+ L+KLEELDVSSN L+SLPDSIG+LLNL++LNV+ N 
Sbjct: 181 KVVGLVYLNLSGNDLTFIPDAISKLKKLEELDVSSNSLESLPDSIGMLLNLRILNVNANN 240

Query: 231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRS 290
           L  LPESIA C SLVELDAS+NNL  LPTNIGYGL NLERLSI+LNKLR FP SI EM +
Sbjct: 241 LTALPESIAHCRSLVELDASYNNLTSLPTNIGYGLQNLERLSIQLNKLRYFPGSISEMYN 300

Query: 291 LKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR 350
           LKYLDAH NE+HG+P +IG+LT+LEVLNLSSNFN+L  +P+TI DL NLRELDLSNNQI+
Sbjct: 301 LKYLDAHMNEIHGIPNSIGRLTKLEVLNLSSNFNNLMGVPDTITDLTNLRELDLSNNQIQ 360

Query: 351 ALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEA 410
           A+PD+F+RL  L KLNLDQNPL IP  E+  +G E V+EFM KRW  I+AE QQ+  +EA
Sbjct: 361 AIPDSFYRLRKLEKLNLDQNPLEIPSQEVATQGAEVVREFMRKRWGDIMAEQQQRIGVEA 420

Query: 411 NKQQQAQSGWLAWGSSMLTNFVSGVSQSVG----GYLGGGKTSADPYLDQQL 458
            +    ++GW+ WG+SM+TN VSGV+ ++G       GG K   D Y   Q+
Sbjct: 421 ERHGD-ENGWVYWGTSMVTNLVSGVTHTIGFGGATSDGGDKKPGDSYFYHQI 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818186|ref|XP_002876976.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297322814|gb|EFH53235.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/472 (55%), Positives = 347/472 (73%), Gaps = 15/472 (3%)

Query: 1   MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
           M+ + + +PLL +VL QL+ N H P        L+  +P L++  V+SSLTQ +P  ITQ
Sbjct: 1   MDHDLDKFPLLSYVLHQLDSNLHAPPSMAAQETLLPSFPLLSDPQVMSSLTQSIPTTITQ 60

Query: 61  TRLL---LGTRPDPDTVSAARSKLAQFQETAT---SSPEVDLYRAVVKLEEMHEDCERQF 114
           T  +   LG+RPDP  VS+ARSK+AQ  ++ +   ++ E ++Y  VV+L+E+H+  E++ 
Sbjct: 61  TLFVFNSLGSRPDPLAVSSARSKIAQIMDSLSPEEAAKESEIYTGVVRLDEVHDSYEKKL 120

Query: 115 KEAEEMLDRVYDSVSAELV----DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFG 170
           K+ EE L RVY +    L+    +VNE+VV +L+ AESG +VE +DL+ ++LKLLPEAF 
Sbjct: 121 KDIEEELSRVYATEVESLLRSGEEVNEEVVAVLKVAESGEIVERIDLSGQELKLLPEAFW 180

Query: 171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK 230
           ++ GLV LNLS N L  +P++I+ L+KLEELDVSSN L+SLPDSIG+LLNL++LNV+GN 
Sbjct: 181 KVVGLVYLNLSGNDLTVIPEAISKLKKLEELDVSSNSLESLPDSIGMLLNLRILNVNGNN 240

Query: 231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRS 290
           L  LPESIA C SLVELDAS+NNL  LPTNIGYGL NLERLSI+LNKLR FP SI EM +
Sbjct: 241 LTALPESIAHCRSLVELDASYNNLTTLPTNIGYGLQNLERLSIQLNKLRYFPGSISEMYN 300

Query: 291 LKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR 350
           LKYLDAH NE+HG+P +IG+LT+LEVLNLSSNFN+L  +P+TI DL NLRELDLSNNQI+
Sbjct: 301 LKYLDAHMNEIHGIPNSIGRLTKLEVLNLSSNFNNLMGVPDTITDLTNLRELDLSNNQIQ 360

Query: 351 ALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEA 410
           A+PD+F+RL  L KLNLD+NPL IP  ++  +G EAV+EFM KRW  I+AE QQ+  +EA
Sbjct: 361 AIPDSFYRLRKLEKLNLDENPLEIPSQKVAGQGAEAVREFMRKRWGEIMAEQQQRIGVEA 420

Query: 411 NKQQQAQSGWLAWGSSMLTNFVSGVSQSVG----GYLGGGKTSADPYLDQQL 458
            +    ++GW+ WG+SM+TN VSGV+Q++G       GG K   D Y   Q+
Sbjct: 421 ERHGN-ETGWVYWGTSMVTNLVSGVTQTIGFGGASSDGGDKKPGDSYFYHQI 471

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2010326	464	PIRL3 "AT1G12970" [Arabidopsis	0.989	0.976	0.586	2.2e-137
TAIR|locus:2088807	471	PIRL2 "AT3G26500" [Arabidopsis	0.997	0.970	0.544	2e-127
TAIR|locus:2166429	506	PIRL1 "plant intracellular ras	0.825	0.747	0.542	4.2e-102
TAIR|locus:2074728	499	PIRL9 "plant intracellular ras	0.768	0.705	0.571	1.9e-99
TAIR|locus:2117617	549	PIRL4 "plant intracellular ras	0.641	0.535	0.401	4.6e-50
TAIR|locus:2120825	383	PIRL8 "AT4G26050" [Arabidopsis	0.604	0.723	0.408	6.7e-49
TAIR|locus:2827587	526	PIRL5 "AT2G17440" [Arabidopsis	0.641	0.558	0.406	6.7e-49
TAIR|locus:2123899	373	PIRL7 "plant intracellular ras	0.554	0.680	0.431	1.1e-48
TAIR|locus:2047595	380	PIRL6 "AT2G19330" [Arabidopsis	0.537	0.647	0.449	2.9e-48
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.491	0.321	0.416	6.2e-35

TAIR|locus:2010326 PIRL3 "AT1G12970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1345 (478.5 bits), Expect = 2.2e-137, P = 2.2e-137
 Identities = 275/469 (58%), Positives = 347/469 (73%)

Query:     1 MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
             M+ + E +PLL +VL   +P  H P    +  +L  +YP LTN  VISSL + +P  ITQ
Sbjct:     1 MDHDLEIFPLLSYVLHHSDPASHAPPSLAIQQSLANRYPLLTNPYVISSLIESIPSTITQ 60

Query:    61 TRLL---LGTRPDPDTVSAARSKLAQFQETATSSPE-----VDLYRAVVKLEEMHEDCER 112
             T  +   LG RPDP  VS+ARSK+ + +E  + SPE       +Y AVV LEE+HE  E+
Sbjct:    61 TLFVFGSLGPRPDPLAVSSARSKIREIKENDSLSPEDAAKEEQVYAAVVSLEEVHEGYEK 120

Query:   113 QFKEAEEMLDRVYDSVSAELV---DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAF 169
             Q ++ EE + RVY S    L    +VNE+V+ ++++AE G VVE +DL+D +LKLLP+A 
Sbjct:   121 QLRDLEEEIGRVYASAVESLSGGDEVNEEVLAVIKDAEDGGVVERIDLSDHELKLLPDAL 180

Query:   170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN 229
             G++ GLVSLN+SRN L  +PD+I+GL+KLEELD+SSN L  LPDSIGLLLNL++LNV+GN
Sbjct:   181 GKIVGLVSLNVSRNNLRFLPDTISGLEKLEELDLSSNRLVFLPDSIGLLLNLRILNVTGN 240

Query:   230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMR 289
             KL  LPESIA+C SLVELDASFNNL  LP N GYGLLNLERLSI+LNK+R FP SICEMR
Sbjct:   241 KLTLLPESIAQCRSLVELDASFNNLTSLPANFGYGLLNLERLSIQLNKIRFFPNSICEMR 300

Query:   290 SLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI 349
             SL+YLDAH NE+HGLP AIG+LT LEV+NLSSNF+DL ELP+TI DL NLRELDLSNNQI
Sbjct:   301 SLRYLDAHMNEIHGLPIAIGRLTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNNQI 360

Query:   350 RALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILE 409
             R LPD+FFRLE L KLNLDQNPL  PP E+VN+  EAV+EFM KRW+ ++ E Q +S++E
Sbjct:   361 RVLPDSFFRLEKLEKLNLDQNPLEYPPQEMVNQSAEAVREFMRKRWEEMVEEEQLRSVIE 420

Query:   410 ANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
             A KQQ   +GWL+WGSS++T+  SG     G + G  K   + +LD+QL
Sbjct:   421 AEKQQGGATGWLSWGSSIVTSLFSG-----GTHGGAAKKPKNSFLDEQL 464

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2088807 PIRL2 "AT3G26500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 257/472 (54%), Positives = 341/472 (72%)

Query:     1 MNPNPENYPLLVFVLSQLNPNDHPPLPPQVYNNLITKYPHLTNSTVISSLTQGVPVQITQ 60
             M+ + + +PLL +VL Q + N H P        L+  +P L+N  ++S LTQ +P  ITQ
Sbjct:     1 MDHDLDKFPLLSYVLHQHDSNLHAPPSMAAQETLLPSFPLLSNPEIMSMLTQSIPTTITQ 60

Query:    61 TRLL---LGTRPDPDTVSAARSKLAQFQETAT---SSPEVDLYRAVVKLEEMHEDCERQF 114
             T  +   LG+RPDP  VS+AR K+AQ  ++ +   ++ E ++Y  VV+L+E+H+  E++ 
Sbjct:    61 TLFVFNSLGSRPDPLAVSSARFKIAQIMDSLSPEEAAKESEIYAGVVRLDEVHDSYEKKL 120

Query:   115 KEAEEMLDRVYDSVSAELV----DVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFG 170
             K+ EE L RVY +    ++    +VNE V+ +L+EAESG  VE +DL+ ++LKL+PEAF 
Sbjct:   121 KDTEEELSRVYSTEVESMLRSGEEVNEKVLAVLKEAESGGTVERIDLSSQELKLIPEAFW 180

Query:   171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK 230
             ++ GLV LNLS N L  +PD+I+ L+KLEELDVSSN L+SLPDSIG+LLNL++LNV+ N 
Sbjct:   181 KVVGLVYLNLSGNDLTFIPDAISKLKKLEELDVSSNSLESLPDSIGMLLNLRILNVNANN 240

Query:   231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRS 290
             L  LPESIA C SLVELDAS+NNL  LPTNIGYGL NLERLSI+LNKLR FP SI EM +
Sbjct:   241 LTALPESIAHCRSLVELDASYNNLTSLPTNIGYGLQNLERLSIQLNKLRYFPGSISEMYN 300

Query:   291 LKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR 350
             LKYLDAH NE+HG+P +IG+LT+LEVLNLSSNFN+L  +P+TI DL NLRELDLSNNQI+
Sbjct:   301 LKYLDAHMNEIHGIPNSIGRLTKLEVLNLSSNFNNLMGVPDTITDLTNLRELDLSNNQIQ 360

Query:   351 ALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEA 410
             A+PD+F+RL  L KLNLDQNPL IP  E+  +G E V+EFM KRW  I+AE QQ+  +EA
Sbjct:   361 AIPDSFYRLRKLEKLNLDQNPLEIPSQEVATQGAEVVREFMRKRWGDIMAEQQQRIGVEA 420

Query:   411 NKQQQAQSGWLAWGSSMLTNFVSGVSQSVG--GYL--GGGKTSADPYLDQQL 458
              +    ++GW+ WG+SM+TN VSGV+ ++G  G    GG K   D Y   Q+
Sbjct:   421 ERHGD-ENGWVYWGTSMVTNLVSGVTHTIGFGGATSDGGDKKPGDSYFYHQI 471

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166429 PIRL1 "plant intracellular ras group-related LRR 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 216/398 (54%), Positives = 282/398 (70%)

Query:    71 PDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVS- 129
             P+ +  A  +  Q +  A    ++  Y++++KL E+HE  E+  KEAEE L R+Y+S   
Sbjct:   119 PNDIDVAEKE--QKRREAVEQEKI-WYKSILKLNELHESYEKLLKEAEERLVRIYESAEK 175

Query:   130 ---------AELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNL 180
                      A  V+VNE+VV ILQ+A    + + VDL+ R+LKLLPEAFG+++GL+ LNL
Sbjct:   176 NAAAVAEEEAAEVEVNEEVVSILQQAAENPL-DRVDLSGRKLKLLPEAFGKIQGLLVLNL 234

Query:   181 SRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR 240
               N L+A+PDSIAGL  L ELDVS+N L++LPDSIGLL  LK+LNVS NKL TLP+SI  
Sbjct:   235 YNNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICH 294

Query:   241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE 300
             C SLV LDAS+NNL  LPTNIG+ L+ LE+L I LNK+R+ P SI EMRSL+YLDAHFNE
Sbjct:   295 CGSLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNE 354

Query:   301 LHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE 360
             L+GLP + G LT LE LNLSSNF+DL +LP + GDLI+L+ELDLSNNQI +LPD F  L 
Sbjct:   355 LNGLPNSFGLLTNLEYLNLSSNFSDLQDLPASFGDLISLQELDLSNNQIHSLPDAFGTLV 414

Query:   361 NLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQQQAQSGW 420
             NLTKLNLDQNPLV+PP E+V +GV+AVK +M KRW  ++ E ++ + ++ ++  Q  + W
Sbjct:   415 NLTKLNLDQNPLVVPPDEVVKQGVDAVKMYMGKRWVSMLEEEEKMANMK-DEMDQTNTDW 473

Query:   421 LAWGSSMLTNFVSGVSQSVGGYLGGGKTSADPYLDQQL 458
             L   +S L  +V+ VS+    YLG      DPYLDQQL
Sbjct:   474 LTRTTSKLKTYVTEVSE----YLGSNPPR-DPYLDQQL 506

GO:0005634 "nucleus" evidence=ISM

GO:0009555 "pollen development" evidence=IGI

GO:0055046 "microgametogenesis" evidence=IGI

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2074728 PIRL9 "plant intracellular ras group-related LRR 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 211/369 (57%), Positives = 276/369 (74%)

Query:    99 AVVKLEEMHEDCERQFKEAEEMLDRVYDSV---SAE------LVDVNEDVVKILQEAESG 149
             +++KL+E+H   E+  KEAEE L R+Y+S    +AE       V+VNE+VV ILQ A + 
Sbjct:   139 SILKLDEVHASYEKLLKEAEERLVRIYESAEKNAAEDEENVAAVEVNEEVVGILQHASAN 198

Query:   150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQ 209
              V + VDL+ R+L+LLPEAFGR++GL+ LNLS N LE++PDSIAGL  L ELDVS+N L+
Sbjct:   199 PV-DRVDLSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLE 257

Query:   210 SLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
             +LPDSIGLL  LK+LNVS NKL +LP+SI RC SLV LD SFN L  LPTNIG  L+NLE
Sbjct:   258 TLPDSIGLLSKLKILNVSTNKLTSLPDSICRCGSLVILDVSFNRLTYLPTNIGPELVNLE 317

Query:   270 RLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL 329
             +L ++ NK+R+FP SI EMRSLK+LDAHFNEL+GLP +   LT LE LNLSSNF+DL +L
Sbjct:   318 KLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPDSFVLLTNLEYLNLSSNFSDLKDL 377

Query:   330 PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKE 389
             P + G+LI+L+ELDLSNNQI ALPDTF  L++LTKLN+DQNPLV+PP E+V +GVEAVK 
Sbjct:   378 PFSFGELISLQELDLSNNQIHALPDTFGTLDSLTKLNVDQNPLVVPPEEVVKEGVEAVKT 437

Query:   390 FMAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLGGGKTS 449
             +M +R   ++ E ++K + E  + +QA +GWL   +S L  +V+ VS+    YLG   + 
Sbjct:   438 YMGQRRISMLEEEEKKKMEE--EMEQANAGWLTRTTSKLKTYVADVSE----YLGSN-SP 490

Query:   450 ADPYLDQQL 458
              DPYL++QL
Sbjct:   491 RDPYLERQL 499

GO:0005634 "nucleus" evidence=ISM

GO:0009555 "pollen development" evidence=IGI

GO:0055046 "microgametogenesis" evidence=IGI

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 122/304 (40%), Positives = 178/304 (58%)

Query:   119 EMLDRVYDSV----SAELVDVNEDVVKILQEAESGVVVET-VDLADRQLKLLPEAFGRLR 173
             E L+ + DS+    S   +D++E+ + +L     G+   T +DL   ++  LPE+ G L 
Sbjct:   233 EQLEWLPDSLGKLSSLTSLDLSENHIVVLPNTIGGLSSLTKLDLHSNRIGQLPESIGELL 292

Query:   174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
              LV LNL  N L ++P + + L +LEELD+S N L  LP+SIG L++LK L+V  N +  
Sbjct:   293 NLVYLNLGSNQLSSLPSAFSRLVRLEELDLSCNNLPILPESIGSLVSLKKLDVETNDIEE 352

Query:   234 LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293
             +P SI  CSSL+EL A +N L  LP  IG  +  LE LS++ N +R  P ++  + SLK 
Sbjct:   353 IPYSIGGCSSLIELRADYNKLKALPEAIGK-ITTLEILSVRYNNIRQLPTTMSSLASLKE 411

Query:   294 LDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353
             LD  FNEL  +P ++   T L  LN+ +NF D+  LP +IG+L  L ELD+SNNQIR LP
Sbjct:   412 LDVSFNELESVPESLCFATTLVKLNIGNNFADMVSLPRSIGNLEMLEELDISNNQIRVLP 471

Query:   354 DTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSILEANKQ 413
             D+F  L  L      +NPL IPP +I  KG +AV ++M    + ++     KS++   K+
Sbjct:   472 DSFKMLTKLRVFRAQENPLHIPPRDIAEKGPQAVVQYM----NDLVETRNAKSLMVKPKK 527

Query:   414 QQAQ 417
                Q
Sbjct:   528 SWVQ 531

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2120825 PIRL8 "AT4G26050" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 120/294 (40%), Positives = 179/294 (60%)

Query:   152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQS 210
             ++T+DL+   L  L  +   L  +  L+LS N ++ +P+S +A +  L  LD+ SN L++
Sbjct:    59 IKTLDLSGMSLASLSASSINLASISKLDLSNNNIQKIPESLVARMLNLWALDLQSNQLKT 118

Query:   211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             LP+SIG L  LK LNVSGN L +LP++I  C SL EL+A+FN L  LP  IG+ L NL +
Sbjct:   119 LPNSIGCLSKLKFLNVSGNYLQSLPKTIEDCRSLEELNANFNELTRLPDAIGFELTNLTK 178

Query:   271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
             LS+  NKL   P S+  + SL+ LDA  N L  LP  +  L  L+VLN+S NF  LT LP
Sbjct:   179 LSVNSNKLVLLPNSVSYLTSLRVLDARLNRLSSLPEDLENLVNLQVLNVSQNFQHLTTLP 238

Query:   331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
              ++G LI+L ELD+S N I  LPD+   L  + KL+++ NPL+ PP E+V +G+EA+K++
Sbjct:   239 YSVGLLISLVELDVSYNGITVLPDSLGCLRRIQKLSVEGNPLISPPFEVVEQGLEALKQY 298

Query:   391 MAKRWDGIIAEAQQKSILEANKQQQAQSGWLAWGSSMLTNFVSGVSQSVGGYLG 444
             M+++    + E+ +K+     K++       +WG   L  +  G+S S G   G
Sbjct:   299 MSEK----MTESYKKT---PTKKK-------SWGIGKLVKY--GLSSSPGRSTG 336

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827587 PIRL5 "AT2G17440" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 122/300 (40%), Positives = 174/300 (58%)

Query:    93 EVDLYRAVVKLEEMHEDCERQFKEAEEMLDRVYDSVSAELVDVNEDVVKILQEAESGVVV 152
             EV   +A  +L   H    R   + E + D +    S   +D++E+ + +L     G++ 
Sbjct:   199 EVSAKKATQELNLQH----RLMDQLEWLPDSLGKLSSLVRLDLSENCIMVLPATIGGLIS 254

Query:   153 ET-VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
              T +DL   ++  LPE+ G L  LV+LNLS N L ++P S   L  LEELD+SSN L  L
Sbjct:   255 LTRLDLHSNRIGQLPESIGDLLNLVNLNLSGNQLSSLPSSFNRLIHLEELDLSSNSLSIL 314

Query:   212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             P+SIG L++LK L+V  N +  +P SI+ CSS+ EL A +N L  LP  +G  L  LE L
Sbjct:   315 PESIGSLVSLKKLDVETNNIEEIPHSISGCSSMEELRADYNRLKALPEAVGK-LSTLEIL 373

Query:   272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
             +++ N +R  P ++  M +LK LD  FNEL  +P ++     L  LN+ +NF +L  LP 
Sbjct:   374 TVRYNNIRQLPTTMSSMANLKELDVSFNELESVPESLCYAKTLVKLNIGNNFANLRSLPG 433

Query:   332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFM 391
              IG+L  L ELD+SNNQIR LP +F  L NL  L  +QNPL   P +I  KG +AV ++M
Sbjct:   434 LIGNLEKLEELDMSNNQIRFLPYSFKTLSNLRVLQTEQNPLEELPRDITEKGAQAVVQYM 493

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2123899 PIRL7 "plant intracellular ras group-related LRR 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 110/255 (43%), Positives = 165/255 (64%)

Query:   152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
             +E V+L+   L+ LP     L  +  L+LS N ++ +P+S+ A L  L  LD+ SN +++
Sbjct:    55 LEVVNLSGMALQSLPNPSLNLANICKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKA 114

Query:   211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             LP+SIG L  LK+LNVSGN L +LP++I  C SL EL+A+FN L+ LP NIG  L NL++
Sbjct:   115 LPNSIGCLSKLKILNVSGNFLVSLPQTIQNCRSLEELNANFNELIRLPDNIGLELTNLKK 174

Query:   271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
             L +  NKL + P +I  + SL+ LDA  N L  LP  +  L  LE+LN+S NF  L+ LP
Sbjct:   175 LCVNSNKLISLPATITCLTSLRVLDARLNCLMILPEDLENLINLEILNVSQNFQYLSALP 234

Query:   331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
              +IG L+NL ELD+S N+I  LP++   +  L KL+ + NPLV PP+E+V + + AV+E+
Sbjct:   235 SSIGLLLNLLELDISYNKITVLPESIGCMRRLRKLSAEGNPLVSPPIEVVEQSLHAVREY 294

Query:   391 MAKRWDGIIAEAQQK 405
             ++++ +G +     K
Sbjct:   295 LSQKMNGKLVNTAAK 309

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2047595 PIRL6 "AT2G19330" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 111/247 (44%), Positives = 162/247 (65%)

Query:   152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
             +E V+L+   L+ LP     L  +  L+LS N L+ +P+S+ A L  L  LDV SN +++
Sbjct:    62 LEVVNLSGMALESLPNPSLNLAQICKLDLSNNHLQTIPESLTARLLNLIALDVHSNQIKA 121

Query:   211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             LP+SIG L  LK LNVSGN L + P+SI  C SL EL+A+FN L+ LP +IG+ L NL +
Sbjct:   122 LPNSIGCLSKLKTLNVSGNFLVSFPKSIQHCRSLEELNANFNKLIRLPDSIGFELTNLRK 181

Query:   271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
             LSI  NKL + P SI  + SL+ LDA  N L  LP  +  L  LE+LN+S NF  L+ LP
Sbjct:   182 LSINSNKLISLPISITHLTSLRVLDARLNCLMILPDDLENLINLEILNVSQNFQYLSALP 241

Query:   331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
              +IG L+NL ELD+S N+I  LP++   +  L KL+++ NPLV PP+E++ + ++ V+E+
Sbjct:   242 SSIGLLMNLIELDVSYNKITVLPESIGCMRRLRKLSVEGNPLVSPPIEVMEQNLQVVREY 301

Query:   391 MAKRWDG 397
             + ++ +G
Sbjct:   302 LTQKMNG 308

GO:0008150 "biological_process" evidence=ND

GO:0042023 "DNA endoreduplication" evidence=RCA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 385 (140.6 bits), Expect = 6.2e-35, P = 6.2e-35
 Identities = 95/228 (41%), Positives = 129/228 (56%)

Query:   152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
             +  + L +  L LLP   G L  L  L    NLL  +P SI  L+KLEELD+  N L++L
Sbjct:   130 ITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEAL 189

Query:   212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             P  IG L +L+   V  N L +LP+SI+ C  L +LD S N ++ LP N+G  + NL  L
Sbjct:   190 PAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGR-MPNLTDL 248

Query:   272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
             +I +N++   P S  E++ L+ L A  N LH L   IGK   L  L L  NF  LT+LP+
Sbjct:   249 NISINEIIELPSSFGELKRLQMLKADRNSLHNLTSEIGKCQSLTELYLGQNF--LTDLPD 306

Query:   332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379
             TIGDL  L  L++  N +  +PDT    ++LT L+L QN L   PM I
Sbjct:   307 TIGDLRQLTTLNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTI 354

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-08
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
smart00370	24	smart00370, LRR, Leucine-rich repeats, outliers	7e-04
smart00369	24	smart00369, LRR_TYP, Leucine-rich repeats, typical	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 86.6 bits (214), Expect = 2e-18
 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           ++ +DL+D +++ LP     L  L +L+LS N L  +P  ++ L  L  LD+S N +  L
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL 201

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
           P  I LL  L+ L++S N +  L  S++   +L  L+ S N L  LP +IG  L NLE L
Sbjct: 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG-NLSNLETL 260

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +  N   +   S+  + +L+ LD   N L      I  L  L  L L+     LT    
Sbjct: 261 DL-SNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN---LLLTLKAL 316

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
            +     L   ++ +N   + P+    LE+L  L    N L  
Sbjct: 317 ELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDE 359

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 13/230 (5%)

Query: 152 VETVDLADRQL--KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQ 209
           ++T++L++ QL   +  + F     L  LNLS N           +  LE LD+S+N+L 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLS 153

Query: 210 -SLPDSIGLLLNLKVLNVSGNKL-NTLPESIARCSSLVELDASFNNLVC-LPTNIGYGLL 266
             +P+ IG   +LKVL++ GN L   +P S+   +SL  L  + N LV  +P  +G  + 
Sbjct: 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MK 212

Query: 267 NLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFN 324
           +L+ + +  N L    P  I  + SL +LD  +N L G +P ++G L  L+ L L    N
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ--N 270

Query: 325 DLT-ELPETIGDLINLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQNPL 372
            L+  +P +I  L  L  LDLS+N +   +P+   +L+NL  L+L  N  
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 68/195 (34%), Positives = 103/195 (52%), Gaps = 2/195 (1%)

Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
           LNLS N L  +P S++ L  L+ L  S        +++  LL L  L+++ N+L +    
Sbjct: 52  LNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE 111

Query: 238 IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297
           +   ++L  LD   NN+  +P  IG    NL+ L +  NK+ + P  +  + +LK LD  
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171

Query: 298 FNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFF 357
           FN+L  LP+ +  L+ L  L+LS   N +++LP  I  L  L ELDLSNN I  L  +  
Sbjct: 172 FNDLSDLPKLLSNLSNLNNLDLSG--NKISDLPPEIELLSALEELDLSNNSIIELLSSLS 229

Query: 358 RLENLTKLNLDQNPL 372
            L+NL+ L L  N L
Sbjct: 230 NLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 79.6 bits (196), Expect = 4e-16
 Identities = 73/255 (28%), Positives = 116/255 (45%), Gaps = 4/255 (1%)

Query: 123 RVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSR 182
            +  +                      V    ++L+   L LLP +  RL  L  L+ S 
Sbjct: 20  VLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSG 79

Query: 183 NLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR-C 241
                  +++  L  L  LD++ N L+S    +  L NL  L++  N +  +P  I    
Sbjct: 80  ISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLK 139

Query: 242 SSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNEL 301
           S+L ELD S N +  LP+ +   L NL+ L +  N L   P  +  + +L  LD   N++
Sbjct: 140 SNLKELDLSDNKIESLPSPLRN-LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 302 HGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLEN 361
             LP  I  L+ LE L+LS+N   + EL  ++ +L NL  L+LSNN++  LP++   L N
Sbjct: 199 SDLPPEIELLSALEELDLSNN--SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 362 LTKLNLDQNPLVIPP 376
           L  L+L  N +    
Sbjct: 257 LETLDLSNNQISSIS 271

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 68/215 (31%), Positives = 109/215 (50%), Gaps = 14/215 (6%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLEELDV-SSNLLQSLPDSIGLLLNLK 222
           +P +   L+ L+SL+LS N L   +P+ +  LQ LE L + S+N    +P ++  L  L+
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 223 VLNVSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLL---NLERLSIKLNKL 278
           VL +  NK +  +P+++ + ++L  LD S NNL      I  GL    NL +L +  N L
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT---GEIPEGLCSSGNLFKLILFSNSL 392

Query: 279 RT-FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDL 336
               P S+   RSL+ +    N   G LP    KL  +  L++S+N N    +     D+
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDM 451

Query: 337 INLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQN 370
            +L+ L L+ N+    LPD  F  + L  L+L +N
Sbjct: 452 PSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRN 485

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 71.3 bits (174), Expect = 4e-13
 Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 19/202 (9%)

Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           + +L L  N L+++P+++ G   ++ L  +SN L S+P +  L   ++ + +S N++  L
Sbjct: 201 ITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITEL 256

Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           PE +   S+L  LD   N + CLP N+   L     LS+  N +RT P  +     + +L
Sbjct: 257 PERLP--SALQSLDLFHNKISCLPENLPEEL---RYLSVYDNSIRTLPAHLPS--GITHL 309

Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD 354
           +   N L  LP  +     L+ L   +  N LT LP ++     L+ LD+S NQI  LP+
Sbjct: 310 NVQSNSLTALPETLP--PGLKTL--EAGENALTSLPASLPP--ELQVLDVSKNQITVLPE 363

Query: 355 TFFRLENLTKLNLDQNPLVIPP 376
           T      +T L++ +N L   P
Sbjct: 364 TL--PPTITTLDVSRNALTNLP 383

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 64/186 (34%), Positives = 87/186 (46%), Gaps = 32/186 (17%)

Query: 221 LKVLNVSGNKLN-TLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
           ++ +N+S N+L+  +P+ I    SSL  L+ S NN        G  + NLE L +  N L
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGS-IPNLETLDLSNNML 152

Query: 279 R-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSN-------------- 322
               P  I    SLK LD   N L G +P ++  LT LE L L+SN              
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 323 --------FNDLT-ELPETIGDLINLRELDLS-NNQIRALPDTFFRLENLTKLNLDQNPL 372
                   +N+L+ E+P  IG L +L  LDL  NN    +P +   L+NL  L L QN L
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 373 V--IPP 376
              IPP
Sbjct: 273 SGPIPP 278

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 31/233 (13%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           + T++++  QL  LP       GL+ L++  N L  +P   +GL KL    +  N L SL
Sbjct: 244 LRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLW---IFGNQLTSL 297

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
           P    L   L+ L+VS N+L +LP   A  S L +L A  N L  LPT        L+ L
Sbjct: 298 P---VLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLPTLPS----GLQEL 347

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI-------GKLTRLEVL-----NL 319
           S+  N+L + P    E+  L   +     L  LP  +        +LT L VL      L
Sbjct: 348 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKEL 407

Query: 320 SSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
             + N LT LP     L++L    +  NQ+  LP++   L + T +NL+ NPL
Sbjct: 408 MVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNPL 457

Length = 788

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 151 VVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLL 208
            ++ + L ++ L+  +P    +LR L S+NLS N +   +P S+  +  LE LD+S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 209 Q-SLPDSIGLLLNLKVLNVSGNKL 231
             S+P+S+G L +L++LN++GN L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 28/149 (18%)

Query: 178 LNLSRN-LLEAMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNVSGNKLN-TL 234
           L+L+RN     +PDS  G ++LE LD+S N    ++P  +G L  L  L +S NKL+  +
Sbjct: 457 LSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P+ ++ C  LV LD S N L                           P S  EM  L  L
Sbjct: 516 PDELSSCKKLVSLDLSHNQLS-----------------------GQIPASFSEMPVLSQL 552

Query: 295 DAHFNELHG-LPRAIGKLTRLEVLNLSSN 322
           D   N+L G +P+ +G +  L  +N+S N
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 37/252 (14%)

Query: 154 TVDLADRQLK-LLPEAFGRLRGLVSLNL-SRNLLEAMPDSIAGLQKLEELDVSSNLLQ-S 210
           ++DL+D  L   +PE   +L+ L  L+L S N    +P ++  L +L+ L + SN     
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 211 LPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASFNNLVC-LPTNIGYGLLNL 268
           +P ++G   NL VL++S N L   +PE +    +L +L    N+L   +P ++G    +L
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSL 406

Query: 269 ERLSIKLNKLRTFPPS-------------------------ICEMRSLKYLDAHFNELHG 303
            R+ ++ N      PS                           +M SL+ L    N+  G
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Query: 304 -LPRAIGKLTRLEVLNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRA-LPDTFFRLE 360
            LP + G   RLE L+LS N F+    +P  +G L  L +L LS N++   +PD     +
Sbjct: 467 GLPDSFGS-KRLENLDLSRNQFSGA--VPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 361 NLTKLNLDQNPL 372
            L  L+L  N L
Sbjct: 524 KLVSLDLSHNQL 535

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 30/176 (17%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           ++ ++L+  ++  LPE       L SL+L  N +  +P+++   ++L  L V  N +++L
Sbjct: 243 IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL 298

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
           P    L   +  LNV  N L  LPE++     L  L+A  N L  LP ++   L  L   
Sbjct: 299 PAH--LPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPPELQVL--- 351

Query: 272 SIKLNKL----RTFPPSICEM---------------RSLKYLDAHFNELHGLPRAI 308
            +  N++     T PP+I  +                +L+ + A  N L  LP ++
Sbjct: 352 DVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 11/139 (7%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           +  + + D  ++ LP       G+  LN+  N L A+P+++     L+ L+   N L SL
Sbjct: 285 LRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSL 340

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
           P S  L   L+VL+VS N++  LPE++    ++  LD S N L  LP N+   L  ++  
Sbjct: 341 PAS--LPPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPAALQIMQ-- 394

Query: 272 SIKLNKLRTFPPSICEMRS 290
               N L   P S+   R 
Sbjct: 395 -ASRNNLVRLPESLPHFRG 412

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 313 RLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQN 370
            L+ L+LS+N   LT +P      L NL+ LDLS N + ++ P+ F  L +L  L+L  N
Sbjct: 1   NLKSLDLSNN--RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 371 PL 372
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 72/273 (26%), Positives = 106/273 (38%), Gaps = 85/273 (31%)

Query: 162 LKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDV-SSNLLQSLPDSIGLLLN 220
           L+ +P  F R   LV L +  + LE + D +  L  L  +D+  S  L+ +PD + +  N
Sbjct: 601 LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATN 658

Query: 221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN---- 276
           L+ L +S             CSSLVEL +S   L  L         NLE L   +N    
Sbjct: 659 LETLKLSD------------CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706

Query: 277 ---------KLRTFP-------------------PS-----------ICEMRSLKYLD-- 295
                    +L++FP                   PS           +CEM+S K  +  
Sbjct: 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERV 766

Query: 296 -------------------AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDL 336
                              +    L  LP +I  L +LE L +  N  +L  LP  I +L
Sbjct: 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI-ENCINLETLPTGI-NL 824

Query: 337 INLRELDLSN-NQIRALPDTFFRLENLTKLNLD 368
            +L  LDLS  +++R  PD      N++ LNL 
Sbjct: 825 ESLESLDLSGCSRLRTFPDIS---TNISDLNLS 854

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 290 SLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNN 347
           +LK LD   N L  +P  A   L  L+VL+LS N  +LT + PE    L +LR LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN--NLTSISPEAFSGLPSLRSLDLSGN 58

Query: 348 QI 349
            +
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 278 LRTFPPS-ICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSN-FNDLTELPETIG 334
           LR F P+ I ++R L+ ++   N + G +P ++G +T LEVL+LS N FN    +PE++G
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLG 487

Query: 335 DLINLRELDLSNN 347
            L +LR L+L+ N
Sbjct: 488 QLTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 174 GLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKL 231
            L SL+LS N L  +PD    GL  L+ LD+S N L S+ P++   L +L+ L++SGN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENL 362
           +P  I KL  L+ +NLS N      +P ++G + +L  LDLS N    ++P++  +L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 363 TKLNLDQNPL 372
             LNL+ N L
Sbjct: 493 RILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 152 VETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLL 208
           ++++DL++ +L ++P  AF  L  L  L+LS N L ++ P++ +GL  L  LD+S N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 6/81 (7%)

Query: 257 LPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRL 314
           +P +I   L +L+ +++  N +R   PPS+  + SL+ LD  +N  +G  P ++G+LT L
Sbjct: 434 IPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 315 EVLNLSSNFNDLT-ELPETIG 334
            +LNL+ N   L+  +P  +G
Sbjct: 493 RILNLNGNS--LSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 23/69 (33%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 188 MPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLV 245
           +P+ I+ L+ L+ +++S N ++ ++P S+G + +L+VL++S N  N ++PES+ + +SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 246 ELDASFNNL 254
            L+ + N+L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 8/88 (9%)

Query: 267 NLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDL 326
           N   L +K+  L T P  I E  +   LD   NEL  LP  +    +  +  L +N N L
Sbjct: 179 NKTELRLKILGLTTIPACIPEQITTLILDN--NELKSLPENL----QGNIKTLYANSNQL 232

Query: 327 TELPETIGDLINLRELDLSNNQIRALPD 354
           T +P T+ D I  +E++LS N+I  LP+
Sbjct: 233 TSIPATLPDTI--QEMELSINRITELPE 258

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNEL 301
           +L  LD S N L  +P     GL NL+ L +  N L +  P +   + SL+ LD   N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353
           T LE L+LS+N   +T+LP  + +L NL  LDLS N+I  L 
Sbjct: 1   TNLETLDLSNN--QITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 338 NLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           NL  LDLSNNQI  LP     L NL  L+L  N +
Sbjct: 2   NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 338 NLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPL-VIPP 376
           NL+ LDLSNN++  +PD  F  L NL  L+L  N L  I P
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP 41

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 36/235 (15%)

Query: 158 ADRQLKLLPEAFGRLRGLVSLNLSRNLL-----EAMPDSIAGLQKLEELDVSSNLLQSLP 212
           A   L  L         L  L L  N L     +A+  ++     L+EL +S N    +P
Sbjct: 15  ATELLPKLLC-------LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIP 67

Query: 213 DSIGLLL-NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             +  LL  L      G  L  L   ++  +   +      +L+    +     L L   
Sbjct: 68  RGLQSLLQGLT----KGCGLQEL--DLSDNALGPDGCGVLESLL---RSSSLQELKLNNN 118

Query: 272 SIKLNKLRTFPPSICEMR-SLKYLDAHFNEL-HGLPRAIGKL----TRLEVLNLSSN-FN 324
            +    LR     + ++  +L+ L    N L      A+ K       L+ LNL++N   
Sbjct: 119 GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178

Query: 325 D--LTELPETIGDLINLRELDLSNNQIR-----ALPDTFFRLENLTKLNLDQNPL 372
           D  +  L E +    NL  LDL+NN +      AL +T   L++L  LNL  N L
Sbjct: 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 336 LINLRELDLSNNQIRALPDTFFR 358
           L NLRELDLSNNQ+ +LP   F+
Sbjct: 1   LPNLRELDLSNNQLSSLPPGAFQ 23

Length = 24

>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated) subfamily

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 336 LINLRELDLSNNQIRALPDTFFR 358
           L NLRELDLSNNQ+ +LP   F+
Sbjct: 1   LPNLRELDLSNNQLSSLPPGAFQ 23

Length = 24

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 220 NLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
           NLK L++S N+L  +P+       +L  LD S NNL  +      GL +L  L +  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 267 NLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSN 322
           NL+ L +  N+L   P    + + +LK LD   N L  + P A   L  L  L+LS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 53/248 (21%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLL 218
            R L+ L +   +  GL  L+LS N L   PD    L+         +LL+S        
Sbjct: 67  PRGLQSLLQGLTKGCGLQELDLSDNALG--PDGCGVLE---------SLLRSSS------ 109

Query: 219 LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLN---LERLSIKL 275
             L+ L ++ N L      +     L +L  +   LV      G   L     E L+  L
Sbjct: 110 --LQELKLNNNGLGDRGLRLL-AKGLKDLPPALEKLVL-----GRNRLEGASCEALAKAL 161

Query: 276 NKLRTFPPSICEMRSLKYLDAHFNE--LHGLPRAIGKLTRLEVLNLSSN-FNDL--TELP 330
                   +  +++ L   +    +  +  L   +     LEVL+L++N   D   + L 
Sbjct: 162 -------RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214

Query: 331 ETIGDLINLRELDLSNNQIRALP----DTFFRLEN--LTKLNLDQNPLVIPPMEIVNKGV 384
           ET+  L +L  L+L +N +         +     N  L  L+L  N       +I + G 
Sbjct: 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-------DITDDGA 267

Query: 385 EAVKEFMA 392
           + + E +A
Sbjct: 268 KDLAEVLA 275

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 196 QKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE 236
             LE LD+S+N +  LP  +  L NL+ L++SGNK+  L  
Sbjct: 1   TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.52
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.49
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.45
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.34
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.91
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.88
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
PLN03150	623	hypothetical protein; Provisional	98.65
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
PLN03150	623	hypothetical protein; Provisional	98.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.56
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.4
PRK15386	426	type III secretion protein GogB; Provisional	98.38
PRK15386	426	type III secretion protein GogB; Provisional	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.34
KOG4308	478	consensus LRR-containing protein [Function unknown	97.28
KOG4341	483	consensus F-box protein containing LRR [General fu	97.2
KOG4308	478	consensus LRR-containing protein [Function unknown	96.86
KOG4341	483	consensus F-box protein containing LRR [General fu	96.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.66
smart00370	26	LRR Leucine-rich repeats, outliers.	90.66
smart00370	26	LRR Leucine-rich repeats, outliers.	89.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.27
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.41
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.96
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.5

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=9.8e-28  Score=235.55  Aligned_cols=229  Identities=34%  Similarity=0.459  Sum_probs=158.1

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l  226 (458)
                      .++.|+.|||++|.++++|..+..-+++-+|+|++|+|..||.. +.++..|-.||||+|++..+|+.+..+..|++|.|
T Consensus       101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL  180 (1255)
T ss_pred             ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence            34778888888888888888777777888888888888877754 56777777778888777777777777777777777


Q ss_pred             eCCCCC--------------------------CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc
Q 012694          227 SGNKLN--------------------------TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT  280 (458)
Q Consensus       227 ~~n~l~--------------------------~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  280 (458)
                      ++|.+.                          .+|.++..+.+|..+|++.|++..+|..++ .+++|+.|+|++|.|+.
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly-~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY-KLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh-hhhhhheeccCcCceee
Confidence            776542                          344455566667777777777777766555 67777777777777776


Q ss_pred             CCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCC
Q 012694          281 FPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE  360 (458)
Q Consensus       281 l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~  360 (458)
                      +....+.-.+|++|+++.|+++.+|.++.++++|+.|.+.+|......+|..++.+.+|+.+..++|.+.-+|+.+..|.
T Consensus       260 L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~  339 (1255)
T KOG0444|consen  260 LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCV  339 (1255)
T ss_pred             eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhH
Confidence            65555555666777777777777777777777777777766655556666666666666666666666666666666666


Q ss_pred             CCcEEECcCCCCCCCcH
Q 012694          361 NLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       361 ~L~~L~L~~n~i~~~~~  377 (458)
                      +|+.|.|+.|.+...|.
T Consensus       340 kL~kL~L~~NrLiTLPe  356 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLITLPE  356 (1255)
T ss_pred             HHHHhcccccceeechh
Confidence            66666666666555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=3.6e-27  Score=221.10  Aligned_cols=111  Identities=34%  Similarity=0.596  Sum_probs=88.1

Q ss_pred             cccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC---------------------CCCCCccchh-hcCCCCCCE
Q 012694          284 SICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN---------------------FNDLTELPET-IGDLINLRE  341 (458)
Q Consensus       284 ~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n---------------------~~~~~~l~~~-l~~l~~L~~  341 (458)
                      .++.+++|..|++++|-+.++|..++.+..|+.|+++.|                     .+.++.+++. +.++.+|..
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             HHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            344455666666666666666666666666666666665                     1355666555 788999999


Q ss_pred             EeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhh
Q 012694          342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKR  394 (458)
Q Consensus       342 L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~  394 (458)
                      |||.+|.|..+|+.+++|.+|++|+++||+|..++..++.+|..++.+|.+.+
T Consensus       510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrdr  562 (565)
T KOG0472|consen  510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQILMKGTAAILSYLRDR  562 (565)
T ss_pred             eccCCCchhhCChhhccccceeEEEecCCccCCCHHHHhccChHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999987654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=3.6e-27  Score=230.19  Aligned_cols=338  Identities=21%  Similarity=0.282  Sum_probs=204.4

Q ss_pred             hhhcCCCCCChHHHHHhhccccccchhhhhhhCCCCChhHHHHHHHHHHhcccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 012694           34 LITKYPHLTNSTVISSLTQGVPVQITQTRLLLGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQ  113 (458)
Q Consensus        34 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~p~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  113 (458)
                      .+.++|+|....+..+....+| ...      +....++.++...+.+.++..        .-.+.+..++.++++-+.+
T Consensus        97 ~f~nl~nLq~v~l~~N~Lt~IP-~f~------~~sghl~~L~L~~N~I~sv~s--------e~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   97 FFYNLPNLQEVNLNKNELTRIP-RFG------HESGHLEKLDLRHNLISSVTS--------EELSALPALRSLDLSRNLI  161 (873)
T ss_pred             HHhcCCcceeeeeccchhhhcc-ccc------ccccceeEEeeeccccccccH--------HHHHhHhhhhhhhhhhchh
Confidence            6678888888887777777666 222      222334445555555544443        2344444555555554432


Q ss_pred             HHHHHHHHHHHh-----hcccccccccChhHHHHHHhccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCc
Q 012694          114 FKEAEEMLDRVY-----DSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEA  187 (458)
Q Consensus       114 ~~~~~~~l~~~~-----~~~~~~l~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~  187 (458)
                      .......+.+-.     .....++..+....++      ...+|.+|.|+.|+|+.+|. .|.++++|+.|+|..|.|..
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFD------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hcccCCCCCCCCCceEEeecccccccccccccc------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            211111000000     0000011122221111      22356666666666666654 55556666666666666654


Q ss_pred             c-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhcc
Q 012694          188 M-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYG  264 (458)
Q Consensus       188 l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~  264 (458)
                      + .-.|.++++|+.|.+..|.|..+.+ .|..+.++++|+|..|+++.+. ..+.++++|+.|++++|.|..+.......
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            4 2346666666666666666666533 4556666777777777666553 34556777777777777777666555556


Q ss_pred             CCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCC--CCccchhhcCCCCCC
Q 012694          265 LLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFND--LTELPETIGDLINLR  340 (458)
Q Consensus       265 l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~--~~~l~~~l~~l~~L~  340 (458)
                      +++|+.|+|+.|.|+.+++ ++..+..|++|+|+.|.+..+.+ .|..+++|++|||++|...  +.+-...+.+++.|+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            6777777777777776653 46666777777777777776543 5667788888888887221  112223467799999


Q ss_pred             EEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhh
Q 012694          341 ELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKR  394 (458)
Q Consensus       341 ~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~  394 (458)
                      .|++.+|+|..+| .+|.++++|++|+|.+|.|..+-+..+...  .++++..+.
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~nS  448 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVMNS  448 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhhcc
Confidence            9999999999997 588999999999999999988777666554  566665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=1.7e-27  Score=223.37  Aligned_cols=241  Identities=38%  Similarity=0.548  Sum_probs=216.0

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      ...+..++.++|.+..+|+.+..+..|+.|+++.|.+..+++.++.+..|+.|+..+|++.++|.++.++.+|..+++.+
T Consensus        90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~  169 (565)
T KOG0472|consen   90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG  169 (565)
T ss_pred             HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc
Confidence            35677788888888888888888888888888888888888888888888888888899988888888888899999999


Q ss_pred             CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccc-
Q 012694          229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRA-  307 (458)
Q Consensus       229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~-  307 (458)
                      |+++.+|+..-+++.|++||+..|-++.+|..++ .+.+|+.|++..|++..+| .|.++..|++|.++.|.|+-+|.. 
T Consensus       170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~  247 (565)
T KOG0472|consen  170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELG-GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEH  247 (565)
T ss_pred             cchhhCCHHHHHHHHHHhcccchhhhhcCChhhc-chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence            9998888777778999999999999999998887 7889999999999999998 788899999999999999998864 


Q ss_pred             ccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHH
Q 012694          308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAV  387 (458)
Q Consensus       308 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l  387 (458)
                      ...++++.+||+..|  .+.++|+.+.-+.+|+.||+++|.|+.+|..++++ +|+.|-+.||++..+..+++.+|..++
T Consensus       248 ~~~L~~l~vLDLRdN--klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDN--KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV  324 (565)
T ss_pred             hcccccceeeecccc--ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence            458999999999998  88999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHhh
Q 012694          388 KEFMAKR  394 (458)
Q Consensus       388 ~~~~~~~  394 (458)
                      -+|.+..
T Consensus       325 LKyLrs~  331 (565)
T KOG0472|consen  325 LKYLRSK  331 (565)
T ss_pred             HHHHHHh
Confidence            9998873

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=4e-26  Score=224.34  Aligned_cols=261  Identities=30%  Similarity=0.360  Sum_probs=214.2

Q ss_pred             HhccCCCceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchh-hcCCCC
Q 012694          144 QEAESGVVVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDS-IGLLLN  220 (458)
Q Consensus       144 ~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~  220 (458)
                      .++...+.|+.+.+.+|.++  .+|..+-++..|..|+|++|++...|..+..-+++-+|+||+|+|..+|.. +-++..
T Consensus        72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD  151 (1255)
T ss_pred             hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence            34445688999999999987  788889999999999999999999999999999999999999999999875 478999


Q ss_pred             ccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc--cCCccccCCCCCcEEEccc
Q 012694          221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR--TFPPSICEMRSLKYLDAHF  298 (458)
Q Consensus       221 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~~  298 (458)
                      |-.|+|++|++..+|+.+..+..|++|++++|.+..+.......+++|+.|.+++.+-+  .+|.++..+.+|..+|++.
T Consensus       152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            99999999999999999999999999999999877554444446778888888887655  7888888889999999999


Q ss_pred             CCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          299 NELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       299 n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      |.+..+|+++.++++|+.|+||+|  .++++....+.-.+|+.|++|.|+++.+|.++.++++|+.|++.+|+++....-
T Consensus       232 N~Lp~vPecly~l~~LrrLNLS~N--~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  232 NNLPIVPECLYKLRNLRRLNLSGN--KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             cCCCcchHHHhhhhhhheeccCcC--ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc
Confidence            999999999999999999999997  677776666777888999999999999998888999999999988887654332


Q ss_pred             HHhhcHHHHHHHHHhh-hhchhHHHHHHH
Q 012694          379 IVNKGVEAVKEFMAKR-WDGIIAEAQQKS  406 (458)
Q Consensus       379 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~  406 (458)
                      ..-..+..+..|++.+ ....+|+...+.
T Consensus       310 SGIGKL~~Levf~aanN~LElVPEglcRC  338 (1255)
T KOG0444|consen  310 SGIGKLIQLEVFHAANNKLELVPEGLCRC  338 (1255)
T ss_pred             cchhhhhhhHHHHhhccccccCchhhhhh
Confidence            2223345556665544 334555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=9.7e-26  Score=220.24  Aligned_cols=308  Identities=26%  Similarity=0.368  Sum_probs=228.4

Q ss_pred             hCCCCChhHHHHHHHHHHhcccccCCCchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccccccccChhHHH
Q 012694           65 LGTRPDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQF---KEAEEMLDRVYDSVSAELVDVNEDVVK  141 (458)
Q Consensus        65 l~~~p~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~  141 (458)
                      +-..|..+.|..-++.++.++.-.....         .++.+.+..+.+.   .+....+..+..      .++....+.
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sg---------hl~~L~L~~N~I~sv~se~L~~l~alrs------lDLSrN~is  162 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESG---------HLEKLDLRHNLISSVTSEELSALPALRS------LDLSRNLIS  162 (873)
T ss_pred             HhcCCcceeeeeccchhhhccccccccc---------ceeEEeeeccccccccHHHHHhHhhhhh------hhhhhchhh
Confidence            3456889999999999999986332222         2233333332221   222222222211      111222222


Q ss_pred             HHHh--ccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCC-chhhc
Q 012694          142 ILQE--AESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIG  216 (458)
Q Consensus       142 ~l~~--~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~  216 (458)
                      .++.  +....+++.|+|++|+|+.+.. .|..+.+|.+|.|++|.|+.+| ..|+++++|+.|+|..|+|..+ .-.|.
T Consensus       163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence            2221  1234579999999999997754 7888889999999999999887 4588899999999999988865 34688


Q ss_pred             CCCCccEEEeeCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEE
Q 012694          217 LLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYL  294 (458)
Q Consensus       217 ~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L  294 (458)
                      ++++|+.|.+..|++..+.+ .|..|.++++|++..|++..+..+..++++.|+.|+++.|.|..+ ++++..+++|+.|
T Consensus       243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L  322 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL  322 (873)
T ss_pred             CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence            89999999999999888754 567789999999999999999888888999999999999999866 4678888899999


Q ss_pred             EcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCC-CC---chhhhCCCCCcEEECc
Q 012694          295 DAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIR-AL---PDTFFRLENLTKLNLD  368 (458)
Q Consensus       295 ~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~-~l---~~~l~~l~~L~~L~L~  368 (458)
                      +|++|+|+.++ ..|..+..|++|+|+.|  .+..+.+ .|.++++|++|||++|.|+ .+   ...+..+++|+.|++.
T Consensus       323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~N--si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  323 DLSSNRITRLDEGSFRVLSQLEELNLSHN--SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             eccccccccCChhHHHHHHHhhhhccccc--chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            99999999986 47888899999999998  5666644 4678899999999999987 22   3567789999999999


Q ss_pred             CCCCCCCcHHHHhhcHHHHHHH
Q 012694          369 QNPLVIPPMEIVNKGVEAVKEF  390 (458)
Q Consensus       369 ~n~i~~~~~~~~~~~~~~l~~~  390 (458)
                      ||++..++...+. |++.+..+
T Consensus       401 gNqlk~I~krAfs-gl~~LE~L  421 (873)
T KOG4194|consen  401 GNQLKSIPKRAFS-GLEALEHL  421 (873)
T ss_pred             Cceeeecchhhhc-cCccccee
Confidence            9999988776553 44554444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=1.7e-22  Score=225.46  Aligned_cols=225  Identities=33%  Similarity=0.451  Sum_probs=148.2

Q ss_pred             CCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~  225 (458)
                      .++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            456777777777665 55666777777777777777665 55666777777777777777665 3566677777777777


Q ss_pred             eeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCCC
Q 012694          226 VSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       226 l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~  303 (458)
                      +++|.++ .+|..++++++|++|++++|.++......+.++++|+.|++++|.+. .+|..+.++++|++|++++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            7777666 56666777777777777777666433333446677777777777665 456666667777777777776664


Q ss_pred             -ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCC
Q 012694          304 -LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       304 -l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~  374 (458)
                       +|..+.++++|+.|++++|.. ...+|..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|++..
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCcc-CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence             555666667777777776622 2345556666667777777777666 456666666667777776666654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.89  E-value=2.7e-22  Score=223.86  Aligned_cols=225  Identities=29%  Similarity=0.440  Sum_probs=166.7

Q ss_pred             CCCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEE
Q 012694          148 SGVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVL  224 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L  224 (458)
                      .+++|++|++++|.++ .+|.  ..+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            3456666666666665 3332  34566777777777665 55667788888888888888765 567777888888888


Q ss_pred             EeeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCC
Q 012694          225 NVSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       225 ~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~  302 (458)
                      ++++|.++ .+|..+.++++|++|++++|.+.......+.++++|++|++++|.+. .+|..+.++++|++|++++|.+.
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            88888776 56777888888888888888877433333447888888888888776 66777888888888888888876


Q ss_pred             C-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694          303 G-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       303 ~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      + +|..+..+++|++|++++|.. ...+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCee-ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence            5 677778888888888888732 2456777888888888888888877 4577788888888888888888754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=3e-20  Score=196.73  Aligned_cols=208  Identities=27%  Similarity=0.426  Sum_probs=120.0

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      +.++.|++++|.++.+|..+.  .+|++|++++|+++.+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence            457788888888887776543  478888888887777776543  367777777777777766553  46777777777


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhc------------------cCCCCCEEeccCCcCccCCccccCCCCC
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGY------------------GLLNLERLSIKLNKLRTFPPSICEMRSL  291 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~------------------~l~~L~~L~L~~n~l~~l~~~l~~l~~L  291 (458)
                      +++.+|..+.  ++|+.|++++|+++.+|..+..                  ..++|+.|++++|.++.+|..+.  ++|
T Consensus       273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL  348 (754)
T PRK15370        273 KISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PEL  348 (754)
T ss_pred             ccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--Ccc
Confidence            7776665443  4677777777776665543220                  11234444444444444443332  345


Q ss_pred             cEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh----hCCCCCcEEEC
Q 012694          292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF----FRLENLTKLNL  367 (458)
Q Consensus       292 ~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~L  367 (458)
                      +.|++++|+++.+|..+.  ++|++|+|++|  .+..+|..+.  ..|+.|++++|+|+.+|..+    ..++++..|++
T Consensus       349 ~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N--~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L  422 (754)
T PRK15370        349 QVLDVSKNQITVLPETLP--PTITTLDVSRN--ALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIV  422 (754)
T ss_pred             cEEECCCCCCCcCChhhc--CCcCEEECCCC--cCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEe
Confidence            555555555555444331  34555555554  3444544432  24555555555555554322    22355666666


Q ss_pred             cCCCCC
Q 012694          368 DQNPLV  373 (458)
Q Consensus       368 ~~n~i~  373 (458)
                      .+|++.
T Consensus       423 ~~Npls  428 (754)
T PRK15370        423 EYNPFS  428 (754)
T ss_pred             eCCCcc
Confidence            666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.4e-19  Score=191.69  Aligned_cols=209  Identities=30%  Similarity=0.478  Sum_probs=174.0

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      .+...|+++++.++.+|..+.  ++|+.|++++|+|+.+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            457899999999999987664  589999999999999987654  589999999999999987664  47999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      .+..+|..+.  .+|+.|++++|+++.+|..+.   ++|+.|++++|.++.+|..+.  ++|+.|++++|.++.+|..+.
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~  324 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP  324 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc
Confidence            9999988764  589999999999999887653   589999999999999886553  478889999999988876443


Q ss_pred             CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694          310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI  379 (458)
Q Consensus       310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~  379 (458)
                        ++|+.|++++|  .+..+|..+.  ++|+.|++++|+|+.+|..+.  ++|++|+|++|+++..|..+
T Consensus       325 --~sL~~L~Ls~N--~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        325 --PGLKTLEAGEN--ALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL  386 (754)
T ss_pred             --ccceeccccCC--ccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH
Confidence              68888998887  5667776553  688899999998888876553  68888999999888877654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=5.1e-22  Score=166.62  Aligned_cols=204  Identities=36%  Similarity=0.557  Sum_probs=166.2

Q ss_pred             hCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEE
Q 012694          169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELD  248 (458)
Q Consensus       169 ~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~  248 (458)
                      +-.+.+++.|.+++|+++.+|+.+..+.+|+.|++++|+|+++|.+++.+++|+.|+++-|++..+|.+|+.++.|+.||
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             cCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCc
Q 012694          249 ASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE  328 (458)
Q Consensus       249 l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~  328 (458)
                      +.+|++..                      ..+|..+..++.|+.|.+++|.++-+|..++++++|+.|.+..|  .+.+
T Consensus       109 ltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dll~  164 (264)
T KOG0617|consen  109 LTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DLLS  164 (264)
T ss_pred             cccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--chhh
Confidence            88887651                      13344555666777777777777777877888888888888887  6778


Q ss_pred             cchhhcCCCCCCEEeccCCCCCCCchhhhCCC---CCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhhhh
Q 012694          329 LPETIGDLINLRELDLSNNQIRALPDTFFRLE---NLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWD  396 (458)
Q Consensus       329 l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~---~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~~~  396 (458)
                      +|..++.++.|++|++.+|+++.+|+.++++.   +-+...+.+|++..+..+.+..|...+..|....-.
T Consensus       165 lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirtetY  235 (264)
T KOG0617|consen  165 LPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRTETY  235 (264)
T ss_pred             CcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhhhhh
Confidence            88888888888888888898888887776643   345667788888888788888888888777665433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=1.9e-19  Score=189.70  Aligned_cols=208  Identities=34%  Similarity=0.389  Sum_probs=127.7

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcC-----------------CcccceeeeecCCCCCCch
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAG-----------------LQKLEELDVSSNLLQSLPD  213 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~-----------------l~~L~~L~L~~n~l~~l~~  213 (458)
                      +|+.|++.+|.++.+|..   .++|++|++++|+|+.+|....+                 ..+|+.|++++|+++.+|.
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~  299 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV  299 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc
Confidence            466777777777766642   35667777777766666532110                 1223344444444444433


Q ss_pred             hhcCCCCccEEEeeCCCCCCCchhhcC-----------------CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC
Q 012694          214 SIGLLLNLKVLNVSGNKLNTLPESIAR-----------------CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN  276 (458)
Q Consensus       214 ~l~~l~~L~~L~l~~n~l~~l~~~l~~-----------------l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n  276 (458)
                         .+++|+.|++++|+++.+|.....                 ..+|++|++++|+++.+|..    ..+|+.|++++|
T Consensus       300 ---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N  372 (788)
T PRK15387        300 ---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNN  372 (788)
T ss_pred             ---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC----Ccccceehhhcc
Confidence               124566666666666554431110                 02344555555555544431    234445555555


Q ss_pred             cCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh
Q 012694          277 KLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF  356 (458)
Q Consensus       277 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l  356 (458)
                      .++.+|..   ..+|+.|++++|.++.+|..   .++|+.|++++|  .+..+|..   ..+|+.|++++|+|+.+|..+
T Consensus       373 ~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N--~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl  441 (788)
T PRK15387        373 RLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN--RLTSLPML---PSGLLSLSVYRNQLTRLPESL  441 (788)
T ss_pred             ccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCC--cCCCCCcc---hhhhhhhhhccCcccccChHH
Confidence            55544432   24677888888888877653   357888888887  56677753   346888999999999999999


Q ss_pred             hCCCCCcEEECcCCCCCCCcHHH
Q 012694          357 FRLENLTKLNLDQNPLVIPPMEI  379 (458)
Q Consensus       357 ~~l~~L~~L~L~~n~i~~~~~~~  379 (458)
                      .++++|+.|+|++|++++..+..
T Consensus       442 ~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhccCCCeEECCCCCCCchHHHH
Confidence            99999999999999998765443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=1.5e-21  Score=163.78  Aligned_cols=171  Identities=32%  Similarity=0.467  Sum_probs=153.3

Q ss_pred             HHHHHhccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCC
Q 012694          140 VKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL  219 (458)
Q Consensus       140 ~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~  219 (458)
                      +.-+..+..+.+++.|.+++|+++.+|..+..+.+|+.|++.+|+|+.+|.+++.+++|+.|+++-|++..+|.+|+.++
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence            34455666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcc
Q 012694          220 NLKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH  297 (458)
Q Consensus       220 ~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  297 (458)
                      .|+.||+.+|++.  .+|..|..++.|+-|++++|.++.+|..++ ++++|+.|.+..|.+-++|..++.++.|+.|.+.
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg-~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG-KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh-hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            9999999999988  688888888899999999999998888887 7888888888888888888888888888888888


Q ss_pred             cCCCCCccccccCC
Q 012694          298 FNELHGLPRAIGKL  311 (458)
Q Consensus       298 ~n~l~~l~~~l~~l  311 (458)
                      +|.++-+|+.++++
T Consensus       182 gnrl~vlppel~~l  195 (264)
T KOG0617|consen  182 GNRLTVLPPELANL  195 (264)
T ss_pred             cceeeecChhhhhh
Confidence            88888887766554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.78  E-value=1.4e-20  Score=193.21  Aligned_cols=222  Identities=29%  Similarity=0.424  Sum_probs=172.9

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  227 (458)
                      ...++++++++.+.++.+|+.++.+.+|+.++..+|.++.+|..+....+|+.|.+..|.++.+|.....+++|++|+|.
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            45568888888888888888888888888888888888888877778888888888888888887777778888888888


Q ss_pred             CCCCCCCchhhc--------------------------CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC
Q 012694          228 GNKLNTLPESIA--------------------------RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF  281 (458)
Q Consensus       228 ~n~l~~l~~~l~--------------------------~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l  281 (458)
                      .|++..+|+.+-                          .+..|+.|.+.+|.++.-.-..+.++.+|+.|+|++|++.++
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            888877665321                          133455666667776643333444778899999999988888


Q ss_pred             Cc-cccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC--chhhhC
Q 012694          282 PP-SICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL--PDTFFR  358 (458)
Q Consensus       282 ~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l--~~~l~~  358 (458)
                      |. .+.++..|+.|+|++|.++.+|..+..+..|++|...+|  .+..+| .+..+++|+.+|++.|+|+.+  |..+..
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~  475 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS  475 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence            85 467788888999999999998888888888999988887  777888 678889999999999998844  333322


Q ss_pred             CCCCcEEECcCCCCC
Q 012694          359 LENLTKLNLDQNPLV  373 (458)
Q Consensus       359 l~~L~~L~L~~n~i~  373 (458)
                       ++|++||++||.-.
T Consensus       476 -p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  476 -PNLKYLDLSGNTRL  489 (1081)
T ss_pred             -cccceeeccCCccc
Confidence             79999999999753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.77  E-value=4.5e-20  Score=189.62  Aligned_cols=85  Identities=36%  Similarity=0.564  Sum_probs=55.9

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCC
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~  230 (458)
                      +|++|++++|.+..+|..+..+.+|+.|+++.|.|..+|.+..++.+|++|.|.+|.+..+|.++..+++|++|++++|.
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~  125 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH  125 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence            36677777777766666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CCCCc
Q 012694          231 LNTLP  235 (458)
Q Consensus       231 l~~l~  235 (458)
                      +..+|
T Consensus       126 f~~~P  130 (1081)
T KOG0618|consen  126 FGPIP  130 (1081)
T ss_pred             cCCCc
Confidence            54433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=9.4e-18  Score=176.96  Aligned_cols=201  Identities=30%  Similarity=0.332  Sum_probs=119.6

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ..-..|+++++.++.+|..+.  .+|+.|++.+|+++.+|.   ..++|++|++++|+|+.+|..   .++|+.|++++|
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            446689999999999998775  489999999999999985   358999999999999988753   356677777777


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcccc-----------------CCCCCc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-----------------EMRSLK  292 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~-----------------~l~~L~  292 (458)
                      .++.+|...   ++|+.|++++|+++.+|.    .+++|+.|++++|.++.+|....                 ...+|+
T Consensus       273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq  345 (788)
T PRK15387        273 PLTHLPALP---SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQ  345 (788)
T ss_pred             chhhhhhch---hhcCEEECcCCccccccc----cccccceeECCCCccccCCCCcccccccccccCccccccccccccc
Confidence            666554421   334445555555544443    12344455554444444332100                 013566


Q ss_pred             EEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCC
Q 012694          293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL  372 (458)
Q Consensus       293 ~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i  372 (458)
                      +|++++|+|+.+|..   ..+|+.|++++|  .+..+|..   ..+|+.|++++|+|+.+|..   .++|+.|++++|++
T Consensus       346 ~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N--~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L  414 (788)
T PRK15387        346 ELSVSDNQLASLPTL---PSELYKLWAYNN--RLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRL  414 (788)
T ss_pred             eEecCCCccCCCCCC---Ccccceehhhcc--ccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcC
Confidence            666666666666542   234444455444  33344432   13455555555555555432   13455555555555


Q ss_pred             CCCc
Q 012694          373 VIPP  376 (458)
Q Consensus       373 ~~~~  376 (458)
                      +..|
T Consensus       415 ssIP  418 (788)
T PRK15387        415 TSLP  418 (788)
T ss_pred             CCCC
Confidence            5443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=8.2e-20  Score=171.67  Aligned_cols=238  Identities=26%  Similarity=0.374  Sum_probs=183.5

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeec-CCCCCCch-hhcCCCCccEEE
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSS-NLLQSLPD-SIGLLLNLKVLN  225 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~  225 (458)
                      .....++|..|+|+.+|+ +|+.+++||.|+|++|.|+.| |++|.++++|..|-+.+ |+|+++|. .|+++..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            357789999999999987 899999999999999999988 67899999988877766 88999974 788999999999


Q ss_pred             eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-------------------------
Q 012694          226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-------------------------  279 (458)
Q Consensus       226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------------------  279 (458)
                      +.-|++..+. +.+..+++|..|.+.+|.+..+..+.+..+..++.+.+..|.+-                         
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            9999998664 67888999999999999998888877777777777776555410                         


Q ss_pred             -----------------------cC--------------C-ccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEcc
Q 012694          280 -----------------------TF--------------P-PSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLS  320 (458)
Q Consensus       280 -----------------------~l--------------~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~  320 (458)
                                             .+              | ..+..+++|+.|++++|+++.+. .+|.....+++|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                   00              0 12456677888888888888764 477777888888888


Q ss_pred             CCCCCCCccc-hhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHHhhh
Q 012694          321 SNFNDLTELP-ETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRW  395 (458)
Q Consensus       321 ~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~~~~  395 (458)
                      .|  .+..+. ..|.++..|+.|+|.+|+|+.+ |.+|..+..|.+|++-.|++.+      ...+..+.+++.+.-
T Consensus       307 ~N--~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C------nC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  307 RN--KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC------NCRLAWLGEWLRKKS  375 (498)
T ss_pred             cc--hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC------ccchHHHHHHHhhCC
Confidence            77  444443 2356778888888888888866 5677778888888888887764      334455566665443

>PLN03210 Resistant to P

Probab=99.74  E-value=3.9e-17  Score=183.80  Aligned_cols=220  Identities=28%  Similarity=0.364  Sum_probs=108.2

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccC-CCCccchhhcCCcccceeeeecCC-CCCCchhhcCCCCccEEEee
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSNL-LQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~  227 (458)
                      .+|+.|++.++.+..++..+..+++|++|+++++ .++.+| .+..+++|++|++++|. +..+|..++++++|+.|+++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            3445555555555555544555555555555544 244443 24555555555555543 44555555555556666665


Q ss_pred             CC-CCCCCchhhcCCCCCcEEEcCCC---------------------CCCcCCchh------------------------
Q 012694          228 GN-KLNTLPESIARCSSLVELDASFN---------------------NLVCLPTNI------------------------  261 (458)
Q Consensus       228 ~n-~l~~l~~~l~~l~~L~~L~l~~n---------------------~l~~l~~~~------------------------  261 (458)
                      +| .++.+|..+ ++++|+.|++++|                     .++.+|...                        
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence            54 444444433 3444444444433                     222222110                        


Q ss_pred             -----hccCCCCCEEeccCCc-CccCCccccCCCCCcEEEcccC-CCCCccccccCCCcccEEEccCCCCCCCccchhhc
Q 012694          262 -----GYGLLNLERLSIKLNK-LRTFPPSICEMRSLKYLDAHFN-ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIG  334 (458)
Q Consensus       262 -----~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~  334 (458)
                           ...+++|+.|++++|. +..+|..++++++|+.|++++| .+..+|..+ ++++|+.|++++| ..+..+|.   
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c-~~L~~~p~---  843 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC-SRLRTFPD---  843 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC-Cccccccc---
Confidence                 0001233334443332 2234444555555555555544 233444332 3444555555544 22233322   


Q ss_pred             CCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCC-CCCCCc
Q 012694          335 DLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN-PLVIPP  376 (458)
Q Consensus       335 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n-~i~~~~  376 (458)
                      ...+|+.|+|++|.|+.+|.++..+++|+.|++++| .+...+
T Consensus       844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence            124667777777777777777777888888888774 444433

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.73  E-value=7.5e-17  Score=181.51  Aligned_cols=149  Identities=30%  Similarity=0.456  Sum_probs=111.3

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCC-CCCCchhhcCCCCccEEEeeC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNL-LQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      .+|+.|++.++.++.+|..| ...+|+.|++.+|.+..++..+..+++|++|+++++. ++.+|. +..+++|++|++++
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            35788888888888888776 4688999999999999888888899999999999865 677764 78899999999998


Q ss_pred             C-CCCCCchhhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCCcC-ccCCccccCCCCCcEEEcccCCCCCcc
Q 012694          229 N-KLNTLPESIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLNKL-RTFPPSICEMRSLKYLDAHFNELHGLP  305 (458)
Q Consensus       229 n-~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~l~  305 (458)
                      | .+..+|..+.++++|+.|++++| .++.+|...  ++++|+.|++++|.. ..+|..   .++|++|++++|.++.+|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP  741 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence            7 57788999999999999999986 577777654  567777777776632 233321   234444444444444433

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.3e-17  Score=160.89  Aligned_cols=233  Identities=24%  Similarity=0.253  Sum_probs=171.4

Q ss_pred             CceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCCc-------cchhhcCCcccceeeeecCCCCC-Cchhhc
Q 012694          150 VVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLEA-------MPDSIAGLQKLEELDVSSNLLQS-LPDSIG  216 (458)
Q Consensus       150 ~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~~-------l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~  216 (458)
                      ..|+.|+++++.++     .++..+...+.|++|+++++.+..       ++..+..+++|+.|++++|.+.. .+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            44999999999884     456667778889999999987763       23567788899999999998873 344444


Q ss_pred             CCC---CccEEEeeCCCCCC-----CchhhcCC-CCCcEEEcCCCCCCcCC----chhhccCCCCCEEeccCCcCc----
Q 012694          217 LLL---NLKVLNVSGNKLNT-----LPESIARC-SSLVELDASFNNLVCLP----TNIGYGLLNLERLSIKLNKLR----  279 (458)
Q Consensus       217 ~l~---~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~----  279 (458)
                      .+.   +|++|++++|+++.     +...+..+ ++|++|++++|.++.-.    ...+..+++|++|++++|.++    
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            444   49999999998872     33456667 89999999999988311    123346778999999999887    


Q ss_pred             -cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCCccchhhc----CCCCCCEEeccCCCC
Q 012694          280 -TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLTELPETIG----DLINLRELDLSNNQI  349 (458)
Q Consensus       280 -~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~----~l~~L~~L~L~~n~l  349 (458)
                       .++..+..+++|++|++++|.+++     +...+..+++|++|++++|......+.....    ..+.|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence             344456667899999999999875     3456778899999999998322111211111    247999999999999


Q ss_pred             C-----CCchhhhCCCCCcEEECcCCCCCCCcHHHHhh
Q 012694          350 R-----ALPDTFFRLENLTKLNLDQNPLVIPPMEIVNK  382 (458)
Q Consensus       350 ~-----~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~  382 (458)
                      +     .+...+..+++|+++++++|.++..+...+.+
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence            7     33456677789999999999998766554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=2.1e-18  Score=162.22  Aligned_cols=226  Identities=27%  Similarity=0.367  Sum_probs=186.5

Q ss_pred             EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeC-CC
Q 012694          154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSG-NK  230 (458)
Q Consensus       154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~-n~  230 (458)
                      .++.++-+++.+|..+.  +.-..++|..|+|+.||+ +|+.+++|+.|||++|+|+.| |++|.++..|..|.+.+ |+
T Consensus        50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            56788889999987655  477889999999999984 699999999999999999998 88999999988888776 89


Q ss_pred             CCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCC-----
Q 012694          231 LNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHG-----  303 (458)
Q Consensus       231 l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~-----  303 (458)
                      |+.+|. .|.++.+|+.|.+.-|.+..+....+..+++|..|.+..|.+..++. .+..+..++.+.+..|.+..     
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            999985 67889999999999999999999999999999999999999998876 56677777776665553110     


Q ss_pred             ---------------------------------------------------------cc-ccccCCCcccEEEccCCCCC
Q 012694          304 ---------------------------------------------------------LP-RAIGKLTRLEVLNLSSNFND  325 (458)
Q Consensus       304 ---------------------------------------------------------l~-~~l~~l~~L~~L~L~~n~~~  325 (458)
                                                                               .| ..|..+++|++|+|++|  .
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~  285 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--K  285 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--c
Confidence                                                                     11 13456889999999998  5


Q ss_pred             CCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHHHhhc
Q 012694          326 LTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIVNKG  383 (458)
Q Consensus       326 ~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~  383 (458)
                      ++.+. .+|.+...+++|.|..|+|..+. ..|.++..|+.|+|.+|+|+...+..+...
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            56663 56888889999999999998774 577889999999999999998776655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.68  E-value=9.5e-19  Score=171.42  Aligned_cols=188  Identities=36%  Similarity=0.523  Sum_probs=147.7

Q ss_pred             eeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc
Q 012694          200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR  279 (458)
Q Consensus       200 ~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  279 (458)
                      ..|++.|++..+|..+..+..|+.+.++.|.+..+|..+.++..|++|+++.|++..+|..++  .--|+.|-+++|+++
T Consensus        79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~  156 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLT  156 (722)
T ss_pred             hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccc
Confidence            345555555555555555555666666666666666666666666666666666666665554  233777777888888


Q ss_pred             cCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCC
Q 012694          280 TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRL  359 (458)
Q Consensus       280 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l  359 (458)
                      .+|+.++...+|..|+.+.|.+..+|..++.+.+|+.|++..|  .+..+|+.+..+ .|..||+++|+|+.||-.|.+|
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn--~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m  233 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN--HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKM  233 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh--hhhhCCHHHhCC-ceeeeecccCceeecchhhhhh
Confidence            8888888888899999999999999999999999999999987  778899888855 5899999999999999999999


Q ss_pred             CCCcEEECcCCCCCCCcHHHHhhcHHHHHHHHH
Q 012694          360 ENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMA  392 (458)
Q Consensus       360 ~~L~~L~L~~n~i~~~~~~~~~~~~~~l~~~~~  392 (458)
                      ..|++|-|.+|++..+|..++.+|.-.+.+|+.
T Consensus       234 ~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~  266 (722)
T KOG0532|consen  234 RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLS  266 (722)
T ss_pred             hhheeeeeccCCCCCChHHHHhccceeeeeeec
Confidence            999999999999999999999999887777653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.3e-16  Score=155.48  Aligned_cols=230  Identities=23%  Similarity=0.262  Sum_probs=170.5

Q ss_pred             HHHhccCCCceeEEEecCCCCCc-------cchhhCCCCCCcEEEcccCCCCc-cchhhcCCc---ccceeeeecCCCCC
Q 012694          142 ILQEAESGVVVETVDLADRQLKL-------LPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQ---KLEELDVSSNLLQS  210 (458)
Q Consensus       142 ~l~~~~~~~~L~~L~l~~~~l~~-------l~~~~~~l~~L~~L~l~~n~i~~-l~~~l~~l~---~L~~L~L~~n~l~~  210 (458)
                      +...+...+.++.|+++++.+..       ++..+..+++|+.|++++|.+.. .+..+..+.   +|++|++++|.++.
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            33344456779999999987762       33467788999999999998873 344454444   49999999999873


Q ss_pred             -----CchhhcCC-CCccEEEeeCCCCC-----CCchhhcCCCCCcEEEcCCCCCCc-----CCchhhccCCCCCEEecc
Q 012694          211 -----LPDSIGLL-LNLKVLNVSGNKLN-----TLPESIARCSSLVELDASFNNLVC-----LPTNIGYGLLNLERLSIK  274 (458)
Q Consensus       211 -----l~~~l~~l-~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~~~~~l~~L~~L~L~  274 (458)
                           +...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|.++.     +... ...+++|+.|+++
T Consensus       123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~  201 (319)
T cd00116         123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLN  201 (319)
T ss_pred             HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEecc
Confidence                 33456667 89999999999988     344567778899999999999883     2222 2245799999999


Q ss_pred             CCcCc-----cCCccccCCCCCcEEEcccCCCCCc--ccccc----CCCcccEEEccCCCCC---CCccchhhcCCCCCC
Q 012694          275 LNKLR-----TFPPSICEMRSLKYLDAHFNELHGL--PRAIG----KLTRLEVLNLSSNFND---LTELPETIGDLINLR  340 (458)
Q Consensus       275 ~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~l--~~~l~----~l~~L~~L~L~~n~~~---~~~l~~~l~~l~~L~  340 (458)
                      +|.++     .+...+..+++|++|++++|.+++.  .....    ..+.|++|++++|...   ...+...+..+++|+
T Consensus       202 ~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~  281 (319)
T cd00116         202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL  281 (319)
T ss_pred             CCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence            99886     3445567789999999999999862  11111    3479999999998432   123445567778999


Q ss_pred             EEeccCCCCCCC-----chhhhCC-CCCcEEECcCCCC
Q 012694          341 ELDLSNNQIRAL-----PDTFFRL-ENLTKLNLDQNPL  372 (458)
Q Consensus       341 ~L~L~~n~l~~l-----~~~l~~l-~~L~~L~L~~n~i  372 (458)
                      .+++++|.++.-     ...+... +.|++|++.+|++
T Consensus       282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999999999944     2344445 7999999999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.54  E-value=1.2e-14  Score=146.14  Aligned_cols=201  Identities=39%  Similarity=0.543  Sum_probs=133.2

Q ss_pred             EEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCC-CccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCC
Q 012694          177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL-NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLV  255 (458)
Q Consensus       177 ~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~-~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~  255 (458)
                      .+.+..+.+..-...+..++.++.|++.+|.+++++.....+. +|+.|++++|.+..+|..+..++.|+.|++++|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            4555555553333344455666666666666666666555553 667777777666666666666677777777777776


Q ss_pred             cCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcC
Q 012694          256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD  335 (458)
Q Consensus       256 ~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~  335 (458)
                      .++.... ..++|+.|++++|.+..+|........|++|.+++|.+..++..+.++.++..+.+.+|  .+..++..++.
T Consensus       177 ~l~~~~~-~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n--~~~~~~~~~~~  253 (394)
T COG4886         177 DLPKLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN--KLEDLPESIGN  253 (394)
T ss_pred             hhhhhhh-hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc--eeeeccchhcc
Confidence            6665543 46667777777777777766555555677777777765555566777777777777766  44555566777


Q ss_pred             CCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHHh
Q 012694          336 LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN  381 (458)
Q Consensus       336 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~  381 (458)
                      +++++.|++++|.++.++. ++.+.+++.|++++|.+...+.....
T Consensus       254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence            7778888888888887754 77777888888888777766554433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.52  E-value=6.9e-16  Score=151.55  Aligned_cols=195  Identities=35%  Similarity=0.488  Sum_probs=167.6

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      ...-...|++.|++..+|..++.+..|..+.+..|.|..+|..+.++..|.+|+|+.|++..+|..++.|+ |+.|.+++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            34456788999999999998888899999999999999999999999999999999999999998887765 89999999


Q ss_pred             CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccc
Q 012694          229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI  308 (458)
Q Consensus       229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l  308 (458)
                      |+++.+|..++.+..|..||.+.|.+..++..+. ++.+|+.|++..|.+..+|..++.+ .|..||+++|++..||-.|
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~-~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f  230 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG-YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF  230 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchHHhh-hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence            9999999999988899999999999999998877 7889999999999999999888855 5899999999999999999


Q ss_pred             cCCCcccEEEccCCCCCCCccchhhc---CCCCCCEEeccCCC
Q 012694          309 GKLTRLEVLNLSSNFNDLTELPETIG---DLINLRELDLSNNQ  348 (458)
Q Consensus       309 ~~l~~L~~L~L~~n~~~~~~l~~~l~---~l~~L~~L~L~~n~  348 (458)
                      .++++|++|-|.+|  .+..-|..+.   ...-.++|+..-|+
T Consensus       231 r~m~~Lq~l~LenN--PLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  231 RKMRHLQVLQLENN--PLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhhheeeeeccC--CCCCChHHHHhccceeeeeeecchhcc
Confidence            99999999999998  6666666553   23345677777773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.51  E-value=1.5e-14  Score=145.38  Aligned_cols=196  Identities=37%  Similarity=0.517  Sum_probs=160.0

Q ss_pred             EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCc-ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCC
Q 012694          154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ-KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN  232 (458)
Q Consensus       154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~-~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~  232 (458)
                      .+++..+.+..-...+..++.++.|.+.+|.++.+++....+. +|+.|++++|.+..+|..+..+++|+.|++++|+++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5777777774444455666788899999999998887777774 899999999999888877888999999999999999


Q ss_pred             CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCC
Q 012694          233 TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLT  312 (458)
Q Consensus       233 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~  312 (458)
                      .+|...+.++.|+.|++++|.+..++.... ....|++|.+++|.+...+..+.++.++..+.+.+|++..++..++.++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            888777688889999999999988887653 3556889999988777777778888888888888888888777888888


Q ss_pred             cccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694          313 RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP  353 (458)
Q Consensus       313 ~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~  353 (458)
                      +++.|++++|  .+..++. ++.+.+++.|++++|.+..++
T Consensus       256 ~l~~L~~s~n--~i~~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         256 NLETLDLSNN--QISSISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccceeccccc--ccccccc-ccccCccCEEeccCccccccc
Confidence            8999999987  6677765 788889999999998887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.49  E-value=1.2e-14  Score=135.50  Aligned_cols=233  Identities=22%  Similarity=0.271  Sum_probs=178.5

Q ss_pred             HHHHhccCCCceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCC----ccc-------hhhcCCcccceeeee
Q 012694          141 KILQEAESGVVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLE----AMP-------DSIAGLQKLEELDVS  204 (458)
Q Consensus       141 ~~l~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~----~l~-------~~l~~l~~L~~L~L~  204 (458)
                      .+.........++.++|++|.+.     .+...+.+.+.|+..++++--..    .+|       +++..+++|++|+||
T Consensus        21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            34445556788999999999987     45567888889999999874322    344       356678899999999


Q ss_pred             cCCCCC-----CchhhcCCCCccEEEeeCCCCCCCc--------------hhhcCCCCCcEEEcCCCCCCcCCc----hh
Q 012694          205 SNLLQS-----LPDSIGLLLNLKVLNVSGNKLNTLP--------------ESIARCSSLVELDASFNNLVCLPT----NI  261 (458)
Q Consensus       205 ~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~--------------~~l~~l~~L~~L~l~~n~l~~l~~----~~  261 (458)
                      .|.+..     +.+-+..+..|++|.+.+|.+....              .....-+.|+.+.+++|++..-+.    ..
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~  180 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA  180 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence            998762     2345678999999999999987321              123446789999999999986543    34


Q ss_pred             hccCCCCCEEeccCCcCc-----cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCC---c
Q 012694          262 GYGLLNLERLSIKLNKLR-----TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLT---E  328 (458)
Q Consensus       262 ~~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~---~  328 (458)
                      +...+.|+.+.+..|.|.     .+..++..+++|+.||+.+|.++.     +...+..+++|+.|++++|.....   .
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            556789999999999886     234578899999999999999987     556788899999999999833222   2


Q ss_pred             cchhh-cCCCCCCEEeccCCCCC-----CCchhhhCCCCCcEEECcCCCCC
Q 012694          329 LPETI-GDLINLRELDLSNNQIR-----ALPDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       329 l~~~l-~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      +...+ ...+.|+.|.+.+|.|+     .+..++...+.|..|+|++|.+.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            22233 34789999999999998     22345667899999999999995

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.46  E-value=1.7e-14  Score=131.73  Aligned_cols=204  Identities=26%  Similarity=0.302  Sum_probs=150.3

Q ss_pred             hCCCCCCcEEEcccCC--CC-------ccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCC----c
Q 012694          169 FGRLRGLVSLNLSRNL--LE-------AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL----P  235 (458)
Q Consensus       169 ~~~l~~L~~L~l~~n~--i~-------~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l----~  235 (458)
                      +.-+..|++|.+++..  |.       .+|-.+.-+.+|..+.++.+.-..+.+....-|.|+++.+.+..++..    |
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p  257 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP  257 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence            3345566666666531  11       223334445666666666665444332222345666666665543311    1


Q ss_pred             h--------------------hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEE
Q 012694          236 E--------------------SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD  295 (458)
Q Consensus       236 ~--------------------~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  295 (458)
                      .                    .+...+.|+++|+++|.++.++..+. -.|.++.|+++.|+|..+. .+..+++|+.||
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LD  335 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVK-LAPKLRRLILSQNRIRTVQ-NLAELPQLQLLD  335 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhh-hccceeEEeccccceeeeh-hhhhcccceEee
Confidence            1                    12234678999999999999998876 6899999999999999884 489999999999


Q ss_pred             cccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCC
Q 012694          296 AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       296 l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~  373 (458)
                      +++|.++.+..+-.++.+++.|.|++|  .+..+ ..++.+-+|..||+++|+|..+.  ..++++|.|+.+.|.+|++.
T Consensus       336 LS~N~Ls~~~Gwh~KLGNIKtL~La~N--~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  336 LSGNLLAECVGWHLKLGNIKTLKLAQN--KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             cccchhHhhhhhHhhhcCEeeeehhhh--hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            999999998877788999999999998  55555 56778889999999999999774  57899999999999999998


Q ss_pred             CCcH
Q 012694          374 IPPM  377 (458)
Q Consensus       374 ~~~~  377 (458)
                      ..+.
T Consensus       413 ~~vd  416 (490)
T KOG1259|consen  413 GSVD  416 (490)
T ss_pred             ccch
Confidence            7753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.1e-14  Score=139.07  Aligned_cols=201  Identities=24%  Similarity=0.281  Sum_probs=126.9

Q ss_pred             CCCceeEEEecCCCCCccc--hhhCCCCCCcEEEcccCCCCcc---chhhcCCcccceeeeecCCCCCCchh--hcCCCC
Q 012694          148 SGVVVETVDLADRQLKLLP--EAFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELDVSSNLLQSLPDS--IGLLLN  220 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~--~~~~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~--l~~l~~  220 (458)
                      +.++|+.+.|.++.+...+  .....|++++.|+|++|-+...   ......+++|+.|+++.|.+...-++  -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4567888888888877555  3566788888888888876643   34456788888888888876643221  124677


Q ss_pred             ccEEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC--ccccCCCCCcEEEc
Q 012694          221 LKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDA  296 (458)
Q Consensus       221 L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l  296 (458)
                      |+.|.+++|.++  .+...+..+++|..|++..|....+...-...+..|+.|+|++|.+..++  ...+.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            888888888877  33334455777888888777422222222224556777777777776555  44566777777777


Q ss_pred             ccCCCCCc--ccc-----ccCCCcccEEEccCCCCCCCccc--hhhcCCCCCCEEeccCCCCC
Q 012694          297 HFNELHGL--PRA-----IGKLTRLEVLNLSSNFNDLTELP--ETIGDLINLRELDLSNNQIR  350 (458)
Q Consensus       297 ~~n~l~~l--~~~-----l~~l~~L~~L~L~~n~~~~~~l~--~~l~~l~~L~~L~L~~n~l~  350 (458)
                      +.|.++++  |+.     ...+++|++|++..|  .+.+++  ..+..+++|+.|.+..|.++
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N--~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN--NIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccC--ccccccccchhhccchhhhhhccccccc
Confidence            77777663  322     244566666666666  333332  23444556666666666555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.36  E-value=4.9e-13  Score=116.96  Aligned_cols=122  Identities=28%  Similarity=0.391  Sum_probs=32.1

Q ss_pred             ccceeeeecCCCCCCchhhc-CCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC
Q 012694          197 KLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL  275 (458)
Q Consensus       197 ~L~~L~L~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~  275 (458)
                      ++++|+|++|.|+.+. .++ .+.+|+.|++++|.++.+ +++..++.|++|++++|.++.+..++...+++|++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            4444444444444442 232 244444444444444444 2344444555555555555444433322345555555555


Q ss_pred             CcCccCC--ccccCCCCCcEEEcccCCCCCcc----ccccCCCcccEEEcc
Q 012694          276 NKLRTFP--PSICEMRSLKYLDAHFNELHGLP----RAIGKLTRLEVLNLS  320 (458)
Q Consensus       276 n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~----~~l~~l~~L~~L~L~  320 (458)
                      |+|..+.  ..+..+++|+.|++.+|.++.-+    ..+..+|+|+.||-.
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            5544321  23445556666666666555432    134455555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.4e-13  Score=130.12  Aligned_cols=213  Identities=26%  Similarity=0.253  Sum_probs=146.9

Q ss_pred             CccchhhCCCCCCcEEEcccCCCCccc--hhhcCCcccceeeeecCCCCCC---chhhcCCCCccEEEeeCCCCCCCchh
Q 012694          163 KLLPEAFGRLRGLVSLNLSRNLLEAMP--DSIAGLQKLEELDVSSNLLQSL---PDSIGLLLNLKVLNVSGNKLNTLPES  237 (458)
Q Consensus       163 ~~l~~~~~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~~L~L~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~  237 (458)
                      .++..-=+++.+|+...|.++.+...+  .....|++++.|||+.|-+...   ..-...+++|+.|+++.|++...-.+
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence            344444456778888888888887665  3567888888899888877643   23456788888888888887633221


Q ss_pred             --hcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCc-CccCCccccCCCCCcEEEcccCCCCCcc--ccccCC
Q 012694          238 --IARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNK-LRTFPPSICEMRSLKYLDAHFNELHGLP--RAIGKL  311 (458)
Q Consensus       238 --l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l  311 (458)
                        -..++.|+.|.++.|.++.-. ..+...+|+|+.|++..|. +.........+..|+.|+|++|++.+.+  ...+.+
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence              124678888888888887322 1223368888888888884 3322223344667888888888888765  567788


Q ss_pred             CcccEEEccCCCCCCCccchh-----hcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCC
Q 012694          312 TRLEVLNLSSNFNDLTELPET-----IGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       312 ~~L~~L~L~~n~~~~~~l~~~-----l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      +.|+.|+++.|.+....+|+.     ...+++|+.|++..|+|.+.+  ..+..+++|+.|.+..|++...
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            888888888873332333433     345788888999888887664  3566678888888888877654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.34  E-value=1e-12  Score=115.02  Aligned_cols=103  Identities=28%  Similarity=0.431  Sum_probs=24.0

Q ss_pred             ceeEEEecCCCCCccchhhC-CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhh-cCCCCccEEEeeC
Q 012694          151 VVETVDLADRQLKLLPEAFG-RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSG  228 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~~L~l~~  228 (458)
                      .++.|+|.+|.|+.+. .++ .+.+|+.|++++|.|+.+. .+..+++|++|++++|.|+++...+ ..+++|++|++++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            3455555555555442 232 3445555555555555552 3445555555555555555553333 2345555555555


Q ss_pred             CCCCCCc--hhhcCCCCCcEEEcCCCCCC
Q 012694          229 NKLNTLP--ESIARCSSLVELDASFNNLV  255 (458)
Q Consensus       229 n~l~~l~--~~l~~l~~L~~L~l~~n~l~  255 (458)
                      |+|..+.  ..+..+++|+.|++.+|.++
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5544331  23334444444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.33  E-value=2.2e-13  Score=124.42  Aligned_cols=226  Identities=25%  Similarity=0.292  Sum_probs=163.5

Q ss_pred             hHHHHHHhccCCCceeEEEecCCC-------CC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCC
Q 012694          138 DVVKILQEAESGVVVETVDLADRQ-------LK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLL  208 (458)
Q Consensus       138 ~~~~~l~~~~~~~~L~~L~l~~~~-------l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l  208 (458)
                      +...++...   ..|..|-.++..       |.  .+|..+.-+.+|+.+.++.|.-..|-+....-+.|+++.+.+..+
T Consensus       173 d~~hildf~---~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~  249 (490)
T KOG1259|consen  173 DFSHVLDFC---TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTI  249 (490)
T ss_pred             chHHHHHhh---hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccc
Confidence            444555443   456666666542       11  344456667788888888886555433233346677777776654


Q ss_pred             CCC----c--------------------hhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhcc
Q 012694          209 QSL----P--------------------DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG  264 (458)
Q Consensus       209 ~~l----~--------------------~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~  264 (458)
                      ...    |                    ..+...+.|+.+|+++|.|+.+.+++.-.+.++.|+++.|.+..+..  ...
T Consensus       250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~  327 (490)
T KOG1259|consen  250 QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAE  327 (490)
T ss_pred             cccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhh
Confidence            421    1                    11234578999999999999998888889999999999999998876  336


Q ss_pred             CCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccc--hhhcCCCCCCEE
Q 012694          265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP--ETIGDLINLREL  342 (458)
Q Consensus       265 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~--~~l~~l~~L~~L  342 (458)
                      +++|+.|++++|.++.+..+-..+.++++|.+++|.|.++. .++++-+|..||+++|  .+..+.  ..++.++.|+.+
T Consensus       328 L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N--~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSN--QIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheecccccc--chhhHHHhcccccccHHHHH
Confidence            99999999999999988666667889999999999999884 4888889999999998  444442  457899999999


Q ss_pred             eccCCCCCCCch----hhhCC-CCCcEEECcCCC
Q 012694          343 DLSNNQIRALPD----TFFRL-ENLTKLNLDQNP  371 (458)
Q Consensus       343 ~L~~n~l~~l~~----~l~~l-~~L~~L~L~~n~  371 (458)
                      .|.+|.|..+++    .+..+ ..=.++.|++-+
T Consensus       405 ~L~~NPl~~~vdYRTKVLa~FGERaSE~~LD~~~  438 (490)
T KOG1259|consen  405 RLTGNPLAGSVDYRTKVLARFGERASEISLDNEP  438 (490)
T ss_pred             hhcCCCccccchHHHHHHHHHhhhhhheecCCCC
Confidence            999999997763    22221 233456666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.31  E-value=1.4e-13  Score=139.03  Aligned_cols=226  Identities=28%  Similarity=0.351  Sum_probs=154.6

Q ss_pred             HHhccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCcc
Q 012694          143 LQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLK  222 (458)
Q Consensus       143 l~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~  222 (458)
                      ...+...++++.|++.+|.|..+...+..+.+|++|++++|.|+.+. .+..+..|+.|++++|.|+.+. .+..++.|+
T Consensus        88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~  165 (414)
T KOG0531|consen   88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLK  165 (414)
T ss_pred             hcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhh
Confidence            33355667788888888888877654677788888888888888773 4667777888888888887773 355577888


Q ss_pred             EEEeeCCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCC--CcEEEcccC
Q 012694          223 VLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRS--LKYLDAHFN  299 (458)
Q Consensus       223 ~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~--L~~L~l~~n  299 (458)
                      .+++++|++..+... ...+.+++.+++.+|.+..+....  .+..+..+++..|.++.+ ..+..+..  |+.+++++|
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~--~~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLD--LLKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSGN  242 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchH--HHHHHHHhhcccccceec-cCcccchhHHHHHHhcccC
Confidence            888888887766443 466777888888888777655322  233444457777777655 33334443  788888888


Q ss_pred             CCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC---CCch--hhhCCCCCcEEECcCCCCCC
Q 012694          300 ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR---ALPD--TFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       300 ~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~---~l~~--~l~~l~~L~~L~L~~n~i~~  374 (458)
                      .+..++..+..+.++..|++.+|  .+..+ ..+.....+..+....|.+.   ....  .....+.+..+.+.+|++..
T Consensus       243 ~i~~~~~~~~~~~~l~~l~~~~n--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  243 RISRSPEGLENLKNLPVLDLSSN--RISNL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccccccccccchhhc--ccccc-ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            88877666777888888888876  33343 23445566677777777665   2111  25567788888888888876


Q ss_pred             Cc
Q 012694          375 PP  376 (458)
Q Consensus       375 ~~  376 (458)
                      ..
T Consensus       320 ~~  321 (414)
T KOG0531|consen  320 IS  321 (414)
T ss_pred             cc
Confidence            43

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=1.6e-12  Score=121.39  Aligned_cols=218  Identities=22%  Similarity=0.264  Sum_probs=163.7

Q ss_pred             hhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCC----CCc-------hhhcCCCCccEEEeeCCC
Q 012694          167 EAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQ----SLP-------DSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       167 ~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~----~l~-------~~l~~l~~L~~L~l~~n~  230 (458)
                      +.+.....++.+++++|.++     .+...+.+.++|+.-++++--..    .+|       .++..+++|++|+||+|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            35566789999999999998     45667888889999998865322    334       345567899999999998


Q ss_pred             CCC-----CchhhcCCCCCcEEEcCCCCCCcCCchh-------------hccCCCCCEEeccCCcCccC-----CccccC
Q 012694          231 LNT-----LPESIARCSSLVELDASFNNLVCLPTNI-------------GYGLLNLERLSIKLNKLRTF-----PPSICE  287 (458)
Q Consensus       231 l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~~~~-------------~~~l~~L~~L~L~~n~l~~l-----~~~l~~  287 (458)
                      +..     +..-+..++.|++|.+.+|.+.......             ...-++|+.+..++|++...     ...+..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            872     2244677999999999999987433222             12457899999999998744     345677


Q ss_pred             CCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCC---CccchhhcCCCCCCEEeccCCCCCC-----Cch
Q 012694          288 MRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDL---TELPETIGDLINLRELDLSNNQIRA-----LPD  354 (458)
Q Consensus       288 l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~l~~-----l~~  354 (458)
                      .+.|+.+.+..|.|..     +...+..+++|++|||..|....   ..+...+..+++|++|++++|.++.     +..
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            7899999999998866     34578899999999999994322   2344567788999999999999882     223


Q ss_pred             hhh-CCCCCcEEECcCCCCCCCcHHHHhhcH
Q 012694          355 TFF-RLENLTKLNLDQNPLVIPPMEIVNKGV  384 (458)
Q Consensus       355 ~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~  384 (458)
                      .+. ..|+|+.|.+.+|.|+.....++..+.
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~  294 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACM  294 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence            333 379999999999999876655544433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.19  E-value=3.9e-12  Score=128.49  Aligned_cols=217  Identities=29%  Similarity=0.423  Sum_probs=174.9

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ..++.+.+..|.+..+-..+..+.+|..|++.+|.|..+...+..+.+|++|++++|.|+++ ..+..++.|+.|++.+|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN  150 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC
Confidence            44666668888887755567889999999999999999865588999999999999999998 45778888999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      .++.+ ..+..++.|+.+++++|.+..+.......+.+++.+.+.+|.+..+ ..+..+..+..+++..|.++.+.. +.
T Consensus       151 ~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~-l~  227 (414)
T KOG0531|consen  151 LISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG-LN  227 (414)
T ss_pred             cchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC-cc
Confidence            99987 4566699999999999999988762023789999999999999877 455566667777899998888633 33


Q ss_pred             CCCc--ccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCC
Q 012694          310 KLTR--LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       310 ~l~~--L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      .+..  |+.+++++|  .+..++..+..+.++..|++.+|++..+ ..+...+.+..+....|++.
T Consensus       228 ~~~~~~L~~l~l~~n--~i~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  228 ELVMLHLRELYLSGN--RISRSPEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cchhHHHHHHhcccC--ccccccccccccccccccchhhcccccc-ccccccchHHHhccCcchhc
Confidence            3343  899999998  5566656678889999999999999876 34556677777777777766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.02  E-value=2.2e-10  Score=124.01  Aligned_cols=129  Identities=26%  Similarity=0.314  Sum_probs=100.1

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCC--CCccch-hhcCCcccceeeeecCC-CCCCchhhcCCCCccE
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNL--LEAMPD-SIAGLQKLEELDVSSNL-LQSLPDSIGLLLNLKV  223 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~--i~~l~~-~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~  223 (458)
                      ....++++.+.++.+..++... .++.|++|-+.+|.  +..++. .|..++.|++||+++|. +..+|..++.+-+|++
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            4466788888888887776543 34578888888885  556653 47888999999999775 7788888888999999


Q ss_pred             EEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCc
Q 012694          224 LNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNK  277 (458)
Q Consensus       224 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~  277 (458)
                      |+++++.++.+|.++.+++.|.+|++..+.-.....++...+++|++|.+....
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999888899899999999999988876444445565568888888886554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.91  E-value=9.4e-10  Score=119.16  Aligned_cols=227  Identities=26%  Similarity=0.247  Sum_probs=124.5

Q ss_pred             CCCceeEEEecCCC--CCccch-hhCCCCCCcEEEcccC-CCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccE
Q 012694          148 SGVVVETVDLADRQ--LKLLPE-AFGRLRGLVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKV  223 (458)
Q Consensus       148 ~~~~L~~L~l~~~~--l~~l~~-~~~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~  223 (458)
                      .++++++|-+.+|.  +..++. .|..++.|++|++++| .++.+|..++.+-+|++|+++++.|+.+|.+++++..|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            44567777777775  444443 4666777777777766 5667777777777777777777777777777777777777


Q ss_pred             EEeeCCC-CCCCchhhcCCCCCcEEEcCCCCC--CcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCc----EEEc
Q 012694          224 LNVSGNK-LNTLPESIARCSSLVELDASFNNL--VCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLK----YLDA  296 (458)
Q Consensus       224 L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~----~L~l  296 (458)
                      |++..+. +..+|.....+++|++|.+.....  +........++.+|+.+....... .+...+..++.|.    .+.+
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh
Confidence            7777663 334444455577777777655431  111111112444444444433322 1112223333332    2333


Q ss_pred             ccCCCCCccccccCCCcccEEEccCCCCCCCccc-hhhc-----C-CCCCCEEeccCCCCCCCchhhhCCCCCcEEECcC
Q 012694          297 HFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP-ETIG-----D-LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQ  369 (458)
Q Consensus       297 ~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~-----~-l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~  369 (458)
                      .++.....+..+..+.+|+.|.+.++  .+.+.. .+..     . ++++..+...++..-..+.+.--.++|+.|.+..
T Consensus       702 ~~~~~~~~~~~~~~l~~L~~L~i~~~--~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~  779 (889)
T KOG4658|consen  702 EGCSKRTLISSLGSLGNLEELSILDC--GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS  779 (889)
T ss_pred             cccccceeecccccccCcceEEEEcC--CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence            33444445555667777777777776  222111 1111     1 2233333333432222233444457888888887


Q ss_pred             CCCCCCcH
Q 012694          370 NPLVIPPM  377 (458)
Q Consensus       370 n~i~~~~~  377 (458)
                      +.....++
T Consensus       780 ~~~~e~~i  787 (889)
T KOG4658|consen  780 CRLLEDII  787 (889)
T ss_pred             ccccccCC
Confidence            77665544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.88  E-value=1.9e-11  Score=123.68  Aligned_cols=130  Identities=32%  Similarity=0.435  Sum_probs=92.9

Q ss_pred             CCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC
Q 012694          243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN  322 (458)
Q Consensus       243 ~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n  322 (458)
                      .|...++++|.+..++...- -++.|+.|+|+.|+++... .+..++.|++||+++|.++.+|..-..-.+|..|.+++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence            45566667777666655443 4677777777777777663 677788888888888888887752222234888888887


Q ss_pred             CCCCCccchhhcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCCcH
Q 012694          323 FNDLTELPETIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       323 ~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                        .++.+ ..+.++.+|+.||+++|-|....  ..+..+..|+.|+|.||++.+.|.
T Consensus       243 --~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  243 --ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             --HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence              55555 45677888889999999777442  356667888999999999887664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.87  E-value=7.1e-11  Score=119.64  Aligned_cols=123  Identities=33%  Similarity=0.384  Sum_probs=103.1

Q ss_pred             ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC
Q 012694          197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN  276 (458)
Q Consensus       197 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n  276 (458)
                      .|.+.++++|.+..+..++.-++.|+.|+|++|+++... .+..|++|++||+++|.+..+|.-...++. |..|.+++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            577788888888888778888899999999999999874 788899999999999999988865444444 999999999


Q ss_pred             cCccCCccccCCCCCcEEEcccCCCCCcc--ccccCCCcccEEEccCC
Q 012694          277 KLRTFPPSICEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLNLSSN  322 (458)
Q Consensus       277 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n  322 (458)
                      .++++ ..+.++++|+.||+++|-|.+-.  ..+..+..|+.|+|.+|
T Consensus       243 ~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  243 ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            99988 57888999999999999887732  24667788999999998

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=2.6e-09  Score=98.01  Aligned_cols=223  Identities=21%  Similarity=0.161  Sum_probs=149.4

Q ss_pred             CceeEEEecCCCCCccch--hh-CCCCCCcEEEcccCCCCc---cchhhcCCcccceeeeecCCCCCCchhh-cCCCCcc
Q 012694          150 VVVETVDLADRQLKLLPE--AF-GRLRGLVSLNLSRNLLEA---MPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLK  222 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~--~~-~~l~~L~~L~l~~n~i~~---l~~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~  222 (458)
                      ..++.|.+.++.|....+  .| ..+..++.++|.+|.|+.   +...+.+++.|++|+++.|.+...-..+ ..+.+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345567777777764332  22 346789999999999984   4455789999999999999877432333 3567899


Q ss_pred             EEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCC--chhhc-cCCCCCEEeccCCcCc---cCCccccCCCCCcEE
Q 012694          223 VLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLP--TNIGY-GLLNLERLSIKLNKLR---TFPPSICEMRSLKYL  294 (458)
Q Consensus       223 ~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~--~~~~~-~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L  294 (458)
                      +|.|.+..+.  .....+..++.+++|.++.|++..+.  ..... .-+.+++|+...|...   .+..--..++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            9999998765  45556777889999999998655322  21111 2235666766666443   121122345788888


Q ss_pred             EcccCCCCCcc--ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC-C----c--hhhhCCCCCcEE
Q 012694          295 DAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA-L----P--DTFFRLENLTKL  365 (458)
Q Consensus       295 ~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~-l----~--~~l~~l~~L~~L  365 (458)
                      -+..|.+.+..  .....++.+..|+|+.|.++.-.-.+.+.++++|..|.+++|.+.+ +    +  -.++.+++++.|
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence            88888887743  4566778888899998733322223567889999999999997762 1    1  135678888887


Q ss_pred             ECcCCCCCC
Q 012694          366 NLDQNPLVI  374 (458)
Q Consensus       366 ~L~~n~i~~  374 (458)
                      +=+  +|..
T Consensus       285 NGs--kIss  291 (418)
T KOG2982|consen  285 NGS--KISS  291 (418)
T ss_pred             cCc--ccch
Confidence            644  5553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.78  E-value=3.2e-09  Score=96.25  Aligned_cols=239  Identities=22%  Similarity=0.192  Sum_probs=159.8

Q ss_pred             hhHHHHHHhccCCCceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCC----cc-------chhhcCCcccce
Q 012694          137 EDVVKILQEAESGVVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLE----AM-------PDSIAGLQKLEE  200 (458)
Q Consensus       137 ~~~~~~l~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~----~l-------~~~l~~l~~L~~  200 (458)
                      +++...+..+..+..+..++|+||.|.     .+...+..-.+|+..+++.-..+    .+       .+++-+|++|+.
T Consensus        17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~   96 (388)
T COG5238          17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK   96 (388)
T ss_pred             chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence            344445555556788999999999987     44456667788999888875433    22       246678999999


Q ss_pred             eeeecCCCCC-C----chhhcCCCCccEEEeeCCCCCCCc-----hh---------hcCCCCCcEEEcCCCCCCcCCch-
Q 012694          201 LDVSSNLLQS-L----PDSIGLLLNLKVLNVSGNKLNTLP-----ES---------IARCSSLVELDASFNNLVCLPTN-  260 (458)
Q Consensus       201 L~L~~n~l~~-l----~~~l~~l~~L~~L~l~~n~l~~l~-----~~---------l~~l~~L~~L~l~~n~l~~l~~~-  260 (458)
                      .+||.|.+.. .    .+.+++-+.|++|.+++|.+..+.     .+         ..+-+.|+...+..|++...+.. 
T Consensus        97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238          97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence            9999998762 2    345677889999999999887442     11         23457888999999988755432 


Q ss_pred             ---hhccCCCCCEEeccCCcCcc--C----CccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCC
Q 012694          261 ---IGYGLLNLERLSIKLNKLRT--F----PPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDL  326 (458)
Q Consensus       261 ---~~~~l~~L~~L~L~~n~l~~--l----~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~  326 (458)
                         .+..-.+|+.+.+..|.|..  +    ...+..+.+|+.||+..|.++.     +...+..++.|+.|.+..|...-
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence               22122578888888888861  1    1245567788888888888776     33456677778888888873332


Q ss_pred             Cccchhh-----cCCCCCCEEeccCCCCC--C-----Cchh-hhCCCCCcEEECcCCCCCCC
Q 012694          327 TELPETI-----GDLINLRELDLSNNQIR--A-----LPDT-FFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       327 ~~l~~~l-----~~l~~L~~L~L~~n~l~--~-----l~~~-l~~l~~L~~L~L~~n~i~~~  375 (458)
                      ......+     ...++|..|-..+|.+.  .     ++.. =..+|-|..|.+.||.|...
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            2222222     23567788888887544  1     1111 12467777777788877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=1.3e-09  Score=99.98  Aligned_cols=172  Identities=20%  Similarity=0.190  Sum_probs=84.5

Q ss_pred             cceeeeecCCCC--CCchhhcCCCCccEEEeeCCCCC-CCchhhcCCCCCcEEEcCCCC-CCcCC-chhhccCCCCCEEe
Q 012694          198 LEELDVSSNLLQ--SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASFNN-LVCLP-TNIGYGLLNLERLS  272 (458)
Q Consensus       198 L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~-l~~l~-~~~~~~l~~L~~L~  272 (458)
                      |++|||++..|+  .+..-+..+.+|+.|.+.++++. .+...+.+..+|+.|+++.++ ++... .-++..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            555555555544  22233444555555555555554 233344445555555555442 33222 12334555566666


Q ss_pred             ccCCcCcc--CCcccc-CCCCCcEEEcccCC----CCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEecc
Q 012694          273 IKLNKLRT--FPPSIC-EMRSLKYLDAHFNE----LHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS  345 (458)
Q Consensus       273 L~~n~l~~--l~~~l~-~l~~L~~L~l~~n~----l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~  345 (458)
                      ++.|.+..  +...+. --++|..|+++++.    ...+......+++|.+|||++|..--......+..++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            66554431  100111 12356666666552    122333345667777777777622111222345566777777777


Q ss_pred             CCCCCCCc---hhhhCCCCCcEEECcCC
Q 012694          346 NNQIRALP---DTFFRLENLTKLNLDQN  370 (458)
Q Consensus       346 ~n~l~~l~---~~l~~l~~L~~L~L~~n  370 (458)
                      .|..- +|   -.+...|.|.+|++.++
T Consensus       347 RCY~i-~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  347 RCYDI-IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhcCC-ChHHeeeeccCcceEEEEeccc
Confidence            77322 12   23456677777777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=1.7e-08  Score=72.66  Aligned_cols=57  Identities=47%  Similarity=0.679  Sum_probs=27.8

Q ss_pred             CCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCCC
Q 012694          174 GLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       174 ~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~  230 (458)
                      +|++|++++|+++.+| ..|.++++|++|++++|.++.++ ..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4445555555555444 23445555555555555555442 244455555555555543

...

>PLN03150 hypothetical protein; Provisional

Probab=98.65  E-value=7.6e-08  Score=101.99  Aligned_cols=103  Identities=30%  Similarity=0.498  Sum_probs=69.4

Q ss_pred             CcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEEeeCCCCC-CCchhhcCCCCCcEEEcCC
Q 012694          175 LVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASF  251 (458)
Q Consensus       175 L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~  251 (458)
                      ++.|+|++|.++ .+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|+++ .+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            566777777665 55666777777777777777765 55666777777777777777776 5666777777777777777


Q ss_pred             CCCC-cCCchhhccCCCCCEEeccCCc
Q 012694          252 NNLV-CLPTNIGYGLLNLERLSIKLNK  277 (458)
Q Consensus       252 n~l~-~l~~~~~~~l~~L~~L~L~~n~  277 (458)
                      |.++ .+|..+.....++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            7766 4555444333456667776663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=2.3e-08  Score=71.91  Aligned_cols=36  Identities=36%  Similarity=0.386  Sum_probs=13.5

Q ss_pred             CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC
Q 012694          241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN  276 (458)
Q Consensus       241 l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n  276 (458)
                      +++|++|++++|.++.++...+.++++|++|++++|
T Consensus        24 l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   24 LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             GTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333333333333333333333333333333333333

...

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=1e-07  Score=100.99  Aligned_cols=106  Identities=29%  Similarity=0.486  Sum_probs=83.2

Q ss_pred             CCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEecc
Q 012694          268 LERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS  345 (458)
Q Consensus       268 L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~  345 (458)
                      ++.|+|++|.+. .+|..+..+++|+.|++++|.+.+ +|..++.+++|+.|+|++|. -.+.+|+.++.+++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEECc
Confidence            677888888887 677788888888888888888875 77778888888888888883 224678888888888888888


Q ss_pred             CCCCC-CCchhhhCC-CCCcEEECcCCCCCC
Q 012694          346 NNQIR-ALPDTFFRL-ENLTKLNLDQNPLVI  374 (458)
Q Consensus       346 ~n~l~-~l~~~l~~l-~~L~~L~L~~n~i~~  374 (458)
                      +|+++ .+|..++.. .++..+++.+|+..+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            88887 667776653 466788888876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.57  E-value=5.5e-09  Score=85.36  Aligned_cols=113  Identities=22%  Similarity=0.309  Sum_probs=82.1

Q ss_pred             CceeEEEecCCCCCccch---hhCCCCCCcEEEcccCCCCccchhhc-CCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          150 VVVETVDLADRQLKLLPE---AFGRLRGLVSLNLSRNLLEAMPDSIA-GLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~---~~~~l~~L~~L~l~~n~i~~l~~~l~-~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      ..+-.++|+.|.+-.+++   .+.+...|+..++++|.+..+|+.|. ..+.+++|++++|.|+++|..+..++.|+.|+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            445567777776665544   45555667777888888877776654 34577888888888888887788888888888


Q ss_pred             eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhh
Q 012694          226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIG  262 (458)
Q Consensus       226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~  262 (458)
                      ++.|.+...|..+..+.+|-.|+..+|.+..++...+
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence            8888888777777777777788888777777765543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.56  E-value=6.4e-08  Score=79.21  Aligned_cols=99  Identities=22%  Similarity=0.387  Sum_probs=86.3

Q ss_pred             HHHHHhccCCCceeEEEecCCCCCccchhhCC-CCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCC
Q 012694          140 VKILQEAESGVVVETVDLADRQLKLLPEAFGR-LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLL  218 (458)
Q Consensus       140 ~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~-l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l  218 (458)
                      .+....+.....|+..++++|.+..+|+.|.. ++.++.|++.+|.|..+|..+..++.|+.|+++.|.+...|..+..+
T Consensus        43 ~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L  122 (177)
T KOG4579|consen   43 ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL  122 (177)
T ss_pred             HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHH
Confidence            33444455667899999999999999986665 46899999999999999999999999999999999999999888889


Q ss_pred             CCccEEEeeCCCCCCCchhh
Q 012694          219 LNLKVLNVSGNKLNTLPESI  238 (458)
Q Consensus       219 ~~L~~L~l~~n~l~~l~~~l  238 (458)
                      .+|-.|+..+|.+..++.++
T Consensus       123 ~~l~~Lds~~na~~eid~dl  142 (177)
T KOG4579|consen  123 IKLDMLDSPENARAEIDVDL  142 (177)
T ss_pred             HhHHHhcCCCCccccCcHHH
Confidence            99999999999988887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=3.4e-09  Score=97.31  Aligned_cols=215  Identities=20%  Similarity=0.171  Sum_probs=146.5

Q ss_pred             CceeEEEecCCCCC--ccchhhCCC-CCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCC-CchhhcCCCCccE
Q 012694          150 VVVETVDLADRQLK--LLPEAFGRL-RGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKV  223 (458)
Q Consensus       150 ~~L~~L~l~~~~l~--~l~~~~~~l-~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~  223 (458)
                      ..+..+.+....+.  .+.+.+.-+ ..|++|+|++..|+  .+...+..|.+|+.|.+.++++.+ +...+..-.+|+.
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~  238 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR  238 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence            45777777655443  233333322 46999999999888  444567889999999999999884 5667888899999


Q ss_pred             EEeeCC-CCCCC--chhhcCCCCCcEEEcCCCCCCc--CCchhhccCCCCCEEeccCCcCc----cCCccccCCCCCcEE
Q 012694          224 LNVSGN-KLNTL--PESIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLR----TFPPSICEMRSLKYL  294 (458)
Q Consensus       224 L~l~~n-~l~~l--~~~l~~l~~L~~L~l~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~----~l~~~l~~l~~L~~L  294 (458)
                      |+++.+ .+++.  .--+.+|+.|.+|+++-|.+..  +...+..--++|+.|+++++.-.    .+..-...+++|..|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            999987 67743  3457789999999999987652  22222323467899999887422    232234678999999


Q ss_pred             EcccCCC-CC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcE
Q 012694          295 DAHFNEL-HG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTK  364 (458)
Q Consensus       295 ~l~~n~l-~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~  364 (458)
                      ||++|.. +. +-..+.+++.|++|.++.|+.-..+.--.+...+.|.+|++.++-=. ...-....+++|+.
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            9998854 33 33457789999999999983222221123577899999999887321 22112334566553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=4.6e-08  Score=89.98  Aligned_cols=205  Identities=20%  Similarity=0.196  Sum_probs=140.4

Q ss_pred             CCCCCcEEEcccCCCCccchh--h-cCCcccceeeeecCCCCCC---chhhcCCCCccEEEeeCCCCCCCchhh-cCCCC
Q 012694          171 RLRGLVSLNLSRNLLEAMPDS--I-AGLQKLEELDVSSNLLQSL---PDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSS  243 (458)
Q Consensus       171 ~l~~L~~L~l~~n~i~~l~~~--l-~~l~~L~~L~L~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l-~~l~~  243 (458)
                      ....+..|.+.++.|....+.  | ..+..+++|||.+|.|++.   ...+.++|.|++|+++.|.+..--..+ ....+
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            334566777888888765432  3 3568899999999999854   445688999999999999887432333 34678


Q ss_pred             CcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCC---ccccC-CCCCcEEEcccCCCCC---ccccccCCCccc
Q 012694          244 LVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFP---PSICE-MRSLKYLDAHFNELHG---LPRAIGKLTRLE  315 (458)
Q Consensus       244 L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~---~~l~~-l~~L~~L~l~~n~l~~---l~~~l~~l~~L~  315 (458)
                      |+.|-+.++.+..-. ......+|.++.|+++.|.+..+-   +.... -+.+++|....|....   +-..-.-++++.
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            999999988766222 233347888899999988666331   11111 2355666666654322   112223467888


Q ss_pred             EEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc--hhhhCCCCCcEEECcCCCCCCC
Q 012694          316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       316 ~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+.+..|......-.+....++.+-.|+|+.|+|.+..  +.+.+++.|..|.+.+||+.+.
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            88888874333333344566778889999999999663  6889999999999999998754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.42  E-value=1.5e-07  Score=85.54  Aligned_cols=208  Identities=23%  Similarity=0.215  Sum_probs=146.1

Q ss_pred             hhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCC----CCc-------hhhcCCCCccEEEeeCCC
Q 012694          167 EAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQ----SLP-------DSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       167 ~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~----~l~-------~~l~~l~~L~~L~l~~n~  230 (458)
                      ..+..+..++.++|++|.|+     .+...+.+-.+|++.+++.-...    .++       .++-+|++|++.+|++|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34455788999999999998     34556777788999888865433    222       346789999999999998


Q ss_pred             CC-CCc----hhhcCCCCCcEEEcCCCCCCcCCchhh-------------ccCCCCCEEeccCCcCccCCcc-----ccC
Q 012694          231 LN-TLP----ESIARCSSLVELDASFNNLVCLPTNIG-------------YGLLNLERLSIKLNKLRTFPPS-----ICE  287 (458)
Q Consensus       231 l~-~l~----~~l~~l~~L~~L~l~~n~l~~l~~~~~-------------~~l~~L~~L~L~~n~l~~l~~~-----l~~  287 (458)
                      +. ..|    +-++.-+.|++|.+++|.+..+..+-.             ..-|.|+...+..|++...+..     +..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            87 333    356778899999999998875442211             1456799999999988866532     233


Q ss_pred             CCCCcEEEcccCCCCC--c----cccccCCCcccEEEccCCCCCC---CccchhhcCCCCCCEEeccCCCCCCC--ch--
Q 012694          288 MRSLKYLDAHFNELHG--L----PRAIGKLTRLEVLNLSSNFNDL---TELPETIGDLINLRELDLSNNQIRAL--PD--  354 (458)
Q Consensus       288 l~~L~~L~l~~n~l~~--l----~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~l~~l--~~--  354 (458)
                      -.+|+.+.+..|.|..  +    -..+..+.+|++|+|..|....   ..+...+...+.|+.|.+.+|-++.-  ..  
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            3578999999998865  1    2345567899999999983321   12333455567789999999977722  12  


Q ss_pred             -hhh--CCCCCcEEECcCCCCCC
Q 012694          355 -TFF--RLENLTKLNLDQNPLVI  374 (458)
Q Consensus       355 -~l~--~l~~L~~L~L~~n~i~~  374 (458)
                       .+.  ..|+|..|...+|-+..
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcC
Confidence             222  25888999999887654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.40  E-value=4.3e-07  Score=79.29  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             CccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC--ccccCCCCCcEEEcc
Q 012694          220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDAH  297 (458)
Q Consensus       220 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l~  297 (458)
                      +...+|+++|.+..+ ..+..++.|.+|.+++|+|+.+...+...+++|..|.+.+|+|..+.  ..+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            455566666655544 34555666777777777777776666666777777777777777553  356778888888888


Q ss_pred             cCCCCCcc----ccccCCCcccEEEccC
Q 012694          298 FNELHGLP----RAIGKLTRLEVLNLSS  321 (458)
Q Consensus       298 ~n~l~~l~----~~l~~l~~L~~L~L~~  321 (458)
                      +|.++.-.    ..+..+++|+.||...
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            88887743    2467788888888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.38  E-value=8e-07  Score=87.33  Aligned_cols=135  Identities=23%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             hCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecC-CCCCCchhhcCCCCccEEEeeCC-CCCCCchhhcCCCCCcE
Q 012694          169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN-LLQSLPDSIGLLLNLKVLNVSGN-KLNTLPESIARCSSLVE  246 (458)
Q Consensus       169 ~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~  246 (458)
                      +..+.+++.|++++|.++.+|. +  -.+|++|.+++| .++.+|..+  .++|++|++++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            4456889999999999998872 2  246999999875 477777655  358999999998 7776664      5777


Q ss_pred             EEcCCCCCCcCCchhhccCCCCCEEeccCCc-C--ccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC
Q 012694          247 LDASFNNLVCLPTNIGYGLLNLERLSIKLNK-L--RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN  322 (458)
Q Consensus       247 L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l--~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n  322 (458)
                      |++..+.+..+..    -.++|+.|.+.++. .  ..++..  -.++|++|++++|....+|..+.  .+|+.|+++.|
T Consensus       117 L~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCccccc----CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            7777765443321    12356777775432 1  112211  12578889998888766665433  57888888765

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.35  E-value=2.9e-06  Score=83.47  Aligned_cols=135  Identities=21%  Similarity=0.325  Sum_probs=95.0

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccC-CCCccchhhcCCcccceeeeecC-CCCCCchhhcCCCCccE
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSN-LLQSLPDSIGLLLNLKV  223 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~  223 (458)
                      +..+..++.|++++|.++.+|. +  -.+|+.|.+++| .++.+|..+.  .+|++|++++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence            3345789999999999999982 2  247999999985 6777776553  68999999998 6777765      4777


Q ss_pred             EEeeCCCCC---CCchhhcCCCCCcEEEcCCCC-C--CcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcc
Q 012694          224 LNVSGNKLN---TLPESIARCSSLVELDASFNN-L--VCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH  297 (458)
Q Consensus       224 L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~-l--~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  297 (458)
                      |++.++...   .+|.      +|+.|.+.+++ .  ..++. .  -.++|+.|++++|....+|..+.  .+|+.|.++
T Consensus       117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH  185 (426)
T ss_pred             EEeCCCCCcccccCcc------hHhheecccccccccccccc-c--cCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence            888776543   4444      56677775432 1  11221 1  13679999999998777665554  589999998


Q ss_pred             cCCCC
Q 012694          298 FNELH  302 (458)
Q Consensus       298 ~n~l~  302 (458)
                      .+...
T Consensus       186 ~n~~~  190 (426)
T PRK15386        186 IEQKT  190 (426)
T ss_pred             ccccc
Confidence            77433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.9e-06  Score=57.16  Aligned_cols=37  Identities=32%  Similarity=0.563  Sum_probs=15.3

Q ss_pred             CCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC
Q 012694          174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS  210 (458)
Q Consensus       174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~  210 (458)
                      +|++|++++|+|+.+|+.+++|++|++|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            3444444444444444334444444444444444443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.20  E-value=2.2e-06  Score=74.95  Aligned_cols=103  Identities=22%  Similarity=0.303  Sum_probs=50.8

Q ss_pred             CCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhc-CCCCccEEEeeCCCCCCCc--hhhcCCCCCcEEEcC
Q 012694          174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTLP--ESIARCSSLVELDAS  250 (458)
Q Consensus       174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~  250 (458)
                      +...++|++|.+..++ .|..++.|.+|.+.+|+|+.+...+. .+++|+.|.+.+|.|.++.  ..+.           
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-----------  110 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-----------  110 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc-----------
Confidence            3444555555554442 34455555555555555555533332 2344555555555444332  1223           


Q ss_pred             CCCCCcCCchhhccCCCCCEEeccCCcCccCC----ccccCCCCCcEEEcccCCC
Q 012694          251 FNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP----PSICEMRSLKYLDAHFNEL  301 (458)
Q Consensus       251 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~----~~l~~l~~L~~L~l~~n~l  301 (458)
                                   .+|.|++|.+-+|.++.-.    ..+..+++|+.||..+-..
T Consensus       111 -------------~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  111 -------------SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             -------------cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence                         3445555555555444222    2456677777777665433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=1.9e-06  Score=57.10  Aligned_cols=38  Identities=42%  Similarity=0.658  Sum_probs=23.6

Q ss_pred             ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCC
Q 012694          197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL  234 (458)
Q Consensus       197 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  234 (458)
                      +|++|++++|+|+++|..++++++|++|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            56666666666666665566666666666666666654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=3.1e-06  Score=89.86  Aligned_cols=150  Identities=24%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             CCCccEEEeeCCCCC--CCchhhcC-CCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCCccccCCCCCcE
Q 012694          218 LLNLKVLNVSGNKLN--TLPESIAR-CSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY  293 (458)
Q Consensus       218 l~~L~~L~l~~n~l~--~l~~~l~~-l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~  293 (458)
                      -.+|++|+++|...-  .-+..++. +|+|+.|.+++-.+..-. ...+.++|+|..||+++++++.+ .++..+++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            468999999986322  23344444 799999999987665322 34566899999999999999988 78899999999


Q ss_pred             EEcccCCCCCcc--ccccCCCcccEEEccCCCCCCCc-cc----hhhcCCCCCCEEeccCCCCCC-C-chhhhCCCCCcE
Q 012694          294 LDAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTE-LP----ETIGDLINLRELDLSNNQIRA-L-PDTFFRLENLTK  364 (458)
Q Consensus       294 L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~-l~----~~l~~l~~L~~L~L~~n~l~~-l-~~~l~~l~~L~~  364 (458)
                      |.+.+=.+..-.  ..+.++++|+.||+|........ +.    +.-..+++|+.||.|++.+.. + ...+..-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            998887776622  34678999999999975222111 21    222458999999999888772 2 223334456665


Q ss_pred             EECc
Q 012694          365 LNLD  368 (458)
Q Consensus       365 L~L~  368 (458)
                      +.+-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            5533

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=8.1e-06  Score=86.75  Aligned_cols=131  Identities=22%  Similarity=0.238  Sum_probs=85.8

Q ss_pred             CCCceeEEEecCCCCC--ccchhh-CCCCCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCCCchhhcCCCCcc
Q 012694          148 SGVVVETVDLADRQLK--LLPEAF-GRLRGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLK  222 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~--~l~~~~-~~l~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~  222 (458)
                      ...+|+.|+++|...-  .-+..+ ..+|+|+.|.+.+-.+.  ++.....++++|..||+|+++++.+ .+++++++|+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            3456888888875432  112222 34688888888876554  2234456788888888888888887 6788888888


Q ss_pred             EEEeeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCc------hhhccCCCCCEEeccCCcCc
Q 012694          223 VLNVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPT------NIGYGLLNLERLSIKLNKLR  279 (458)
Q Consensus       223 ~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~  279 (458)
                      .|.+.+=.+..-.  ..+.++++|+.||+|.......+.      ..+..+|+|+.|+.+++.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8888776655321  366778888888888765443221      12224667777777766554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=1.3e-06  Score=79.96  Aligned_cols=110  Identities=21%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             hhHHHHHHhccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc--hh
Q 012694          137 EDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP--DS  214 (458)
Q Consensus       137 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~  214 (458)
                      +.++..-.......+++.|++.||++..+. ...+++.|++|.|+-|+|+.+. .+..|++|++|+|..|.|.++.  ..
T Consensus         6 e~mV~~raK~sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y   83 (388)
T KOG2123|consen    6 ESMVYIRAKCSDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY   83 (388)
T ss_pred             HHHHHHHHHhhHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH
Confidence            334444444445677889999999998773 4567899999999999999884 5889999999999999998874  35


Q ss_pred             hcCCCCccEEEeeCCCCCC-C-----chhhcCCCCCcEEE
Q 012694          215 IGLLLNLKVLNVSGNKLNT-L-----PESIARCSSLVELD  248 (458)
Q Consensus       215 l~~l~~L~~L~l~~n~l~~-l-----~~~l~~l~~L~~L~  248 (458)
                      +.++++|+.|.|..|.-.. -     ...+.-+++|+.||
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6889999999998885441 1     12455677777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=3.4e-05  Score=70.39  Aligned_cols=104  Identities=27%  Similarity=0.265  Sum_probs=62.2

Q ss_pred             hCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecC--CCC-CCchhhcCCCCccEEEeeCCCCCCCc--hhhcCCCC
Q 012694          169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN--LLQ-SLPDSIGLLLNLKVLNVSGNKLNTLP--ESIARCSS  243 (458)
Q Consensus       169 ~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n--~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~  243 (458)
                      ...+..|+.|.+.+..++.+ ..+..+++|++|.++.|  .+. .++.....+++|++|++++|++..+.  ..+..+.+
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34455666666777666655 34667778888888888  333 34334455688888888888776431  23455666


Q ss_pred             CcEEEcCCCCCCcCC---chhhccCCCCCEEec
Q 012694          244 LVELDASFNNLVCLP---TNIGYGLLNLERLSI  273 (458)
Q Consensus       244 L~~L~l~~n~l~~l~---~~~~~~l~~L~~L~L  273 (458)
                      |..|++.+|..+.+.   ..+|.-+++|++|+-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            777777776655433   233434555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=5.1e-05  Score=69.22  Aligned_cols=104  Identities=33%  Similarity=0.372  Sum_probs=68.6

Q ss_pred             cCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCC--CCC-ccccccCCCcccEEEccCCCCC-CCccchhhcCCCCC
Q 012694          264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE--LHG-LPRAIGKLTRLEVLNLSSNFND-LTELPETIGDLINL  339 (458)
Q Consensus       264 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~--l~~-l~~~l~~l~~L~~L~L~~n~~~-~~~l~~~l~~l~~L  339 (458)
                      .+..|+.|++.+..++++ ..+..+++|++|.++.|.  +.. ++.....+++|++|++++|.+. +..+ ..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcch
Confidence            345566666666666655 345567788888888883  333 4445566688888888888555 2333 335667788


Q ss_pred             CEEeccCCCCCCCc----hhhhCCCCCcEEECcC
Q 012694          340 RELDLSNNQIRALP----DTFFRLENLTKLNLDQ  369 (458)
Q Consensus       340 ~~L~L~~n~l~~l~----~~l~~l~~L~~L~L~~  369 (458)
                      ..|++.+|..+.+-    ..+.-+++|++|+-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            88888888777552    3556678888776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=1.1e-05  Score=73.93  Aligned_cols=79  Identities=24%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc--ccccCCCcccEEE
Q 012694          241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLN  318 (458)
Q Consensus       241 l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~  318 (458)
                      +.+.+.|++.+|.+..|.  +...++.|+.|.|+-|+|+++ ..+..|++|++|.|..|.|.++.  ..+.++++|+.|+
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            345556666666666553  333566677777777766666 45566666677777666666654  2456666666666


Q ss_pred             ccCC
Q 012694          319 LSSN  322 (458)
Q Consensus       319 L~~n  322 (458)
                      |..|
T Consensus        95 L~EN   98 (388)
T KOG2123|consen   95 LDEN   98 (388)
T ss_pred             hccC
Confidence            6666

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.36  E-value=0.00058  Score=56.73  Aligned_cols=102  Identities=18%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCc-hhhcCCCCC
Q 012694          168 AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP-ESIARCSSL  244 (458)
Q Consensus       168 ~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L  244 (458)
                      .|..+.+|+.+.+.. .+..++ ..|.++.+|+.+.+..+ +..++. .+.++++|+.+.+.+ .+..++ ..+..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344444555555443 333343 23444445555555442 443322 334444455555433 222222 123334444


Q ss_pred             cEEEcCCCCCCcCCchhhccCCCCCEEecc
Q 012694          245 VELDASFNNLVCLPTNIGYGLLNLERLSIK  274 (458)
Q Consensus       245 ~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~  274 (458)
                      +.+++..+ +..++...+.++ +|+.+.+.
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            44444432 344444444333 44444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.34  E-value=0.00076  Score=56.02  Aligned_cols=116  Identities=22%  Similarity=0.375  Sum_probs=66.8

Q ss_pred             CCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEE
Q 012694          148 SGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVL  224 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L  224 (458)
                      .+.+|+.+.+.. .+..++. .|..+.+|+.+.+.++ +..++ ..|.++++|+.+.+.+ .+..++ ..+..+++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            456899999985 5777765 7888989999999885 77776 4588888999999976 565554 456779999999


Q ss_pred             EeeCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCC
Q 012694          225 NVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLE  269 (458)
Q Consensus       225 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~  269 (458)
                      .+..+ +..++. .+.++ +|+.+.+.. .+..++...+.++++|+
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            99775 666643 56666 999999886 77788888887777764

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.28  E-value=2.4e-06  Score=86.97  Aligned_cols=110  Identities=28%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             CCCCCEEeccCCcCcc-----CCccccCCCC-CcEEEcccCCCCC-----ccccccCC-CcccEEEccCCCCCC---Ccc
Q 012694          265 LLNLERLSIKLNKLRT-----FPPSICEMRS-LKYLDAHFNELHG-----LPRAIGKL-TRLEVLNLSSNFNDL---TEL  329 (458)
Q Consensus       265 l~~L~~L~L~~n~l~~-----l~~~l~~l~~-L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~L~~n~~~~---~~l  329 (458)
                      ..++++|.+..|.++.     +...+...++ ++.|++..|.+.+     +.+.+..+ ..+++++++.|.+.-   ..+
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            4456666666665551     1223444444 6667777777765     23445555 567777777773221   223


Q ss_pred             chhhcCCCCCCEEeccCCCCCCCc-----hhhhCCCCCcEEECcCCCCCC
Q 012694          330 PETIGDLINLRELDLSNNQIRALP-----DTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       330 ~~~l~~l~~L~~L~L~~n~l~~l~-----~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      .+.+..+..++.+.+++|.+..-.     ..+.....+..+.+.++....
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  332 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGT  332 (478)
T ss_pred             HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccc
Confidence            445556667777777777776321     233344555566666544433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.20  E-value=3.4e-05  Score=74.63  Aligned_cols=82  Identities=20%  Similarity=0.151  Sum_probs=51.7

Q ss_pred             CCCceeEEEecCCC-CC--ccchhhCCCCCCcEEEcccC-CCCccc-h-hhcCCcccceeeeecCC-CCC--CchhhcCC
Q 012694          148 SGVVVETVDLADRQ-LK--LLPEAFGRLRGLVSLNLSRN-LLEAMP-D-SIAGLQKLEELDVSSNL-LQS--LPDSIGLL  218 (458)
Q Consensus       148 ~~~~L~~L~l~~~~-l~--~l~~~~~~l~~L~~L~l~~n-~i~~l~-~-~l~~l~~L~~L~L~~n~-l~~--l~~~l~~l  218 (458)
                      .+++++.|.+.++. ++  .+-..-..+++|++|++..| .|+... . --..+++|++|+++++. |++  +.....++
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            57888888888875 33  11122335788999999885 566331 2 23578889999998875 443  32334555


Q ss_pred             CCccEEEeeCC
Q 012694          219 LNLKVLNVSGN  229 (458)
Q Consensus       219 ~~L~~L~l~~n  229 (458)
                      ..++.+.+.||
T Consensus       242 ~~l~~~~~kGC  252 (483)
T KOG4341|consen  242 KELEKLSLKGC  252 (483)
T ss_pred             hhhhhhhhccc
Confidence            66666666655

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.86  E-value=2.9e-05  Score=79.16  Aligned_cols=93  Identities=29%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             CCCCCcEEEcccCCCCC-----ccccccCCCc-ccEEEccCCCCCCC---ccchhhcCC-CCCCEEeccCCCCC-----C
Q 012694          287 EMRSLKYLDAHFNELHG-----LPRAIGKLTR-LEVLNLSSNFNDLT---ELPETIGDL-INLRELDLSNNQIR-----A  351 (458)
Q Consensus       287 ~l~~L~~L~l~~n~l~~-----l~~~l~~l~~-L~~L~L~~n~~~~~---~l~~~l~~l-~~L~~L~L~~n~l~-----~  351 (458)
                      ...++++|.+++|.++.     +...+...+. +..|++..|..+..   .+...+..+ ..++.++++.|.|+     .
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            34456666666666554     2223444444 55566666522211   122233334 45566666666665     2


Q ss_pred             CchhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694          352 LPDTFFRLENLTKLNLDQNPLVIPPMEI  379 (458)
Q Consensus       352 l~~~l~~l~~L~~L~L~~n~i~~~~~~~  379 (458)
                      +...+..++.++++.++.|++.......
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~~~~~~  309 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTDYGVEL  309 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCccccHHHHH
Confidence            2344555566666666666666544333

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.65  E-value=0.00031  Score=68.17  Aligned_cols=223  Identities=22%  Similarity=0.135  Sum_probs=131.0

Q ss_pred             CCCceeEEEecCC-CCCc--cchhhCCCCCCcEEEcccC-CCCc--cchhhcCCcccceeeeecCCCCC---CchhhcCC
Q 012694          148 SGVVVETVDLADR-QLKL--LPEAFGRLRGLVSLNLSRN-LLEA--MPDSIAGLQKLEELDVSSNLLQS---LPDSIGLL  218 (458)
Q Consensus       148 ~~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~n-~i~~--l~~~l~~l~~L~~L~L~~n~l~~---l~~~l~~l  218 (458)
                      .+++++.|++..| .++.  +-.....+++|++|+++.+ .|+.  +-..+.++..++.+.+.+|.=..   +-..-..+
T Consensus       188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~  267 (483)
T KOG4341|consen  188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC  267 (483)
T ss_pred             hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence            5788999999885 4552  2223456889999999988 4442  33345677777877777653111   11111334


Q ss_pred             CCccEEEeeCC-CCCCC--chhhcCCCCCcEEEcCCCC-CCcCC-chhhccCCCCCEEeccCCc-CccC--CccccCCCC
Q 012694          219 LNLKVLNVSGN-KLNTL--PESIARCSSLVELDASFNN-LVCLP-TNIGYGLLNLERLSIKLNK-LRTF--PPSICEMRS  290 (458)
Q Consensus       219 ~~L~~L~l~~n-~l~~l--~~~l~~l~~L~~L~l~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~-l~~l--~~~l~~l~~  290 (458)
                      ..+..+++..| .++..  -..-..+..|+.|+.+++. ++... ..+..+..+|+.|-+..++ ++..  ..--.+.+.
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            45666665555 34422  1222346777888877764 33222 2344567788888887774 2211  111235667


Q ss_pred             CcEEEcccCCCCC---ccccccCCCcccEEEccCCCCCCCc-----cchhhcCCCCCCEEeccCCCCC--CCchhhhCCC
Q 012694          291 LKYLDAHFNELHG---LPRAIGKLTRLEVLNLSSNFNDLTE-----LPETIGDLINLRELDLSNNQIR--ALPDTFFRLE  360 (458)
Q Consensus       291 L~~L~l~~n~l~~---l~~~l~~l~~L~~L~L~~n~~~~~~-----l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~  360 (458)
                      |+.+++..+....   +-..-.+++.|++|.++.|. .++.     +...-.....|+.+.|+++...  ..-..+..++
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce-~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE-LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhh-hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            8888877775433   22233467788888888762 1221     1222345677888888888544  2235677788


Q ss_pred             CCcEEECcCCC
Q 012694          361 NLTKLNLDQNP  371 (458)
Q Consensus       361 ~L~~L~L~~n~  371 (458)
                      +|+.+++-+++
T Consensus       427 ~Leri~l~~~q  437 (483)
T KOG4341|consen  427 NLERIELIDCQ  437 (483)
T ss_pred             ccceeeeechh
Confidence            88888887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.39  E-value=0.00086  Score=69.00  Aligned_cols=105  Identities=26%  Similarity=0.273  Sum_probs=45.3

Q ss_pred             CCceeEEEecCC-CCCc--cchhhCCCCCCcEEEcccC--CCCccc----hhhcCCcccceeeeecCC-CCCCc-hhh-c
Q 012694          149 GVVVETVDLADR-QLKL--LPEAFGRLRGLVSLNLSRN--LLEAMP----DSIAGLQKLEELDVSSNL-LQSLP-DSI-G  216 (458)
Q Consensus       149 ~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~n--~i~~l~----~~l~~l~~L~~L~L~~n~-l~~l~-~~l-~  216 (458)
                      .+.++.|.+.++ .+..  +-.....+++|+.|+++++  .++..+    .....+.+|+.|+++.+. +++.. ..+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            345555555544 2222  2233444555555555542  111111    122334555555555554 44321 111 2


Q ss_pred             CCCCccEEEeeCCC-CC--CCchhhcCCCCCcEEEcCCCC
Q 012694          217 LLLNLKVLNVSGNK-LN--TLPESIARCSSLVELDASFNN  253 (458)
Q Consensus       217 ~l~~L~~L~l~~n~-l~--~l~~~l~~l~~L~~L~l~~n~  253 (458)
                      .+++|++|.+.++. ++  .+......++.|++|+++.|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            24555555554443 33  222233345555555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.05  E-value=0.001  Score=68.43  Aligned_cols=34  Identities=29%  Similarity=0.236  Sum_probs=18.1

Q ss_pred             CCCCcEEEcccC-CCCc--cchhhcCCcccceeeeec
Q 012694          172 LRGLVSLNLSRN-LLEA--MPDSIAGLQKLEELDVSS  205 (458)
Q Consensus       172 l~~L~~L~l~~n-~i~~--l~~~l~~l~~L~~L~L~~  205 (458)
                      ++.|+.|.+.++ .++.  +-.....+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            455666666555 3443  323445556666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.48  E-value=0.0041  Score=34.33  Aligned_cols=20  Identities=45%  Similarity=0.760  Sum_probs=12.1

Q ss_pred             CCCEEeccCCCCCCCchhhh
Q 012694          338 NLRELDLSNNQIRALPDTFF  357 (458)
Q Consensus       338 ~L~~L~L~~n~l~~l~~~l~  357 (458)
                      +|++|++++|+|+.+|..++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35666666666666665444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.21  E-value=0.0079  Score=33.15  Aligned_cols=10  Identities=50%  Similarity=0.474  Sum_probs=3.6

Q ss_pred             EEEcccCCCC
Q 012694          177 SLNLSRNLLE  186 (458)
Q Consensus       177 ~L~l~~n~i~  186 (458)
                      +|++++|+++
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.97  E-value=0.00087  Score=60.24  Aligned_cols=85  Identities=22%  Similarity=0.185  Sum_probs=64.6

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  227 (458)
                      ..+..+.||++.|++-.+...|+.++.|..|+++.|.|..+|..++.+..++.+++..|..+..|-+++..++++++++.
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence            45667788888887776666677777777888888877777777777777777777777777777777777888887777


Q ss_pred             CCCCC
Q 012694          228 GNKLN  232 (458)
Q Consensus       228 ~n~l~  232 (458)
                      +|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            77654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.69  E-value=0.00078  Score=60.54  Aligned_cols=88  Identities=18%  Similarity=0.199  Sum_probs=78.4

Q ss_pred             hhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEE
Q 012694          168 AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVEL  247 (458)
Q Consensus       168 ~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L  247 (458)
                      .+......+.|+++.|++..+...|..++.|..|+++.|++..+|..++.+..++.+++..|..+..|.++...+.++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            45667888999999999888877788889999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCC
Q 012694          248 DASFNNLV  255 (458)
Q Consensus       248 ~l~~n~l~  255 (458)
                      +.-.|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99888765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.43  E-value=0.023  Score=29.10  Aligned_cols=15  Identities=67%  Similarity=0.979  Sum_probs=6.5

Q ss_pred             CCCEEeccCCCCCCC
Q 012694          338 NLRELDLSNNQIRAL  352 (458)
Q Consensus       338 ~L~~L~L~~n~l~~l  352 (458)
                      +|+.|++++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555544

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.70  E-value=0.042  Score=28.13  Aligned_cols=11  Identities=45%  Similarity=0.842  Sum_probs=3.1

Q ss_pred             ccEEEeeCCCC
Q 012694          221 LKVLNVSGNKL  231 (458)
Q Consensus       221 L~~L~l~~n~l  231 (458)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.66  E-value=0.24  Score=28.27  Aligned_cols=21  Identities=43%  Similarity=0.433  Sum_probs=11.0

Q ss_pred             CCCcEEEcCCCCCCcCCchhh
Q 012694          242 SSLVELDASFNNLVCLPTNIG  262 (458)
Q Consensus       242 ~~L~~L~l~~n~l~~l~~~~~  262 (458)
                      ++|+.|++++|.++.+|.+.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.66  E-value=0.24  Score=28.27  Aligned_cols=21  Identities=43%  Similarity=0.433  Sum_probs=11.0

Q ss_pred             CCCcEEEcCCCCCCcCCchhh
Q 012694          242 SSLVELDASFNNLVCLPTNIG  262 (458)
Q Consensus       242 ~~L~~L~l~~n~l~~l~~~~~  262 (458)
                      ++|+.|++++|.++.+|.+.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.54  E-value=0.38  Score=27.38  Aligned_cols=16  Identities=81%  Similarity=1.178  Sum_probs=8.1

Q ss_pred             CCCEEeccCCCCCCCc
Q 012694          338 NLRELDLSNNQIRALP  353 (458)
Q Consensus       338 ~L~~L~L~~n~l~~l~  353 (458)
                      +|+.|+|++|+|+.+|
T Consensus         3 ~L~~L~L~~N~l~~lp   18 (26)
T smart00370        3 NLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCEEECCCCcCCcCC
Confidence            4455555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.54  E-value=0.38  Score=27.38  Aligned_cols=16  Identities=81%  Similarity=1.178  Sum_probs=8.1

Q ss_pred             CCCEEeccCCCCCCCc
Q 012694          338 NLRELDLSNNQIRALP  353 (458)
Q Consensus       338 ~L~~L~L~~n~l~~l~  353 (458)
                      +|+.|+|++|+|+.+|
T Consensus         3 ~L~~L~L~~N~l~~lp   18 (26)
T smart00369        3 NLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCEEECCCCcCCcCC
Confidence            4455555555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.27  E-value=0.11  Score=46.17  Aligned_cols=80  Identities=23%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             CCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCcc-chhhc-CCCCCCEEeccCC-CCCCC-chhhhCCCCCcE
Q 012694          290 SLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIG-DLINLRELDLSNN-QIRAL-PDTFFRLENLTK  364 (458)
Q Consensus       290 ~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~-~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~  364 (458)
                      .++.++-+++.|.... +.+..++.++.|.+.+| ..+.+. -+-++ -.++|+.|++++| +||+- -.++..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            4566666666665532 44666677777777766 122211 01122 3468888888887 78744 256777888888


Q ss_pred             EECcCC
Q 012694          365 LNLDQN  370 (458)
Q Consensus       365 L~L~~n  370 (458)
                      |.|.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            887653

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.41  E-value=0.83  Score=26.18  Aligned_cols=18  Identities=50%  Similarity=0.872  Sum_probs=13.9

Q ss_pred             CCCCEEeccCCCCCCCch
Q 012694          337 INLRELDLSNNQIRALPD  354 (458)
Q Consensus       337 ~~L~~L~L~~n~l~~l~~  354 (458)
                      .+|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367888888888888874

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.96  E-value=0.29  Score=43.49  Aligned_cols=63  Identities=29%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             cccCCCCCcEEEcccCCCC-C--ccccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCC
Q 012694          284 SICEMRSLKYLDAHFNELH-G--LPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNN  347 (458)
Q Consensus       284 ~l~~l~~L~~L~l~~n~l~-~--l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n  347 (458)
                      .+.+++.++.|.+.+|.-- +  +...-+-.++|+.|+|++|. .+++- ..++..+++|+.|.+.+=
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~-rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP-RITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC-eechhHHHHHHHhhhhHHHHhcCc
Confidence            3445555555555555321 1  11111134677777777772 23321 245666777777766553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.50  E-value=0.42  Score=26.64  Aligned_cols=15  Identities=33%  Similarity=0.474  Sum_probs=8.1

Q ss_pred             CCCcEEECcCCCCCC
Q 012694          360 ENLTKLNLDQNPLVI  374 (458)
Q Consensus       360 ~~L~~L~L~~n~i~~  374 (458)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            566666666666653

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-17
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-13
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-12
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-10
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-10
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		2e-08
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-08
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		4e-08
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-08
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		9e-08
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		1e-07
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-07
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-07
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-07
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-07
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		4e-07
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		4e-07
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		5e-07
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		5e-07
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		5e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		4e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		8e-05
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-04
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		2e-04
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		3e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		4e-04
3cvr_A	571	Crystal Structure Of The Full Length Ipah3 Length =		4e-04
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		4e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		4e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		5e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		6e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		6e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		6e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		6e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		6e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		8e-04

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 22/253 (8%)
Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
           S++ S   L A+P +I    K  +LD+ SN L SLP  +   L  L++L ++ NKL TLP
Sbjct: 20  SVDCSSKKLTAIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 236 ESIAR-CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKY 293
             I +   +L  L  + N L  LP  +   L+NL  L +  N+L++ PP + + +  L Y
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 294 LDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRA 351
           L   +NEL  LP+ +  KLT L+ L L +  N L  +PE   D L  L+ L L NNQ++ 
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYN--NQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 352 LPDTFF-RLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGII-------AEAQ 403
           +P+  F  LE L  L L +N     P +    G+  + +++ K+ D  +        E  
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN-----PWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKG 250
Query: 404 QKSILEANKQQQA 416
            K++LE  ++  A
Sbjct: 251 GKAVLEITEKDAA 263

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%)
Query: 215 IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIK 274
           I  L N++ L + GNKL+ +  ++   ++L  L  + N L  LP  +   L NL+ L + 
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 275 LNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPET 332
            N+L++ P  + + + +L YL+   N+L  LP+ +  KLT L  L+LS  +N L  LPE 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS--YNQLQSLPEG 175
Query: 333 IGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
           + D L  L++L L  NQ++++PD  F RL +L  + L  N     P +    G+  + E+
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-----PWDCTCPGIRYLSEW 230
Query: 391 MAKR 394
           + K 
Sbjct: 231 INKH 234

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 199 EELDVSSNLLQSLPDSI---GLLLNLKVLNVSG----NKLNTLPESIARCSSLVELDASF 251
           E + VS+ + Q  PD      +  NLK  +V+     N+LN++ + IA  S +     S 
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDI----KSV 56
Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI-GK 310
             +  LP        N+  L++  NKL     ++ E+ +L YL    N+L  LP  +  K
Sbjct: 57  QGIQYLP--------NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK 107
Query: 311 LTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLD 368
           LT L+ L L  N   L  LP+ + D L NL  L L +NQ+++LP   F +L NLT+L+LD
Sbjct: 108 LTNLKELVLVEN--QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 369 QNPLVIPPMEIVNK 382
            N L   P  + +K
Sbjct: 166 NNQLQSLPEGVFDK 179

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
           G V+L L    L   PD    L  L+   + +  L  LPD+      L+ L ++ N L  
Sbjct: 82  GRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRA 141
Query: 234 LPESIARCSSLVELD-ASFNNLVCLPTNIG--------YGLLNLERLSIKLNKLRTFPPS 284
           LP SIA  + L EL   +   L  LP  +          GL+NL+ L ++   +R+ P S
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 285 ICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDL 344
           I  +++LK L    + L  L  AI  L +LE L+L      L   P   G    L+ L L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALRNYPPIFGGRAPLKRLIL 260
Query: 345 SN-NQIRALPDTFFRLENLTKLNL 367
            + + +  LP    RL  L KL+L
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDL 284

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
            + L +L+  +I    L   P +  +   L+ L    N L  LP +I  L RL  L++ +
Sbjct: 100 AFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159
Query: 322 NFNDLTELPETIGD---------LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
              +LTELPE +           L+NL+ L L    IR+LP +   L+NL  L +  +PL
Sbjct: 160 -CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 373 V--------IPPMEIVN-KGVEAVKEF 390
                    +P +E ++ +G  A++ +
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNY 245

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 247 LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-EMRSLKYLDAHFNELHGLP 305
           LD   N+L  LP  +   L +L +L +  NKL++ P  +  ++ SL YL+   N+L  LP
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 306 RAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENL 362
             +  KLT+L+ L L  N N L  LP+ + D L  L++L L  NQ++++PD  F RL +L
Sbjct: 93  NGVFDKLTQLKELAL--NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 363 TKLNLDQNPLVIPPMEIVNKGVEAVKEFMAKRWDGII 399
             + L  N     P +    G+  + E++ K   G++
Sbjct: 151 QYIWLHDN-----PWDCTCPGIRYLSEWINKH-SGVV 181

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 123/263 (46%), Gaps = 22/263 (8%)
Query: 171 RLRGLVSLNLSRNLLEA-MPDSIAGLQ-KLEELDVSSNLLQS--LPDSIGLLLN----LK 222
           ++RGL  L+LS N     +P+S+  L   L  LD+SSN      LP+   L  N    L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN---LCQNPKNTLQ 397
Query: 223 VLNVSGNKL-NTLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLSIKLNKLRT 280
            L +  N     +P +++ CS LV L  SFN L   +P+++G  L  L  L + LN L  
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEG 456
Query: 281 -FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLI 337
             P  +  +++L+ L   FN+L G +P  +   T L  ++LS+  N LT E+P+ IG L 
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLE 514
Query: 338 NLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQNPL--VIPPMEIVNKGVEAVKEFMAKR 394
           NL  L LSNN     +P       +L  L+L+ N     IP       G  A      KR
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 395 WDGIIAEAQQKSILEANKQQQAQ 417
           +  I  +  +K    A    + Q
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQ 597

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 123/263 (46%), Gaps = 22/263 (8%)
Query: 171 RLRGLVSLNLSRNLLEA-MPDSIAGLQ-KLEELDVSSNLLQS--LPDSIGLLLN----LK 222
           ++RGL  L+LS N     +P+S+  L   L  LD+SSN      LP+   L  N    L+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN---LCQNPKNTLQ 394
Query: 223 VLNVSGNKL-NTLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLSIKLNKLRT 280
            L +  N     +P +++ CS LV L  SFN L   +P+++G  L  L  L + LN L  
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEG 453
Query: 281 -FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLI 337
             P  +  +++L+ L   FN+L G +P  +   T L  ++LS+  N LT E+P+ IG L 
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLE 511
Query: 338 NLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQNPL--VIPPMEIVNKGVEAVKEFMAKR 394
           NL  L LSNN     +P       +L  L+L+ N     IP       G  A      KR
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 395 WDGIIAEAQQKSILEANKQQQAQ 417
           +  I  +  +K    A    + Q
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQ 594

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 51/267 (19%)
Query: 119 EMLDRVYDSVSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSL 178
           E L  + +S   +++DV+ + +K L +    +  E +   + QL+ LPE    L  L ++
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL--EFIAAGNNQLEELPE-LQNLPFLTAI 200
Query: 179 NLSRNLLEAMPD-------SIAGLQKLEELD------------VSSNLLQSLPDSIGLLL 219
               N L+ +PD        +AG   LEEL               +NLL++LPD   L  
Sbjct: 201 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD---LPP 257
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDAS---FNNLVCLPTNIGYGLLNLERLSIKLN 276
           +L+ LNV  N L  LPE      SL  LD S   F+ L  LP N+ Y       L+   N
Sbjct: 258 SLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYY-------LNASSN 307
Query: 277 KLRTFPPSICEM-RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD 335
           ++R    S+C++  SL+ L+   N+L  LP    +L R     L ++FN L E+PE    
Sbjct: 308 EIR----SLCDLPPSLEELNVSNNKLIELPALPPRLER-----LIASFNHLAEVPELPQ- 357
Query: 336 LINLRELDLSNNQIRALPDTFFRLENL 362
             NL++L +  N +R  PD    +E+L
Sbjct: 358 --NLKQLHVEYNPLREFPDIPESVEDL 382

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 201 LDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLN---TLPESIARCSSLVELDASFNNLVC 256
           L++ SN LQSLP  +   L  L  L++S N L+      +S    +SL  LD SFN ++ 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 257 LPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLD-AHFNELHGLPRAIGKLTR 313
           + +N   GL  LE L  + + L+          +R+L YLD +H +           L+ 
Sbjct: 93  MSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQN 370
           LEVL ++ N      LP+   +L NL  LDLS  Q+  L P  F  L +L  LN+  N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDA 296
           +RCS S  E+  +   L  +PT I     +  RL ++ NKL++ P  + + +  L  L  
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSL 59
Query: 297 HFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD 354
             N++  LP  +  KLT+L +L L  N   L  LP  + D L  L+EL L  NQ++++PD
Sbjct: 60  SQNQIQSLPDGVFDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
Query: 355 TFF-RLENLTKLNLDQNP 371
             F RL +L K+ L  NP
Sbjct: 118 GIFDRLTSLQKIWLHTNP 135

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 265 LLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSN 322
           L+NL+ L +  N+L   P  + + +  L  LD   N+L  LP A+  +L  L+ L +  N
Sbjct: 63  LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 323 FNDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVN 381
              LTELP  I  L +L  L L  NQ++++P   F RL +LT   L  NP      +I+ 
Sbjct: 123 --KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMY 180
Query: 382 -KGVEAVKEFMAKRWDG 397
            +   A    +A RWDG
Sbjct: 181 LRNWVADHTSIAMRWDG 197

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           L+LS NLL     S+A L    +L +L++    L  L    G L  L  L++S N+L +L
Sbjct: 36  LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P       +L  LD SFN L  LP     GL  L+ L +K N+L+T PP           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
                   GL     KL +L + N     NDLTELP   +  L NL  L L  N +  +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
             FF    L    L  NP + 
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 28/211 (13%)
Query: 174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT 233
           GL+ L++  N L  +P   +GL KL    +  N L SLP    L   L+ L+VS N+L +
Sbjct: 102 GLLELSIFSNPLTHLPALPSGLCKLW---IFGNQLTSLPV---LPPGLQELSVSDNQLAS 155
Query: 234 LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293
           LP   A  S L +L A  N L  LP  +  GL   + LS+  N+L + P    E+  L  
Sbjct: 156 LP---ALPSELCKLWAYNNQLTSLPM-LPSGL---QELSVSDNQLASLPTLPSELYKLWA 208
Query: 294 LDAHFNELHGLPRAI-------GKLTRLEVL-----NLSSNFNDLTELPETIGDLINLRE 341
            +     L  LP  +        +LT L VL      L  + N LT LP     L++L  
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL-- 266
Query: 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
             +  NQ+  LP++   L + T +NL+ NPL
Sbjct: 267 -SVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
           V+   RQL  LP    +      L+LS NLL     S+A L    +L +L++    L  L
Sbjct: 15  VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
               G L  L  L++S N+L +LP       +L  LD SFN L  LP     GL  L+ L
Sbjct: 71  -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +K N+L+T PP                   GL     KL +L + N     N LTELP 
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
             +  L NL  L L  N +  +P  FF    L    L  NP + 
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
           V+   RQL  LP    +      L+LS NLL     S+A L    +L +L++    L  L
Sbjct: 15  VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
               G L  L  L++S N+L +LP       +L  LD SFN L  LP     GL  L+ L
Sbjct: 71  -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +K N+L+T PP                   GL     KL +L + N     N LTELP 
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
             +  L NL  L L  N +  +P  FF    L    L  NP + 
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
           V+   RQL  LP    +      L+LS NLL     S+A L    +L +L++    L  L
Sbjct: 15  VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
               G L  L  L++S N+L +LP       +L  LD SFN L  LP     GL  L+ L
Sbjct: 71  -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +K N+L+T PP                   GL     KL +L + N     N LTELP 
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
             +  L NL  L L  N +  +P  FF    L    L  NP
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 95/224 (42%), Gaps = 33/224 (14%)
Query: 155 VDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSL 211
           V+   RQL  LP    +      L+LS NLL     S+A L    +L +L++    L  L
Sbjct: 15  VNCDKRQLTALPPDLPK--DTTILHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL 70
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
               G L  L  L++S N+L +LP       +L  LD SFN L  LP     GL  L+ L
Sbjct: 71  -QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +K N+L+T PP                   GL     KL +L + N     N LTELP 
Sbjct: 130 YLKGNELKTLPP-------------------GLLTPTPKLEKLSLAN-----NQLTELPA 165
Query: 332 T-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
             +  L NL  L L  N +  +P  FF    L    L  NP + 
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           L+LS NLL     S+A L    +L +L++    L  L    G L  L  L++S N+L +L
Sbjct: 36  LHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P       +L  LD SFN L  LP     GL  L+ L +K N+L+T PP           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
                   GL     KL +L + N     N+LTELP   +  L NL  L L  N +  +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
             FF    L    L  NP + 
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           L+LS NLL     S+A L    +L +L++    L  L    G L  L  L++S N+L +L
Sbjct: 36  LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P       +L  LD SFN L  LP     GL  L+ L +K N+L+T PP           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
                   GL     KL +L + N     N+LTELP   +  L NL  L L  N +  +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
             FF    L    L  NP + 
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           L+LS NLL     S+A L    +L +L++    L  L    G L  L  L++S N+L +L
Sbjct: 36  LHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P       +L  LD SFN L  LP     GL  L+ L +K N+L+T PP           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
                   GL     KL +L + N     N+LTELP   +  L NL  L L  N +  +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
             FF    L    L  NP + 
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           L+LS NLL     S+A L    +L +L++    L  L    G L  L  L++S N+L +L
Sbjct: 36  LHLSENLLYTF--SLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSL 92
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P       +L  LD SFN L  LP     GL  L+ L +K N+L+T PP           
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 141
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
                   GL     KL +L + N     N+LTELP   +  L NL  L L  N +  +P
Sbjct: 142 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
             FF    L    L  NP + 
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLC 209

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 178 LNLSRNLLEAMPDSIAGLQ---KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL 234
           L+LS NLL     S+A L    +L +L++    L  L    G L  L  L++S N+L +L
Sbjct: 37  LHLSENLLYTF--SLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSL 93
Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           P       +L  LD SFN L  LP     GL  L+ L +K N+L+T PP           
Sbjct: 94  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----------- 142
Query: 295 DAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRALP 353
                   GL     KL +L + N     N+LTELP   +  L NL  L L  N +  +P
Sbjct: 143 --------GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Query: 354 DTFFRLENLTKLNLDQNPLVI 374
             FF    L    L  NP + 
Sbjct: 190 KGFFGSHLLPFAFLHGNPWLC 210

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 220 NLKVLNVSGNKLN---TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276
           +L+ L++S N L+      +S    +SL  LD SFN ++ + +N   GL  LE L  + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHS 406
Query: 277 KLRTFP--PSICEMRSLKYLD-AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETI 333
            L+          +R+L YLD +H +           L+ LEVL ++ N      LP+  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 334 GDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFMA 392
            +L NL  LDLS  Q+  L P  F  L +L  LN+  N L   P  I ++     K ++ 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 393 KR-WD 396
              WD
Sbjct: 527 TNPWD 531

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 9/187 (4%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR-CSSLVELDASFNNLVCL 257
           +E+D     L S+P   G+  + + L++    L TL ++  R  + L  L+  +N L  L
Sbjct: 17  KEVDCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
              +   L  L  L +  N+L + P  + + +  L  L    N+L  LP  +  +LT+L+
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 316 VLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLV 373
            L L  N N L  +P    D L NL+ L LS NQ++++P   F RL  L  + L  N   
Sbjct: 135 ELRL--NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Query: 374 IPPMEIV 380
               EI+
Sbjct: 193 CSRCEIL 199

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 30/223 (13%)
Query: 178 LNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP 235
           LNL  N ++ +  D+   L+ LE L +S NL++ +   +   L +L  L +  N+L T+P
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 236 -ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI-KLNKLRTFPPSICE-MRSLK 292
            ++    S L EL    N +  +P+     + +L RL + +L +L     +  E + +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSN---------FNDLTELPE------------ 331
           YL+     L  +P  +  L RLE L LS N         F  LT L +            
Sbjct: 160 YLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 332 --TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNP 371
                DL +L EL+LS+N + +LP D F  L  L +++L+ NP
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 30/223 (13%)
Query: 178 LNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP 235
           LNL  N ++ +  D+   L+ LE L +S NL++ +   +   L +L  L +  N+L T+P
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 236 -ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI-KLNKLRTFPPSICE-MRSLK 292
            ++    S L EL    N +  +P+     + +L RL + +L +L     +  E + +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSN---------FNDLTELPE------------ 331
           YL+     L  +P  +  L RLE L LS N         F  LT L +            
Sbjct: 160 YLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE 218
Query: 332 --TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNP 371
                DL +L EL+LS+N + +LP D F  L  L +++L+ NP
Sbjct: 219 RNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 220 NLKVLNVSGNKLN---TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276
           +L+ L++S N L+      +S    +SL  LD SFN ++ + +N   GL  LE L  + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHS 406
Query: 277 KLRTFP--PSICEMRSLKYLD-AHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETI 333
            L+          +R+L YLD +H +           L+ LEVL ++ N      LP+  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 334 GDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQN 370
            +L NL  LDLS  Q+  L P  F  L +L  LN+  N
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLD-AHFN 299
           SL  LD SFN ++ + +N   GL  LE L  + + L+          +R+L YLD +H +
Sbjct: 398 SLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 300 ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFR 358
                      L+ LEVL ++ N      LP+   +L NL  LDLS  Q+  L P  F  
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 359 LENLTKLNLDQN 370
           L +L  LN+  N
Sbjct: 517 LSSLQVLNMSHN 528

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 6/148 (4%)
Query: 141 KILQEAESGVVVET--VDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPDSI-AGLQ 196
           K L    SG+  +T  +DL    L  L +A F  L  L  LNL  N L+ +   +   L 
Sbjct: 24  KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 197 KLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNL 254
           +L  L +++N L SLP  +   L  L  L + GN+L +LP  +  R + L EL  + N L
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 255 VCLPTNIGYGLLNLERLSIKLNKLRTFP 282
             +P      L NL+ LS+  N+L++ P
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 9/187 (4%)
Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIAR-CSSLVELDASFNNLVCL 257
           +E+D     L S+P   G+  + + L++    L TL ++  R  + L  L+  +N L  L
Sbjct: 17  KEVDCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
              +   L  L  L +  N+L + P  + + +  L  L    N+L  LP  +  +LT+L+
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 316 VLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLV 373
            L L  N N L  +P    D L NL+ L LS NQ++++P   F RL  L  + L  N   
Sbjct: 135 ELRL--NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Query: 374 IPPMEIV 380
               E +
Sbjct: 193 CSRCETL 199

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 150 VVVETVDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNL 207
           +V+E  DL+      LP   F     L +L++S N LE + D +      L+ L +SSN 
Sbjct: 128 LVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 208 LQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN--NLVCLPTNIGYGL 265
           L  +   + L+ +L   NVS N L+TL   IA    + ELDAS N  N+V  P N+   +
Sbjct: 183 LTHV--DLSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTI 236
Query: 266 LNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFN 324
           L L+  ++         P + E+      D  +NEL   +     K+ RLE L +S+N  
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEV------DLSYNELEKIMYHPFVKMQRLERLYISNN-- 288
Query: 325 DLTELPETIGDLINLRELDLSNNQI----RALPDTFFRLENLTKLNLDQNPLV 373
            L  L      +  L+ LDLS+N +    R  P  F RLENL    LD N +V
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLY---LDHNSIV 337

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 35/227 (15%)
Query: 178 LNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLP 235
           L+L +N ++ +  D  A    LEEL+++ N++ ++ P +   L NL+ L +  N+L  +P
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 236 ESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI--------------KLNKLRT 280
             +    S+L +LD S N +V L   +   L NL+ L +               LN L  
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 281 FPPSICEMRSLKYLDAHFNELHGL--------------PRAIGKLTRLEVLNLSSNFNDL 326
                C + S+       + LHGL                +  +L RL+VL +S      
Sbjct: 157 LTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 327 TELPETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
           T  P  +  L NL  L +++  + A+P    R L  L  LNL  NP+
Sbjct: 215 TMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 169 FGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227
           F     L +L++S N LE + D +      L+ L +SSN L  +   + L+ +L   NVS
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVS 194
Query: 228 GNKLNTLPESIARCSSLVELDASFN--NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI 285
            N L+TL   IA    + ELDAS N  N+V  P N+   +L L+  ++         P +
Sbjct: 195 YNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 250
Query: 286 CEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDL 344
            E+      D  +NEL   +     K+ RLE L +S+N   L  L      +  L+ LDL
Sbjct: 251 VEV------DLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDL 302
Query: 345 SNNQI----RALPDTFFRLENLTKLNLDQNPLV 373
           S+N +    R  P  F RLENL    LD N +V
Sbjct: 303 SHNHLLHVERNQPQ-FDRLENLY---LDHNSIV 331

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 51/197 (25%)
Query: 248 DASFNNLVCLPTNIGYGLLN-------------------LERLSIKLNKLRTFPPSIC-- 286
           D  F ++VC P+   +  LN                   L+ L ++ N L+ F       
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 287 -EMRSLKYLDAHFNEL--HGLPRAIGKLTRLEVLNLSSNF-------------------- 323
             M SL+ LD   N L  H   R       + VLNLSSN                     
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHN 459
Query: 324 NDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPLVIPPMEIVNK 382
           N +  +P+ +  L  L+EL++++NQ++++PD  F RL +L  + L  N     P +    
Sbjct: 460 NRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN-----PWDCTCP 514
Query: 383 GVEAVKEFMAKRWDGII 399
           G+  + E++ K   G++
Sbjct: 515 GIRYLSEWINKH-SGVV 530

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 41/261 (15%)
Query: 151 VVETVDLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLL 208
            V+++DL++ ++  +  +   R   L +L L+ N +  +  DS + L  LE LD+S N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 209 QSLPDS-IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELD----ASFNNLVCLPTNIGY 263
            +L  S    L +L  LN+ GN   TL E+ +  S L +L      + +    +      
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 264 GLLNLERLSIKLNKLRTFPPS-----------ICEMR-----------------SLKYLD 295
           GL  LE L I  + L+++ P            I  M+                  L+  D
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231
Query: 296 AHFNELHGLPRAIGK----LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
              +  H    + G+    + +    N+      L ++ + +  +  L EL+ S NQ+++
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291
Query: 352 LPDTFF-RLENLTKLNLDQNP 371
           +PD  F RL +L K+ L  NP
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNP 312

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 299 NELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFR 358
           N L  LP  I  L+ L VL+LS N   LT LP  +G    L+     +N +  LP  F  
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Query: 359 LENLTKLNLDQNPL 372
           L NL  L ++ NPL
Sbjct: 315 LCNLQFLGVEGNPL 328

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 265 LLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
           L  L+R      +L   P ++  +MR+L +L+   N           L  LE +   SN 
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSN- 180
Query: 324 NDLTELPETI-GDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
             L ++P  I G +  L++L+L++NQ++++PD  F RL +L K+ L  NP
Sbjct: 181 -KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 160 RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219
           R ++   E    L+ L SL++SRN    MPDS    +K+  L++SS  ++ +   I    
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--Q 431
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
            L+VL+VS N L++    + R   L EL  S N L  LP    + +L +  + I  N+L+
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPR---LQELYISRNKLKTLPDASLFPVLLV--MKISRNQLK 486
Query: 280 TFPPSICE-MRSLKYLDAHFN 299
           + P  I + + SL+ +  H N
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTN 507

>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3 Length = 571

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 92/197 (46%), Gaps = 38/197 (19%)
Query: 195 LQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNL 254
           + +  EL ++   L SLPD   L   + VL ++ N L +LPE  A   SL  LDA  N L
Sbjct: 58  INQFSELQLNRLNLSSLPD--NLPPQITVLEITQNALISLPELPA---SLEYLDACDNRL 112
Query: 255 VCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDAHFNELHGLPRAIGKLT 312
             LP        +L+ L +  N+L   P  P++     L+Y++A  N+L  LP      T
Sbjct: 113 STLPELPA----SLKHLDVDNNQLTXLPELPAL-----LEYINADNNQLTXLPELP---T 160
Query: 313 RLEVLNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRALP------------DTFFRL 359
            LEVL++ +N    L ELPE+      L  LD+S N + +LP            + FFR 
Sbjct: 161 SLEVLSVRNNQLTFLPELPES------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 360 ENLTKLNLDQNPLVIPP 376
                 ++ +N L + P
Sbjct: 215 RENRITHIPENILSLDP 231

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 268 LERLSIKLNKLRTFP--PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND 325
           ++ + I  N L+TFP   S+ + + L  L+  +N+L G   A G   +L  LNL+  +N 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLA--YNQ 364
Query: 326 LTELPETI-GDLINLRELDLSNNQIRALPDTF 356
           +TE+P    G    +  L  ++N+++ +P+ F
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
           L+LS N L  +   S     +L+ LD+S   +Q++ D +   L +L  L ++GN + +L 
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 93
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
            ++   S L    +S   LV L TN+                L  FP  I  +++LK L+
Sbjct: 94  -ALGAFSGL----SSLQKLVALETNLA--------------SLENFP--IGHLKTLKELN 132
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
              N +    LP     LT LE L+LSSN            L ++P     L        
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 192
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
                    I L+EL L  NQ++++PD  F RL +L K+ L  NP
Sbjct: 193 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 160 RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219
           R ++   E    L+ L SL++SRN    MPDS    +K+  L++SS  ++ +   I    
Sbjct: 400 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--Q 457
Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
            L+VL+VS N L++    + R   L EL  S N L  LP    + +L +  + I  N+L+
Sbjct: 458 TLEVLDVSNNNLDSFSLFLPR---LQELYISRNKLKTLPDASLFPVLLV--MKIASNQLK 512
Query: 280 TFPPSICE-MRSLKYLDAHFN 299
           + P  I + + SL+ +  H N
Sbjct: 513 SVPDGIFDRLTSLQKIWLHTN 533

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Query: 114 FKEAEEMLDRVYDSVSAELVDVNED-VVKILQEAESGVV-VETVDLADRQL-KLLPEAFG 170
           FK+ +    +  ++   +  D+++  +  +L+   S    +E + LA  ++ K+   AF 
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 171 RLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSIGLLL-NLKVLNVSG 228
            L  L+ LNLS+N L ++   +   L KLE LD+S N +++L D   L L NLK L +  
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 229 NKLNTLPESIA-RCSSLVELDASFNNLVCLPTNIGY 263
           N+L ++P+ I  R +SL ++    N   C    I Y
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 222 KVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280
           K +++S N L  L   S +  S L  LD S   +  +     +GL +L  L +  N +++
Sbjct: 30  KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 281 FPP-SICEMRSLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
           F P S   + SL+ L A   +L  L    IG+L  L+ LN++ NF    +LP    +L N
Sbjct: 90  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 339 LRELDLSNNQIRAL 352
           L  +DLS N I+ +
Sbjct: 150 LVHVDLSYNYIQTI 163

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
           L+LS N L  +   S     +L+ LD+S   +Q++ D +   L +L  L ++GN + +L 
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 93
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
            ++   S L    +S   LV + TN+                L  FP  I  +++LK L+
Sbjct: 94  -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 132
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
              N +    LP     LT LE L+LSSN            L ++P     L        
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 192
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
                    I L+EL L  NQ++++PD  F RL +L K+ L  NP
Sbjct: 193 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
           L+LS N L  +   S     +L+ LD+S   +Q++ D +   L +L  L ++GN + +L 
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 92
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
            ++   S L    +S   LV + TN+                L  FP  I  +++LK L+
Sbjct: 93  -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 131
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
              N +    LP     LT LE L+LSSN            L ++P     L        
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 191
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
                    I L+EL L  NQ++++PD  F RL +L K+ L  NP
Sbjct: 192 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 222 KVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280
           K +++S N L  L   S +  S L  LD S   +  +     +GL +L  L +  N +++
Sbjct: 35  KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 281 FPP-SICEMRSLKYLDAHFNELHGLPRA-IGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
           F P S   + SL+ L A   +L  L    IG+L  L+ LN++ NF    +LP    +L N
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 339 LRELDLSNNQIRAL 352
           L  +DLS N I+ +
Sbjct: 155 LVHVDLSYNYIQTI 168

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 155 VDLAD-RQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL- 211
           +DL + ++L  + E AF  L  L  LNL+   L  +P+ +  L KL+ELD+S N L ++ 
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIR 223
Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
           P S   L++L+ L +  +++  +   +     SLVE++ + NNL  LP ++   L +LER
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283
Query: 271 LSIKLN 276
           + +  N
Sbjct: 284 IHLHHN 289

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 98/225 (43%), Gaps = 53/225 (23%)
Query: 178 LNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLP 235
           L+LS N L  +   S     +L+ LD+S   +Q++ D +   L +L  L ++GN + +L 
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 92
Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLD 295
            ++   S L    +S   LV + TN+                L  FP  I  +++LK L+
Sbjct: 93  -ALGAFSGL----SSLQKLVAVETNLA--------------SLENFP--IGHLKTLKELN 131
Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSN---------FNDLTELPETIGDL-------- 336
              N +    LP     LT LE L+LSSN            L ++P     L        
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 191
Query: 337 ---------INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
                    I L+EL L  NQ++++PD  F RL +L K+ L  NP
Sbjct: 192 FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-67
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-50
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-44
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-56
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-49
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-44
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-32
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-25
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-20
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-05

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  217 bits (554), Expect = 3e-67
 Identities = 69/239 (28%), Positives = 99/239 (41%), Gaps = 14/239 (5%)

Query: 156 DLADRQLKLLPEAFGRLR--GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD 213
               R LK   +        G V+L L    L   PD    L  L+ + + +  L  LPD
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 214 SIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNN-LVCLPTNIG--------YG 264
           ++     L+ L ++ N L  LP SIA  + L EL       L  LP  +          G
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
           L+NL+ L ++   +R+ P SI  +++LK L    + L  L  AI  L +LE L+L     
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC-T 240

Query: 325 DLTELPETIGDLINLRELDLSN-NQIRALPDTFFRLENLTKLNLDQNP-LVIPPMEIVN 381
            L   P   G    L+ L L + + +  LP    RL  L KL+L     L   P  I  
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  179 bits (457), Expect = 6e-53
 Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSS-NLLQSL 211
           + + +    L  LP+   +  GL +L L+RN L A+P SIA L +L EL + +   L  L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 212 PDSIG---------LLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIG 262
           P+ +           L+NL+ L +    + +LP SIA   +L  L    + L  L   I 
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226

Query: 263 YGLLNLERLSI-KLNKLRTFPPSICEMRSLKYLD-AHFNELHGLPRAIGKLTRLEVLNLS 320
             L  LE L +     LR +PP       LK L     + L  LP  I +LT+LE L+L 
Sbjct: 227 -HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 321 SNFNDLTELPETIGDLINLRELDLSNNQIRALPD 354
               +L+ LP  I  L     + +  +    L  
Sbjct: 286 GC-VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  171 bits (436), Expect = 7e-50
 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 19/231 (8%)

Query: 153 ETVDLAD-RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           E +       L+   +   + +   + + +R          A     +    +   L++ 
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS---AWRQANSNNPQIETRTGRALKAT 71

Query: 212 PDSIGLL--LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
            D +          L +    L   P+   R S L  +      L+ LP  +      LE
Sbjct: 72  ADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ-FAGLE 130

Query: 270 RLSIKLNKLRTFPPSICEMRSLKYLD-AHFNELHGLPRAIGK---------LTRLEVLNL 319
            L++  N LR  P SI  +  L+ L      EL  LP  +           L  L+ L L
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 320 SSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
              +  +  LP +I +L NL+ L + N+ + AL      L  L +L+L   
Sbjct: 191 E--WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  157 bits (399), Expect = 2e-44
 Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 162 LKLLPEAFGRLRGLVSLNLSR-NLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLN 220
           +           G  +L       L    D ++  Q+    D +               N
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN---RWHSAWRQANSNN 57

Query: 221 LKVLNVSGNKLNTLPESIARCSS--LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
            ++   +G  L    + +   +    V L+     L   P      L +L+ ++I    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGL 116

Query: 279 RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIG---- 334
              P ++ +   L+ L    N L  LP +I  L RL  L++ +   +LTELPE +     
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC-PELTELPEPLASTDA 175

Query: 335 -----DLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
                 L+NL+ L L    IR+LP +   L+NL  L +  +PL      I +
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLSR-NLLEAMPDSIAGLQKLEELDVSS-NLLQSLPD 213
            + +  L  L  A   L  L  L+L     L   P    G   L+ L +   + L +LP 
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 214 SIGLLLNLKVLNVSGN-KLNTLPESIARCSSLVELDASFNNLVCLPTN 260
            I  L  L+ L++ G   L+ LP  IA+  +   +    +    L  +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  171 bits (435), Expect = 9e-48
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 26/237 (10%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLL 218
           +  + LL E    +     L L+R  L ++PD++    ++  L+++ N L SLP+     
Sbjct: 47  NEAVSLLKECL--INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPA-- 100

Query: 219 LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
            +L+ L+   N+L+TLPE     +SL  LD   N L  LP         LE ++   N+L
Sbjct: 101 -SLEYLDACDNRLSTLPELP---ASLKHLDVDNNQLTMLPELPA----LLEYINADNNQL 152

Query: 279 RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
              P       SL+ L    N+L  LP     L  L   ++S+N   L  LP       +
Sbjct: 153 TMLPELPT---SLEVLSVRNNQLTFLPELPESLEAL---DVSTNL--LESLPAVPVRNHH 204

Query: 339 LRE----LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEFM 391
             E         N+I  +P+    L+    + L+ NPL     E +++         
Sbjct: 205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  155 bits (392), Expect = 1e-41
 Identities = 60/245 (24%), Positives = 93/245 (37%), Gaps = 22/245 (8%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             + L    L  LP+       +  L +++N L ++P+  A L+ L   D   N L +LP
Sbjct: 62  SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYL---DACDNRLSTLP 116

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
           +      +LK L+V  N+L  LPE     + L  ++A  N L  LP        +LE LS
Sbjct: 117 ELPA---SLKHLDVDNNQLTMLPELP---ALLEYINADNNQLTMLPELPT----SLEVLS 166

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF--NDLTELP 330
           ++ N+L   P       SL+ LD   N L  LP    +    E   +      N +T +P
Sbjct: 167 VRNNQLTFLPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP 223

Query: 331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGVEAVKEF 390
           E I  L     + L +N + +       L   T       P +   M    +        
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRI--RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

Query: 391 MAKRW 395
            A   
Sbjct: 282 DAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  129 bits (325), Expect = 1e-32
 Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 25/210 (11%)

Query: 176 VSLNLSRNLLEAMPDSIAG----LQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           +S N   N +              +K      + N   SL     L+     L ++   L
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC-LINQFSELQLNRLNL 71

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
           ++LP+++     +  L+ + N L+ LP        +LE L    N+L T P       SL
Sbjct: 72  SSLPDNL--PPQITVLEITQNALISLPELPA----SLEYLDACDNRLSTLPELPA---SL 122

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
           K+LD   N+L  LP     L  +       + N LT LPE      +L  L + NNQ+  
Sbjct: 123 KHLDVDNNQLTMLPELPALLEYINA-----DNNQLTMLPELPT---SLEVLSVRNNQLTF 174

Query: 352 LPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           LP+     E+L  L++  N L   P   V 
Sbjct: 175 LPEL---PESLEALDVSTNLLESLPAVPVR 201

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 25/217 (11%), Positives = 56/217 (25%), Gaps = 8/217 (3%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGL----VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLL 208
           E +D++   L+ LP    R        +      N +  +P++I  L     + +  N L
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 209 QSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
            S           +          ++ +           DA          +    + + 
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328
                  N    F   + +  S +       ++      +     L       +F    +
Sbjct: 303 FEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELR----QQSFAVAAD 358

Query: 329 LPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
             E+  D + L   +L    +           +   L
Sbjct: 359 ATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  168 bits (427), Expect = 3e-46
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 27/248 (10%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMPD--SIAGLQKLEELDVSSNLLQS--------LPD 213
           +     G    + +L+ + N L+ +P+      +  +  +D S N + S        L  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 214 SIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYG-------L 265
           +    +N+  +N+S N+++  P E  +  S L  ++   N L  +P N            
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 266 LNLERLSIKLNKLRTFPPSI--CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
             L  + ++ NKL           +  L  +D  +N     P      + L+   + +  
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 324 ND-----LTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378
           +      L E PE I    +L +L + +N IR + +      N++ L++  NP +   + 
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 379 IVNKGVEA 386
            V   +EA
Sbjct: 606 YVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (413), Expect = 3e-44
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 23/227 (10%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKV 223
           +  +  +++ L  L    N LE    +     KL  L+++ N +  +P +  G    ++ 
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 224 LNVSGNKLNTLPE--SIARCSSLVELDASFNNLVCLPTNIGYG-------LLNLERLSIK 274
           L+ + NKL  +P        S +  +D S+N +  +               +N+  +++ 
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 275 LNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR--------AIGKLTRLEVLNLSSNFND 325
            N++  FP  +      L  ++   N L  +P+               L  ++L  N   
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-- 499

Query: 326 LTELPETI--GDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
           LT+L +      L  L  +DLS N     P        L    +   
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (405), Expect = 5e-43
 Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 33/247 (13%)

Query: 161 QLKLLPEAFGRLRGLVSLNLSRNLLEAMPD---------SIAGLQKLEELDVSSNLLQSL 211
            L  LP     L  +  +N++ N   +                 +K++ + +  N L++ 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 212 --PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
               S+  +  L +L    N+L     +      L  L+ ++N +  +P N       +E
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 270 RLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHG--------LPRAIGKLTRLEVLNL 319
            LS   NKL+  P       +  +  +D  +NE+          L     K   +  +NL
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 320 SSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP--------DTFFRLENLTKLNLDQN 370
           S+  N +++ P E       L  ++L  N +  +P        + F     LT ++L  N
Sbjct: 441 SN--NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 371 PL-VIPP 376
            L  +  
Sbjct: 499 KLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  156 bits (397), Expect = 5e-42
 Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 19/231 (8%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI 215
                 +  + +A  RL  L    +  +      ++I    + E  +  +   ++     
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFV--AENICEAWENENSEY-AQQYKTEDLKW 245

Query: 216 GLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDASFNNLVCLPTNIGYG--------LL 266
             L +L  + V      T LP  +     +  ++ + N  +                   
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 267 NLERLSIKLNKLRTF--PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
            ++ + I  N L+TF    S+ +M+ L  L+  +N+L G   A G   +L  LNL+ N  
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ- 364

Query: 325 DLTELPETI-GDLINLRELDLSNNQIRALPDTFF--RLENLTKLNLDQNPL 372
            +TE+P    G    +  L  ++N+++ +P+ F    +  ++ ++   N +
Sbjct: 365 -ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (356), Expect = 2e-36
 Identities = 37/295 (12%), Positives = 78/295 (26%), Gaps = 66/295 (22%)

Query: 152 VETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSS 205
           V  + L        +P+A G+L  L  L L  +  +       P  I+     E+     
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 206 N---------------------------LLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI 238
                                         +S+  S  + L    +    N +  + +++
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 239 ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI--------------------KLNKL 278
            R + L +     +  V       +   N E                            L
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 279 RTFPPSICEMRSLKYLDAHFNELHGLPRA---------IGKLTRLEVLNLSSNFNDLTEL 329
              P  +  +  ++ ++   N      +               +++++ +  N  +L   
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN--NLKTF 320

Query: 330 --PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
               ++  +  L  L+   NQ+      F     L  LNL  N +   P      
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGF 375

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  126 bits (319), Expect = 2e-31
 Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 22/216 (10%)

Query: 157 LADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP--- 212
           +  +    L     +   + S+NLS N +   P +  +    L  +++  N+L  +P   
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 213 -----DSIGLLLNLKVLNVSGNKLNTLPESIA--RCSSLVELDASFNNLVCLPTNIGYGL 265
                ++      L  +++  NKL  L +         LV +D S+N+    PT      
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NS 535

Query: 266 LNLERLSIKLNK-------LRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLN 318
             L+   I+  +       LR +P  I    SL  L    N++  +   I     + VL+
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLD 593

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD 354
           +  N  +++     +   I      L  ++ + +  
Sbjct: 594 IKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (312), Expect = 1e-30
 Identities = 29/240 (12%), Positives = 70/240 (29%), Gaps = 39/240 (16%)

Query: 169 FGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-----SLPDSIGLLLNLK 222
                 +  L+L        +PD+I  L +LE L + S+  +       P  I   ++ +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 223 VLNVSGNKL-NTLPESIAR--CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
                      T  +   R   S L++   + +             L   ++    N + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 280 TFPPSICEMRSLKYLDAHFNELHG--------------------LPRAIGKLTRLEVLNL 319
               ++  +  L+      +                               L  L  + +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 320 SSNFNDLTELPETIGDLINLRELDLSNNQIRALPD---------TFFRLENLTKLNLDQN 370
            +   +LT+LP  +  L  ++ ++++ N+  +                 E +  + +  N
Sbjct: 257 YNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (297), Expect = 9e-29
 Identities = 28/219 (12%), Positives = 69/219 (31%), Gaps = 28/219 (12%)

Query: 191 SIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNVSGNKL-----NTLPESIARCSSL 244
           S+    ++  L +        +PD+IG L  L+VL +  +          P+ I+   S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 245 VELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNEL 301
            +      +     +  +      +L +  I  +  +     S         +    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 302 HGLPRAIGKLTRLEVLNLSSN------------------FNDLTELPETIGDLINLRELD 343
             + +A+ +LT+L    + ++                              +L +L +++
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 344 LS-NNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           +     +  LP     L  +  +N+  N  +       +
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 153 ETVDLADRQLKLLPE--AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN---- 206
            ++DL   +L  L +      L  LV ++LS N     P        L+   + +     
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 207 ---LLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGY 263
               L+  P+ I L  +L  L +  N +  + E I    ++  LD   N  + +  +   
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVC 608

Query: 264 GLLNLERLSIKLNKLRT 280
             +      +  +K + 
Sbjct: 609 PYIEAGMYMLFYDKTQD 625

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  166 bits (423), Expect = 1e-45
 Identities = 69/245 (28%), Positives = 93/245 (37%), Gaps = 35/245 (14%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI--------------AGLQKLEEL 201
           +++  QL  LP     L  L   +     L A+P  +                   L+EL
Sbjct: 87  EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQEL 146

Query: 202 DVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNI 261
            VS N L SLP        L  L    N+L +LP      S L EL  S N L  LPT  
Sbjct: 147 SVSDNQLASLPALPS---ELCKLWAYNNQLTSLPMLP---SGLQELSVSDNQLASLPTLP 200

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
                 L +L    N+L + P        LK L    N L  LP    +L  L V     
Sbjct: 201 S----ELYKLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSELKELMVSG--- 250

Query: 322 NFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
             N LT LP        L  L +  NQ+  LP++   L + T +NL+ NPL    ++ + 
Sbjct: 251 --NRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 382 KGVEA 386
           +   A
Sbjct: 306 EITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  148 bits (375), Expect = 4e-39
 Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 37/243 (15%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             +++ +  L  LP+       + +L +  N L ++P       +L  L+VS N L SLP
Sbjct: 43  AVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLTSLP 97

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIAR--------------CSSLVELDASFNNLVCLP 258
                LL L + +     L  LP  + +                 L EL  S N L  LP
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP 157

Query: 259 TNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLN 318
                    L +L    N+L + P        L+ L    N+L  LP    +L +L   N
Sbjct: 158 ALPS----ELCKLWAYNNQLTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKLWAYN 210

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378
                N LT LP        L+EL +S N++ +LP        L +L +  N L   PM 
Sbjct: 211 -----NRLTSLPALPS---GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML 259

Query: 379 IVN 381
              
Sbjct: 260 PSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.8 bits (233), Expect = 1e-20
 Identities = 43/227 (18%), Positives = 69/227 (30%), Gaps = 26/227 (11%)

Query: 156 DLADRQLKLLPEAFGRLR-----------------GLVSLNLSRNLLEAMPDSIAGLQKL 198
            ++D QL  LP     L                  GL  L +S N L ++P       +L
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP---SEL 243

Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP 258
           +EL VS N L SLP        L  L+V  N+L  LPES+   SS   ++   N L    
Sbjct: 244 KELMVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300

Query: 259 TNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLN 318
                 + +    S     +  F  +                   +P   G+    +  +
Sbjct: 301 LQALREITSAPGYS---GPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL 365
           +    ++       +  L               +     +L     L
Sbjct: 358 MFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEAL 404

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 9e-17
 Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 12/192 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           + + ++  +L  LP     L+    L +S N L ++P        L  L V  N L  LP
Sbjct: 224 KELIVSGNRLTSLPVLPSELK---ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLP 277

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
           +S+  L +   +N+ GN L+       R   +         ++              R  
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALR--EITSAPGYSGPIIRFDMAGA-SAPRETRAL 334

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELH--GLPRAIGKLTRLEVLNLSSNFND-LTEL 329
                    P    E            E +       + +L+  E     + F   ++  
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSW 394

Query: 330 PETIGDLINLRE 341
              + +   LR 
Sbjct: 395 LAQLAEDEALRA 406

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  157 bits (399), Expect = 1e-44
 Identities = 52/252 (20%), Positives = 89/252 (35%), Gaps = 33/252 (13%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQS 210
           +   + D  LK  L         +  L+LS N L  +    +A   KLE L++SSN+L  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             D +  L  L+ L+++ N +  L        S+  L A+ NN+  +  +        + 
Sbjct: 73  TLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKN 124

Query: 271 LSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPRA--IGKLTRLEVLNLSSN----- 322
           + +  NK+             ++YLD   NE+  +  A        LE LNL  N     
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 323 ---------------FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
                           N L  +         +  + L NN++  +       +NL   +L
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244

Query: 368 DQNPLVIPPMEI 379
             N      +  
Sbjct: 245 RGNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  143 bits (363), Expect = 2e-39
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 12/220 (5%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLP-DSIGLLLNLK 222
           + E            ++ + L+    S+      ++ELD+S N L  +    +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 223 VLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP 282
           +LN+S N L    + +   S+L  LD + N +  L         ++E L    N +    
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115

Query: 283 PSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341
            S    +  K +    N++  L     G  +R++ L+L  N  D     E       L  
Sbjct: 116 CSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           L+L  N I  +         L  L+L  N L     E  +
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQS 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  142 bits (360), Expect = 5e-39
 Identities = 43/241 (17%), Positives = 80/241 (33%), Gaps = 26/241 (10%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPD------------------SIA 193
           + +DL+   L  +          L  LNLS N+L    D                   + 
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL 96

Query: 194 GLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFN 252
               +E L  ++N +  +  S       K + ++ NK+  L +      S +  LD   N
Sbjct: 97  VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 253 NLVCLPTNIGYGLL-NLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
            +  +           LE L+++ N +      +     LK LD   N+L  +       
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
             +  ++L +N   L  + + +    NL   DL  N         F  +N     + +  
Sbjct: 214 AGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 372 L 372
           +
Sbjct: 272 V 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (304), Expect = 4e-31
 Identities = 37/221 (16%), Positives = 82/221 (37%), Gaps = 13/221 (5%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
            T+DL +  ++ L         + +L+ + N +  +  S    Q  + + +++N +  L 
Sbjct: 83  RTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLR 136

Query: 213 D-SIGLLLNLKVLNVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
           D   G    ++ L++  N+++T+   E  A   +L  L+  +N +  +   +      L+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLK 194

Query: 270 RLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL 329
            L +  NKL    P       + ++    N+L  + +A+     LE  +L    N     
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG--NGFHCG 252

Query: 330 PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
                   N R   ++   ++ L         +  L     
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (294), Expect = 1e-29
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 15/198 (7%)

Query: 187 AMPDSIAGLQKLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTLP-ESIARCSSL 244
           A+ +      + +   V+ + L+    S+     N+K L++SGN L+ +    +A  + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 245 VELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304
             L+ S N L     ++   L  L  L +  N ++          S++ L A  N +  +
Sbjct: 61  ELLNLSSNVLYETL-DLE-SLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRV 114

Query: 305 PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALP--DTFFRLEN 361
                +    + + L++  N +T L +   G    ++ LDL  N+I  +   +     + 
Sbjct: 115 S--CSRGQGKKNIYLAN--NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 362 LTKLNLDQNPLVIPPMEI 379
           L  LNL  N +     ++
Sbjct: 171 LEHLNLQYNFIYDVKGQV 188

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.9 bits (221), Expect = 8e-20
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 6/172 (3%)

Query: 153 ETVDLADRQLKLLPEA--FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS 210
           + +DL   ++  +  A        L  LNL  N +  +   +    KL+ LD+SSN L  
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF 205

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
           +         +  +++  NKL  + +++    +L   D   N   C      +      +
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAH-FNELHGLPRAIG-KLTRLEVLNLS 320
            ++    ++       E  ++  L  +       LP     +L  L   +  
Sbjct: 266 -TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (414), Expect = 8e-44
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 26/244 (10%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPD--SIAGLQKLEELDVSSNLLQ 209
             + L   Q++ +P +       +  L  S N L+ +P+  +   +  +  +D S N + 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 210 SLPDSIGL------LLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIG 262
           S   +I         +N   + +S N++   P E  A  S +  +  S N +  +P N  
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 263 -------YGLLNLERLSIKLNKLRTFPPSI--CEMRSLKYLDAHFNELHGLPRAIGKLTR 313
                       L  + ++ NKL +         +  L  +D  +N     P      ++
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 314 LEVLNLSSNF-----NDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLD 368
           L+   +           L + P  I    +L +L + +N IR + +       L  L++ 
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIA 835

Query: 369 QNPL 372
            NP 
Sbjct: 836 DNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (414), Expect = 8e-44
 Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 24/239 (10%)

Query: 153 ETVDLADRQLKLLPE--AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS 210
           +   +    L+  P   +  ++  L  L+   N +  +  +     KL +L +  N ++ 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE 609

Query: 211 LPDSIGLLL-NLKVLNVSGNKLNTLPE--SIARCSSLVELDASFNNLVCLPTNIGYGL-- 265
           +P+        ++ L  S NKL  +P   +      +  +D S+N +     NI   +  
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 266 ---LNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNEL--------HGLPRAIGKLTR 313
              +N   +++  N+++ FP  +      +  +    N +                    
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 314 LEVLNLSSNFNDLTELPETI--GDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
           L  ++L   FN LT L +      L  L  +D+S N   + P        L    +   
Sbjct: 730 LTTIDLR--FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (410), Expect = 3e-43
 Identities = 47/248 (18%), Positives = 89/248 (35%), Gaps = 20/248 (8%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--IAGLQKLEELDVSSNLLQS 210
            +          L +       +    +  N LE  P S  +  + KL  LD   N ++ 
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYG-LLNL 268
           L  + G  + L  L +  N++  +PE   A    +  L  S N L  +P       +  +
Sbjct: 588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 269 ERLSIKLNKLRTFPPSI------CEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSS 321
             +    NK+ +   +I       +  +   +   +NE+   P       + +  + LS+
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 322 NF------NDLTELPETIGDLINLRELDLSNNQIRALPDTFF--RLENLTKLNLDQNPLV 373
           N       N L        +   L  +DL  N++ +L D F    L  L+ +++  N   
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 374 IPPMEIVN 381
             P + +N
Sbjct: 767 SFPTQPLN 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (398), Expect = 1e-41
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 27/236 (11%)

Query: 160 RQLKLLPEAFGRLRGLVSLNLS-RNLLEAMPDSIAGLQKLEELDVSSNLLQS-------- 210
           +Q +    ++  L+ L  + L     +  +PD +  L +L+ L+++ N   S        
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 211 --LPDSIGLLLNLKVLNVSGNKLNTLPES--IARCSSLVELDASFNNLVCLPTNIGYGLL 266
             L D       +++  +  N L   P S  + +   L  LD   N +  L    G   +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FG-TNV 595

Query: 267 NLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRA--IGKLTRLEVLNLSSNF 323
            L  L +  N++   P   C     ++ L    N+L  +P       +  +  ++ S N 
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 324 NDLTELPETIGD------LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
             +      I         IN   + LS N+I+  P   F     ++ + L  N +
Sbjct: 656 --IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (367), Expect = 1e-37
 Identities = 46/249 (18%), Positives = 88/249 (35%), Gaps = 32/249 (12%)

Query: 153 ETVDLADRQLKLLPEAF--GRLRGLVSLNLSRNLLEAMPDSIAG------LQKLEELDVS 204
           E +  +  +LK +P  F    +  + S++ S N + +   +I+             + +S
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 205 SNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLPE--------SIARCSSLVELDASFNNLV 255
            N +Q  P  +      +  + +S N + ++PE        +      L  +D  FN L 
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 256 CLPTNIGYG-LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNE-------LHGLPRA 307
            L  +     L  L  + +  N   +FP        LK               L   P  
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT---FFRLENLTK 364
           I     L  L + SN  D+ ++ E +     L  LD+++N   ++  T    +    +  
Sbjct: 802 ITTCPSLIQLQIGSN--DIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 365 LNLDQNPLV 373
           L  D+   +
Sbjct: 858 LLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  128 bits (324), Expect = 5e-32
 Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 26/246 (10%)

Query: 152 VETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS 210
           V  + LA    K  +P+A G+L  L  L+   +            +   ++         
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 211 L---PDSIGLLLNLKVLNVSGNKLNTLPESIARCS------SLVELDASFNNLVCLPTNI 261
           +      +     L + ++  + +N  PE               ++    N +  +   I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
              L  L+ +    +       ++           +  +      +   L  L  + L +
Sbjct: 445 Q-RLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 322 NFNDLTELPETIGDLINLRELDLSNNQIR----------ALPDTFFRLENLTKLNLDQNP 371
              ++T+LP+ + DL  L+ L+++ N+             L D       +    +  N 
Sbjct: 501 C-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 372 LV-IPP 376
           L   P 
Sbjct: 560 LEEFPA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (307), Expect = 7e-30
 Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 15/217 (6%)

Query: 175 LVSLNLSRN-LLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIG---LLLNLKVLNVSGNK 230
           +  L+L+       +PD+I  L +L+ L   ++         G   L  ++        +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYG---LLNLERLSIKL--NKLRTFPPSI 285
           ++     +     L   D   + +   P          ++L+   I    N++     +I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 286 CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS 345
             +  L+ +    +       A+           S           +  +L +L +++L 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWE-----DANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 346 -NNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
               +  LPD  + L  L  LN+  N  +       +
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 5e-15
 Identities = 19/171 (11%), Positives = 54/171 (31%), Gaps = 26/171 (15%)

Query: 214 SIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
            +     +  L+++G      +P++I + + L  L    ++        G   L  +   
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN----FNDLTE 328
            + +++R                     +H     +    RL + +L  +      ++  
Sbjct: 378 ERKHRIR---------------------MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 329 LPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379
           + +     +   ++    N+I  +     RL  L  +    +P     + +
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  152 bits (385), Expect = 6e-42
 Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
             + L    L  LP   F     L +L++S N LE + D        L+ L +SSN L  
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
           +     L+ +L   NVS N L+TL   I    ++ ELDAS N++  +   +    + L  
Sbjct: 180 VDL--SLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV---NVELTI 230

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL 329
           L ++ N L      +     L  +D  +NEL  +      K+ RLE L +S+  N L  L
Sbjct: 231 LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN--NRLVAL 287

Query: 330 PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
                 +  L+ LDLS+N +  +     + + L  L LD N +
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  139 bits (351), Expect = 4e-37
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 17/225 (7%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           E ++L D Q++ +   AF     +  L +  N +  +P  +   +  L  L +  N L S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 211 LPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
           LP  I      L  L++S N L  + +      +SL  L  S N L  +  +    + +L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSL 188

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328
              ++  N L T    I    +++ LDA  N ++ +   +     L +L L    N+LT+
Sbjct: 189 FHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV--NVELTILKLQH--NNLTD 240

Query: 329 LPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL 372
               + +   L E+DLS N++  +    F +++ L +L +  N L
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (350), Expect = 6e-37
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 15/224 (6%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           + V   +  ++ LP       R +  LNL+   +E +     A    +++L +  N ++ 
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 211 LPDSIGLLL-NLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
           LP  +   +  L VL +  N L++LP  I      L  L  S NNL  +  +      +L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328
           + L +  N+L     S+  + SL + +  +N L  L         +E L+ S   N +  
Sbjct: 168 QNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLA----IPIAVEELDASH--NSINV 219

Query: 329 LPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +       + L  L L +N +            L +++L  N L
Sbjct: 220 VRG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNEL 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 1e-35
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 14/220 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           + + L+  +L  +      +  L   N+S NLL     ++A    +EELD S N +  + 
Sbjct: 168 QNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS----TLAIPIAVEELDASHNSINVVR 221

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
               + + L +L +  N L      +     LVE+D S+N L  +  +    +  LERL 
Sbjct: 222 G--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
           I  N+L         + +LK LD   N L  + R   +  RLE L L    N +  L   
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH--NSIVTLK-- 334

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +     L+ L LS+N             N+ +  +D    
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  130 bits (329), Expect = 6e-34
 Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 14/210 (6%)

Query: 171 RLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSG 228
            L     +    + +  +P ++    +++E L+++   ++ +          ++ L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 229 NKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI-C 286
           N +  LP  +      L  L    N+L  LP  I +    L  LS+  N L         
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 287 EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN 346
              SL+ L    N L  +   +  +  L   N+S N   L+ L       I + ELD S+
Sbjct: 163 ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL--LSTLA----IPIAVEELDASH 214

Query: 347 NQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
           N I  +         LT L L  N L    
Sbjct: 215 NSINVVRGPVNV--ELTILKLQHNNLTDTA 242

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 29/146 (19%)

Query: 254 LVCLPTNIGY-----------------------GLLNLERLSIKLNKLRTFPPSI-CEMR 289
             C+ +N+ Y                        L N + ++ K + +R  P ++    R
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 290 SLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELDLSNN 347
            ++ L+ +  ++  +   A      ++ L +   FN +  LP  +  ++  L  L L  N
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG--FNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 348 QIRALP-DTFFRLENLTKLNLDQNPL 372
            + +LP   F     LT L++  N L
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  152 bits (385), Expect = 4e-41
 Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           + +DL+   L  +          L  LNLS N+L    D +  L  L  LD+++N +Q L
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
                   +++ L+ + N ++ +  S         +  + N +  L          ++ L
Sbjct: 96  LV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 272 SIKLNKLRTFPPS--ICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL 329
            +KLN++ T   +       +L++L+  +N ++ +   +    +L+ L+LSSN   L  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN--KLAFM 206

Query: 330 PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379
                    +  + L NN++  +       +NL   +L  N      +  
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  146 bits (371), Expect = 3e-39
 Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 16/234 (6%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQS 210
           +   + D  LK  L         +  L+LS N L  +    +A   KLE L++SSN+L  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             D +  L  L+ L+++ N +  L        S+  L A+ NN+  +  +        + 
Sbjct: 73  TLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSR---GQGKKN 124

Query: 271 LSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPRA--IGKLTRLEVLNLSSNFNDLT 327
           + +  NK+             ++YLD   NE+  +  A        LE LNL  NF  + 
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--IY 182

Query: 328 ELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           ++   +     L+ LDLS+N++  +   F     +T ++L  N LV+    +  
Sbjct: 183 DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (334), Expect = 4e-34
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 12/220 (5%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL-PDSIGLLLNLK 222
           + E            ++ + L+    S+      ++ELD+S N L  +    +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 223 VLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP 282
           +LN+S N L    + +   S+L  LD + N +  L         ++E L    N +    
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115

Query: 283 PSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE 341
            S    +  K +    N++  L     G  +R++ L+L  N  D     E       L  
Sbjct: 116 CSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           L+L  N I  +         L  L+L  N L     E  +
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQS 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 4e-26
 Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 15/198 (7%)

Query: 187 AMPDSIAGLQKLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLNTL-PESIARCSSL 244
           A+ +      + +   V+ + L+    S+     N+K L++SGN L+ +    +A  + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 245 VELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL 304
             L+ S N L          L  L  L +  N ++          S++ L A  N +  +
Sbjct: 61  ELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRV 114

Query: 305 PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALP--DTFFRLEN 361
                +    + + L++  N +T L +   G    ++ LDL  N+I  +   +     + 
Sbjct: 115 S--CSRGQGKKNIYLAN--NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 362 LTKLNLDQNPLVIPPMEI 379
           L  LNL  N +     ++
Sbjct: 171 LEHLNLQYNFIYDVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 3e-23
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 21/221 (9%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           E ++L    +  +         L +L+LS N L  M         +  + + +N L  + 
Sbjct: 172 EHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
            ++    NL+  ++ GN  +          +      +   +  L               
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
                    P    +   L  L    + L                      ++   L   
Sbjct: 291 YGAYCCEDLPAPFAD--RLIALKRKEHALLSGQ-----------------GSETERLECE 331

Query: 333 IGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL 372
             +    RE+D    Q R +      R +    L   +  L
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 29/242 (11%), Positives = 61/242 (25%), Gaps = 31/242 (12%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP----------------------- 189
             + L + +L L+ +A    + L   +L  N                             
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 190 -DSIAGLQKLEELDVSSNLLQSLPDSIG------LLLNLKVLNVSGNKLNTLPESIARCS 242
             +             +   + LP                +L+  G++   L       +
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNEL 301
              E+DA       +   +         L  K   L             L          
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 302 HGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLEN 361
             L  A  + + L++L       +   + +       +R+ D+  ++   L +   RL+ 
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456

Query: 362 LT 363
           L 
Sbjct: 457 LN 458

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (390), Expect = 1e-40
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 17/239 (7%)

Query: 153 ETVDLADRQL--KLLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ 209
           + + LA+ +   ++     G    L  L+LS N    A+P        LE L +SSN   
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 210 -SLP-DSIGLLLNLKVLNVSGNKLN-TLPESIARCS-SLVELDASFNNLV-CLPTNIGYG 264
             LP D++  +  LKVL++S N+ +  LPES+   S SL+ LD S NN    +  N+   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 265 LL-NLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSS 321
               L+ L ++ N      PP++     L  L   FN L G +P ++G L++L  L L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 322 NFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPL--VIPP 376
           N   L  E+P+ +  +  L  L L  N +   +P       NL  ++L  N L   IP 
Sbjct: 452 N--MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (346), Expect = 7e-35
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 33/243 (13%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLK 222
           +P+    ++ L +L L  N L   +P  ++    L  + +S+N L   +P  IG L NL 
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 223 VLNVSGNKLN-TLPESIARCSSLVELDASFNNLV-CLPTNIG------------------ 262
           +L +S N  +  +P  +  C SL+ LD + N     +P  +                   
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577

Query: 263 -YGLLNLERLSIKLNKLR---TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVL 317
                  +      N L         +  + +    +       G           +  L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 318 NLSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPL--V 373
           ++S N   L+  +P+ IG +  L  L+L +N I  ++PD    L  L  L+L  N L   
Sbjct: 638 DMSYNM--LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 374 IPP 376
           IP 
Sbjct: 696 IPQ 698

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (338), Expect = 8e-34
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 23/242 (9%)

Query: 152 VETVDLADRQLKL----LPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNL 207
           V ++DL+ + L +    +  +   L GL SL LS + +            L  LD+S N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 208 LQ-SLPD--SIGLLLNLKVLNVSGNKLN-TLP-ESIARCSSLVELDASFNNLV-CLPTNI 261
           L   +    S+G    LK LNVS N L+         + +SL  LD S N++        
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 262 GY--GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLN 318
               G   L+ L+I  NK+ +    +    +L++LD   N     +P  +G  + L+ L+
Sbjct: 172 VLSDGCGELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLD 229

Query: 319 LSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLV--I 374
           +S   N L+ +    I     L+ L++S+NQ    +P     L++L  L+L +N     I
Sbjct: 230 ISG--NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI 285

Query: 375 PP 376
           P 
Sbjct: 286 PD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (256), Expect = 2e-23
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 196 QKLEELDVSSNLLQ----SLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
            K+  +D+SS  L     ++  S+  L  L+ L +S + +N         +SL  LD S 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 252 NNLV-CLPTNIGYG-LLNLERLSIKLNKLRTFP---PSICEMRSLKYLDAHFNELHG-LP 305
           N+L   + T    G    L+ L++  N L  FP       ++ SL+ LD   N + G   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 306 RAI---GKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLE 360
                      L+ L +S   N ++ ++   +   +NL  LD+S+N     +P       
Sbjct: 169 VGWVLSDGCGELKHLAISG--NKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223

Query: 361 NLTKLNLDQNPLV--IPP 376
            L  L++  N L      
Sbjct: 224 ALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 2e-21
 Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 34/190 (17%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQ---SLPDSIGLLLNL 221
           +P A  +  G ++ N            I      +E   + NLL+      + +  L   
Sbjct: 554 IPAAMFKQSGKIAANFIAGKR---YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 222 KVLNVSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280
              N++          +     S++ LD S+N L       G          I       
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS------G---------YI------- 648

Query: 281 FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLIN 338
            P  I  M  L  L+   N++ G +P  +G L  L +L+LSS  N L   +P+ +  L  
Sbjct: 649 -PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS--NKLDGRIPQAMSALTM 705

Query: 339 LRELDLSNNQ 348
           L E+DLSNN 
Sbjct: 706 LTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 5e-18
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 152 VETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ 209
               ++  R         F     ++ L++S N+L   +P  I  +  L  L++  N + 
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 210 -SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASFNNL 254
            S+PD +G L  L +L++S NKL+  +P++++  + L E+D S NNL
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 5e-17
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 29/178 (16%)

Query: 132 LVDVNEDVVKILQEAESGVVVETVDLADRQLKL---LPEAFGRLRGLVSLNLSRNLLE-A 187
            +  N    K     ++  + +    A   L+      E   RL      N++  +    
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 188 MPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLV 245
              +      +  LD+S N+L   +P  IG +  L +LN+  N ++ ++P+ +     L 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG 303
            LD S N L                           P ++  +  L  +D   N L G
Sbjct: 684 ILDLSSNKLDG-----------------------RIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 6e-16
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 12/145 (8%)

Query: 240 RCSS--LVELDASFNNLVCLPTNIGYGLLN---LERLSIKLNKLRTFPPSICEMRSLKYL 294
            C    +  +D S   L    + +   LL+   LE L +  + +           SL  L
Sbjct: 46  TCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105

Query: 295 DAHFNELHGL---PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR- 350
           D   N L G      ++G  + L+ LN+SSN  D          L +L  LDLS N I  
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 351 ALPDTFFRLENLTKL---NLDQNPL 372
           A    +   +   +L    +  N +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKI 190

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  148 bits (375), Expect = 7e-40
 Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 9/233 (3%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
              +DL   ++K L +  F     L  L L+ N++ A+       L  L  L + SN L+
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 210 SLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLN 267
            +P  +   L NL  L++S NK+  L + +     +L  L+   N+LV +      GL +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 268 LERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFND 325
           LE+L+++   L + P  ++  +  L  L      ++ +   +  +L RL+VL +S     
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-PY 212

Query: 326 LTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV-IPP 376
           L  +       +NL  L +++  + A+P      L  L  LNL  NP+  I  
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 2e-29
 Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 30/227 (13%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQS 210
           +++++ D  L  +   AF  L  L  L L +  L ++P  +++ L  L  L +    + +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 211 LPDSI-GLLLNLKVLNVSGNK-LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
           + D     L  LKVL +S    L+T+  +     +L  L  +  NL  +P      L+ L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328
             L++  N + T   S                       + +L RL+ + L      L  
Sbjct: 251 RFLNLSYNPISTIEGS----------------------MLHELLRLQEIQLVG--GQLAV 286

Query: 329 LPE-TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV 373
           +       L  LR L++S NQ+  L    F  + NL  L LD NPL 
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC 286
              +   +PE I   +    LD   N +  L  +      +LE L +  N +    P   
Sbjct: 19  HRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 287 E-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELD 343
             + +L+ L    N L  +P  +   L+ L  L++S   N +  L + +  DL NL+ L+
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE--NKIVILLDYMFQDLYNLKSLE 134

Query: 344 LSNNQIRALPD-TFFRLENLTKLNLDQNPL-VIPP 376
           + +N +  +    F  L +L +L L++  L  IP 
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (358), Expect = 9e-39
 Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 26/243 (10%)

Query: 152 VETVDLADRQL---KLLPEAFGRLRGLVSLNLS-RNLLE-AMPDSIAGLQKLEELDVSSN 206
           V  +DL+   L     +P +   L  L  L +   N L   +P +IA L +L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 207 LLQ-SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASFNNLV-CLPTNIGY 263
            +  ++PD +  +  L  L+ S N L+ TLP SI+   +LV +    N +   +P + G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG- 170

Query: 264 GLLNLERLSIKL----NKLR-TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVL 317
              +  +L   +    N+L    PP+   + +L ++D   N L G      G     + +
Sbjct: 171 ---SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 318 NLSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPL--V 373
           +L+ N   L  +L + +G   NL  LDL NN+I   LP    +L+ L  LN+  N L   
Sbjct: 227 HLAKNS--LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 374 IPP 376
           IP 
Sbjct: 284 IPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 1e-37
 Identities = 54/216 (25%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLK 222
           +P A  +L  L  L ++   +  A+PD ++ ++ L  LD S N L  +LP SI  L NL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 223 VLNVSGNKLN-TLPESIARCSSLVE-LDASFNNLV-CLPTNIGYGLLNLERLSIKLNKLR 279
            +   GN+++  +P+S    S L   +  S N L   +P       LNL  + +  N L 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLE 210

Query: 280 -TFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDL 336
                     ++ + +    N L   L + +G    L  L+L +  N +   LP+ +  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN--NRIYGTLPQGLTQL 267

Query: 337 INLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNP 371
             L  L++S N +   +P     L+         N 
Sbjct: 268 KFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (335), Expect = 2e-35
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 19/226 (8%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLE---AMPDSIAGLQKLEELDVSS-NLLQ-SLPDSIGLLL 219
           L +   +   + +L+LS   L     +P S+A L  L  L +   N L   +P +I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 220 NLKVLNVSGNKLN-TLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLSIKLNK 277
            L  L ++   ++  +P+ +++  +LV LD S+N L   LP +I   L NL  ++   N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNR 160

Query: 278 LR-TFPPSICEMRSL-KYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETI 333
           +    P S      L   +    N L G +P     L  L  ++LS N   L  +     
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM--LEGDASVLF 217

Query: 334 GDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPL--VIPP 376
           G   N +++ L+ N +   L       +NL  L+L  N +   +P 
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  144 bits (364), Expect = 2e-38
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 156 DLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPD 213
           +L + Q++++   +F  LR L  L LSRN +  +      GL  L  L++  N L ++P+
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129

Query: 214 SI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELD-ASFNNLVCLPTNIGYGLLNLER 270
                L  LK L +  N + ++P     R  SL  LD      L  +      GL NL  
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL 329
           L++ +  LR  P ++  +  L  LD   N L  +   +   L  L+ L +  +   +  +
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS--QIQVI 246

Query: 330 PE-TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV 373
                 +L +L E++L++N +  LP D F  L +L +++L  NP  
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  119 bits (301), Expect = 7e-30
 Identities = 57/207 (27%), Positives = 94/207 (45%), Gaps = 12/207 (5%)

Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP 235
            +   R  L  +PD I        L++  N +Q +  +S   L +L++L +S N + T+ 
Sbjct: 47  KVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 236 ESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKY 293
                  ++L  L+   N L  +P      L  L+ L ++ N + + P      + SL+ 
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 294 LD-AHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
           LD      L  +   A   L+ L  LNL+    +L E+P  +  LI L ELDLS N + A
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAM--CNLREIP-NLTPLIKLDELDLSGNHLSA 221

Query: 352 LP-DTFFRLENLTKLNLDQNPL-VIPP 376
           +   +F  L +L KL + Q+ + VI  
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 2e-19
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
               +      L  +P+ I+  ++   L+   N +  +  N    L +LE L +  N +R
Sbjct: 44  QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 280 TFPPSI-CEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPE-TIGDL 336
           T        + +L  L+   N L  +P  A   L++L+ L L +N   +  +P      +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN--PIESIPSYAFNRI 159

Query: 337 INLRELDLS-NNQIRALP-DTFFRLENLTKLNLDQNPLVIPP 376
            +LR LDL    ++  +    F  L NL  LNL    L   P
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  144 bits (364), Expect = 2e-38
 Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 11/229 (4%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLEELDVSSNLLQS 210
             ++L +  ++++    F  L  L  L L RN +      +  GL  L  L++  N L  
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137

Query: 211 LP-DSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELD-ASFNNLVCLPTNIGYGLLN 267
           +P  +   L  L+ L +  N + ++P     R  SL+ LD      L  +      GL N
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197

Query: 268 LERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDL 326
           L+ L++ +  ++  P ++  +  L+ L+   N    +   +   L+ L+ L + ++   +
Sbjct: 198 LKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS--QV 254

Query: 327 TELPE-TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV 373
           + +       L +L EL+L++N + +LP D F  L  L +L+L  NP  
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (276), Expect = 2e-26
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 9/185 (4%)

Query: 197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLV 255
           +  ++  +   L  +P   G+  N + LN+  N +  +          L  L    N++ 
Sbjct: 55  QFSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLP-RAIGKLTR 313
            +      GL +L  L +  N L   P      +  L+ L    N +  +P  A  ++  
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 314 LEVLNLSSNFNDLTELPETI-GDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           L  L+L      L  + E     L NL+ L+L    I+ +P     L  L +L +  N  
Sbjct: 173 LMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230

Query: 373 -VIPP 376
             I P
Sbjct: 231 PEIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 240 RCSS-LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAH 297
            CS+   ++  +   L  +P  I     N   L++  N ++         +  L+ L   
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 298 FNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-D 354
            N +  +   A   L  L  L L  N   LT +P      L  LREL L NN I ++P  
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDN--WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165

Query: 355 TFFRLENLTKLNLDQN 370
            F R+ +L +L+L + 
Sbjct: 166 AFNRVPSLMRLDLGEL 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  145 bits (368), Expect = 3e-38
 Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
             + L    L  LP   F     L +L++S N LE + D        L+ L +SSN L  
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
           +     L+ +L   NVS N L+TL   I    ++ ELDAS N++  +   +    + L  
Sbjct: 186 VDL--SLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV---NVELTI 236

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL 329
           L ++ N L      +     L  +D  +NEL  +      K+ RLE L +S+  N L  L
Sbjct: 237 LKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN--NRLVAL 293

Query: 330 PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
                 +  L+ LDLS+N +  +     + + L  L LD N +
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  136 bits (344), Expect = 4e-35
 Identities = 53/251 (21%), Positives = 102/251 (40%), Gaps = 27/251 (10%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           + V   +  ++ LP       R +  LNL+   +E +     A    +++L +  N ++ 
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 211 LPDSIGL-LLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
           LP  +   +  L VL +  N L++LP  I      L  L  S NNL  +  +      +L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 269 ERLSIKLNKLRTFPP-----------------SICEMRSLKYLDAHFNELHGLPRAIGKL 311
           + L +  N+L                      ++    +++ LDA  N ++ +   +   
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--N 231

Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQN 370
             L +L L  N  +LT+    + +   L E+DLS N++  +    F +++ L +L +  N
Sbjct: 232 VELTILKLQHN--NLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 371 PLVIPPMEIVN 381
            LV   +    
Sbjct: 289 RLVALNLYGQP 299

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (337), Expect = 4e-34
 Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 16/224 (7%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           + + +    ++ LP   F  +  L  L L RN L ++P  I     KL  L +S+N L+ 
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 211 LPDSI-GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
           + D       +L+ L +S N+L  +  S+    SL   + S+N L  L        + +E
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLA-----IPIAVE 214

Query: 270 RLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL 329
            L    N +      +     L  L    N L      +     L  ++LS   N+L ++
Sbjct: 215 ELDASHNSINVVRGPVN--VELTILKLQHNNLTDTA-WLLNYPGLVEVDLSY--NELEKI 269

Query: 330 PETI-GDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
                  +  L  L +SNN++ AL      +  L  L+L  N L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (322), Expect = 5e-32
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 14/220 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           + + L+  +L  +      +  L   N+S NLL     ++A    +EELD S N +  + 
Sbjct: 174 QNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS----TLAIPIAVEELDASHNSINVVR 227

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
               + + L +L +  N L      +     LVE+D S+N L  +  +    +  LERL 
Sbjct: 228 G--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
           I  N+L         + +LK LD   N L  + R   +  RLE L L  N   +  L   
Sbjct: 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS--IVTLK-- 340

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +     L+ L LS+N             N+ +  +D    
Sbjct: 341 LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQ 379

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (314), Expect = 4e-31
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 14/212 (6%)

Query: 169 FGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNV 226
              L     +    + +  +P ++    +++E L+++   ++ +          ++ L +
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 227 SGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI 285
             N +  LP  +      L  L    N+L  LP  I +    L  LS+  N L       
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 286 -CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDL 344
                SL+ L    N L  +   +  +  L   N+S N   L+ L       I + ELD 
Sbjct: 167 FQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL--LSTLA----IPIAVEELDA 218

Query: 345 SNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
           S+N I  +         LT L L  N L    
Sbjct: 219 SHNSINVVRGPVNV--ELTILKLQHNNLTDTA 248

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 25/237 (10%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
             VDL+  +L+ +    F +++ L  L +S N L A+      +  L+ LD+S N L  +
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             +      L+ L +  N + TL  S     +L  L  S N+  C   ++     N+ R 
Sbjct: 317 ERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDC--NSLRALFRNVARP 372

Query: 272 SIKLNKL--------------RTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVL 317
           ++                   +       + R L+Y+    + +  + RA G+ +  + +
Sbjct: 373 AVDDADQHCKIDYQLEHGLCCKESDKPYLD-RLLQYIALT-SVVEKVQRAQGRCSATDTI 430

Query: 318 NLSSN----FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
           N   +          +P    + +     +L     +   +   + + L  L+ + +
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 29/146 (19%)

Query: 254 LVCLPTNIGYGLL-----------------------NLERLSIKLNKLRTFPPSI-CEMR 289
             C+ +N+ Y  +                       N + ++ K + +R  P ++    R
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 290 SLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELDLSNN 347
            ++ L+ +  ++  +   A      ++ L +   FN +  LP  +  ++  L  L L  N
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG--FNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 348 QIRALP-DTFFRLENLTKLNLDQNPL 372
            + +LP   F     LT L++  N L
Sbjct: 134 DLSSLPRGIFHNTPKLTTLSMSNNNL 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (369), Expect = 3e-38
 Identities = 55/233 (23%), Positives = 89/233 (38%), Gaps = 12/233 (5%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSN--LL 208
           ++ +DL    L  LP     L  L  L LS N  E +   S +    L  L +  N   L
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 209 QSLPDSIGLLLNLKVLNVSGNKLNTLP---ESIARCSSLVELDASFNNLVCLPTNIGYGL 265
           +     +  L NL+ L++S + + T       +   S L  L+ S+N  + L T      
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 266 LNLERLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSN 322
             LE L +   +L+          +  LK L+   + L     +    L  L+ LNL  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 323 -FNDLTEL-PETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
            F         ++  L  L  L LS   + ++    F  L+ +  ++L  N L
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (351), Expect = 8e-36
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 16/241 (6%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRN--LLEAMPDSIAGLQKLEELDVSSNLLQ 209
           + + L+  + + L + +      L  L++  N   LE     +  L+ L ELD+S + ++
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 210 SLPDSIGL---LLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNL-VCLPTNIGYG 264
           +          L +L+ LN+S N+  +L  E+   C  L  LD +F  L V    +    
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 265 LLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGL----PRAIGKLTRLEVLNL 319
           L  L+ L++  + L      + + + +L++L+   N           ++  L RLE+L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 320 SSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378
           S    DL+ +       L  +  +DLS+N++ +             LNL  N + I    
Sbjct: 484 SFC--DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541

Query: 379 I 379
           +
Sbjct: 542 L 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (338), Expect = 4e-34
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 13/233 (5%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGL--VSLNLSRNLLEAMPDSIAGLQKLEELDVSSN--L 207
           + +D  +  +  L  E    L+    +SLNL+ N +  +          + L+      L
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 208 LQSLPDSIGL-LLNLKVLNVSGNKLNTLPESI---ARCSSLVELDASFNNLVCLPTNIGY 263
           L          + +L +          +  ++       S+  ++   +    + +N  +
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSN 322
               L+ L +    L   P  +  + +LK L    N+   L   +      L  L++  N
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 323 FNDLTELPETIGDLINLRELDLSNNQIRALP---DTFFRLENLTKLNLDQNPL 372
              L      + +L NLRELDLS++ I            L +L  LNL  N  
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (336), Expect = 6e-34
 Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 11/231 (4%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRG--LVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLL 208
                 D   + + P  F  L    + S+NL ++    +  ++      L+ELD+++  L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 209 QSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVC-LPTNIGYGLL 266
             LP  +  L  LK L +S NK   L + S +   SL  L    N     L T     L 
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 267 NLERLSIKLNKLRTFPPSICE---MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSN 322
           NL  L +  + + T      +   +  L+ L+  +NE   L   A  +  +LE+L+L+  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 323 FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
              + +      +L  L+ L+LS++ +    +  F  L  L  LNL  N  
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (336), Expect = 7e-34
 Identities = 33/220 (15%), Positives = 78/220 (35%), Gaps = 10/220 (4%)

Query: 163 KLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLN 220
            +    F RL  L  L+L+R  +  +  D+     +L+ L +++N L  + ++       
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 221 LKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           LK L      ++++    +    +L  L    N++  +    G+    L+ L  + N + 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 280 TFPP-SICEMRSLK--YLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIG-D 335
                 +  ++      L+ + N++ G+          + LN     N L          
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 336 LINLRELDLSNNQIRALPDTFF---RLENLTKLNLDQNPL 372
           + +L      +     +    F      ++  +NL ++  
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  131 bits (332), Expect = 2e-33
 Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 10/228 (4%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL 211
           +T +  +  L  +P           L  S N+L  +   + + L  L  LD++   +  +
Sbjct: 15  KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 212 -PDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
             D+      L  L ++ N L  +   +++   +L  L      +  +     +    LE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 270 RLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLT 327
            L +  N + +   P       LK LD   N +H L +  +  L +   L+L+ N ND+ 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 328 ELPETIGDLINLRELDLSNNQIRALPD---TFFRLENLTKLNLDQNPL 372
            +     D    + L+    Q   +         +++L     +    
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 3e-30
 Identities = 36/209 (17%), Positives = 78/209 (37%), Gaps = 11/209 (5%)

Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTL- 234
           + N     L  +P ++      E L+ S N+L ++   +   L+NL  L+++  ++  + 
Sbjct: 16  TYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKY 293
            ++      L  L  + N L+ +      G   L+ L      + +     +   ++L+ 
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 294 LDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLR--ELDLSNNQI 349
           L    N +  +         +L+VL+  +N   +  L  E +  L       L+L+ N I
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNA--IHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 350 RALPDTFFRLENLTKLNLDQNPLVIPPME 378
             +    F       LN      ++   +
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (289), Expect = 1e-27
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCL 257
           +  +  +  L  +P    L  + + L  S N L T+   + +R  +L  LD +   +  +
Sbjct: 15  KTYNCENLGLNEIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGL-PRAIGKLTRLE 315
             +       L+ L +  N L     +     ++LK+L      +  +    +     LE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 316 VLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRAL-PDTFFRLENLT--KLNLDQNP 371
            L L SN   ++ +          L+ LD  NN I  L  +    L+  T   LNL+ N 
Sbjct: 133 SLYLGSNH--ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 372 L-VIPP 376
           +  I P
Sbjct: 191 IAGIEP 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 9e-24
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
           K  N     LN +P ++   +S   L+ SFN L  +       L+NL  L +   ++   
Sbjct: 15  KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 282 PP-SICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLIN 338
              +      L  L    N L  +   A+     L+ L        ++ +    + +   
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG--ISSIDFIPLHNQKT 130

Query: 339 LRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPL-VIPPMEIVN 381
           L  L L +N I ++     F  E L  L+   N +  +   ++ +
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (254), Expect = 3e-23
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMPD--SIAGLQKLEELDVSSNLLQSLPDSI-GLLLN 220
           L  EAF     L  L+L+   L+          L  L+ L++S +LL    + +   L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 221 LKVLNVSGNKLNTL----PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276
           L+ LN+ GN           S+     L  L  SF +L  +  +    L  +  + +  N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 277 KLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSN 322
           +L +            YL+   N +  + P  +  L++   +NL  N
Sbjct: 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (368), Expect = 4e-38
 Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 13/230 (5%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD---SIAGLQKLEELDVSSNLLQ 209
           +++ L   +  +       L  L  L+LSRN L        S  G   L  LD+S N   
Sbjct: 331 KSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESIA--RCSSLVELDASFNNLVCLPTNIGYGLLN 267
            +  +   L  L+ L+   + L  + E  A      L+ LD S+ N       I  GL +
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 268 LERLSIKLNKLRTFPPS--ICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFN 324
           L  L +  N  +    S       +L +LD    +L  +       L RL++LN+S N  
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN- 508

Query: 325 DLTELP-ETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
            L  L       L +L  LD S N+I           ++L   NL  N +
Sbjct: 509 -LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (359), Expect = 5e-37
 Identities = 52/233 (22%), Positives = 83/233 (35%), Gaps = 14/233 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           +++ +   QLK  P     L  L SL L+ N    +      L  L  LD+S N L    
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 213 D---SIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIG-YGLLNL 268
               S     +L+ L++S N    +  +      L  LD   + L  +        L  L
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 269 ERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFND 325
             L I     +     I   + SL  L    N      L       T L  L+LS     
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC--Q 484

Query: 326 LTELPE-TIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPLVIPP 376
           L ++       L  L+ L++S+N +  L  + +  L +L+ L+   N +    
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  133 bits (337), Expect = 6e-34
 Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             + LA   +K L +   +     SL++ R  L+  P     L  L+ L ++ N      
Sbjct: 288 SAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKGSISF 344

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPE---SIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
             + L  +L  L++S N L+       S    +SL  LD SFN  + +  N   GL  L+
Sbjct: 345 KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQ 402

Query: 270 RLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDL 326
            L  + + L+      +   +  L YLD  +             LT L  L ++ N    
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 327 TELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL-VIPP 376
             L     +  NL  LDLS  Q+  +    F  L  L  LN+  N L  +  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (335), Expect = 1e-33
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 16/231 (6%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLEELDVSSNLLQSL- 211
           T    D++L  +P+         +++LS N L+     S +   +L+ LD+S   ++++ 
Sbjct: 15  TYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 212 PDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             +   L +L  L ++GN + +  P S +  +SL  L A    L  L +     L+ L++
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 271 LSIKLNKLRTF--PPSICEMRSLKYLDAHFNELHGLPRAI-----GKLTRLEVLNLSSNF 323
           L++  N + +   P     + +L ++D  +N +  +                 L++S N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 324 NDLTELPETIGDLINLRELDLSNNQI--RALPDTFFRLENLTKLNLDQNPL 372
             +  + +     I L EL L  N      +      L  L    L     
Sbjct: 193 --IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 3e-31
 Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 18/229 (7%)

Query: 166 PEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKV 223
            +A+  L  L +L L+ N +++  P S +GL  LE L      L SL    IG L+ LK 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 224 LNVSGNKLNT--LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL----NK 277
           LNV+ N +++  LP   +  ++LV +D S+N +  +  N    L    ++++ L    N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 278 LRTFPPSICEMRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSN----FNDLTELPE 331
           +        +   L  L    N      +   +  L  L V  L         +L     
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 332 -TIGDLINLR--ELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPP 376
             +  L ++   E  L+     +     F  L N++ ++L    +    
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 4e-31
 Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 14/207 (6%)

Query: 176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTL 234
           ++       L  +PD I      + +D+S N L+ L   S      L+ L++S  ++ T+
Sbjct: 14  ITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 235 -PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLK 292
             ++      L  L  + N +         GL +LE L     KL +     I ++ +LK
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 293 YLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLR----ELDLS 345
            L+   N +H   LP     LT L  ++LS N+  +  +    +  L         LD+S
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY--IQTITVNDLQFLRENPQVNLSLDMS 189

Query: 346 NNQIRALPDTFFRLENLTKLNLDQNPL 372
            N I  + D  F+   L +L L  N  
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (306), Expect = 6e-30
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 20/227 (8%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQS--LPDSIGLLLN 220
             P +F  L  L +L      L ++    I  L  L++L+V+ N + S  LP     L N
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 221 LKVLNVSGNKLNTLPESI-----ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL 275
           L  +++S N + T+  +            + LD S N +  +        + L  L+++ 
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRG 213

Query: 276 NKLRTFPPSIC--EMRSLKYLDAHFNELHGL-------PRAIGKLTRLEVLNLSSNFNDL 326
           N   +     C   +  L        E           P  +  L  + +      + + 
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 327 TEL-PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
                     L N+  + L+   I+ L D          L++ +  L
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (303), Expect = 1e-29
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 12/212 (5%)

Query: 153 ETVDLADRQLKLLPE---AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQ 209
             +DL+   L        +      L  L+LS N    M  +  GL++L+ LD   + L+
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412

Query: 210 SLPDSIGL--LLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLV-CLPTNIGYGL 265
            + +      L  L  L++S               +SL  L  + N+      +N+    
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 266 LNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNF 323
            NL  L +   +L      + + +  L+ L+   N L  L      +L  L  L+ S  F
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS--F 530

Query: 324 NDLTELPETIGDLI-NLRELDLSNNQIRALPD 354
           N +      +     +L   +L+NN +  + +
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVACICE 562

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (302), Expect = 2e-29
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 22/231 (9%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAM-------PDSIAGLQKL--EELDVSSNLLQSL-PD 213
           ++      L GL    L     +         P  + GL  +  +E  ++     S    
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 214 SIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI 273
               L N+  ++++G  +  L   + +      L      L   PT     L  L+ L++
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTL 335

Query: 274 KLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR---AIGKLTRLEVLNLSSNFNDLTELP 330
            +NK  +       + SL YLD   N L        +      L  L+LS  FN    + 
Sbjct: 336 TMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS--FNGAIIMS 392

Query: 331 ETIGDLINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPLVIPPMEI 379
                L  L+ LD  ++ ++ + +   F  LE L  L++      I    I
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (282), Expect = 9e-27
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 201 LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPT 259
                  L  +PD   +  + K +++S N L  L   S +  S L  LD S   +  +  
Sbjct: 16  YQCMDQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 260 NIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVL 317
              +GL +L  L +  N +++F P S   + SL+ L A   +L  L    IG+L  L+ L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 318 NLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRL-----ENLTKLNLDQNPL 372
           N++ NF    +LP    +L NL  +DLS N I+ +     +      +    L++  NP+
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 373 -VIPP 376
             I  
Sbjct: 194 DFIQD 198

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 3e-26
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 38/254 (14%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKL----EELDVSSNLLQSLPDSIGLLL 219
           LP  F  L  LV ++LS N ++ +    +  L++       LD+S N +  + D     +
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 220 NLKVLNVSGNKLNT--LPESIARCSSLVELD------ASFNNLVCLPTNIGYGLLNLERL 271
            L  L + GN  ++  +   +   + L              NL     +I  GL ++   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 272 SIKLNKLRTF---PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN------ 322
             +L     F         + ++  +      +  L   + K  + + L++         
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP 323

Query: 323 FNDLTEL------------PETIGDLINLRELDLSNNQIRALPDTFFR---LENLTKLNL 367
             DL  L                  L +L  LDLS N +       +      +L  L+L
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 368 DQNPLVIPPMEIVN 381
             N  +I     + 
Sbjct: 384 SFNGAIIMSANFMG 397

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (255), Expect = 2e-23
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
           SL   I ++ N+        KL+ +P+ I   SS   +D SFN L  L +        L+
Sbjct: 3   SLNPCIEVVPNI-TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 270 RLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLT 327
            L +   ++ T    +   +  L  L    N +    P +   LT LE L        L 
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK--LA 117

Query: 328 ELPE-TIGDLINLRELDLSNNQIR--ALPDTFFRLENLTKLNLDQNPL 372
            L    IG LI L++L++++N I    LP  F  L NL  ++L  N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVSSNLLQ 209
             +D++    K      F  L  L +L ++ N  +     +  A    L  LD+S   L+
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 210 SLP-DSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLN 267
            +       L  L++LN+S N L  L  S   +  SL  LD SFN +      + +   +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 268 LERLSIKLNKLRTFPPSICEMRSL-KYLDAHFNELHGLPRAI 308
           L   ++  N +      ICE +   +++      L  + +  
Sbjct: 547 LAFFNLTNNSVA----CICEHQKFLQWVKEQKQFLVNVEQMT 584

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (367), Expect = 8e-38
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 22/240 (9%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVSSNLLQ 209
             ++L   ++  +  +AF  L  L  L+L  N +          GL+ + E+ +S N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 210 SL-PDSIGLLLNLKVLNVSGNKLNTL---PESIARCSSLVELDASFNNLVCLPTNIGYGL 265
            L  +S  L+ +L+ L +    L  +   P       +L  LD S NN+  +  ++  GL
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 266 LNLERLSIKLNKLRTFPPSICE---------MRSLKYLDAHFNELHGLPR-AIGKLTRLE 315
             LE L ++ N L                  +  L  L+   N    +P      L  L+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 316 VLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPDTFFR--LENLTKLNLDQNPL 372
           +++L  N   L  L      + ++L+ L+L  N I ++    F     NLT+L++  NP 
Sbjct: 564 IIDLGLNN--LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (356), Expect = 2e-36
 Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 16/236 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL 211
           E  D +  +L  +P+       +  LNL+ N L  +   +     +L  LDV  N +  L
Sbjct: 7   EVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 212 -PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
            P+    L  LKVLN+  N+L+ L + + A C++L EL    N++  +  N      NL 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 270 RLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR---AIGKLTRLEVLNLSSNFND 325
            L +  N L +    +  ++ +L+ L    N++  L      I   + L+ L LSSN   
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-- 182

Query: 326 LTEL-PETIGDLINLRELDLSNNQIRA-LPDTFF---RLENLTKLNLDQNPLVIPP 376
           + E  P     +  L  L L+N Q+   L +         ++  L+L  + L    
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  139 bits (352), Expect = 9e-36
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 8/211 (3%)

Query: 175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNT 233
               + S   L  +PD +     +  L+++ N L+ L   +      L  L+V  N ++ 
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 234 L-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSL 291
           L PE   +   L  L+   N L  L         NL  L +  N ++        + ++L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 292 KYLDAHFNELHGL-PRAIGKLTRLEVLNLSSN-FNDLTELPETIGDLINLRELDLSNNQI 349
             LD   N L         +L  L+ L LS+N    L      I    +L++L+LS+NQI
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 350 RAL-PDTFFRLENLTKLNLDQNPLVIPPMEI 379
           +   P  F  +  L  L L+   L     E 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (335), Expect = 1e-33
 Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 22/242 (9%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLL----------EAMPDSIAGLQKLEEL 201
           E   L    ++ L   +   L  +  LNL R+            +    S   L+ LE L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 202 DVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPESIA-----RCSSLVELDASFNNLV 255
           ++  N +  +  +    L+NLK L++S +  +    +         S L  L+ + N + 
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHGL-PRAIGKLT 312
            + ++    L +LE L + LN++           + ++  +   +N+   L   +   + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 313 RLEVLNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQN 370
            L+ L L      ++   P     L NL  LDLSNN I  + D     LE L  L+L  N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 371 PL 372
            L
Sbjct: 515 NL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (325), Expect = 3e-32
 Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 22/246 (8%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ-----KLEELDVSSN 206
           E +++ D  +  +    F  L  L  L+LS +       +           L  L+++ N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 207 LLQSL-PDSIGLLLNLKVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGY 263
            +  +  D+   L +L+VL++  N++      +      ++ E+  S+N  + L  N   
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 264 GLLNLERLSIKLNKLRTF---PPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNL 319
            + +L+RL ++   L+     P     +R+L  LD   N +  +    +  L +LE+L+L
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 320 SSN-------FNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNP 371
             N         +       +  L +L  L+L +N    +  + F  L  L  ++L  N 
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 372 L-VIPP 376
           L  +P 
Sbjct: 572 LNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 1e-30
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 21/238 (8%)

Query: 153 ETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQ 209
           E +DL   ++   L  + +  L  +  + LS N    +  +S A +  L+ L +    L+
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 210 SLPDSIGL---LLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYG- 264
           ++  S      L NL +L++S N +  + +  +     L  LD   NNL  L  +   G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 265 -------LLNLERLSIKLNKLRTFPPSIC-EMRSLKYLDAHFNELHGL-PRAIGKLTRLE 315
                  L +L  L+++ N     P  +  ++  LK +D   N L+ L          L+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 316 VLNLSSNFNDLTELPETI--GDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
            LNL  N   +T + + +      NL ELD+  N      ++     N         P
Sbjct: 588 SLNLQKNL--ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIP 643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 4e-29
 Identities = 55/283 (19%), Positives = 107/283 (37%), Gaps = 56/283 (19%)

Query: 153 ETVDLADRQLKLLPE---AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLL 208
           + + L++ +++ L            L  L LS N ++   P     + +L  L +++  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 209 Q-SLPDSIGL---LLNLKVLNVSGNKLNTLPESI---ARCSSLVELDASFNNLVCLPTNI 261
             SL + + L     +++ L++S ++L+T   +     + ++L  LD S+NNL  +  + 
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 262 GYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAH---------FNELHGL-PRAIGK 310
              L  LE   ++ N ++     S+  + +++YL+              L  +   +   
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 311 LTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRAL----------------- 352
           L  LE LN+  N   +  +       LINL+ L LSN+                      
Sbjct: 328 LKCLEHLNMEDND--IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 353 ------------PDTFFRLENLTKLNLDQNPL--VIPPMEIVN 381
                        D F  L +L  L+L  N +   +   E   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 6e-25
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           + +V + S  KL  +P+ +   +++  L+ + N L  LP         L  L +  N + 
Sbjct: 5   SHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 280 TFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL-PETIGDL 336
              P    ++  LK L+   NEL  L        T L  L+L SN   + ++        
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS--IQKIKNNPFVKQ 120

Query: 337 INLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPL 372
            NL  LDLS+N + +    T  +LENL +L L  N +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 25/219 (11%)

Query: 153 ETVDLAD---RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLL 208
           + + L     + +   P  F  LR L  L+LS N +  + D  + GL+KLE LD+  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 209 QSL---------PDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLP 258
             L            +  L +L +LN+  N  + +  E       L  +D   NNL  LP
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 259 TNIGYGLLNLERLSIKLNKLRTFPPSICE--MRSLKYLDAHFNELHGLPRAIG------K 310
            ++    ++L+ L+++ N + +    +     R+L  LD  FN       +I        
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

Query: 311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI 349
            T   +  LSS++  L   P        +R  D S+ + 
Sbjct: 637 ETHTNIPELSSHY--LCNTPPHYHGF-PVRLFDTSSCKD 672

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  137 bits (347), Expect = 5e-37
 Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
              +DL + ++  + +  F  L+ L +L L  N +  +     A L KLE L +S N L+
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNL--VCLPTNIGYGLL 266
            LP+   +   L+ L V  N++  + +S+    + ++ ++   N L    +      G+ 
Sbjct: 114 ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 267 NLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFND 325
            L  + I    + T P  +    SL  L    N++  +   ++  L  L  L LS N   
Sbjct: 172 KLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN--S 227

Query: 326 LTELPE-TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           ++ +   ++ +  +LREL L+NN++  +P      + +  + L  N +
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  126 bits (319), Expect = 4e-33
 Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 21/234 (8%)

Query: 153 ETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
            T+ L + ++ K+ P AF  L  L  L LS+N L+ +P+ +   + L+EL V  N +  +
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKV 136

Query: 212 PDSI-GLLLNLKVLNVSGNKLNTL---PESIARCSSLVELDASFNNLVCLPTNIGYGLLN 267
             S+   L  + V+ +  N L +      +      L  +  +  N+  +P  +     +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPS 193

Query: 268 LERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFND 325
           L  L +  NK+     +  + + +L  L   FN +  +   ++     L  L+L++N   
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--K 251

Query: 326 LTELPETIGDLINLRELDLSNNQIRALPDTFFR-------LENLTKLNLDQNPL 372
           L ++P  + D   ++ + L NN I A+    F          + + ++L  NP+
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  126 bits (319), Expect = 4e-33
 Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 21/233 (9%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL 211
           E + L+  QLK LPE     + L  L +  N +  +  S+  GL ++  +++ +N L+S 
Sbjct: 103 ERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 212 PDSIGL---LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
               G    +  L  + ++   + T+P+ +    SL EL    N +  +      GL NL
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 269 ERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLT 327
            +L +  N +             L+ L  + N+L  +P  +     ++V+ L +N  +++
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN--NIS 276

Query: 328 ELPET-------IGDLINLRELDLSNNQIRAL---PDTFFRLENLTKLNLDQN 370
            +               +   + L +N ++     P TF  +     + L   
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 11/144 (7%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDA 296
            RC   L  +  S   L  +P ++     +   L ++ NK+          +++L  L  
Sbjct: 27  FRCQCHLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 297 HFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-D 354
             N++  + P A   L +LE L LS N   L ELPE       L+EL +  N+I  +   
Sbjct: 84  INNKISKISPGAFAPLVKLERLYLSKN--QLKELPE--KMPKTLQELRVHENEITKVRKS 139

Query: 355 TFFRLENLTKLNLDQNPLVIPPME 378
            F  L  +  + L  NPL    +E
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIE 163

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  142 bits (359), Expect = 6e-37
 Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 14/233 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL- 211
           + ++L + +    P    +L+ L  L  + N       S   L  LE LD+S N L    
Sbjct: 307 QHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKG 363

Query: 212 --PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLNL 268
               S     +LK L++S N + T+  +      L  LD   +NL      ++   L NL
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 269 ERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFND 325
             L I     R     I   + SL+ L    N      LP    +L  L  L+LS     
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-- 481

Query: 326 LTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPP 376
           L +L P     L +L+ L++S+N   +L    +  L +L  L+   N ++   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (350), Expect = 1e-35
 Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 13/218 (5%)

Query: 166 PEAFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLK 222
             +   L  L  L+LSRN L        S  G   L+ LD+S N + ++  +   L  L+
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 223 VLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL-R 279
            L+   + L  +          +L+ LD S  +       I  GL +LE L +  N    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 280 TFPPSI-CEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDL 336
            F P I  E+R+L +LD    +L  L P A   L+ L+VLN+S N      L       L
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN--FFSLDTFPYKCL 517

Query: 337 INLRELDLSNNQIRALPDTFFR--LENLTKLNLDQNPL 372
            +L+ LD S N I        +    +L  LNL QN  
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (333), Expect = 2e-33
 Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 29/241 (12%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD----- 213
           D  L  + + F  L  + S +L    +E + D  +     + L++ +      P      
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 214 ---------------SIGLLLNLKVLNVSGNKLNTL---PESIARCSSLVELDASFNNLV 255
                          S   L +L+ L++S N L+      +S    +SL  LD SFN ++
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPS--ICEMRSLKYLDAHFNELHGL-PRAIGKLT 312
            + +N   GL  LE L  + + L+          +R+L YLD                L+
Sbjct: 387 TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 313 RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNP 371
            LEVL ++ N      LP+   +L NL  LDLS  Q+  L P  F  L +L  LN+  N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 372 L 372
            
Sbjct: 506 F 506

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (318), Expect = 1e-31
 Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 15/223 (6%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNL 221
           L   +F     L  L+LSR  ++ +   +   L  L  L ++ N +QSL   +   L +L
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 222 KVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCL--PTNIGYGLLNLERLSIKLNKL 278
           + L      L +L    I    +L EL+ + N +     P      L NLE L +  NK+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKI 161

Query: 279 RTFPP-SICEMRSLKY----LDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETI 333
           ++     +  +  +      LD   N ++ +     K  RL  L L +NF+ L  +   I
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 334 GDLINLRELDLSNNQIRALPD----TFFRLENLTKLNLDQNPL 372
             L  L    L   + R   +        LE L  L +++  L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 2e-28
 Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 21/228 (9%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL--PDSIGLLLN 220
           L   AF  L  L  L      L ++    I  L+ L+EL+V+ NL+QS   P+    L N
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 221 LKVLNVSGNKLNTL-PESIARCSSL----VELDASFNNLVCLPTNIGYGLLNLERLSIKL 275
           L+ L++S NK+ ++    +     +    + LD S N +  +        + L +L+++ 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRN 209

Query: 276 NKLRTF--PPSICEMRSLKYLDAHFNELHGLPR-------AIGKLTRLEVLNLSSNFNDL 326
           N          I  +  L+       E             A+  L  L +      + D 
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 327 --TELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
              ++ +    L N+    L +  I  + D F        L L     
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 4e-28
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLP 258
                      +PD   L  + K L++S N L  L   S      L  LD S   +  + 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 259 TNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEV 316
                 L +L  L +  N +++    +   + SL+ L A    L  L    IG L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 317 LNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLT----KLNLDQNP 371
           LN++ N     +LPE   +L NL  LDLS+N+I+++       L  +      L+L  NP
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 372 L-VIPP 376
           +  I P
Sbjct: 189 MNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (279), Expect = 2e-26
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 24/236 (10%)

Query: 163 KLLPEAFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLL 219
            L     G L+ L  LN++ NL+++   P+  + L  LE LD+SSN +QS+    + +L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 220 NLKV----LNVSGNKLNTLPESIARCSSLVELDASFNNL-VCLPTNIGYGLLNLERLSIK 274
            + +    L++S N +N +     +   L +L    N   + +      GL  LE   + 
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 275 LNKLRTFP----PSICEMRSLKYLDAHFNELHGL-------PRAIGKLTRLEVLNLSSNF 323
           L + R            +  L  L      L  L             LT +   +L S  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV- 292

Query: 324 NDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379
             +  + +        + L+L N +    P    +  +L +L    N       E+
Sbjct: 293 -TIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (265), Expect = 1e-24
 Identities = 47/269 (17%), Positives = 89/269 (33%), Gaps = 41/269 (15%)

Query: 153 ETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEA-MPDSIAGLQKLE----ELDVSS 205
           + +++A   ++   LPE F  L  L  L+LS N +++     +  L ++      LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 206 NLLQSLPDSIGLLLNLKVLNVSGNKLNT--LPESIARCSSLVELD------ASFNNLVCL 257
           N +  +       + L  L +  N  +   +   I   + L           +  NL   
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICE----MRSLKYLDAHFNELHGLPRAIGKLTR 313
             +   GL NL     +L  L  +   I +    + ++         +  +         
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFG 305

Query: 314 LEVLNLSSN---------FNDLTEL---------PETIGDLINLRELDLSNNQIRAL--- 352
            + L L +             L  L           +  DL +L  LDLS N +      
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 353 PDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
             + F   +L  L+L  N ++      + 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (250), Expect = 1e-22
 Identities = 47/159 (29%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 153 ETVDLADRQLKLL--PEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQ 209
           E +D     LK +     F  LR L+ L++S             GL  LE L ++ N  Q
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 210 S--LPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLL 266
              LPD    L NL  L++S  +L  L P +    SSL  L+ S NN   L T     L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 267 NLERLSIKLNKLRTFPPSICE--MRSLKYLDAHFNELHG 303
           +L+ L   LN + T      +    SL +L+   N+   
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (344), Expect = 2e-36
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             + +   ++  +  A   L  L  L L+ + +  +   +A L K+  L++ +N   S  
Sbjct: 91  TNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL 148

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +  +  L  L V+ +K+  +   IA  + L  L  ++N +  +   +   L +L   +
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLA-SLTSLHYFT 205

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
             +N++    P +  M  L  L    N++  L   +  L++L  L + +N   ++++   
Sbjct: 206 AYVNQITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQ--ISDINA- 260

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378
           + DL  L+ L++ +NQI  +      L  L  L L+ N L    ME
Sbjct: 261 VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (332), Expect = 1e-34
 Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 29/241 (12%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             + L +  +  +      L  + SLNL  N   +    ++ +  L  L V+ + ++ + 
Sbjct: 113 RELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             I  L +L  L+++ N++  +   +A  +SL    A  N +  +   +   +  L  L 
Sbjct: 172 -PIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDIT-PVA-NMTRLNSLK 227

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN-------FND 325
           I  NK+    P +  +  L +L+   N++  +  A+  LT+L++LN+ SN        N+
Sbjct: 228 IGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNN 285

Query: 326 LTEL--------------PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
           L++L               E IG L NL  L LS N I  +      L  +   +     
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344

Query: 372 L 372
           +
Sbjct: 345 I 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 2e-34
 Identities = 38/201 (18%), Positives = 81/201 (40%), Gaps = 10/201 (4%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   +   L +  +  +  +   L+ + +L V+   + S+   I  L NL+ LN++GN++
Sbjct: 21  LAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQI 78

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
             +   ++    L  L    N +  +   +   L NL  L +  + +    P +  +  +
Sbjct: 79  TDISP-LSNLVKLTNLYIGTNKITDIS-ALQ-NLTNLRELYLNEDNISDISP-LANLTKM 134

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
             L+   N        +  +T L  L ++   + + ++   I +L +L  L L+ NQI  
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTE--SKVKDVTP-IANLTDLYSLSLNYNQIED 191

Query: 352 LPDTFFRLENLTKLNLDQNPL 372
           +      L +L       N +
Sbjct: 192 IS-PLASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (292), Expect = 4e-29
 Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 11/199 (5%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             + + + ++K +      L  L SL+L+ N +E +   +A L  L       N +  + 
Sbjct: 158 NYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT 215

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +  +  L  L +  NK+  L   +A  S L  L+   N +  +   +   L  L+ L+
Sbjct: 216 -PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN-AVK-DLTKLKMLN 271

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPE 331
           +  N++      +  +  L  L  + N+L       IG LT L  L LS N   +T++  
Sbjct: 272 VGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN--HITDIRP 328

Query: 332 TIGDLINLRELDLSNNQIR 350
            +  L  +   D +N  I+
Sbjct: 329 -LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 244 LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG 303
              L      +  +  +    L    R  ++   +     +  E+ S+  L     ++  
Sbjct: 2   AATLATLPAPINQIFPDAD--LAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVAS 58

Query: 304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLT 363
           +   I  LT LE LNL+ N   +T++   + +L+ L  L +  N+I  +      L NL 
Sbjct: 59  IQ-GIEYLTNLEYLNLNGN--QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113

Query: 364 KLNLDQNPL 372
           +L L+++ +
Sbjct: 114 ELYLNEDNI 122

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (348), Expect = 4e-36
 Identities = 60/238 (25%), Positives = 90/238 (37%), Gaps = 33/238 (13%)

Query: 160 RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219
           R++ +        R    L L+   L ++P+       LE L  S N L  LP+    L 
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLK 114

Query: 220 NLKVLNVSGNKLNTLPES----------------IARCSSLVELDASFNNLVCLPTNIGY 263
           +L V N +   L+ LP                  +   S L  +D   N+L  LP     
Sbjct: 115 SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP- 173

Query: 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
              +LE ++   N+L    P +  +  L  + A  N L  LP     L  +   N     
Sbjct: 174 ---SLEFIAAGNNQL-EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN----- 224

Query: 324 NDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           N L ELPE + +L  L  +   NN ++ LPD      +L  LN+  N L   P    +
Sbjct: 225 NILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (343), Expect = 2e-35
 Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 34/238 (14%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRN-LLEAMPDSIAGL-------------QKL 198
           +        L  +P     ++       + +      P                   ++ 
Sbjct: 14  QEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73

Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP 258
            EL++++  L SLP+      +L+ L  S N L  LPE      SL+  + +   L  LP
Sbjct: 74  HELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 259 TNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLN 318
                    LE L +  N+L    P +     LK +D   N L  LP     L  +   N
Sbjct: 131 P-------LLEYLGVSNNQLEKL-PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 182

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
                N L ELPE + +L  L  +   NN ++ LPD      +L  +    N L   P
Sbjct: 183 -----NQLEELPE-LQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILEELP 231

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (337), Expect = 1e-34
 Identities = 70/264 (26%), Positives = 104/264 (39%), Gaps = 57/264 (21%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKL-------------- 198
           E +   + QL+ LPE    L  L ++    N L+ +PD    L+ +              
Sbjct: 176 EFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 234

Query: 199 -----EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNN 253
                  +   +NLL++LPD      +L+ LNV  N L  LPE      SL  LD S N 
Sbjct: 235 NLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELP---QSLTFLDVSENI 288

Query: 254 LVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTR 313
              L         NL  L+   N++R+         SL+ L+   N+L  LP    +L R
Sbjct: 289 FSGLSELPP----NLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALPPRLER 341

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE------------- 360
           L         N L E+PE      NL++L +  N +R  PD    +E             
Sbjct: 342 LIASF-----NHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 361 ---NLTKLNLDQNPLVIPPMEIVN 381
              NL +L+++ NPL   P    +
Sbjct: 394 LPQNLKQLHVETNPLREFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (334), Expect = 3e-34
 Identities = 65/241 (26%), Positives = 97/241 (40%), Gaps = 43/241 (17%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQK--------------- 197
           E++   +  L+ LPE    L  L ++    NLL+ +PD    L+                
Sbjct: 218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP 276

Query: 198 --LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLV 255
             L  LDVS N+   L +      NL  LN S N++ +L +      SL EL+ S N L+
Sbjct: 277 QSLTFLDVSENIFSGLSELPP---NLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLI 330

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLE 315
            LP         LERL    N L   P       +LK L   +N L   P     +  L 
Sbjct: 331 ELPALPP----RLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 383

Query: 316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375
           + +       L E+PE      NL++L +  N +R  PD     E++  L ++   +V P
Sbjct: 384 MNSH------LAEVPELPQ---NLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDP 431

Query: 376 P 376
            
Sbjct: 432 Y 432

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (317), Expect = 7e-32
 Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 31/232 (13%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN-LLQSLPDSIG------ 216
            +         L       + L  MP     ++   E   + +   ++ P   G      
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 217 -------LLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
                  L      L ++   L++LPE       L  L AS N+L  LP      L +L 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQ-SLKSLL 117

Query: 270 RLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTEL 329
             +  L  L   PP       L+YL    N+L  LP  +   + L+++++ +N   L +L
Sbjct: 118 VDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS--LKKL 168

Query: 330 PETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           P+      +L  +   NNQ+  LP+    L  LT +  D N L   P   ++
Sbjct: 169 PDLPP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 21/171 (12%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             ++ +  +++ L +       L  LN+S N L  +P       +LE L  S N L  +P
Sbjct: 300 YYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVP 353

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
           +      NLK L+V  N L   P+       L       ++L  +P        NL++L 
Sbjct: 354 ELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMN----SHLAEVPELPQ----NLKQLH 402

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSN 322
           ++ N LR FP       S++ L  +   +      A     +LE      +
Sbjct: 403 VETNPLREFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ---------------- 196
           E +  +   L  +PE    L+    L++  N L   PD    ++                
Sbjct: 340 ERLIASFNHLAEVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNL 254
            L++L V +N L+  PD      +++ L ++  ++    E     +  +E D   ++ 
Sbjct: 397 NLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 161 QLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL- 219
            L  +PE    L+    L++  N L   PD     + +E+L ++S  +    +       
Sbjct: 387 HLAEVPELPQNLK---QLHVETNPLREFPDIP---ESVEDLRMNSERVVDPYEFAHETTD 440

Query: 220 NLKVLNVSGNKLN 232
            L+      +  +
Sbjct: 441 KLEDDVFEHHHHH 453

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  134 bits (339), Expect = 4e-36
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL 211
             +    + L  +P           L L  N L+++P  +   L +L +L +SSN L   
Sbjct: 10  TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 212 PDSIGL---LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP-TNIGYGLLN 267
                      +LK L++S N + T+  +      L  LD   +NL  +   ++   L N
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 268 LERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNEL--HGLPRAIGKLTRLEVLNLSSNFN 324
           L  L I     R     I   + SL+ L    N    + LP    +L  L  L+LS    
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-- 185

Query: 325 DLTELPE-TIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPL 372
            L +L       L +L+ L++S+N   +L    ++ L +L  L+   N +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  134 bits (339), Expect = 5e-36
 Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 14/233 (6%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLL---EAMPDSIAGLQKLEELDVSSNL 207
              ++L   +L+ LP   F +L  L  L+LS N L        S  G   L+ LD+S N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 208 LQSLPDSIGLLLNLKVLNVSGNKLNTLPESIA--RCSSLVELDASFNNLVCLPTNIGYGL 265
           + ++  +   L  L+ L+   + L  + E        +L+ LD S  +       I  GL
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 266 LNLERLSIKLNK-LRTFPPSI-CEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSN 322
            +LE L +  N     F P I  E+R+L +LD    +L  L   A   L+ L+VLN+S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

Query: 323 FNDLTELPE-TIGDLINLRELDLSNNQIRALPDTFFR--LENLTKLNLDQNPL 372
             +   L       L +L+ LD S N I        +    +L  LNL QN  
Sbjct: 210 --NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 5e-25
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 31/202 (15%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIA--GLQKLEELDVSSNLLQSLPD 213
           DL+   +  +   F  L  L  L+   + L+ M +      L+ L  LD+S    +   +
Sbjct: 84  DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 214 SI-GLLLNLKVLNVSGNKLNT--LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
            I   L +L+VL ++GN      LP+      +L  LD S   L  L       L +L+ 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
           L++  N   +                              L  L+VL+ S   N +    
Sbjct: 204 LNMSHNNFFSLDTF----------------------PYKCLNSLQVLDYSL--NHIMTSK 239

Query: 331 ETI--GDLINLRELDLSNNQIR 350
           +        +L  L+L+ N   
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 4/97 (4%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSI-GLLLNL 221
            LP+ F  LR L  L+LS+  LE +  +    L  L+ L++S N   SL       L +L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 222 KVLNVSGNKLNTLPESI--ARCSSLVELDASFNNLVC 256
           +VL+ S N + T  +       SSL  L+ + N+  C
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  132 bits (333), Expect = 5e-35
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 12/227 (5%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQ 209
              +DL +  +  L +  F  L+ L +L L  N +  + + + + L+KL++L +S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIG-YGLLN 267
            +P    L  +L  L +  N++  +P+ + +   ++  ++   N L       G +  L 
Sbjct: 116 EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 268 LERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDL 326
           L  L I   KL   P  +    +L  L    N++  +    + + ++L  L L  N   +
Sbjct: 174 LNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN--QI 229

Query: 327 TELPE-TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
             +   ++  L  LREL L NN++  +P     L+ L  + L  N +
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  126 bits (319), Expect = 4e-33
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 20/233 (8%)

Query: 153 ETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
             + L + ++ K+  +AF  LR L  L +S+N L  +P ++     L EL +  N ++ +
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKV 138

Query: 212 PDSI-GLLLNLKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
           P  +   L N+  + + GN L              L  L  S   L  +P ++      L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL---PETL 195

Query: 269 ERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDL 326
             L +  NK++      +     L  L    N++  +   ++  L  L  L+L +N   L
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KL 253

Query: 327 TELPETIGDLINLRELDLSNNQIRALPDTFF-------RLENLTKLNLDQNPL 372
           + +P  + DL  L+ + L  N I  +    F       +      ++L  NP+
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (311), Expect = 6e-32
 Identities = 45/232 (19%), Positives = 89/232 (38%), Gaps = 20/232 (8%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL 211
           + + ++   L  +P        LV L +  N +  +P  + +GL+ +  +++  N L++ 
Sbjct: 105 QKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 212 PDSIGLL--LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
               G    L L  L +S  KL  +P+ +    +L EL    N +  +          L 
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 270 RLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328
           RL +  N++R         + +L+ L    N+L  +P  +  L  L+V+ L +N   +T+
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN--ITK 278

Query: 329 LPETI-------GDLINLRELDLSNNQIRAL---PDTFFRLENLTKLNLDQN 370
           +                   + L NN +      P TF  + +   +     
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (278), Expect = 2e-27
 Identities = 41/208 (19%), Positives = 77/208 (37%), Gaps = 14/208 (6%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQ--KLEELDVSSNLLQ 209
             + + D +++ +P+  F  LR +  + +  N LE            KL  L +S   L 
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
            +P    L   L  L++  NK+  +    + R S L  L    N +  +       L  L
Sbjct: 186 GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-------RAIGKLTRLEVLNLSS 321
             L +  NKL   P  + +++ L+ +  H N +  +            K      ++L +
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 322 NFNDLTEL-PETIGDLINLRELDLSNNQ 348
           N     E+ P T   + +   +   N +
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 29/154 (18%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           +L+V+  S   L  +P+ I+       LD   N++  L  +   GL +L  L +  NK+ 
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 280 TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINL 339
                                     +A   L +L+ L +S   N L E+P  +    +L
Sbjct: 92  KIH----------------------EKAFSPLRKLQKLYISK--NHLVEIPPNL--PSSL 125

Query: 340 RELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL 372
            EL + +N+IR +P   F  L N+  + +  NPL
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL 372
           L V+  S     L  +P+ I    +   LDL NN I  L  D F  L++L  L L  N +
Sbjct: 35  LRVVQCSDL--GLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 373 -VIPP 376
             I  
Sbjct: 91  SKIHE 95

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (342), Expect = 7e-35
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 18/219 (8%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL----PDSIGLL 218
            L   +  L  +  + +  + +  +P S    L+ LE LD+S NL+           G  
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 219 LNLKVLNVSGNKLNTLPE---SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL 275
            +L+ L +S N L ++ +    +    +L  LD S N    +P +       +  L++  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPEKMRFLNLSS 419

Query: 276 NKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD 335
             +R     I   ++L+ LD   N L         L RL+ L +S N   L  LP+    
Sbjct: 420 TGIRVVKTCI--PQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNK--LKTLPDASL- 471

Query: 336 LINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPLV 373
              L  + +S NQ++++PD  F  L +L K+ L  NP  
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (336), Expect = 4e-34
 Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 16/213 (7%)

Query: 175 LVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSIG-LLLNLKVLNVSGNKLN 232
           +  L++ +  L     ++ + L+K++ + V ++ +  +P S    L +L+ L++S N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 233 TL----PESIARCSSLVELDASFNNLVCLPTNIGY--GLLNLERLSIKLNKLRTFPPSIC 286
                         SL  L  S N+L  +         L NL  L I  N     P S  
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407

Query: 287 EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN 346
               +++L+     +  +   I     LEVL++S+N  +L         L  L+EL +S 
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNN--NLDSFSL---FLPRLQELYISR 460

Query: 347 NQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI 379
           N+++ LPD       L  + + +N L   P  I
Sbjct: 461 NKLKTLPDASL-FPVLLVMKISRNQLKSVPDGI 492

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (299), Expect = 3e-29
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 9/188 (4%)

Query: 201 LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPT 259
            D  S    S+P   GL   +K L++S NK+  +    +  C++L  L    + +  +  
Sbjct: 10  CDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 260 NIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR--AIGKLTRLEV 316
           +  Y L +LE L +  N L +   S    + SLKYL+   N    L        LT L+ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 317 LNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVI 374
           L + +     +E+       L +L EL++    +R     +   + ++  L L  +    
Sbjct: 128 LRIGNV-ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 375 PPMEIVNK 382
                 + 
Sbjct: 187 LLEIFADI 194

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 3e-28
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 28/255 (10%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIA------------GLQKLE 199
             + L   +   L E     L  +  L L    L     S                +   
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIA---------RCSSLVELDAS 250
             D S N L  L   I  L  ++  + + N L     S +            ++  L   
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 251 FNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGL----P 305
              L    + +   L  ++R++++ +K+   P S  + ++SL++LD   N +        
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 306 RAIGKLTRLEVLNLSSN-FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTK 364
              G    L+ L LS N    + +  E +  L NL  LD+S N    +PD+    E +  
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414

Query: 365 LNLDQNPLVIPPMEI 379
           LNL    + +    I
Sbjct: 415 LNLSSTGIRVVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 3e-27
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 30/248 (12%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDS--IAGLQKLEELDVSS-NLL 208
           E +DL+D  L  L    FG L  L  LNL  N  + +  +     L  L+ L + +    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 209 QSLP-DSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLL 266
             +       L +L  L +    L     +S+     +  L    +    L       L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 267 NLERLSIKLNKLRTFPPSI------------CEMRSLKYLDAHFNELHGLPRAIGKLTRL 314
           ++  L ++   L  F  S                R     D  FNEL  L R I +L+ +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 315 EVLNLSSNFNDLTELPETIGD---------LINLRELDLSNNQIRALPDTFFR-LENLTK 364
           E  + +   N L +   +  D          + +R L +    +     T +  LE + +
Sbjct: 257 EFDDCT--LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 365 LNLDQNPL 372
           + ++ + +
Sbjct: 315 ITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 1e-26
 Identities = 56/271 (20%), Positives = 93/271 (34%), Gaps = 50/271 (18%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
           ++++DL+  ++  +          L  L L  + +  +       L  LE LD+S N L 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 210 SLPDS-IGLLLNLKVLNVSGNKLNTLPES--IARCSSLVELDASFNN-LVCLPTNIGYGL 265
           SL  S  G L +LK LN+ GN   TL  +      ++L  L          +      GL
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 266 LNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPRAIGK-LTRLEVLNLSSN- 322
            +L  L IK   LR +   S+  +R + +L  H +E   L       L+ +  L L    
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 323 --------------------------------FNDLTELPETIGDLINLRELDLSNNQIR 350
                                           FN+L +L   I +L  +   D + N + 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 351 ALPD---------TFFRLENLTKLNLDQNPL 372
                               + +L++ Q  L
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (260), Expect = 4e-24
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 21/227 (9%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGL---------LLNLK 222
            RG V  + S N L  +   I  L ++E  D + N L     S             + ++
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 223 VLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
            L++    L     ++ +    +  +    + +  +P +    L +LE L +  N +   
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 282 PPSICE----MRSLKYLDAHFNELHGLPRAIG---KLTRLEVLNLSSNFNDLTELPETIG 334
                       SL+ L    N L  + +       L  L  L++S N      +P++  
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT--FHPMPDSCQ 407

Query: 335 DLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
               +R L+LS+  IR +     +   L  L++  N L    + +  
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQ--TLEVLDVSNNNLDSFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.6 bits (238), Expect = 3e-21
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT 280
             V +       ++P  +   +++  LD SFN +  +         NL+ L +K +++ T
Sbjct: 7   SGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 281 FPPSICE-MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPET--IGDL 336
                   + SL++LD   N L  L     G L+ L+ LNL    N    L  T    +L
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM--GNPYQTLGVTSLFPNL 122

Query: 337 INLRELDLS-NNQIRALPDTFFR-LENLTKLNLDQNPL 372
            NL+ L +        +    F  L +L +L +    L
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 7e-18
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFN 299
           C +    D    +   +P+ +      ++ L +  NK+       +    +L+ L    +
Sbjct: 4   CDASGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDT-- 355
            ++ +   A   L  LE L+LS   N L+ L     G L +L+ L+L  N  + L  T  
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSD--NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 356 FFRLENLTKLNLDQNPL 372
           F  L NL  L +     
Sbjct: 119 FPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 20/130 (15%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI------------------AG 194
            ++D++      +P++      +  LNLS   +  +   I                    
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF 449

Query: 195 LQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNN 253
           L +L+EL +S N L++LPD+  L   L V+ +S N+L ++P+ I  R +SL ++    N 
Sbjct: 450 LPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 254 LVCLPTNIGY 263
             C    I Y
Sbjct: 509 WDCSCPRIDY 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (339), Expect = 2e-34
 Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 12/235 (5%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           V +  L    ++ + + F    G   L L        P     L+ L+ L  +SN   + 
Sbjct: 284 VSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNA 340

Query: 212 PDSIGLLLNLKVLNVSGNKLNTL---PESIARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
              + L  +L+ L++S N L+      +S    +SL  LD SFN ++ + +N   GL  L
Sbjct: 341 FSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQL 398

Query: 269 ERLSIKLNKLRTFPPSI--CEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFND 325
           E L  + + L+          +R+L YLD                L+ LEVL ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 326 LTELPETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPLVIPPMEI 379
              LP+   +L NL  LDLS  Q+  L  T F  L +L  LN+  N L   P  I
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 1e-32
 Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 33/228 (14%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELDVSSNLLQ 209
           + +     +      +   L  L  L+LSRN L        S  G   L+ LD+S N + 
Sbjct: 328 KRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
           ++  +   L  L+ L+   + L  + E              F +L            NL 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-----------FLSLR-----------NLI 424

Query: 270 RLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFNDL 326
            L I     R     I   + SL+ L    N      LP    +L  L  L+LS     L
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--L 482

Query: 327 TELPETI-GDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
            +L  T    L +L+ L++++NQ++++PD  F RL +L K+ L  NP 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (312), Expect = 7e-31
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP 212
           T    +     +P+         +L+LS N L  +   S     +L+ LD+S   +Q++ 
Sbjct: 11  TYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 213 -DSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             +   L +L  L ++GN + +L     +  SSL +L A   NL  L       L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 271 LSIKLNKLRTF--PPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNF--ND 325
           L++  N +++F  P     + +L++LD   N++  +    +  L ++ +LNLS +   N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 326 LTELPETIGDLINLRELDLSNNQIRA--LPDTFFRLENLTKLNLDQNPL 372
           +  +       I L +L L NN      +      L  L    L     
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (306), Expect = 5e-30
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 17/247 (6%)

Query: 152 VETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQ 209
            + +DL+   L+ L   +F     L  L+LSR  ++ +   +   L  L  L ++ N +Q
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 210 SLPDSI-GLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIG-YGLL 266
           SL       L +L+ L      L +L    I    +L EL+ + N +           L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 267 NLERLSIKLNKLRTFPP-SICEMRSLKY----LDAHFNELHGLPRAIGKLTRLEVLNLSS 321
           NLE L +  NK+++     +  +  +      LD   N ++ +     K  RL  L L +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 322 NFNDLTELPETIGDLINLRELDL------SNNQIRALP-DTFFRLENLTKLNLDQNPLVI 374
           NF+ L  +   I  L  L    L      +   +          L NLT        L  
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 375 PPMEIVN 381
              +I++
Sbjct: 270 YLDDIID 276

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  111 bits (279), Expect = 2e-26
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 11/184 (5%)

Query: 202 DVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTN 260
                    +PD   L  + K L++S N L  L   S      L  LD S   +  +   
Sbjct: 13  QCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 261 IGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLN 318
               L +L  L +  N +++        + SL+ L A    L  L    IG L  L+ LN
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLT----KLNLDQNPL- 372
           ++ N     +LPE   +L NL  LDLS+N+I+++       L  +      L+L  NP+ 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 373 VIPP 376
            I P
Sbjct: 191 FIQP 194

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (258), Expect = 9e-24
 Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 23/235 (9%)

Query: 161 QLKLLPEAFGRLRGLVSLNLSRNLLEAMPD----SIAGLQKLEELDVSSNLLQSL----- 211
            L ++      L GL    L         +      + L+ L  L +    L  L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 212 --PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
              D    L N+   ++    +  +    +       L+         PT     L +L+
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTL---KLKSLK 328

Query: 270 RLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL---PRAIGKLTRLEVLNLSSNFNDL 326
           RL+   NK       + ++ SL++LD   N L       ++    T L+ L+LS N   +
Sbjct: 329 RLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--GV 385

Query: 327 TELPETIGDLINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPLVIPPMEI 379
             +      L  L  LD  ++ ++ + +   F  L NL  L++      +    I
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (255), Expect = 2e-23
 Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 19/233 (8%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLL--EAMPDSIAGLQKLEELDVSSNLLQSL 211
           ++DL+   +  +     +   L  L L  N      M   I GL  LE   +     ++ 
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 212 PD----SIGLLLNLKVLNVSGNKLNTLPESI-------ARCSSLVELDASFNNLVCLPTN 260
            +        L  L  L +   +L  L   +          +++         +  +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 261 IGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLS 320
                   + L +   K   FP    +++SLK L    N+       +  L  LE L+LS
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLS 355

Query: 321 SN-FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
            N  +      ++     +L+ LDLS N +  +   F  LE L  L+   + L
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 2e-23
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIA--GLQKLEELDVSSNLLQS 210
           + +DL+   +  +   F  L  L  L+   + L+ M +      L+ L  LD+S    + 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 211 LPDSI-GLLLNLKVLNVSGNKL--NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLN 267
             + I   L +L+VL ++GN    N LP+      +L  LD S   L  L       L +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 268 LERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLPRAIGKLTR 313
           L+ L++  N+L++ P  I   + SL+ +  H N        I  L+R
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 3e-23
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 41/269 (15%)

Query: 153 ETVDLADRQLKLL--PEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLE----ELDVSS 205
           + +++A   ++    PE F  L  L  L+LS N ++++    +  L ++      LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 206 NLLQSLPDSIGLLLNLKVLNVSGNKL--NTLPESIARCSSLVELD------ASFNNLVCL 257
           N +  +       + L  L +  N    N +   I   + L           +  NL   
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICE----MRSLKYLDAHFNELHGLPRAIG--KL 311
             +   GL NL     +L  L  +   I +    + ++         +  +         
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 312 TRLEVLNLSSN----------------FNDLTELPETIGDLINLRELDLSNNQIRAL--- 352
             LE++N                     N        +  L +L  LDLS N +      
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCC 365

Query: 353 PDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
             + F   +L  L+L  N ++      + 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  128 bits (323), Expect = 4e-34
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP 212
           T     + L+ +P           + L  N +  +P  S    + L  L + SN+L  + 
Sbjct: 15  TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 213 DSI-GLLLNLKVLNVSGN-KLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
            +    L  L+ L++S N +L ++  +       L  L      L  L   +  GL  L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 270 RLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLT 327
            L ++ N L+  P      + +L +L  H N +  +P  A   L  L+ L L  N   + 
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN--RVA 190

Query: 328 ELPE-TIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV 373
            +      DL  L  L L  N + ALP +    L  L  L L+ NP V
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (263), Expect = 1e-25
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 11/180 (6%)

Query: 204 SSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIG 262
               LQ++P   G+    + + + GN+++ +P +    C +L  L    N L  +     
Sbjct: 19  PQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 263 YGLLNLERLSIKLN-KLRTFPPSI-CEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNL 319
            GL  LE+L +  N +LR+  P+    +  L  L      L  L       L  L+ L L
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 320 SSNFNDLTELPETI-GDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPL-VIPP 376
             N   L  LP+    DL NL  L L  N+I ++P+  F  L +L +L L QN +  + P
Sbjct: 137 QDN--ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 240 RCSS--LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDA 296
            C +   V        L  +P  I       +R+ +  N++   P +     R+L  L  
Sbjct: 7   VCYNEPKVTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 297 HFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP- 353
           H N L  +   A   L  LE L+LS N   L  +   T   L  L  L L    ++ L  
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDN-AQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 354 DTFFRLENLTKLNLDQNPL-VIPP 376
             F  L  L  L L  N L  +P 
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPD 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 8e-34
 Identities = 48/231 (20%), Positives = 105/231 (45%), Gaps = 11/231 (4%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           E++   + Q+  +    G L  L  L+L+ N L+    ++A L  L +LD+++N + +L 
Sbjct: 202 ESLIATNNQISDIT-PLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLA 259

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +  L  L  L +  N+++ +   +A  ++L  L+ + N L  +   I   L NL  L+
Sbjct: 260 P-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS-PIS-NLKNLTYLT 315

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
           +  N +    P +  +  L+ L  + N++  +  ++  LT +  L+   N   +++L   
Sbjct: 316 LYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN--QISDLTP- 370

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKG 383
           + +L  + +L L++      P  +    ++     +    +I P  I + G
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG 421

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 3e-32
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 29/240 (12%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           V T+      +K + +    L  L  +N S N L  +   +  L KL ++ +++N +  +
Sbjct: 48  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP-----TNIGY--- 263
              +  L NL  L +  N++  +   +   ++L  L+ S N +  +      T++     
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 264 -----------GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLT 312
                       L  LERL I  NK+      + ++ +L+ L A  N++  +   +G LT
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDIT-PLGILT 221

Query: 313 RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
            L+ L+L+   N L ++  T+  L NL +LDL+NNQI  L      L  LT+L L  N +
Sbjct: 222 NLDELSLNG--NQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (303), Expect = 6e-30
 Identities = 43/201 (21%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   +   L +  +     S   L ++  L      ++S+   +  L NL  +N S N+L
Sbjct: 23  LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL 80

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
             +   +   + LV++  + N +  +   +   L NL  L++  N++    P +  + +L
Sbjct: 81  TDITP-LKNLTKLVDILMNNNQIADIT-PLA-NLTNLTGLTLFNNQITDIDP-LKNLTNL 136

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
             L+   N +  +  A+  LT L+ L+  +   DL    + + +L  L  LD+S+N++  
Sbjct: 137 NRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDL----KPLANLTTLERLDISSNKVSD 191

Query: 352 LPDTFFRLENLTKLNLDQNPL 372
           +     +L NL  L    N +
Sbjct: 192 IS-VLAKLTNLESLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (297), Expect = 4e-29
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           + + L   QLK +      L  L  L+L+ N +  +   ++GL KL EL + +N + ++ 
Sbjct: 224 DELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNIS 281

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +  L  L  L ++ N+L  +   I+   +L  L   FNN+  +   +   L  L+RL 
Sbjct: 282 -PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS-PVS-SLTKLQRLF 337

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
              NK+ +   S+  + ++ +L A  N++  L   +  LTR+  L L+      T  P  
Sbjct: 338 FYNNKV-SDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ--AWTNAPVN 393

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
               +++     +       P T     + T+ ++  N      
Sbjct: 394 YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 1e-28
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 13/221 (5%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
                L    +     +   L  + +L   R  ++   D +  L  L +++ S+N L  +
Sbjct: 26  KMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDI 83

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
              +  L  L  + ++ N++  +   +A  ++L  L    N +  +   +   L NL RL
Sbjct: 84  T-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-PLK-NLTNLNRL 139

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +  N +      +  + SL+ L          P  +  LT LE L++SS  N ++++  
Sbjct: 140 ELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISS--NKVSDISV 194

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
            +  L NL  L  +NNQI  +      L NL +L+L+ N L
Sbjct: 195 -LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (287), Expect = 8e-28
 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 9/218 (4%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             +DLA+ Q+  L      L  L  L L  N +  +   +AGL  L  L+++ N L+ + 
Sbjct: 246 TDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS 303

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             I  L NL  L +  N ++ +   ++  + L  L    N +  +  ++   L N+  LS
Sbjct: 304 -PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLA-NLTNINWLS 359

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
              N++    P +  +  +  L  +       P        + + N   N       P T
Sbjct: 360 AGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKAN--VSIPNTVKNVTGALIAPAT 416

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
           I D  +  E D++ N      +  +       +     
Sbjct: 417 ISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 9/179 (5%)

Query: 198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCL 257
           L    ++ +   +   +   L       +    +     S      +  L A    +  +
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI 61

Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVL 317
              + Y L NL +++   N+L    P +  +  L  +  + N++  +   +  LT L  L
Sbjct: 62  D-GVEY-LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGL 117

Query: 318 NLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
            L    N +T++   + +L NL  L+LS+N I  +      L +L +L+       + P
Sbjct: 118 TLF--NNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 1/101 (0%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             +     Q+  L      L  +  L L+       P +      +     +       P
Sbjct: 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNN 253
            +I    +    +++ N  +   E     S  V +      
Sbjct: 415 ATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (337), Expect = 9e-34
 Identities = 57/249 (22%), Positives = 93/249 (37%), Gaps = 28/249 (11%)

Query: 152 VETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
           V  +DL+   +  L    F  L+ L  LNL+ N +  + D    GL  L+ L++S NLL 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 210 SLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLP--------- 258
            L  S    L  +  +++  N +  + +        L  LD   N L  +          
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 259 ------TNIGYGLLNLERLSIKLNKLRTFPPS--ICEMRSLKYLDAHFNELHGLPR--AI 308
                   +    L    + +  N+L        +  +  L+ L  + N           
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 309 GKLTRLEVLNLSSN---FNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLT 363
            +   LE L L  N       TEL  +    L +L+ L L++N + +LP   F  L  L 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

Query: 364 KLNLDQNPL 372
            L+L+ N L
Sbjct: 508 GLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (328), Expect = 1e-32
 Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 40/261 (15%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
           ++ ++LA  ++  + + AF  L  L  LNLS NLL  +  S   GL K+  +D+  N + 
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 210 SLPDSI-GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP---------- 258
            + D     L  L+ L++  N L T+        S+ ++  S N LV LP          
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 259 ------TNIGY-----GLLNLERLSIKLNKLRTFPPS--ICEMRSLKYLDAHFNELHGL- 304
                  N+        + +L+ L +  N+  +        E  SL+ L    N L    
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 305 -----PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFR 358
                      L+ L+VL L+ N   L  LP      L  LR L L++N++  L      
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL- 524

Query: 359 LENLTKLNLDQNPLVIPPMEI 379
             NL  L++ +N L+ P  ++
Sbjct: 525 PANLEILDISRNQLLAPNPDV 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 2e-27
 Identities = 49/241 (20%), Positives = 99/241 (41%), Gaps = 15/241 (6%)

Query: 152 VETVDLADRQLKLLPE-AFGRLR--GLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNL 207
           +         +K   +  F  L    +  L+LS   + ++   +   L+ L+ L+++ N 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 208 LQSLPDSI-GLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGL 265
           +  + D     L NL+VLN+S N L  L   +      +  +D   N++  +       L
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 266 LNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND 325
             L+ L ++ N L T    I  + S+  +    N+L  LP+         +++LS N  +
Sbjct: 362 EKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLE 414

Query: 326 LTELPETIGDLINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPLVIPPMEIVNKG 383
             ++   +  + +L+ L L+ N+  +     T     +L +L L +N L +     +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 384 V 384
           V
Sbjct: 475 V 475

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (266), Expect = 1e-24
 Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 33/258 (12%)

Query: 152 VETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVSSNLL 208
            E + L+   +  +   +F  L  L  L L           ++   L  L  LD+ S+ +
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 209 QSLPDSI-GLLLNLKVLNVSGNKLNTL---PESIARCSSLVELDASFNNLVCLPTNIG-Y 263
             L       L +L  L +    L+             +L  LD S N +  L  +    
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 264 GLLNLERLSIKLNKLRTFPPSI---CEMRSLKYLDAHFNELHGLP-------RAIGKLTR 313
            L +L+ +    N++           + ++L +     N L+              +   
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 314 LEVLNLSSN----------FNDLTELPET-IGDLINLRELDLSNNQIRALPDTFFR---L 359
           LE+L++S N           N +++     +    ++       + I+      F     
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 360 ENLTKLNLDQNPLV-IPP 376
            ++  L+L    +  +  
Sbjct: 266 SSVRHLDLSHGFVFSLNS 283

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  104 bits (261), Expect = 4e-24
 Identities = 51/274 (18%), Positives = 98/274 (35%), Gaps = 60/274 (21%)

Query: 153 ETVDLADRQLKLLPE--AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQK------------ 197
             +DL+  Q++ L    +FG+L  L S++ S N +  +    +  LQ             
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 198 --------------------LEELDVSSNLLQSLPD-------------SIGLLLNLKVL 224
                               LE LDVS N                    S+ L  ++   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 225 NVSGNKLNTLPESI---ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
               + +    ++       SS+  LD S   +  L + +   L +L+ L++  NK+   
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 282 PPSI-CEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLIN 338
                  + +L+ L+  +N L  L       L ++  ++L    N +  + + T   L  
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK--NHIAIIQDQTFKFLEK 363

Query: 339 LRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           L+ LDL +N +  +      + ++  + L  N L
Sbjct: 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (255), Expect = 3e-23
 Identities = 46/253 (18%), Positives = 82/253 (32%), Gaps = 32/253 (12%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL 211
                    L  +P+    L     L LS N +  +   S   L++L+ L++ S      
Sbjct: 7   RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 212 --PDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNL--VCLPTNIGYGLL 266
              ++   L NL++L++  +K+  L          L EL   F  L    L       L 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 267 NLERLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNF 323
            L RL +  N++R+     S  ++ SLK +D   N++  +    +  L    +   S   
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 324 NDLTELPETI-------GDLINLRELDLSNNQIRALPD-------------TFFRLENLT 363
           N L                 + L  LD+S N                    +     ++ 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 364 KLNLDQNPLVIPP 376
                 + +  P 
Sbjct: 244 GAGFGFHNIKDPD 256

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  101 bits (252), Expect = 7e-23
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 23/226 (10%)

Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKLNTL-- 234
                  L  +P     L   E L +S N ++++   S   L  L++L +          
Sbjct: 9   AFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 235 PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF---PPSICEMRSL 291
            E+     +L  LD   + +  L  +   GL +L  L +    L            +++L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 292 KYLDAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTELPETIGD---LINLRELDLSN 346
             LD   N++  L    + GKL  L+ ++ SSN   +  + E   +      L    L+ 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ--IFLVCEHELEPLQGKTLSFFSLAA 183

Query: 347 NQIRALPDTFF-------RLENLTKLNLDQNPLVIPPMEIVNKGVE 385
           N + +     +       R   L  L++  N   +      +  + 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 43/226 (19%), Positives = 79/226 (34%), Gaps = 16/226 (7%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--IAGLQKLEELDVSSNLLQS 210
             + L+  +L  LP+          ++LS N LE +     +  +  L+ L ++ N   S
Sbjct: 384 PDIFLSGNKLVTLPKINLTAN---LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 211 LPDS--IGLLLNLKVLNVSGNKLNTLPES------IARCSSLVELDASFNNLVCLPTNIG 262
                      +L+ L +  N L    E+          S L  L  + N L  LP  + 
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 263 YGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322
             L  L  LS+  N+L     +     +L+ LD   N+L      +     L VL+++ N
Sbjct: 501 SHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDV--FVSLSVLDITHN 557

Query: 323 FNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLD 368
                    T  + +N   + ++                ++  +L 
Sbjct: 558 KFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  123 bits (311), Expect = 2e-32
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 9/204 (4%)

Query: 177 SLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTL 234
           +L+LS N L  +   S     +L+ LD+S   +Q++ D     L +L  L ++GN + +L
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 235 PESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICE-MRSL 291
                +  SSL +L A   NL  L       L  L+ L++  N +++F  P     + +L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 292 KYLDAHFNELHGLP-RAIGKLTRLEVLN--LSSNFNDLTELPETIGDLINLRELDLSNNQ 348
           ++LD   N++  +    +  L ++ +LN  L  + N +  +       I L+EL L  NQ
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211

Query: 349 IRALPD-TFFRLENLTKLNLDQNP 371
           ++++PD  F RL +L K+ L  NP
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 95.0 bits (237), Expect = 3e-22
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 198 LEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLV 255
            + LD+S N L+ L   S      L+VL++S  ++ T+ +      S L  L  + N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLPR--AIGKLT 312
            L      GL +L++L      L +        +++LK L+   N +           LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 313 RLEVLNLSSNFNDLTELPETIGD-LINLRELDL----SNNQIRALPDTFFRLENLTKLNL 367
            LE L+LSS  N +  +  T    L  +  L+L    S N +  +    F+   L +L L
Sbjct: 150 NLEHLDLSS--NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 368 DQNPL-VIPP 376
           D N L  +P 
Sbjct: 208 DTNQLKSVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 31/178 (17%)

Query: 204 SSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIG 262
                  +PD   L  + K L++S N L  L          L  LD S   +  +     
Sbjct: 15  MELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 263 YGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN 322
             L +L  L +  N +++                 F+           L+ L+ L     
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGA------------FS----------GLSSLQKLVAVET 110

Query: 323 FNDLTELPE-TIGDLINLRELDLSNNQIRALP--DTFFRLENLTKLNLDQNPL-VIPP 376
             +L  L    IG L  L+EL++++N I++    + F  L NL  L+L  N +  I  
Sbjct: 111 --NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 14/150 (9%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQ 209
           + +   +  L  L     G L+ L  LN++ NL+++  +P+  + L  LE LD+SSN +Q
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 210 SLPDSI-----GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG 264
           S+  +       + L    L++S N +N +     +   L EL    N L  +P  I   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
           L +L+++ +  N      P  C    + YL
Sbjct: 223 LTSLQKIWLHTN------PWDCSCPRIDYL 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  124 bits (313), Expect = 4e-32
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 156 DLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPD 213
           DL++ ++  +      R   L +L L+ N +  + +   + L  LE LD+S N L +L  
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117

Query: 214 SI-GLLLNLKVLNVSGNKLNTLPESIA--RCSSLVELDASFNN-LVCLPTNIGYGLLNLE 269
           S    L +L  LN+ GN   TL E+      + L  L     +    +      GL  LE
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 270 RLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNF---N 324
            L I  + L+++ P S+  ++++ +L  H  +   L    +   + +E L L        
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 325 DLTELPETIGD----LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
             +EL     +        R + +++  +  +     ++  L +L   +N L
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  122 bits (307), Expect = 3e-31
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 15/235 (6%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           + + L    +  + E +F  L  L  L+LS N L  +  S    L  L  L++  N  ++
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 211 LPDSI--GLLLNLKVLNVSGN-KLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLL 266
           L ++     L  L++L V        +     A  + L EL+   ++L          + 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 267 NLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLPR------AIGKLTRLEVL-N 318
           N+  L + + +             S++ L+    +L               L +     N
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPL 372
           +      L ++ + +  +  L EL+ S NQ++++PD  F RL +L K+ L  NP 
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (258), Expect = 1e-24
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 12/216 (5%)

Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLP 235
               S   L ++P  +   + ++ LD+S+N +  + +S     +NL+ L ++ N +NT+ 
Sbjct: 35  ICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 236 ESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC--EMRSLK 292
           E   +   SL  LD S+N L  L ++    L +L  L++  N  +T   +     +  L+
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 293 YLDAHFNE-LHGLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQI 349
            L     +    +  +    LT LE L + ++  DL     +++  + N+  L L   Q 
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS--DLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 350 RALPDTFF-RLENLTKLNLDQNPLVIPPMEIVNKGV 384
             L + F     ++  L L    L       ++ G 
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.0 bits (247), Expect = 4e-23
 Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLP 212
               +   L  +P        + SL+LS N +  + +S       L+ L ++SN + ++ 
Sbjct: 35  ICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 213 DSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCL-PTNIGYGLLNLE 269
           +     L +L+ L++S N L+ L  S     SSL  L+   N    L  T++   L  L+
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 270 RLSIKLN-KLRTFPPSI-CEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDL 326
            L +                +  L+ L+   ++L      ++  +  +  L L       
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK--QH 210

Query: 327 TELPETIGD-LINLRELDLSNNQIRALP---------DTFFRLENLTKLNLDQNPLVIPP 376
             L E   D   ++  L+L +  +             ++  +      + +    L    
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 17/153 (11%)

Query: 153 ETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           E +++    L+    ++   ++ +  L L       + +        +E L++    L +
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 211 LP---------DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNI 261
                      +S+      + + ++   L  + + + + S L+EL+ S N L  +P  I
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYL 294
              L +L+++ +  N         C    + YL
Sbjct: 297 FDRLTSLQKIWLHTNPWD------CSCPRIDYL 323

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  114 bits (287), Expect = 5e-29
 Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 29/221 (13%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL 211
             V+   R L  LP      +    L+LS NLL     +      +L +L++    L  L
Sbjct: 13  LEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
                L   L  L++S N+L +LP       +L  LD SFN L  LP     GL  L+ L
Sbjct: 71  QVDGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +K N+L+T PP +                           +LE L+L++  N+LTELP 
Sbjct: 130 YLKGNELKTLPPGL------------LT----------PTPKLEKLSLAN--NNLTELPA 165

Query: 332 TIGD-LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
            + + L NL  L L  N +  +P  FF    L    L  NP
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  110 bits (276), Expect = 2e-27
 Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 10/179 (5%)

Query: 198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVC 256
             E++     L +LP    L  +  +L++S N L T   +     + L +L+     L  
Sbjct: 12  HLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 257 LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
           L       L  L  L +  N+L++ P     + +L  LD  FN L  LP      L  L+
Sbjct: 70  LQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 316 VLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPL 372
            L L  N  +L  LP  +      L +L L+NN +  LP      LENL  L L +N L
Sbjct: 128 ELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 97.1 bits (242), Expect = 7e-23
 Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           +   +N     L  LP  +        L  S N L             L +L++   +L 
Sbjct: 11  SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 280 TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD-LIN 338
                   +  L  LD   N+L  LP     L  L VL++S  FN LT LP      L  
Sbjct: 69  KLQVDG-TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLTSLPLGALRGLGE 125

Query: 339 LRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL-VIPP 376
           L+EL L  N+++ LP         L KL+L  N L  +P 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 6e-14
 Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 30/144 (20%)

Query: 235 PESIARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293
           P        S +E++    NL  LP ++     +   L +  N L TF  +         
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLA--------- 49

Query: 294 LDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353
                         +   TRL  LNL     +LT+L    G L  L  LDLS+NQ+++LP
Sbjct: 50  -------------TLMPYTRLTQLNLDRA--ELTKLQ-VDGTLPVLGTLDLSHNQLQSLP 93

Query: 354 DTFFRLENLTKLNLDQNPL-VIPP 376
                L  LT L++  N L  +P 
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 156 DLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPD 213
           D++  +L  LP  A   L  L  L L  N L+ +P  +     KLE+L +++N L  LP 
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 214 SI-GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVC 256
            +   L NL  L +  N L T+P+       L       N  +C
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  115 bits (290), Expect = 3e-28
 Identities = 55/220 (25%), Positives = 79/220 (35%), Gaps = 17/220 (7%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             V  A         +  +L  L SL+   + +  M   I  L  L +L  +SN + +L 
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD 80

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +    NL  L    NKL  L   +   + L  L+   N L  L  +       L  L+
Sbjct: 81  --LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLN 133

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
              N L     S      L  LD H N+       +   T+L  L+ S  FN +TEL   
Sbjct: 134 CARNTLTEIDVSHN--TQLTELDCHLNKKITKL-DVTPQTQLTTLDCS--FNKITELD-- 186

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +     L  L+   N I  L     +   LT L+   N L
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  115 bits (289), Expect = 3e-28
 Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 20/220 (9%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             +      +  L     +   L  L    N L  +   +  L KL  L+  +N L  L 
Sbjct: 67  TKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD 122

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +     L  LN + N L  +   ++  + L ELD   N  +            L  L 
Sbjct: 123 --VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTP--QTQLTTLD 176

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
              NK+      + + + L  L+   N +  L   + +  +L  L+ SSN   LTE+   
Sbjct: 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN--KLTEID-- 228

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +  L  L   D S N +  L  +   L  LT L+  Q  L
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  113 bits (285), Expect = 1e-27
 Identities = 44/229 (19%), Positives = 79/229 (34%), Gaps = 19/229 (8%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
            T+D +  ++  L     + + L  LN   N +  +   +    +L  LD SSN L  + 
Sbjct: 173 TTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID 228

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             +  L  L   + S N L  L  S    S L  L     +L+ +          L    
Sbjct: 229 --VTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQTDLLEIDLT---HNTQLIYFQ 281

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
            +  +       +     L  LD     +  L   + +  +L  L L++   +LTEL   
Sbjct: 282 AEGCRKIKELD-VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNT--ELTELD-- 334

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
           +     L+ L   N  I+    +  ++  L      +   +  P E + 
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (274), Expect = 4e-26
 Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 23/230 (10%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             ++     +  L     +   L  L+ S N L  +   +  L +L   D S N L  L 
Sbjct: 194 NRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
            S   L  L  L+     L  +   +   + L+   A       +          L  L 
Sbjct: 250 VST--LSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLD 303

Query: 273 IKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET 332
            +   +      + +   L YL  +  EL  L   +   T+L+ L+  +    + +    
Sbjct: 304 CQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA--HIQDFSS- 356

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLT------KLNLDQNPLVIPP 376
           +G +  L     +  Q   +P       +LT       L+   NP+ I P
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (269), Expect = 2e-25
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
               V+        +    S   L  L  LD  ++ +  +   I  L  L  L  + N +
Sbjct: 20  FASEVAAAFEMQATD--TISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
            TL   +++ ++L  L    N L  L       L  L  L+   NKL     S  +   L
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKLTKLDVS--QNPLL 129

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
            YL+   N L  +   +   T+L  L+     N      + +     L  LD S N+I  
Sbjct: 130 TYLNCARNTLTEID--VSHNTQLTELDCHL--NKKITKLD-VTPQTQLTTLDCSFNKITE 184

Query: 352 LPDTFFRLENLTKLNLDQNPL 372
           L     + + L +LN D N +
Sbjct: 185 LD--VSQNKLLNRLNCDTNNI 203

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (275), Expect = 3e-27
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
              +      +         L G+ +L+     +  +   +  L  L  L++  N +  L
Sbjct: 21  AIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL 78

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
              +  L  +  L +SGN L  +  +IA   S+  LD +   +  +   +  GL NL+ L
Sbjct: 79  A-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT-PLA-GLSNLQVL 134

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            + LN++    P +  + +L+YL     ++  L   +  L++L  L    N   ++++  
Sbjct: 135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK--ISDISP 190

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNK 382
            +  L NL E+ L NNQI  +        NL  + L    +   P+   N 
Sbjct: 191 -LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  106 bits (267), Expect = 4e-26
 Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 11/233 (4%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           + T+      +  + E    L  L+ L L  N +  +   +  L K+ EL++S N L+++
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV 100

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             +I  L ++K L+++  ++  +   +A  S+L  L    N +  +   +  GL NL+ L
Sbjct: 101 -SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS-PLA-GLTNLQYL 156

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
           SI   ++    P +  +  L  L A  N++  +   +  L  L  ++L +N   ++++  
Sbjct: 157 SIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQ--ISDVSP 212

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVNKGV 384
            + +  NL  + L+N  I   P  +     +  +    +   I P  I + G 
Sbjct: 213 -LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  105 bits (263), Expect = 1e-25
 Identities = 38/203 (18%), Positives = 87/203 (42%), Gaps = 15/203 (7%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   + +   ++ +     + A L  +  L      + ++   +  L NL  L +  N++
Sbjct: 18  LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIG--YGLLNLERLSIKLNKLRTFPPSICEMR 289
             L   +   + + EL+ S N L     N+    GL +++ L +   ++    P +  + 
Sbjct: 76  TDLAP-LKNLTKITELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLS 129

Query: 290 SLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI 349
           +L+ L    N++  +   +  LT L+ L++ +    +++L   + +L  L  L   +N+I
Sbjct: 130 NLQVLYLDLNQITNIS-PLAGLTNLQYLSIGN--AQVSDL-TPLANLSKLTTLKADDNKI 185

Query: 350 RALPDTFFRLENLTKLNLDQNPL 372
             +      L NL +++L  N +
Sbjct: 186 SDISP-LASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQ 369
            L     +    +  ++T+   T  DL  +  L      +  +      L NL  L L  
Sbjct: 17  ALANAIKIAAGKS--NVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKD 72

Query: 370 NPL 372
           N +
Sbjct: 73  NQI 75

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  108 bits (272), Expect = 2e-26
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 13/228 (5%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSN-LLQS 210
                 + ++  +P      R  + L      L  +   + +G   LE++++S N +L+ 
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 211 LPDSI-GLLLNLKVLNVS-GNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLN 267
           +   +   L  L  + +   N L  +         +L  L  S   +  LP       L 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 268 LERLSIKLN-KLRTFPP-SICEMRS-LKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
              L I+ N  + T    S   +      L  + N +  +  +    T+L+ LNLS N N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN-N 188

Query: 325 DLTELPETI-GDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQN 370
           +L ELP  +         LD+S  +I +LP      L+ L   +    
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.0 bits (226), Expect = 2e-20
 Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVS-SNL 207
              +     +L+++ + AF     L  + +S+N +  +   D  + L KL E+ +  +N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 208 LQSLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNN-LVCLPTNIGYG 264
           L  +       L NL+ L +S   +  LP+         V LD   N  +  +  N   G
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 265 L-LNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSS 321
           L      L +  N ++    S     +  +   +  N L  LP       +   +L++S 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 322 NFNDLTELPETI-GDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
               +  LP     +L  LR        ++ LP T  +L  L + +L   
Sbjct: 212 T--RIHSLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.0 bits (213), Expect = 1e-18
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%)

Query: 161 QLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNL-LQSLPDSI-- 215
            L  +  EAF  L  L  L +S   ++ +PD       +   LD+  N+ + ++  +   
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 216 GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNN-LVCLPTNIGYGLLNLERLSIK 274
           GL     +L ++ N +  +  S    + L EL+ S NN L  LP ++ +G      L I 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 275 LNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
             ++ + P    E ++ L+        L  LP  + KL  L   +L+   +
Sbjct: 211 RTRIHSLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLTYPSH 258

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  106 bits (267), Expect = 2e-26
 Identities = 75/205 (36%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 174 GLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKL 231
              S++ S   L A+P +I A  +KL   D+ SN L SLP      L  L++L ++ NKL
Sbjct: 17  NKNSVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 232 NTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MR 289
            TLP  I     +L  L  + N L  LP  +   L+NL  L +  N+L++ PP + + + 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133

Query: 290 SLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNN 347
            L YL   +NEL  LP     KLT L+ L L +N   L  +PE   D L  L+ L L NN
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDNN 191

Query: 348 QIRALPD-TFFRLENLTKLNLDQNP 371
           Q++ +P+  F  LE L  L L +NP
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           N   ++ S  KL  +P +I   +   +LD   N L  LP+   + L  L  L +  NKL+
Sbjct: 17  NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 280 TFPPSIC-EMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-L 336
           T P  I  E+++L+ L    N+L  LP  +  +L  L  L L  N   L  LP  + D L
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDSL 132

Query: 337 INLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
             L  L L  N++++LP   F +L +L +L L  N L
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  105 bits (265), Expect = 4e-26
 Identities = 63/223 (28%), Positives = 116/223 (52%), Gaps = 11/223 (4%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           ET+ ++    ++ P+        +  NL +  +         L  ++++  +++ ++S+ 
Sbjct: 1   ETITVSTPIKQIFPD--DAFAETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQ 57

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             I  L N++ L + GNKL+ +  ++   ++L  L  + N L  LP  +   L NL+ L 
Sbjct: 58  -GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115

Query: 273 IKLNKLRTFPPSIC-EMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELP 330
           +  N+L++ P  +  ++ +L YL+   N+L  LP+ +  KLT L  L+LS   N L  LP
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY--NQLQSLP 173

Query: 331 ETIGD-LINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNP 371
           E + D L  L++L L  NQ++++PD  F RL +L  + L  NP
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  104 bits (261), Expect = 1e-25
 Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 15/215 (6%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   V  NL +  +  +  S   L  ++  +  ++ +QSL   +    NLK L++S N++
Sbjct: 18  LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQI 75

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
           + L   +   + L EL  + N L  L    G     L RL +  N+LR     +  +++L
Sbjct: 76  SDL-SPLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDS-LIHLKNL 130

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
           + L    N+L  +   +G L++LEVL+L  N  ++T     +  L  +  +DL+  +   
Sbjct: 131 EILSIRNNKLKSIV-MLGFLSKLEVLDLHGN--EITNT-GGLTRLKKVNWIDLTGQKCVN 186

Query: 352 LPDTFFRLENLTKLNLDQNP--LVIPPMEIVNKGV 384
            P        L   N  ++P    I P  I N G 
Sbjct: 187 EPVK--YQPELYITNTVKDPDGRWISPYYISNGGS 219

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 94.7 bits (236), Expect = 3e-22
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 11/187 (5%)

Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
             GL    + ++    +  L  S   L  ++  N   + + +L   +   ++L EL  S 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSH 72

Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
           N +  L + +   L  LE LS+  N+L+           L  L    NEL     ++  L
Sbjct: 73  NQISDL-SPLK-DLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTD-SLIHL 127

Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
             LE+L++ +  N L  +   +G L  L  LDL  N+I        RL+ +  ++L    
Sbjct: 128 KNLEILSIRN--NKLKSI-VMLGFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQK 183

Query: 372 LVIPPME 378
            V  P++
Sbjct: 184 CVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 36/219 (16%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQ--KLEELDVSSNLLQS 210
           + + L+  Q+  L      L  L  L+++RN L+    ++ G+    L  L + +N L+ 
Sbjct: 66  KELHLSHNQISDL-SPLKDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDNNELRD 120

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER 270
             DS+  L NL++L++  NKL ++   +   S L  LD   N +    TN          
Sbjct: 121 T-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEI----TNT--------- 165

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
                         +  ++ + ++D    +    P  +     L + N   + +     P
Sbjct: 166 ------------GGLTRLKKVNWIDLTGQKCVNEP--VKYQPELYITNTVKDPDGRWISP 211

Query: 331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQ 369
             I +  +  +  +         +  ++      +   +
Sbjct: 212 YYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETE 250

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (270), Expect = 2e-25
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 28/206 (13%)

Query: 195 LQKLEELDVSSNLLQSLPDSIGLLL-NLKVLNVSGNKLNTLPE-SIARCSSLVELDASFN 252
           L+ L    V S++       I  +  N+ + N + +    +     ++ S  + LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC---EMRSLKYLDAHFNEL--HGLPRA 307
            L          L  LE L +++N+L+          +M+SL+ LD   N +        
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 308 IGKLTRLEVLNLSSN--------------------FNDLTELPETIGDLINLRELDLSNN 347
                 L  LN+SSN                     N +  +P+ +  L  L+EL++++N
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454

Query: 348 QIRALPD-TFFRLENLTKLNLDQNPL 372
           Q++++PD  F RL +L K+ L  NP 
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 2e-17
 Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 9/159 (5%)

Query: 223 VLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP 282
           +++ S N L  +P+ ++       L+ S N +  L T+    L  L  L I  N+++   
Sbjct: 4   LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 283 PSICE-MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET--IGDLINL 339
            S+ +  + L+YLD   N+L  +         L+ L+LS  FN    LP     G++  L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLS--FNAFDALPICKEFGNMSQL 117

Query: 340 RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME 378
           + L LS   +           N++K+ L          +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 16/240 (6%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLP 212
            VD +   L  +P+     +    LN+S+N +  +  S I  L KL  L +S N +Q L 
Sbjct: 4   LVDRSKNGLIHVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 213 DSI-GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYG-LLNLER 270
            S+      L+ L++S NKL  +        +L  LD SFN    LP    +G +  L+ 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
           L +    L           ++  +     E +G       L      +L   F    E  
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 331 ETIG---------DLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
             +          +L N++ +   N     L        N    NL  N +       + 
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 37/256 (14%), Positives = 79/256 (30%), Gaps = 32/256 (12%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA------MPDSIAGLQKLEELDVS--- 204
            V L   +     E    L+   + +L             +  S+  +  LE  ++    
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 205 ---------SNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLV 255
                    S L +   +     L L  +  + N    + + +   +++     S   L 
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQ 260

Query: 256 CLPT-----NIGYGLLNLERLSIKLNKLRTFPPSIC-EMRSLKYLDAHFNELHGLPR-AI 308
                      G  L  L    +  +        I     ++   +   +    +     
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 309 GKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELDLSNNQIRALPDT---FFRLENLTK 364
            K++    L+ S+N   LT+      G L  L  L L  NQ++ L        ++++L +
Sbjct: 321 SKISPFLHLDFSNN--LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 365 LNLDQNPLVIPPMEIV 380
           L++ QN +     +  
Sbjct: 379 LDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 153 ETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS 210
           + +D++   +            + L+SLN+S N+L           +++ LD+ SN ++S
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKS 435

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGY 263
           +P  +  L  L+ LNV+ N+L ++P+ I  R +SL ++    N   C    I Y
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 153 ETVDLADRQLKLLPE---AFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNL 207
           ET+ L   QLK L +      +++ L  L++S+N +         +  + L  L++SSN+
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 208 LQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLN 267
           L        L   +KVL++  NK+ ++P+ + +  +L EL+ + N L  +P  I   L +
Sbjct: 411 LTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 268 LERLSIKLN 276
           L+++ +  N
Sbjct: 470 LQKIWLHTN 478

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  104 bits (262), Expect = 2e-25
 Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 21/221 (9%)

Query: 171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIG-----LLLNLKVLN 225
            L+ L   NL        P   A    L  L++ +    +    +      L   LKVL+
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVC----LPTNIGYGLLNLERLSIKLNKLRT 280
           ++         E +    +L  LD S N  +     +          L+ L+++   + T
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 281 FPPSICE----MRSLKYLDAHFNELHGLPRAIG--KLTRLEVLNLSSNFNDLTELPETIG 334
                         L+ LD   N L     A      ++L  LNLS     L ++P+ + 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF--TGLKQVPKGLP 273

Query: 335 DLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375
               L  LDLS N++   P     L  +  L+L  NP +  
Sbjct: 274 A--KLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 42/216 (19%), Positives = 65/216 (30%), Gaps = 35/216 (16%)

Query: 176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP 235
           +   +    L  +   I+GLQ+L   ++        P       +L +LN+      T  
Sbjct: 80  IPSRILFGALRVL--GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYL 294
             +A     +                      L+ LSI       F    +    +L  L
Sbjct: 138 AWLAELQQWL-------------------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 295 DAHFNELHGLPRAI-----GKLTRLEVLNLSSNFNDLTELPETIGDLI----NLRELDLS 345
           D   N   G    I      K   L+VL L +    +         L      L+ LDLS
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNA--GMETPSGVCSALAAARVQLQGLDLS 236

Query: 346 NNQIRALPD--TFFRLENLTKLNLDQNPLVIPPMEI 379
           +N +R      +      L  LNL    L   P  +
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 1e-13
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 170 GRLRGLVSLNLSRNLLEAMPD----SIAGLQKLEELDVSSNLLQSLPDSIGLLL--NLKV 223
            +   L  L L    +E          A   +L+ LD+S N L+    +        L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 224 LNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
           LN+S   L  +P+ +   + L  LD S+N L   P+     L  +  LS+K N  
Sbjct: 258 LNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 36/208 (17%), Positives = 57/208 (27%), Gaps = 21/208 (10%)

Query: 193 AGLQKLEELDVSSNLLQSLPDSIGLL--LNLKVLNVSGNKLN----TLPESIARCSSLVE 246
            G + LE L    +    L     ++  L+LK L V   ++          +   S L E
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 247 LDASFNNL--VCLPTNIGYGLLNLERLSIKLNKLRTFPPSI-----CEMRSLKYLDAHFN 299
           L      +     P  +     +L  L+++     T    +          LK L     
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 300 ELHGLP-RAIGKLTRLEVLNLSSN-FNDLTELPETI--GDLINLRELDLSNNQIRALPDT 355
                    +     L  L+LS N       L   +       L+ L L N  +      
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 356 ----FFRLENLTKLNLDQNPLVIPPMEI 379
                     L  L+L  N L       
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAP 247

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (262), Expect = 1e-24
 Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 60/278 (21%)

Query: 153 ETVDLADRQLKLLP--EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQK--LEELDVSSNL 207
           E + L D  +K +     F  +R    L+L+ N ++++ +      Q      L +SS  
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 208 LQSLPDSIGL---------LLNLKVLNVSGNKLNTLPESIARC----------------- 241
           LQ + +               ++  L++SGN                             
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 242 -----------------------SSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
                                  S +   D S + +  L  ++     +LE+L++  N++
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 279 RTFPPSICE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD- 335
                +    +  L  L+   N L  +   +   L +LEVL+LS N   +  L +     
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN--HIRALGDQSFLG 369

Query: 336 LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
           L NL+EL L  NQ++++PD  F RL +L K+ L  NP 
Sbjct: 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 37/219 (16%)

Query: 163 KLLPEAFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLL 219
           +L   +F RL+ L  L + +         ++  GL  L  L +  N    L       L 
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           NL+VL ++   L+                        L  N    L +LE L ++ N ++
Sbjct: 104 NLEVLTLTQCNLDG---------------------AVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 280 TFPPSI--CEMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD- 335
              P+     MR    LD  FN++  +               L  +   L ++ E     
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 336 --------LINLRELDLSNNQIRALP-DTFFRLENLTKL 365
                     ++  LDLS N  +      FF     TK+
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 242 SSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC--EMRSLKYLDAHFN 299
           + +  +D S N++  L       L +L+ L ++         +     + SL  L   +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 300 ELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELDLSNNQIRAL-PDTF 356
           +   L   A   L  LEVL L+    D   L       L +L  L L +N I+ + P +F
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 357 F-RLENLTKLNLDQNPL 372
           F  +     L+L  N +
Sbjct: 150 FLNMRRFHVLDLTFNKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 7/154 (4%)

Query: 156 DLADRQLKLLPE-AFGRLR--GLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL 211
                  K      F  L   G+ + +LS++ + A+  S+ +    LE+L ++ N +  +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 212 PDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
            D+    L +L  LN+S N L ++   +      L  LD S+N++  L      GL NL+
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 270 RLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELH 302
            L++  N+L++ P  I   + SL+ +  H N   
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 4e-24
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 34/234 (14%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAG------LQKLEELDVSSNLLQSLPDSIG-LLLNLKVL 224
            R +  LN+    +    D          L+ L    V + +     +++  +   + + 
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 225 NVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP 283
            +S +    +        SS   L+ + N            L  L+ L ++ N L+ F  
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 284 SICEMRSLKYLDAHFNELHGLPRAI-----GKLTRLEVLNLSSN---------------- 322
                +++  L+     L+ L              + VLNLSSN                
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454

Query: 323 ----FNDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNP 371
                N +  +P+ +  L  L+EL++++NQ++++PD  F RL +L  + L  NP
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 46/239 (19%), Positives = 88/239 (36%), Gaps = 22/239 (9%)

Query: 152 VETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
            + + L+   + +L       L  L  L LS N + ++   +    Q LE LDVS N LQ
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPES--IARCSSLVELDASFNNLVCLP------TNI 261
           ++      + +L+ L++S N  + LP        + L  L  S      L        ++
Sbjct: 114 NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
              LL+L    IK  +  +       +  L     +      +  ++  L  L++ N+  
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 322 NFNDLTELPETIGDL--------INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           N  +   L   + +L        + L+ ++ +      L   FF    +  LN+    +
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF-QFFWPRPVEYLNIYNLTI 288

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 6e-15
 Identities = 42/180 (23%), Positives = 65/180 (36%), Gaps = 32/180 (17%)

Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT 259
            +D S+  L  +P    L    K L++S N ++ L                 + L     
Sbjct: 35  MVDYSNRNLTHVPK--DLPPRTKALSLSQNSISELRMP------------DISFLS---- 76

Query: 260 NIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFNELHGLPRAIGKLTRLEVLN 318
                   L  L +  N++R+    +    + L+YLD   N L  +      +  L  L+
Sbjct: 77  -------ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLD 127

Query: 319 LSSNFNDLTELPET--IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
           LS  FND   LP     G+L  L  L LS  + R L        +L+ + LD     I  
Sbjct: 128 LS--FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.7 bits (186), Expect = 9e-15
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 240 RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHF 298
                  +D S  NL  +P ++       + LS+  N +          +  L+ L    
Sbjct: 29  SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSH 85

Query: 299 NELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT-- 355
           N +  L   +      LE L++S   N L  +      + +LR LDLS N    LP    
Sbjct: 86  NRIRSLDFHVFLFNQDLEYLDVSH--NRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKE 141

Query: 356 FFRLENLTKLNLDQNPL 372
           F  L  LT L L     
Sbjct: 142 FGNLTKLTFLGLSAAKF 158

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 36/267 (13%), Positives = 74/267 (27%), Gaps = 47/267 (17%)

Query: 156 DLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDS 214
            L+  +++ L    F   + L  L++S N L+ +      +  L  LD+S N    LP  
Sbjct: 82  RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVC 139

Query: 215 --IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGY-GLLNLERL 271
              G L  L  L +S  K   L         L  +     +            + N   L
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 272 SIKLNKLRTFPPSIC---------EMRSLKYLDAHFNELHGLPRAI---GKLTRLEVLNL 319
            +  +    F   +          ++ ++K  D +   L      +     L  + + ++
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 320 SSNFNDLTELPETIGD----------------------------LINLRELDLSNNQIRA 351
            + +    +L +                                L +L    + N     
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 352 LPDTFFR-LENLTKLNLDQNPLVIPPM 377
             +  +     +    L  +      M
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHM 346

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 153 ETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
             ++         + +    L+ L +L L RN L+         + +  L+     L SL
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 212 PDSI-----GLLLNLKVLNVSGNKLNTLPESIARC--SSLVELDASFNNLVCLPTNIGYG 264
                        ++ VLN+S N    L  S+ RC    +  LD   N ++ +P ++   
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-TH 471

Query: 265 LLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFN 299
           L  L+ L++  N+L++ P  + + + SL+Y+  H N
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 156 DLADRQLKLLP-----EAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQ 209
           +  D  L  L              ++ LNLS N+L       +    K++ LD+ +N + 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVC 256
           S+P  +  L  L+ LNV+ N+L ++P+ +  R +SL  +    N   C
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  104 bits (259), Expect = 5e-24
 Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 10/181 (5%)

Query: 192 IAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF 251
                +  + ++    +     +   L ++  +  + + + ++ + I    ++ +L  + 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG 74

Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL 311
           N L  +   +   L NL  L +  NK++     + +++ LK L    N +  +   +  L
Sbjct: 75  NKLTDI-KPLT-NLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHL 130

Query: 312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP 371
            +LE L L +N   +T++   +  L  L  L L +NQI  +      L  L  L L +N 
Sbjct: 131 PQLESLYLGNN--KITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186

Query: 372 L 372
           +
Sbjct: 187 I 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  103 bits (257), Expect = 1e-23
 Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 13/219 (5%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
               +L  + +         L  +  +  + + ++++   I  L  + +L ++ N L  +
Sbjct: 23  TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 80

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
              +  L NL  L +  NK+  L  S+     L  L    N +  +   +   L  LE L
Sbjct: 81  KP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLV-HLPQLESL 136

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +  NK+      +  +  L  L    N++  +   +  LT+L+ L LS N   +++L  
Sbjct: 137 YLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN--HISDLRA 192

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
            +  L NL  L+L + +   L        NL   N  +N
Sbjct: 193 -LAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVKN 228

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  102 bits (256), Expect = 1e-23
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 23/233 (9%)

Query: 157 LADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIG 216
           L   + +           L    LS      +   +   ++L+EL+         P++  
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE---------PENKW 383

Query: 217 LLLNLKVLNVSGNKLNTLPESIARCSSLVELD--------ASFNNLVCLPTNIGYGLLNL 268
            LL + +L  + + L    E++   S+L  +D           +  +   + +     ++
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTE 328
             L +    L T    + ++  + +LD   N L  LP A+  L  LEVL  S N   L  
Sbjct: 444 RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--LEN 500

Query: 329 LPETIGDLINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPLVIPPMEI 379
           +   + +L  L+EL L NN+++             L  LNL  N L       
Sbjct: 501 VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 85.6 bits (211), Expect = 5e-18
 Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 8/189 (4%)

Query: 186 EAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLV 245
                   G    +E  +  +  +           L    +S  K   L   +  C  L 
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ 375

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHG 303
           EL+    N  CL T I   +  L+ L  +   L+ F    ++  MR+    D     L  
Sbjct: 376 ELE--PENKWCLLTIILL-MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLT 363
                 +   + VL+L+    DLT L   +  L+ +  LDLS+N++RALP     L  L 
Sbjct: 433 NSVLKMEYADVRVLHLAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLE 489

Query: 364 KLNLDQNPL 372
            L    N L
Sbjct: 490 VLQASDNAL 498

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.9 bits (191), Expect = 2e-15
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           V  + LA + L +L     +L  +  L+LS N L A+P ++A L+ LE L  S N L+++
Sbjct: 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPE--SIARCSSLVELDASFNNLVCLP 258
              +  L  L+ L +  N+L        +  C  LV L+   N+L    
Sbjct: 502 DG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 4e-15
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
           L+L+   L  +   +  L  +  LD+S N L++LP ++  L  L+VL  S N L  +   
Sbjct: 446 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG- 503

Query: 238 IARCSSLVELDASFNNLVCLPTNIGYGLL-NLERLSIKLNKLRTFPPSICEMR----SLK 292
           +A    L EL    N L              L  L+++ N L         +     S+ 
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563

Query: 293 YLD 295
            + 
Sbjct: 564 SIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 14/165 (8%)

Query: 161 QLKLLPEAFGRLRGLVSLNLSRNL---------LEAMPDSIAGLQKLEELDVSSNLLQSL 211
            L    E       L +++  R           L            +  L ++   L  L
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
              +  LL +  L++S N+L  LP ++A    L  L AS N L  +   +   L  L+ L
Sbjct: 457 C-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVA-NLPRLQEL 513

Query: 272 SIKLNKLRTFP--PSICEMRSLKYLDAHFNELHGLPRAIGKLTRL 314
            +  N+L+       +     L  L+   N L        +L  +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 1e-22
 Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 15/234 (6%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
               +L  + +         L  +  +  + + ++++   I  L  + +L ++ N L  +
Sbjct: 26  TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 83

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
              +  L NL  L +  NK+  L  S+     L  L    N +  +   +   L  LE L
Sbjct: 84  KP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLV-HLPQLESL 139

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE 331
            +  NK+      +  +  L  L    N++  +   +  LT+L+ L LS   N +++L  
Sbjct: 140 YLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLS--KNHISDLRA 195

Query: 332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP--LVIPPMEIVNKG 383
            +  L NL  L+L + +    P       NL   N  +N    ++ P  I + G
Sbjct: 196 -LAGLKNLDVLELFSQECLNKPIN--HQSNLVVPNTVKNTDGSLVTPEIISDDG 246

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 29/217 (13%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           ++ +   +  +K + +    L  +  L L+ N L  +   +A L+ L  L +  N ++ L
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL 105

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERL 271
             S+  L  LK L++  N ++ +   +     L  L    N +  + T +   L  L+ L
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLS-RLTKLDTL 161

Query: 272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN--------- 322
           S++ N++    P +  +  L+ L    N +  L RA+  L  L+VL L S          
Sbjct: 162 SLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINH 219

Query: 323 FNDLTEL------------PETIGDLINLRELDLSNN 347
            ++L               PE I D  +  + ++  +
Sbjct: 220 QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 218 LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNK 277
                  N+    +     +    +S+ ++ A+ +++  +   I Y L N+ +L +  NK
Sbjct: 23  FAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQY-LPNVTKLFLNGNK 79

Query: 278 LRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLI 337
           L    P +  +++L +L    N++  L  ++  L +L+ L+L    N ++++   +  L 
Sbjct: 80  LTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH--NGISDI-NGLVHLP 134

Query: 338 NLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
            L  L L NN+I  +     RL  L  L+L+ N +
Sbjct: 135 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNN-LV 255
            E+  V+   +Q +P    L  + + L +    L T+P  + +   ++  +  S +  L 
Sbjct: 13  EEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 256 CLPTNIGYGLLNLERLSIKLNK-LRTFPPSICE-MRSLKYLDAHFNELHGLP--RAIGKL 311
            L ++  Y L  +  + I+  + L    P   + +  LK+L      L   P    +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 312 TRLEVLNLSSNFNDLTELPE-TIGDLIN-LRELDLSNNQIRALPDTFFRLENLTKLNLDQ 369
               +L ++ N   +T +P      L N    L L NN   ++    F    L  + L++
Sbjct: 130 DIFFILEITDN-PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188

Query: 370 NPL--VIPP 376
           N    VI  
Sbjct: 189 NKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 34/227 (14%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNL-LEAMPDSI-AGLQKLEELDVSSN-L 207
            +T+ L +  L+ +P  AF  L  +  + +S ++ L+ +       L K+  +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 208 LQSLPDSI-GLLLNLKVLNVSGNKLNTLPE--SIARCSSLVELDASFNN-LVCLPTNIGY 263
           L  +       L  LK L +    L   P+   +        L+ + N  +  +P N   
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
           GL N                          L  + N    +       T+L+ + L+ N 
Sbjct: 153 GLCNE----------------------TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN- 189

Query: 324 NDLTELPETI--GDLINLRELDLSNNQIRALPDTFFR-LENLTKLNL 367
             LT + +    G       LD+S   + ALP      L+ L   N 
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 37/236 (15%), Positives = 73/236 (30%), Gaps = 39/236 (16%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNL-LQS 210
           E   +  + ++ +P          +L L    L  +P  + + L  +  + VS ++ LQ 
Sbjct: 14  EDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 211 LPDSI-GLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE 269
           L       L  +  + +                          NL  +  +    L  L+
Sbjct: 71  LESHSFYNLSKVTHIEIRNT----------------------RNLTYIDPDALKELPLLK 108

Query: 270 RLSIKLNKLRTFPP--SICEMRSLKYLD-AHFNELHGLP-RAIGKLTR-LEVLNLSSNFN 324
            L I    L+ FP    +        L+      +  +P  A   L      L L +N  
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-- 166

Query: 325 DLTELPETIGDLINLRELDLS-NNQIRALPDTFFR--LENLTKLNLDQNPLV-IPP 376
             T +     +   L  + L+ N  +  +    F       + L++ Q  +  +P 
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTN-IGYGLLNLERLSIKLNKLRTFPPSI 285
           S  KLN +PE I       EL  + N    L    I   L  L +++   NK+       
Sbjct: 19  SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 286 CE-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLREL 342
            E    +  +    N L  +   +   L  L+ L L SN   +T +       L ++R L
Sbjct: 77  FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--RITCVGNDSFIGLSSVRLL 134

Query: 343 DLSNNQIRALPD-TFFRLENLTKLNLDQNPL 372
            L +NQI  +    F  L +L+ LNL  NP 
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC--EMRSLKYLD 295
            +C      +D S   L  +P +I         L +  N+      +    ++  L+ ++
Sbjct: 7   EKCRCEGTTVDCSNQKLNKIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63

Query: 296 AHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALP 353
              N++  +   A    + +  + L+SN   L  +   +   L +L+ L L +N+I  + 
Sbjct: 64  FSNNKITDIEEGAFEGASGVNEILLTSN--RLENVQHKMFKGLESLKTLMLRSNRITCVG 121

Query: 354 -DTFFRLENLTKLNLDQNPL 372
            D+F  L ++  L+L  N +
Sbjct: 122 NDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 178 LNLSRNLLEAMP--DSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTL 234
           L L+ N    +        L +L +++ S+N +  + +        +  + ++ N+L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 235 PESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLK 292
              +     SL  L    N + C+  +   GL ++  LS+  N++ T  P   + + SL 
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156

Query: 293 YLDAHFN 299
            L+   N
Sbjct: 157 TLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 277 KLRTFPPSICEMRSLKYLDAHFNELHGLPR--AIGKLTRLEVLNLSSNFNDLTELPETIG 334
           KL   P  I +      L  + NE   L       KL +L  +N S+N   +T++ E   
Sbjct: 22  KLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--KITDIEEGAF 77

Query: 335 D-LINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV-IPP 376
           +    + E+ L++N++  +    F  LE+L  L L  N +  +  
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 88.6 bits (220), Expect = 2e-20
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC 286
            G  L  +P ++    ++ E+    N +  +P         L R+ +  N++    P   
Sbjct: 19  RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 287 E-MRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELD 343
           + +RSL  L  + N++  LP+++   L  L++L L  N N +  L       L NL  L 
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL--NANKINCLRVDAFQDLHNLNLLS 134

Query: 344 LSNNQIRALPD-TFFRLENLTKLNLDQNPL 372
           L +N+++ +   TF  L  +  ++L QNP 
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.5 bits (186), Expect = 8e-16
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDA 296
           A C+ S   +D     L  +PTN+      +  + ++ N ++  PP      + L+ +D 
Sbjct: 7   AACTCSNNIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDL 63

Query: 297 HFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALP- 353
             N++  L       L  L  L L  N   +TELP+++ + L +L+ L L+ N+I  L  
Sbjct: 64  SNNQISELAPDAFQGLRSLNSLVLYGN--KITELPKSLFEGLFSLQLLLLNANKINCLRV 121

Query: 354 DTFFRLENLTKLNLDQNPL 372
           D F  L NL  L+L  N L
Sbjct: 122 DAFQDLHNLNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 178 LNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLP 235
           + L +N ++ +P    +  +KL  +D+S+N +  L       L +L  L + GNK+  LP
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 236 ESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKY 293
           +S+     SL  L  + N + CL  +    L NL  LS+  NKL+T        +R+++ 
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 294 LDAHFN 299
           +    N
Sbjct: 157 MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 152 VETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQ 209
           +  + L    +K++P  AF   + L  ++LS N +  +      GL+ L  L +  N + 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 210 SLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLN 267
            LP S+   L +L++L ++ NK+N L         +L  L    N L  +       L  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 268 LERLSIKLN 276
           ++ + +  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 276 NKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIG 334
             L   P ++ E  ++  +    N +  +P  A     +L  ++LS+N   ++EL     
Sbjct: 21  KGLTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN--QISELAPDAF 76

Query: 335 D-LINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLV-IPP 376
             L +L  L L  N+I  LP   F  L +L  L L+ N +  +  
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 54/206 (26%), Positives = 77/206 (37%), Gaps = 36/206 (17%)

Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGL--LLNLKVLNVSGNKLNTL 234
            L+ S+  L  +P S+        LD+S N L  L        L NL  L +S N LN +
Sbjct: 22  ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79

Query: 235 PESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKY 293
                    +L  LD S N+L  L   +   L  LE L +  N +     +         
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-------- 131

Query: 294 LDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE----TIGDLINLRELDLSNNQI 349
               F            + +L+ L LS   N ++  P         L  L  LDLS+N++
Sbjct: 132 ----FE----------DMAQLQKLYLSQ--NQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

Query: 350 RALP-DTFFRLENLTK--LNLDQNPL 372
           + LP     +L    K  L L  NPL
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 19/219 (8%)

Query: 152 VETVDLADRQLKLLP--EAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLL 208
              +DL+   L  L       RL  L SL LS N L  +       +  L  LD+SSN L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 209 QSLPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNI---GY 263
            +L + +   L  L+VL +  N +  +  +     + L +L  S N +   P  +   G 
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-----RAIGKLTRLEVLN 318
            L  L  L +  NKL+  P +   ++ L     +   LH  P     +     +  +   
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTD--LQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQ 218

Query: 319 LSSNFNDLTEL----PETIGDLINLRELDLSNNQIRALP 353
           LSS  +   +L     + + ++ +L   + S  +  A  
Sbjct: 219 LSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWE 257

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 276 NKLRTFPPSICEMRSLKYLDAHFNELHGLPR--AIGKLTRLEVLNLSSNFNDLTELPE-T 332
            +L   P S+        LD   N L  L       +LT L  L LS N   L  +    
Sbjct: 28  QQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN--HLNFISSEA 83

Query: 333 IGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL-VIPP 376
              + NLR LDLS+N +  L    F  L+ L  L L  N + V+  
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 87.8 bits (218), Expect = 7e-20
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCL 257
           +E+D     L S+P   G+  + + L++    L TL ++     + L  L+  +N L  L
Sbjct: 17  KEVDCQGKSLDSVP--SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74

Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
              +   L  L  L +  N+L + P  +   +  L  L    N+L  LP  +  +LT+L+
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134

Query: 316 VLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNP 371
            L L++N   L  +P    D L NL+ L LS NQ++++P   F RL  L  + L  N 
Sbjct: 135 ELRLNTN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 85.1 bits (211), Expect = 6e-19
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
             K ++  G  L+++P  I       +LD     L  L      GL  L  L++  N+L+
Sbjct: 15  GKKEVDCQGKSLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ 72

Query: 280 TFPPSI-CEMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-L 336
           T    +  ++  L  L    N+L  LP  +   LT+L+ L L  N   L  LP  + D L
Sbjct: 73  TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRL 130

Query: 337 INLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIPP 376
             L+EL L+ NQ++++P   F +L NL  L+L  N L   P
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 241 CS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHF 298
           C+    E+D    +L  +P+ I     + E+L ++   L T   +    +  L +L+  +
Sbjct: 12  CNEGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY 68

Query: 299 NELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTF 356
           N+L  L   +   LT L  L L++N   L  LP  + D L  L +L L  NQ+++LP   
Sbjct: 69  NQLQTLSAGVFDDLTELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126

Query: 357 F-RLENLTKLNLDQNPL 372
           F RL  L +L L+ N L
Sbjct: 127 FDRLTKLKELRLNTNQL 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 5/152 (3%)

Query: 153 ETVDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           E +DL    L  L    F  L  L  LNL  N L+ +   +   L +L  L +++N L S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 211 LPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLLNL 268
           LP  +   L  L  L + GN+L +LP  +  R + L EL  + N L  +P      L NL
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 269 ERLSIKLNKLRTFPPSICE-MRSLKYLDAHFN 299
           + LS+  N+L++ P    + +  L+ +    N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 154 TVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSL 211
            ++L   QL+ L    F  L  L +L L+ N L ++P  +   L +L++L +  N L+SL
Sbjct: 63  WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122

Query: 212 P----DSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPTNIGYGLL 266
           P    D    L  LK L ++ N+L ++P     + ++L  L  S N L  +P      L 
Sbjct: 123 PSGVFDR---LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 267 NLERLSIKLNKLRTFPPSICEMRSLKYL 294
            L+ +++  N         C    + YL
Sbjct: 180 KLQTITLFGN------QFDCSRCEILYL 201

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 14/184 (7%)

Query: 193 AGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN 252
           +  +      +  +   ++  +   + +L  + ++   +  L   I    ++ +L  +  
Sbjct: 20  STFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNI 76

Query: 253 NLVCLPTNIGY--GLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGL-PRAI 308
           +     TN     GL NLERL I    + +   P++  + SL  LD   +         I
Sbjct: 77  HA----TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 309 GKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLD 368
             L ++  ++LS N   +T++   +  L  L+ L++  + +            L +L   
Sbjct: 133 NTLPKVNSIDLSYN-GAITDI-MPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAF 189

Query: 369 QNPL 372
              +
Sbjct: 190 SQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 6/114 (5%)

Query: 267 NLERL-SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND 325
             +   +  L +  T   +  +M SL Y+      +  L   I     ++ L ++     
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTIN--NIH 77

Query: 326 LTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIPPME 378
            T     I  L NL  L +    +          L +LT L++  +      + 
Sbjct: 78  ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
           + +L  +++    +      I    ++K L  +          I  L+ LE L +    +
Sbjct: 43  MNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGK-D 99

Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFR-LENLTKLNLDQNPLV 373
             ++    +  L +L  LD+S++       T    L  +  ++L  N  +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 166 PEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVL 224
                 L  L  L++S +  + ++   I  L K+  +D+S N   +    +  L  LK L
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164

Query: 225 NVSGNKLNTLPESIARCSSLVELDASFNNL 254
           N+  + ++     I     L +L A    +
Sbjct: 165 NIQFDGVHDY-RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 153 ETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
             +D++       +      L  + S++LS N        +  L +L+ L++  + +   
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174

Query: 212 PDSIGLLLNLKVLNVSGNKLN 232
              I     L  L      + 
Sbjct: 175 -RGIEDFPKLNQLYAFSQTIG 194

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 81.3 bits (201), Expect = 6e-18
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 225 NVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284
                   ++P  I   +    LD   N+L  LP  +   L +L +L +  NKL++ P  
Sbjct: 13  ECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 285 IC-EMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRE 341
           +  ++ SL YL+   N+L  LP  +  KLT+L+ L L++N   L  LP+ + D L  L++
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN--QLQSLPDGVFDKLTQLKD 128

Query: 342 LDLSNNQIRALPD-TFFRLENLTKLNLDQNP 371
           L L  NQ++++PD  F RL +L  + L  NP
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 10/139 (7%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDA 296
           +RCS S   ++        +PT I         L ++ N L++ P  + + + SL  L  
Sbjct: 3   SRCSCSGTTVECYSQGRTSVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYL 59

Query: 297 HFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD 354
             N+L  LP  +  KLT L  LNLS+N   L  LP  + D L  L+EL L+ NQ+++LPD
Sbjct: 60  GGNKLQSLPNGVFNKLTSLTYLNLSTN--QLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117

Query: 355 TFF-RLENLTKLNLDQNPL 372
             F +L  L  L L QN L
Sbjct: 118 GVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 13/89 (14%)

Query: 156 DLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP----DSIAGLQKLEELDVSSNLLQS 210
            L   +L+ LP   F +L  L  LNLS N L+++P    D    L +L+EL +++N LQS
Sbjct: 58  YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---LTQLKELALNTNQLQS 114

Query: 211 LPDSIGL---LLNLKVLNVSGNKLNTLPE 236
           LPD  G+   L  LK L +  N+L ++P+
Sbjct: 115 LPD--GVFDKLTQLKDLRLYQNQLKSVPD 141

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 225 NVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS 284
           +    +  ++P  I   ++   L    N +  L   +   L+NL+ L +  N+L   P  
Sbjct: 25  DCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 285 IC-EMRSLKYLDAHFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGDLINLREL 342
           +   +  L  LD   N+L  LP A+  +L  L+ L +  N   LTELP  I  L +L  L
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHL 140

Query: 343 DLSNNQIRALPD-TFFRLENLTKLNLDQNP 371
            L  NQ++++P   F RL +LT   L  NP
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDA 296
           ++CS S   +D        +P  I     N + L +  N++    P + + + +LK L  
Sbjct: 15  SQCSCSGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYL 71

Query: 297 HFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD 354
             N+L  LP  +   LT+L VL+L +N   LT LP  + D L++L+EL +  N++  LP 
Sbjct: 72  GSNQLGALPVGVFDSLTQLTVLDLGTN--QLTVLPSAVFDRLVHLKELFMCCNKLTELPR 129

Query: 355 TFFRLENLTKLNLDQNPLVIPP 376
              RL +LT L LDQN L   P
Sbjct: 130 GIERLTHLTHLALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 141 KILQEAESGVVVET--VDLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQ 196
           K      +G+      + L D Q+ KL P  F  L  L  L L  N L A+P  +   L 
Sbjct: 29  KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88

Query: 197 KLEELDVSSNLLQSLP----DSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN 252
           +L  LD+ +N L  LP    D    L++LK L +  NKL  LP  I R + L  L    N
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDR---LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145

Query: 253 NLVCLP 258
            L  +P
Sbjct: 146 QLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 156 DLADRQLKLLPEA-FGRLRGLVSLNLSRNLLEAMP----DSIAGLQKLEELDVSSNLLQS 210
            L   QL  LP   F  L  L  L+L  N L  +P    D    L  L+EL +  N L  
Sbjct: 70  YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR---LVHLKELFMCCNKLTE 126

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTLPE 236
           LP  I  L +L  L +  N+L ++P 
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 153 ETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
             +DL   QL +LP   F RL  L  L +  N L  +P  I  L  L  L +  N L+S+
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI 150

Query: 212 PDSIGLLLNLKVL 224
           P   G    L  L
Sbjct: 151 PH--GAFDRLSSL 161

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC--EMRSLKYLD 295
           A C      +D +   L  +P +I    L+   L +  N+L           +  L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 296 AHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALP 353
              N+L G+   A    + ++ L L  N   + E+   +   L  L+ L+L +NQI  + 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

Query: 354 D-TFFRLENLTKLNLDQNPL 372
             +F  L +LT LNL  NP 
Sbjct: 119 PGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 9/105 (8%)

Query: 277 KLRTFPPSICEMRSLKYLDAHFNELHGLPRA--IGKLTRLEVLNLSSNFNDLTELPETIG 334
            L+  P  I        L  + NEL  +      G+L  L  L L  N   LT +     
Sbjct: 19  GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAF 74

Query: 335 D-LINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPL-VIPP 376
           +   +++EL L  N+I+ + +  F  L  L  LNL  N +  + P
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 156 DLADRQLKLLPEA--FGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLP 212
            L D +L  +     FGRL  LV L L RN L  +  +   G   ++EL +  N ++ + 
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94

Query: 213 DSI-GLLLNLKVLNVSGNKLNTLPE 236
           + +   L  LK LN+  N+++ +  
Sbjct: 95  NKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 199 EELDVSSNLLQSLPDSIGL--LLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLV 255
            EL ++ N L  +        L +L  L +  N+L  +  +     S + EL    N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPP 283
            +   +  GL  L+ L++  N++    P
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMP 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 10/138 (7%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-EMRSLKYLDA 296
           +RCS S  E+  +   L  +PT I     +  RL ++ NKL++ P  +  ++  L  L  
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 297 HFNELHGLPRAI-GKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD 354
             N++  LP  +  KLT+L +L L  N   L  LP  + D L  L+EL L  NQ++++PD
Sbjct: 60  SQNQIQSLPDGVFDKLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117

Query: 355 -TFFRLENLTKLNLDQNP 371
             F RL +L K+ L  NP
Sbjct: 118 GIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 292 KYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQI 349
             L+   N+L  LP     KLT+L  L+LS N   +  LP+ + D L  L  L L  N++
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQN--QIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 350 RALPDTFF-RLENLTKLNLDQNPL 372
           ++LP+  F +L  L +L LD N L
Sbjct: 89  QSLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 312 TRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQ 369
           +    L L    N L  LP  + D L  L +L LS NQI++LPD  F +L  LT L L +
Sbjct: 28  SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 370 NPL 372
           N L
Sbjct: 86  NKL 88

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 156 DLADRQL-KLLPEAFGRLRGLVSLNLSRNLLEAMP----DSIAGLQKLEELDVSSNLLQS 210
           +L   +L  L    F +L  L  L+LS+N ++++P    D    L KL  L +  N LQS
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK---LTKLTILYLHENKLQS 90

Query: 211 LPDSI-GLLLNLKVLNVSGNKLNTLPE 236
           LP+ +   L  LK L +  N+L ++P+
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPD 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.1 bits (176), Expect = 5e-14
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRE 341
           P  C       L    +        +     L  L + +    L  L    +  L  LR 
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ-QHLQHLELRDLRGLGELRN 60

Query: 342 LDLSNNQIRAL-PDTFFRLENLTKLNLDQNPL-VIPP 376
           L +  + +R + PD F     L++LNL  N L  +  
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 276 NKLRTFPPSICEMRSLKYLD-AHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL-PET 332
           +        +    +L  L   +   L  L    +  L  L  L +  +   L  + P+ 
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--GLRFVAPDA 75

Query: 333 IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLV 373
                 L  L+LS N + +L     +  +L +L L  NPL 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK-LNTLP-ESIARCSSLVELDASFNNLVCL 257
            L  + +        +    NL  L +   + L  L    +     L  L    + L  +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 258 PTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELH 302
             +  +    L RL++  N L +      +  SL+ L    N LH
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRN-LLEAMPD-SIAGLQKLEELDVSSNLLQSL 211
            +                   L  L +     L+ +    + GL +L  L +  + L+ +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 212 -PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVC 256
            PD+      L  LN+S N L +L     +  SL EL  S N L C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 20/179 (11%)

Query: 137 EDVVKILQEAESGVV--VETVDL--ADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI 192
           +D ++I +E +S V    E V+L      ++ +      L+    L LS N +E +  S+
Sbjct: 8   KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSL 66

Query: 193 AGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN 252
           +G++ L  L +  NL++ + +   +   L+ L +S N++ +L   I +  +L  L  S N
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNN 125

Query: 253 NLVCLPTNIGY--GLLNLERLSIKLNKLRTFPPSICE-----------MRSLKYLDAHF 298
            +      I     L  LE L +  N L                    + +LK LD   
Sbjct: 126 KITNW-GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP 183

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 244 LVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG 303
            VEL      +  +   +   L   + L++  N +      +  M +L+ L    N +  
Sbjct: 27  KVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKK 84

Query: 304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD--TFFRLEN 361
           +         LE L +S N   +  L   I  L+NLR L +SNN+I    +      L+ 
Sbjct: 85  IENLDAVADTLEELWISYNQ--IASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 362 LTKLNLDQNPLVIPPME 378
           L  L L  NPL     E
Sbjct: 142 LEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQ 369
             T  E + L      + ++  T+  L   + L LS N I  +  +   +ENL  L+L +
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGR 79

Query: 370 N 370
           N
Sbjct: 80  N 80

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 58/301 (19%), Positives = 91/301 (30%), Gaps = 63/301 (20%)

Query: 136 NEDVVKILQEAESGVVVETVDLADRQL-----KLLPEAFGRLRGLVSLNLSRNLLEAMPD 190
            ED   +         V+ + L+   +     + L E     + L     S         
Sbjct: 18  TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT----- 72

Query: 191 SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL-----NTLPESIARCSSLV 245
              G  K E  +    LLQ+L         L  + +S N         L + +++ + L 
Sbjct: 73  ---GRVKDEIPEALRLLLQALLKCP----KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 246 ELDASFNNL-------------VCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEM--- 288
            L    N L                          L  +    N+L         +    
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 289 -RSLKYLDAHFNEL------HGLPRAIGKLTRLEVLNLSSN-FND--LTELPETIGDLIN 338
            R L  +    N +      H L   +     L+VL+L  N F     + L   +    N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 339 LRELDLSNNQIR-----ALPDTFFRLEN--LTKLNLDQNPLVIPPMEIVNKGVEAVKEFM 391
           LREL L++  +      A+ D F +LEN  L  L L  N       EI    V  +K  +
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-------EIELDAVRTLKTVI 298

Query: 392 A 392
            
Sbjct: 299 D 299

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 42/194 (21%)

Query: 219 LNLKVLNVSGNKLN-----TLPESIARCSSLVELDASFNNL---------VCLPTNIGYG 264
            +++  ++  + +      ++   +    S+ E+  S N +           + +     
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 265 LLNLERLSIKLNK------LRTFPPSICEMRSLKYLDAHFNEL-----HGLPRAIGKLTR 313
           +     +     K      LR    ++ +   L  +    N         L   + K T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 314 LEVLNLSSN----------FNDLTELPETIGDLIN--LRELDLSNNQI-----RALPDTF 356
           LE L L +N             L EL           LR +    N++     +    TF
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 357 FRLENLTKLNLDQN 370
                L  + + QN
Sbjct: 184 QSHRLLHTVKMVQN 197

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 30/136 (22%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297
           ++CS S   +D S  +L  +PT I       + L +  N++    P +            
Sbjct: 5   SQCSCSGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGV------------ 49

Query: 298 FNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD-T 355
           F+          +LT+L  L+L +N   LT LP  + D L  L +L L++NQ++++P   
Sbjct: 50  FD----------RLTQLTRLDLDNN--QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97

Query: 356 FFRLENLTKLNLDQNP 371
           F  L++LT + L  NP
Sbjct: 98  FDNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRE 341
           PS C   S   +D     L  +P  I   T  +VL L    N +T+L   + D L  L  
Sbjct: 4   PSQCSC-SGTTVDCSGKSLASVPTGI--PTTTQVLYL--YDNQITKLEPGVFDRLTQLTR 58

Query: 342 LDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
           LDL NNQ+  LP   F +L  LT+L+L+ N L
Sbjct: 59  LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 29/170 (17%)

Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
           + L+  L+E          +  ELD+    +  + +    L     ++ S N++  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 238 IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297
                 L  L  + N +  +   +   L +L  L +  N        + E+  L  L   
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-------LVELGDLDPL--- 109

Query: 298 FNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE----TIGDLINLRELD 343
                        L  L  L +    N +T         I  +  +R LD
Sbjct: 110 -----------ASLKSLTYLCILR--NPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 16/153 (10%)

Query: 223 VLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI---KLNKLR 279
           ++ ++   +              ELD     +  +  N+G  L   + +     ++ KL 
Sbjct: 1   MVKLTAELIEQA-AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD 58

Query: 280 TFPPSICEMRSLKYLDAHFNELHGLPRAIG-KLTRLEVLNLSSNF-NDLTELPETIGDLI 337
            FP     +R LK L  + N +  +   +   L  L  L L++N   +L +L + +  L 
Sbjct: 59  GFPL----LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLK 113

Query: 338 NLRELDLSNNQIRALPD----TFFRLENLTKLN 366
           +L  L +  N +           +++  +  L+
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 265 LLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFN 324
            +    L ++  K+         +     +D   NE+  L      L RL+ L +++N  
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR- 75

Query: 325 DLTELPETIGD-LINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPLV 373
            +  + E +   L +L EL L+NN +  L D      L++LT L + +NP+ 
Sbjct: 76  -ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
                 L+L    +  + +  A L + + +D S N ++ L D   LL  LK L V+ N++
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI 76

Query: 232 NTLPESIAR-CSSLVELDASFNNLVCLPTNIGY--GLLNLERLSIKLNKLRTFPP----S 284
             + E + +    L EL  + N+LV L  ++     L +L  L I  N +          
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 135

Query: 285 ICEMRSLKYLD 295
           I ++  ++ LD
Sbjct: 136 IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLREL 342
                    + LD    ++  +      L + + ++ S   N++ +L +    L  L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS--DNEIRKL-DGFPLLRRLKTL 69

Query: 343 DLSNNQIRALPDTFFR-LENLTKLNLDQN 370
            ++NN+I  + +   + L +LT+L L  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNN 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIA-GLQKLEELDVSSNLLQSL 211
           + +D +D +++ L + F  LR L +L ++ N +  + + +   L  L EL +++N L  L
Sbjct: 45  DAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 212 PDSIGL--LLNLKVLNVSGNKLNTLPE----SIARCSSLVELD 248
            D   L  L +L  L +  N +          I +   +  LD
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQS 210
           V  + L   Q  L+P+     + L  ++LS N +  + +   + + +L  L +S N L+ 
Sbjct: 33  VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 211 LPDSI-GLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVC 256
           +P      L +L++L++ GN ++ +PE      S+L  L    N L C
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 50/174 (28%)

Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT 259
            +  S+  L+ LP   G+  ++  L + GN+   +P+ ++    L  +D S N +  L  
Sbjct: 14  VVRCSNKGLKVLP--KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71

Query: 260 NIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNL 319
                +  L  L +  N+LR  PP                                    
Sbjct: 72  QSFSNMTQLLTLILSYNRLRCIPPRT---------------------------------- 97

Query: 320 SSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
              F+ L           +LR L L  N I  +P+  F  L  L+ L +  NPL
Sbjct: 98  ---FDGLK----------SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 301 LHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFFRL 359
           L  LP+ I +      L L  + N  T +P+ + +  +L  +DLSNN+I  L + +F  +
Sbjct: 22  LKVLPKGIPRDV--TELYL--DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77

Query: 360 ENLTKLNLDQNPL-VIPP 376
             L  L L  N L  IPP
Sbjct: 78  TQLLTLILSYNRLRCIPP 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 91/539 (16%), Positives = 165/539 (30%), Gaps = 170/539 (31%)

Query: 7   NYPLLV----------------FVLSQLNP--NDHPPLPP------QVYNNLITKYPHLT 42
           NY  L+                ++  Q +   ND+           Q Y  L      L 
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 43  NSTVI----------SSLTQGV----PVQITQTR----LLLGTRPDPDTVSAARSKL-AQ 83
            +  +          + +   V     VQ         L L     P+TV     KL  Q
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 84  FQETATSSPEVDLYRAVVKLEEMHED-----CERQFKEAEEMLDRVYDSVSAELVDVNED 138
                TS  +       +++  +  +       + ++    +L  V ++ +    +++  
Sbjct: 209 IDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-- 265

Query: 139 VVKIL--------QEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD 190
             KIL         +  S      + L    + L P+           +L    L+  P 
Sbjct: 266 -CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--------VKSLLLKYLDCRPQ 316

Query: 191 SIAGLQKLEELDVSSNLLQSLPDSIGLLL--------NLKVLNVSGNKLNTLPESIARCS 242
            +       E+  ++    S+   I   +        N K  +V+ +KL T+ ES     
Sbjct: 317 DLP-----REVLTTNPRRLSI---IAESIRDGLATWDNWK--HVNCDKLTTIIESSLNVL 366

Query: 243 SLVELDASFNNLVCLP--TNIGYGLLNL----------ERLSIKLNKL----RTFPPSIC 286
              E    F+ L   P   +I   LL+L            +  KL+K     +    S  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 287 EMRSLKYLDAHFN-----ELHGLPRAIGKLTRLEVLNLSSNF--NDLTELPET------I 333
            + S+ YL+          LH   R+I     ++  N+   F  +DL            I
Sbjct: 427 SIPSI-YLELKVKLENEYALH---RSI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 334 GD-LINLRE-----------LDLS--NNQIRA----------LPDTFFRLENLTKLNLDQ 369
           G  L N+             LD      +IR           + +T  +L+       D 
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 370 NPLVIPPMEIVNKGVEAVKEFMAKRWDGIIAEAQQKSIL-------------EANKQQQ 415
           +P       +VN    A+ +F+  + +  +  ++   +L             EA+KQ Q
Sbjct: 538 DPK---YERLVN----AILDFL-PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 30/136 (22%)

Query: 239 ARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297
           ++CS     ++     L  +P  I     + +RL +  N++    P +            
Sbjct: 8   SQCSCDQTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGV------------ 52

Query: 298 FNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRELDLSNNQIRALPD-T 355
           F+           L  L+ L  +SN   LT +P  + D L  L +LDL++N ++++P   
Sbjct: 53  FD----------HLVNLQQLYFNSN--KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100

Query: 356 FFRLENLTKLNLDQNP 371
           F  L++LT + L  NP
Sbjct: 101 FDNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD-LINLRE 341
           PS C       ++     L  +P  I   T  + L L  N N +T+L   + D L+NL++
Sbjct: 7   PSQCSC-DQTLVNCQNIRLASVPAGI--PTDKQRLWL--NNNQITKLEPGVFDHLVNLQQ 61

Query: 342 LDLSNNQIRALPDTFF-RLENLTKLNLDQNPL 372
           L  ++N++ A+P   F +L  LT+L+L+ N L
Sbjct: 62  LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 51/245 (20%), Positives = 76/245 (31%), Gaps = 53/245 (21%)

Query: 175 LVSLNLSRNLL-----EAMPDSIAGLQKLEELDVSSN---------LLQSLPDSIGLLLN 220
           L  L L    L     E +   +      +EL VS+N         L Q L DS      
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS---PCQ 200

Query: 221 LKVLNVSGNKLNT-----LPESIARCSSLVELDASFNNL-----VCLPTNIGYGLLNLER 270
           L+ L +    + +     L   +A  +SL EL    N L       L   + +    L  
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 271 LSIKLNKL-----RTFPPSICEMRSLKYLDAHFNEL-----HGLPRAIGK-LTRLEVLNL 319
           L I    +           +    SLK L    NEL       L   + +   +LE L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 320 SSNF---NDLTELPETIGDLINLRELDLSNNQI---------RALPDTFFRLENLTKLNL 367
            S        +     +     L EL +SNN++         + L         L  L L
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP---GSVLRVLWL 377

Query: 368 DQNPL 372
               +
Sbjct: 378 ADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 52/261 (19%), Positives = 88/261 (33%), Gaps = 49/261 (18%)

Query: 157 LADRQLKLLPEAFGRLRGLVSLNLSRNLL--EAMPDSIAGLQ----KLEELDVSSNLL-- 208
           L + + K +  A      L  LNL  N L    +   + GLQ    K+++L + +  L  
Sbjct: 40  LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99

Query: 209 ---QSLPDSIGLLLNLKVLNVSGNKLN-----TLPESIAR-CSSLVELDASFNNLVCLPT 259
                L  ++  L  L+ L++S N L       L E +      L +L   + +L    +
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL----S 155

Query: 260 NIGYGLL--------NLERLSIKLNKLRTFP-PSICEM-----RSLKYLDAHFNEL---- 301
                 L        + + L++  N +       +C+        L+ L      +    
Sbjct: 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 302 -HGLPRAIGKLTRLEVLNLSSNF---NDLTELPETIGD-LINLRELDLSNNQI-----RA 351
              L   +     L  L L SN      + EL   +      LR L +    I       
Sbjct: 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275

Query: 352 LPDTFFRLENLTKLNLDQNPL 372
           L       E+L +L+L  N L
Sbjct: 276 LCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 34/210 (16%)

Query: 196 QKLEELDVSSNLL--QSLPDSIGLLLNLKVLNVSGNKLN-----TLPESIARCSSLVELD 248
             ++ LD+    L      + + LL   +V+ +    L       +  ++    +L EL+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 249 ASFNNL-----VCLPTNIGYGLLNLERLSIKLNKL-----RTFPPSICEMRSLKYLDAHF 298
              N L      C+   +      +++LS++   L          ++  + +L+ L    
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 299 NELH--GLPRAIGKL-----TRLEVLNLSSN---FNDLTELPETIGDLINLRELDLSNNQ 348
           N L   GL + + +       RLE L L            L   +    + +EL +SNN 
Sbjct: 123 NLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 349 I-----RALPDTFFRLE-NLTKLNLDQNPL 372
           I     R L          L  L L+   +
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 54/259 (20%), Positives = 89/259 (34%), Gaps = 42/259 (16%)

Query: 156 DLADRQLKLLPEAFGRLR-GLVSLNLSRNLL-----EAMPDSIAGLQKLEELDVSSNLL- 208
           D+ +  +++L +        L +L L    +       +   +A    L EL + SN L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 209 ----QSLPDSI-GLLLNLKVLNVSGNKL-----NTLPESIARCSSLVELDASFNNL---- 254
                 L   +      L+ L +    +       L   +    SL EL  + N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 255 -VCLPTNIGYGLLNLERLSIKLNKL-----RTFPPSICEMRSLKYLDAHFNELH-----G 303
              L   +      LE L +K           F   + + R L  L    N L       
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 304 LPRAIGK-LTRLEVLNLSSNF---NDLTELPETIGDLINLRELDLSNNQI-----RALPD 354
           L + +G+  + L VL L+      +  + L  T+    +LRELDLSNN +       L +
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 355 TFFRLE-NLTKLNLDQNPL 372
           +  +    L +L L     
Sbjct: 421 SVRQPGCLLEQLVLYDIYW 439

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 266 LNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND 325
           L L+       K+        E  +L++L      L  +   + KL +L+ L LS   N 
Sbjct: 29  LVLDNCKSNDGKIEGL---TAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELS--ENR 82

Query: 326 LTELPETIGD-LINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPLV 373
           +    + + + L NL  L+LS N+++ +       +LE L  L+L    + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNEL-HGL 304
            LD   +N   +        +NLE LS+    L +    + ++  LK L+   N +  GL
Sbjct: 30  VLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGL 87

Query: 305 PRAIGKLTRLEVLNLSSNF-NDLTELPETIGDLINLRELDLSNNQIRALPD----TFFRL 359
                KL  L  LNLS N   D++ L E +  L  L+ LDL N ++  L D     F  L
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 360 ENLTKL 365
             LT L
Sbjct: 147 PQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 33/182 (18%), Positives = 74/182 (40%), Gaps = 30/182 (16%)

Query: 174 GLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN 232
           G   +++ R +   + + + A +++L  LD   +    +       +NL+ L++    L 
Sbjct: 4   GSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI 62

Query: 233 TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLK 292
           ++  ++ +   L +L+ S N +      +   L NL  L++  NK       + ++ +L+
Sbjct: 63  SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-------LKDISTLE 114

Query: 293 YLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE----TIGDLINLRELDLSNNQ 348
            L               KL  L+ L+L +   ++T L +        L  L  LD  + +
Sbjct: 115 PLK--------------KLECLKSLDLFN--CEVTNLNDYRESVFKLLPQLTYLDGYDRE 158

Query: 349 IR 350
            +
Sbjct: 159 DQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 138 DVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAG-LQ 196
           +  KI       V +E + L +  L  +     +L  L  L LS N +    D +A  L 
Sbjct: 37  NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 197 KLEELDVSSNLLQSLPDSIGL--LLNLKVLNVSGNKLNTLPE----SIARCSSLVELD 248
            L  L++S N L+ +     L  L  LK L++   ++  L +           L  LD
Sbjct: 96  NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
           +  L L +  ++  ++     + +NL  L L N  + ++ +   +L  L KL L +N
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSEN 81

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 34/154 (22%)

Query: 220 NLKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNK 277
           ++K L +  ++ N   L         L  L      L  +         NL +L      
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--------NLPKL------ 63

Query: 278 LRTFPPSICEMRSLKYLDAHFNELHGLPRAIG-KLTRLEVLNLSSNF-NDLTELPETIGD 335
                        LK L+   N + G    +  K   L  LNLS N   DL+ + E +  
Sbjct: 64  -----------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKK 111

Query: 336 LINLRELDLSNNQIRALPD----TFFRLENLTKL 365
           L NL+ LDL N ++  L D     F  L  LT L
Sbjct: 112 LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 266 LNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND 325
           L L+       KL        E   L++L      L  +   + KL +L+ L LS   N 
Sbjct: 22  LVLDNSRSNEGKLEGL---TDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELS--DNR 75

Query: 326 LTELPETIGD-LINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPL 372
           ++   E + +   NL  L+LS N+I+ L       +LENL  L+L    +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE 236
            L+ SR+    +       ++LE L   +  L S+ + +  L  LK L +S N+++   E
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSGGLE 81

Query: 237 SIAR-CSSLVELDASFNNLVCLPTNIGY--GLLNLERLSIKLNKLRTFPP----SICEMR 289
            +A  C +L  L+ S  N +   + I     L NL+ L +   ++             + 
Sbjct: 82  VLAEKCPNLTHLNLS-GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140

Query: 290 SLKYLD 295
            L YLD
Sbjct: 141 QLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 28/148 (18%)

Query: 200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT 259
            LD S +    L         L+ L+     L ++  ++ + + L +L+ S N +     
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLE 81

Query: 260 NIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNL 319
            +     NL  L++  NK       I ++ +++ L               KL  L+ L+L
Sbjct: 82  VLAEKCPNLTHLNLSGNK-------IKDLSTIEPL--------------KKLENLKSLDL 120

Query: 320 SSNFNDLTELPE----TIGDLINLRELD 343
            +   ++T L +        L  L  LD
Sbjct: 121 FN--CEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
           ++ L L ++ ++  +L     +   L  L   N  + ++ +   +L  L KL L  N
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDN 74

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 61/247 (24%)

Query: 175 LVSLNLSRNLL-----EAMPDSIAGLQ-KLEELDVSSNLLQSLPDSIGLL--------LN 220
           + SLNLS N L     + +  ++A +   +  LD+  N       S             +
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS--SKSSSEFKQAFSNLPAS 139

Query: 221 LKVLNVSGNKL-----NTLPESIARC-SSLVELDASFNNLVCLPTNIGYGLL-------- 266
           +  LN+ GN L     + L + +A   +++  L+   NNL     +     L        
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL----ASKNCAELAKFLASIP 195

Query: 267 -NLERLSIKLNKLRTFP-PSICEM-----RSLKYLDAHFNELHG-----LPRAIGKLTRL 314
            ++  L +  N L       +  +       +  L+   N LHG     L      L  L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 315 EVLNLSSN-FNDLTE-----LPETIGDLINLRELDLSNNQI---------RALPDTFFRL 359
           + + L  +   ++++     L     ++  +  +D +  +I           + +   + 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 360 ENLTKLN 366
           +  + LN
Sbjct: 316 DVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 48/257 (18%), Positives = 97/257 (37%), Gaps = 50/257 (19%)

Query: 163 KLLPEAFGRLRGLVSLNLSRN---------LLEAMPDSIAGLQKLEELDVSSNLL----- 208
             + E      G+ SL+LS N         L++A  ++ A    +  L++S N L     
Sbjct: 12  NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA---SVTSLNLSGNSLGFKNS 68

Query: 209 QSLPDSIGLL-LNLKVLNVSGNKL-----NTLPESIARC-SSLVELDASFNNL-----VC 256
             L   +  +  N+  LN+SGN L     + L +++A    ++  LD  +N+        
Sbjct: 69  DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128

Query: 257 LPTNIGYGLLNLERLSIKLNKLRTFP-PSICEM-----RSLKYLDAHFNELH-----GLP 305
                     ++  L+++ N L       + ++      ++  L+   N L       L 
Sbjct: 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188

Query: 306 RAIGKL-TRLEVLNLSSNF---NDLTELPETIGDL-INLRELDLSNNQI-----RALPDT 355
           + +  +   +  L+LS+N        EL      +  ++  L+L  N +       L   
Sbjct: 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 356 FFRLENLTKLNLDQNPL 372
              L++L  + LD + +
Sbjct: 249 KDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 47/204 (23%)

Query: 175 LVSLNLSRNLL-----EAMPDSIAGL-QKLEELDVSSNLLQSLPDSIGLLL--------N 220
           + SLNL  N L       +   +A +   +  LD+S+NLL     S   L         +
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG--LKSYAELAYIFSSIPNH 226

Query: 221 LKVLNVSGNKLN-----TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL 275
           +  LN+  N L+      L         L  +   ++ +     N+              
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV----KNMSK------------ 270

Query: 276 NKLRTFPPSICEMRSLKYLDAHFNELH-----GLPRAIGKL-TRLEVLNLSSN-FNDLTE 328
            + +    +   ++ +  +D +  E+H      +   I +L  + +V +L +       +
Sbjct: 271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQK 330

Query: 329 LPETIGDLIN---LRELDLSNNQI 349
               I DL     LRE   +   +
Sbjct: 331 HQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 50/273 (18%), Positives = 100/273 (36%), Gaps = 52/273 (19%)

Query: 152 VETVDLADRQL-----KLLPEAFGRLR-GLVSLNLSRNLL-----EAMPDSIAGL-QKLE 199
           V ++DL+   L       L +AF      + SLNLS N L     + +   +A +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 200 ELDVSSNLL-----QSLPDSI-GLLLNLKVLNVSGNKL-----NTLPESIARC-SSLVEL 247
            L++S N L       L  ++  +   + VL++  N       +   ++ +   +S+  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 248 DASFNNL-----VCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEM-----RSLKYLDA 296
           +   N+L       L   +     N+  L+++ N L +     + +       S+  LD 
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203

Query: 297 HFNEL-----HGLPRAIGKL-TRLEVLNLSSNFND---LTELPETIGDLINLRELDLSNN 347
             N L       L      +   +  LNL  N      L  L      L +L+ + L  +
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 348 QI--------RALPDTFFRLENLTKLNLDQNPL 372
            +        +AL   F  ++ +  ++ +   +
Sbjct: 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 338 NLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPL 372
           +  EL L+ N + ALP      L  L   +L  NP 
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 41/233 (17%), Positives = 76/233 (32%), Gaps = 28/233 (12%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNLSRNLL---EAMPDSIAGLQKLEELDVSSNLLQSLPDSI 215
           D  L+L+ ++F   +    L LS       + +    A  + L+ELD+  + +  +    
Sbjct: 119 DDCLELIAKSFKNFK---VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175

Query: 216 -----GLLLNLKVLNVSGNKLNTLPESI----ARCSSLVELDASFNNLVCLPTNIGYGLL 266
                    +L  LN+S         ++     RC +L  L  +    +     +     
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 267 NLERLSIK----------LNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEV 316
            LE L              + L        E+R L            LP      +RL  
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA--YLPAVYSVCSRLTT 293

Query: 317 LNLSSNFNDLTELPETIGDLINLRELDLSNN-QIRALPDTFFRLENLTKLNLD 368
           LNLS       +L + +     L+ L + +  +   L       ++L +L + 
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 33/246 (13%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNLSRNLL-EAMPDSIAGLQKLEELDVSSNLLQ--SLPDSI 215
                 L  A    + L  L+   + +   +P   +   +L  L++S   +Q   L   +
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310

Query: 216 GLLLNLKVLNVSGNKLNTLPESIAR-CSSLVELDASFNNLVCLPTN----------IGYG 264
                L+ L V     +   E +A  C  L EL    +    +  N          +  G
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 265 LLNLERL---------------SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG 309
              LE +               +     +  F   I E ++  YL        G    + 
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-DIGFGAIVE 429

Query: 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI--RALPDTFFRLENLTKLNL 367
               L  L+LS    D             +  L ++        +       ++L KL +
Sbjct: 430 HCKDLRRLSLSGLLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488

Query: 368 DQNPLV 373
              P  
Sbjct: 489 RDCPFG 494

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 25/206 (12%)

Query: 177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE 236
            + +      +    I    K+  +++         D      NL      G     +  
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGK--PHFAD-----FNLVPDGWGGYVYPWIEA 99

Query: 237 SIARCSSLVELDASFNNL--VCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEM----R 289
             +  + L E+      +   CL   I     N + L   L+    F    +  +    R
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLV--LSSCEGFSTDGLAAIAATCR 156

Query: 290 SLKYLDAHFNEL-----HGLPRAIGKLTRLEVLNLSSNFNDLTE--LPETIGDLINLREL 342
           +LK LD   +++     H L       T L  LN+S   ++++   L   +    NL+ L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 343 DLSNN-QIRALPDTFFRLENLTKLNL 367
            L+    +  L     R   L +L  
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGT 242

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 42/242 (17%), Positives = 72/242 (29%), Gaps = 45/242 (18%)

Query: 165 LPEAFGRLRGLVSLNLSRNLL--EAMPDSIAGLQKLEELDVSSNL-LQSLPDSIGLLLNL 221
           +P  F     +  L+L   LL  E     I     LE L+  + +  + L         L
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 222 KVLNVSGNKLNTLPE------------SIAR-CSSLVELDASFNNLVCLPTNIGYGLLNL 268
           K L +         E            ++A+ C  L  +    +++    TN    L ++
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI----TNES--LESI 398

Query: 269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNEL-HGLPR-------------------AI 308
                 L   R       E  +   LD     L  G  +                    I
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 309 GKL-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI--RALPDTFFRLENLTKL 365
           G+    +  + L         L E      NL++L++       RA+     +L +L  L
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 366 NL 367
            +
Sbjct: 519 WV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 44/231 (19%), Positives = 73/231 (31%), Gaps = 21/231 (9%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLS--RNLLEAMPDSIA-GLQKLEELDVSSN------ 206
            ++D  L  L  A  R   L +L L            SI    +K++ L +  +      
Sbjct: 123 IVSDLDLDRL--AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 207 --LLQSLPDSIGLL--LNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIG 262
              L  L      L  LN  +   +      L      C SLV +      ++ L     
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFF 239

Query: 263 YGLLNLERL-SIKLNKLRTFPP---SICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLN 318
               NLE      LN+    P    ++   R L  L   +   + +P       ++  L+
Sbjct: 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299

Query: 319 LSSNFNDLTELPETIGDLINLRELDLSNNQ-IRALPDTFFRLENLTKLNLD 368
           L     +  +    I    NL  L+  N    R L       + L +L ++
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 31/226 (13%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELD-----VSSNLLQSLPDSIGLLLNLKVLNV 226
           +  L+  N    +   + +    L++L+ +      VS   L  L  +     +L+ L +
Sbjct: 88  MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL--AKARADDLETLKL 145

Query: 227 SGNKL---NTLPESIARCSSLVELDASFNN--------LVCLPTNIGYGLLNLERLSIKL 275
                   + L   +  C  +  L    ++        L  L  +      +LE L+  +
Sbjct: 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH----NTSLEVLNFYM 201

Query: 276 NKLRTFPPSICE-----MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
            +     P   E      RSL  +     E+  L         LE     S  N+   +P
Sbjct: 202 TEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS-LNEDIGMP 260

Query: 331 ETIGDLINLRELDLSNNQI---RALPDTFFRLENLTKLNLDQNPLV 373
           E   +L+  R+L            +P  F     + KL+L    L 
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 27/201 (13%)

Query: 199 EELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP 258
            E +  S++   + ++     + + L            S      L  +  +   L  L 
Sbjct: 119 YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLK 178

Query: 259 TNIGYGLLNLERLSIKLNKLR----TFPPSICE------MRSLKYLDAHFNELHGLPRA- 307
                 L   ++    L  L       P S+ E      + +L+ L  +           
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 308 ---------IGKLTRLEVLNLSSN--FNDLTELPETIGDLINLRELDLSNNQI-----RA 351
                      +   L+ L +      N + E+      L  L  +D+S   +     R 
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 352 LPDTFFRLENLTKLNLDQNPL 372
           L D   ++++L  +N+  N L
Sbjct: 299 LLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 37/292 (12%), Positives = 90/292 (30%), Gaps = 27/292 (9%)

Query: 69  PDPDTVSAARSKLAQFQETATSSPEVDLYRAVVKLEEMHEDCERQ-FKEAEEMLDRVYDS 127
                   A  KL   +        ++     +K+E           +E   ++D++   
Sbjct: 44  SSAGEAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKD 103

Query: 128 VSAELVDVNEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA 187
                +          +  +   + + +     +       F          +S      
Sbjct: 104 KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD 163

Query: 188 MPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV-SGNKLNTLPESIA--RCSSL 244
           +   +  +  L  L +      S+        NLK L + SG   +++ E I      +L
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 245 VELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNEL-HG 303
            +L       + +         ++       +K R FP       +LK+L     E  + 
Sbjct: 222 EKLV------LYVGVEDYGFDGDMNVFRPLFSKDR-FP-------NLKWLGIVDAEEQNV 267

Query: 304 LPRAIGK---LTRLEVLNLSSNF---NDLTELPETIGDLINLRELDLSNNQI 349
           +     +   L +LE +++S+          L + +  + +L+ +++  N +
Sbjct: 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 157 LADRQLKLLPEAFGRLRGLVSLNLSRNLL--EAMPDSIAGLQKLEELDVSS-NLLQSLPD 213
                +            +  ++LS +++    +   ++   KL+ L +    L   + +
Sbjct: 77  CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136

Query: 214 SIGLLLNLKVLNVSGNKL---NTLPESIARCSSLVELDASFNNLV---CLPTNIGYGLLN 267
           ++    NL  LN+SG        L   ++ CS L EL+ S+        +   + +    
Sbjct: 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196

Query: 268 LERLSIKLNKLRTFP-----PSICE-MRSLKYLDAHFNEL---HGLPRAIGKLTRLEVLN 318
           + +L   L+  R         ++     +L +LD   + +       +   +L  L+ L+
Sbjct: 197 ITQL--NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLS 253

Query: 319 LSSNFNDLTEL-PETIGDLINLRELDLSN 346
           LS  ++ +       +G++  L+ L +  
Sbjct: 254 LSRCYD-IIPETLLELGEIPTLKTLQVFG 281

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 23/166 (13%)

Query: 219 LNLKVLNVSGNKL-----NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI 273
           +N K+L+    ++     ++ P          E       ++    +     L+L+ L  
Sbjct: 80  VNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS 139

Query: 274 KLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI----GKLTRLEVLNLSSN-FNDLTE 328
                             + +D   N    +   +      +  L  LNLS+N    L +
Sbjct: 140 ------------DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD 187

Query: 329 LPETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLV 373
           +   +    NL+ L+LS N++++  +    +   L +L LD N L 
Sbjct: 188 MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.93
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.21
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.85
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.75

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.2e-28  Score=240.26  Aligned_cols=227  Identities=26%  Similarity=0.332  Sum_probs=205.5

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  227 (458)
                      ....++.|++++|.++.+|..+..+++|++|++++|.++.+|..++++++|++|++++|.++.+|..+.++++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            35779999999999999999899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCchhhcC---------CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcc
Q 012694          228 GNK-LNTLPESIAR---------CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH  297 (458)
Q Consensus       228 ~n~-l~~l~~~l~~---------l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  297 (458)
                      +|+ +..+|..+..         +++|++|++++|.++.+|..+. .+++|++|++++|.++.+|..+..+++|++|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            974 4577776654         9999999999999999987754 8999999999999999999999999999999999


Q ss_pred             cCCCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694          298 FNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       298 ~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      +|.+.+ +|..++.+++|++|++++| ...+.+|..++.+++|+.|++++|++. .+|..++++++|+.+++..+.+...
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            988776 7888999999999999998 456788989999999999999998655 7899999999999999998877654


Q ss_pred             c
Q 012694          376 P  376 (458)
Q Consensus       376 ~  376 (458)
                      .
T Consensus       317 ~  317 (328)
T 4fcg_A          317 D  317 (328)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.3e-26  Score=225.90  Aligned_cols=225  Identities=23%  Similarity=0.333  Sum_probs=197.9

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  227 (458)
                      +.++.|++++|.++.++. .|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|..+.  ++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            579999999999998876 789999999999999999987 6789999999999999999999887664  799999999


Q ss_pred             CCCCCCCch-hhcCCCCCcEEEcCCCCCCc--CCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694          228 GNKLNTLPE-SIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       228 ~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      +|.++.++. .+.++++|++|++++|.++.  +....+..+++|+.|++++|.++.+|..+.  ++|++|++++|.++++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKV  207 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCcc
Confidence            999997754 58889999999999999874  555566689999999999999999887664  7999999999999986


Q ss_pred             -cccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          305 -PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       305 -~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                       +..+..+++|++|++++|  .+..++. .+..+++|++|++++|+|+.+|..+..+++|++|++++|+++..+...+
T Consensus       208 ~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          208 DAASLKGLNNLAKLGLSFN--SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CTGGGTTCTTCCEEECCSS--CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CHHHhcCCCCCCEEECCCC--cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence             568999999999999998  5566653 6888999999999999999999999999999999999999998876544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.5e-27  Score=227.36  Aligned_cols=224  Identities=29%  Similarity=0.360  Sum_probs=201.3

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc---chhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      +++++|++++|.++.+|. .|..+++|++|++++|.++.+   +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            579999999999999987 478999999999999999865   5678889999999999999999988899999999999


Q ss_pred             eeCCCCCCCch--hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc--CCccccCCCCCcEEEcccCCC
Q 012694          226 VSGNKLNTLPE--SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT--FPPSICEMRSLKYLDAHFNEL  301 (458)
Q Consensus       226 l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~l~~n~l  301 (458)
                      +++|+++.++.  .+..+++|++|++++|.++.+....+..+++|++|++++|.++.  +|..+..+++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            99999998764  78899999999999999998887777789999999999999985  788899999999999999999


Q ss_pred             CCc-cccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCC-chhhhCCC-CCcEEECcCCCCCCC
Q 012694          302 HGL-PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRAL-PDTFFRLE-NLTKLNLDQNPLVIP  375 (458)
Q Consensus       302 ~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~-~L~~L~L~~n~i~~~  375 (458)
                      +++ |..+..+++|++|++++|  .+..++. .+..+++|+.|++++|+|+.. +..+..++ +|++|++++|++.+.
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHN--NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTS--CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCcCHHHhcCCCCCCEEECCCC--ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            997 568999999999999998  5556654 678899999999999999965 56788884 999999999999865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.3e-27  Score=227.72  Aligned_cols=222  Identities=29%  Similarity=0.405  Sum_probs=199.3

Q ss_pred             CceeEEEecCCCCC---ccchhhCCCCCCcEEEccc-CCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccE
Q 012694          150 VVVETVDLADRQLK---LLPEAFGRLRGLVSLNLSR-NLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKV  223 (458)
Q Consensus       150 ~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~-n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~  223 (458)
                      .+++.|+++++.++   .+|..+..+++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999998   5889999999999999995 8776 77888999999999999999998 67889999999999


Q ss_pred             EEeeCCCCC-CCchhhcCCCCCcEEEcCCCCCC-cCCchhhccCC-CCCEEeccCCcCc-cCCccccCCCCCcEEEcccC
Q 012694          224 LNVSGNKLN-TLPESIARCSSLVELDASFNNLV-CLPTNIGYGLL-NLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFN  299 (458)
Q Consensus       224 L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~~l~-~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n  299 (458)
                      |++++|.++ .+|..+..+++|++|++++|.++ .++..+. .++ +|+.|++++|.++ .+|..+..++ |++|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999998 78889999999999999999998 6666665 676 9999999999998 7788888887 999999999


Q ss_pred             CCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694          300 ELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       300 ~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+++ +|..+..+++|++|++++|  .+...+..+..+++|++|++++|+|+ .+|..+..+++|++|++++|++++.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKN--SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSS--EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cccCcCCHHHhcCCCCCEEECCCC--ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            9987 5678999999999999998  44555555888999999999999999 7789999999999999999999843

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.2e-26  Score=225.97  Aligned_cols=206  Identities=31%  Similarity=0.420  Sum_probs=187.1

Q ss_pred             CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcC
Q 012694          171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDAS  250 (458)
Q Consensus       171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~  250 (458)
                      ...+++.|++++|.++.+|..+.++++|++|++++|.++.+|..++++++|++|++++|.++.+|..+.++++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCcCCchhh--------ccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccC
Q 012694          251 FNN-LVCLPTNIG--------YGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS  321 (458)
Q Consensus       251 ~n~-l~~l~~~~~--------~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~  321 (458)
                      +|+ ++.+|..+.        .++++|+.|++++|.++.+|..+..+++|++|++++|.++++|..+..+++|++|++++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence            965 456665543        35999999999999999999999999999999999999999998999999999999999


Q ss_pred             CCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694          322 NFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       322 n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                      | ...+.+|..++.+++|+.|++++|++. .+|..+..+++|++|+|++|++....+
T Consensus       239 n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          239 C-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             C-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             C-cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            8 345778888999999999999998655 678899999999999999998776543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=6e-27  Score=230.47  Aligned_cols=228  Identities=28%  Similarity=0.367  Sum_probs=199.1

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchh-hcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l  226 (458)
                      ++|++|++++|.++.++. .|..+++|++|++++|.++.++ ..++++++|++|++++|.++.++.. +.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            579999999999998876 7999999999999999999875 5699999999999999999999765 889999999999


Q ss_pred             eCCCCCCCch--hhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCC
Q 012694          227 SGNKLNTLPE--SIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       227 ~~n~l~~l~~--~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~  302 (458)
                      ++|+++.+|.  .+..+++|++|++++| .++.++...+.++++|++|++++|.++.+ +..+..+++|++|++++|.++
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9999999876  6888999999999999 58888777777899999999999999865 678899999999999999998


Q ss_pred             Ccccc-ccCCCcccEEEccCCCCCCC------------------------------ccchhhcCCCCCCEEeccCCCCCC
Q 012694          303 GLPRA-IGKLTRLEVLNLSSNFNDLT------------------------------ELPETIGDLINLRELDLSNNQIRA  351 (458)
Q Consensus       303 ~l~~~-l~~l~~L~~L~L~~n~~~~~------------------------------~l~~~l~~l~~L~~L~L~~n~l~~  351 (458)
                      .++.. +..+++|++|++++|.....                              .+|..+..+++|+.|++++|+|+.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            88753 45689999999999832211                              245667889999999999999999


Q ss_pred             Cchh-hhCCCCCcEEECcCCCCCCCcH
Q 012694          352 LPDT-FFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       352 l~~~-l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                      +|.. +..+++|++|++++|++.+...
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            9876 5899999999999999987643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.7e-26  Score=225.26  Aligned_cols=224  Identities=23%  Similarity=0.326  Sum_probs=190.4

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  227 (458)
                      ++++.|++++|.++.++. .|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|..+.  ++|++|+++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            578999999999987754 788999999999999999877 5678999999999999999998887665  789999999


Q ss_pred             CCCCCCCch-hhcCCCCCcEEEcCCCCCCc--CCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694          228 GNKLNTLPE-SIARCSSLVELDASFNNLVC--LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       228 ~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      +|+++.++. .+..+++|++|++++|.++.  +....+..+ +|+.|++++|.++.+|..+.  ++|++|++++|.++++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAI  208 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCcc
Confidence            999998865 47889999999999998864  444555455 89999999999998887654  6899999999999997


Q ss_pred             c-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          305 P-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       305 ~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                      + ..+..+++|++|++++|  .+..++ ..+..+++|+.|++++|+|+.+|..+..+++|++|++++|+++..+...+
T Consensus       209 ~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHN--QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSS--CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             CHHHhcCCCCCCEEECCCC--cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            6 67889999999999998  555665 46888999999999999999999889999999999999999998776544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5e-26  Score=217.06  Aligned_cols=220  Identities=26%  Similarity=0.334  Sum_probs=197.7

Q ss_pred             eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCC
Q 012694          152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n  229 (458)
                      -++++++++.++.+|..+  .++|++|++++|.++.++ ..+..+++|++|++++|.++.+ +..+.++++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            368999999999998754  469999999999999887 4689999999999999999987 678999999999999999


Q ss_pred             C-CCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc
Q 012694          230 K-LNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR  306 (458)
Q Consensus       230 ~-l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~  306 (458)
                      . ++.+ +..+..+++|++|++++|.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+++++.
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 8877 6788999999999999999999988777789999999999999998875 47889999999999999999875


Q ss_pred             -cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          307 -AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       307 -~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                       .+..+++|++|++++|  .+..+ |..+..+++|+.|++++|+|+.++ ..+..+++|++|++++|++.+.
T Consensus       171 ~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQN--RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             HHhcCccccCEEECCCC--cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence             5899999999999998  45555 678899999999999999999887 4689999999999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=3.5e-26  Score=228.02  Aligned_cols=225  Identities=26%  Similarity=0.314  Sum_probs=148.5

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchh-hcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~  225 (458)
                      +++|++|++++|.++.++. .|..+++|++|++++|.++.++ ..++++++|++|++++|.++.+|.. +.++++|++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            4667888888888776654 6777888888888888877764 4477788888888888888877655 47778888888


Q ss_pred             eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccC-------------------------------------CC
Q 012694          226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGL-------------------------------------LN  267 (458)
Q Consensus       226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l-------------------------------------~~  267 (458)
                      +++|+++.++ ..+..+++|++|++++|.++.++...+..+                                     ++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  227 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence            8888777664 457777888888888887776543322111                                     12


Q ss_pred             CCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC
Q 012694          268 LERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN  346 (458)
Q Consensus       268 L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~  346 (458)
                      |+.|++++|.++.. ..+..+++|++|++++|.++++ |..+..+++|++|++++|  .+..++..+..+++|++|++++
T Consensus       228 L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          228 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS--CCCEEECSSSCCTTCCEEECCS
T ss_pred             ccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC--cCcccCcccCCCCCCCEEECCC
Confidence            33333333333332 2345556666666666666664 455666666777777665  4555655556666777777777


Q ss_pred             CCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694          347 NQIRALPDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       347 n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      |+++.+|..+..+++|++|++++|+++..+
T Consensus       305 n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          305 NHLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             SCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CcceecCccccccCcCCEEECCCCccceeC
Confidence            777766666666677777777777666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.5e-26  Score=231.19  Aligned_cols=223  Identities=25%  Similarity=0.441  Sum_probs=200.3

Q ss_pred             CceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l  226 (458)
                      ++++.|++++|.++.+ +..|..+++|++|++++|.|+.++ ..|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            5799999999999977 458999999999999999999886 679999999999999999999865 5888999999999


Q ss_pred             eCCCCCCCch-hhcCCCCCcEEEcCC-CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694          227 SGNKLNTLPE-SIARCSSLVELDASF-NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       227 ~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      ++|+++.++. .+.++++|++|++++ +.++.++...+.++++|+.|++++|.++.+| .+..+++|++|++++|.++++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCccc
Confidence            9999998864 688899999999998 5688888888889999999999999999986 588899999999999999996


Q ss_pred             -cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          305 -PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       305 -~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                       |..+..+++|+.|++++|  .+..+ +..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++.+.
T Consensus       234 ~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNS--QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CcccccCccCCCEEEeCCC--cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence             578999999999999998  45555 566889999999999999999886 4678899999999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6e-26  Score=230.10  Aligned_cols=223  Identities=27%  Similarity=0.452  Sum_probs=200.5

Q ss_pred             CceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l  226 (458)
                      ++++.|++++|.++.++ ..|..+++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57999999999999776 58999999999999999999886 679999999999999999999865 6899999999999


Q ss_pred             eCCCCCCCch-hhcCCCCCcEEEcCC-CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694          227 SGNKLNTLPE-SIARCSSLVELDASF-NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       227 ~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      ++|+++.++. .+.++++|++|++++ +.++.++...+.++++|+.|++++|.++.+| .+..+++|++|++++|.++++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCcc
Confidence            9999998864 688899999999998 5678888888889999999999999999997 488999999999999999996


Q ss_pred             -cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          305 -PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       305 -~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                       +..+..+++|+.|++++|  .+..+ +..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++.+.
T Consensus       223 ~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTC--CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ChhhhccCccCCEEECCCC--ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence             578999999999999998  55555 456889999999999999999886 4678899999999999999764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=4.4e-27  Score=227.59  Aligned_cols=227  Identities=23%  Similarity=0.262  Sum_probs=199.9

Q ss_pred             hccCCCceeEEEecC-CCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCC
Q 012694          145 EAESGVVVETVDLAD-RQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLN  220 (458)
Q Consensus       145 ~~~~~~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~  220 (458)
                      .+...++|++|++++ |.+. .+|..|..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            344578999999995 8777 78889999999999999999998 78888999999999999999998 67889999999


Q ss_pred             ccEEEeeCCCCC-CCchhhcCCC-CCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcc
Q 012694          221 LKVLNVSGNKLN-TLPESIARCS-SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAH  297 (458)
Q Consensus       221 L~~L~l~~n~l~-~l~~~l~~l~-~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~  297 (458)
                      |++|++++|+++ .+|..+..++ +|++|++++|.++......+..+. |+.|++++|.++ ..+..+..+++|++|+++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            999999999998 8899999998 999999999999854444444666 999999999998 566778999999999999


Q ss_pred             cCCCCCccccccCCCcccEEEccCCCCCCC-ccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCC-CCC
Q 012694          298 FNELHGLPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNP-LVI  374 (458)
Q Consensus       298 ~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~-i~~  374 (458)
                      +|.+++.+..+..+++|++|++++|  .+. .+|..+..+++|+.|++++|+++ .+|.. ..+++|+.+++++|+ +.+
T Consensus       230 ~N~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          230 KNSLAFDLGKVGLSKNLNGLDLRNN--RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SSEECCBGGGCCCCTTCCEEECCSS--CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CCceeeecCcccccCCCCEEECcCC--cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            9999986666889999999999998  444 78889999999999999999998 66654 889999999999998 444


Q ss_pred             C
Q 012694          375 P  375 (458)
Q Consensus       375 ~  375 (458)
                      .
T Consensus       307 ~  307 (313)
T 1ogq_A          307 S  307 (313)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1e-25  Score=244.12  Aligned_cols=227  Identities=20%  Similarity=0.287  Sum_probs=131.8

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcc-cceeeeecCCCCCCchhhcCCCC--ccEEE
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQK-LEELDVSSNLLQSLPDSIGLLLN--LKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~-L~~L~L~~n~l~~l~~~l~~l~~--L~~L~  225 (458)
                      +++|+.|++++|.++.+| .|..+++|+.|++++|.++.+|..+.++++ |++|++++|.++.+|..+..+..  |+.|+
T Consensus       572 L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~  650 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD  650 (876)
T ss_dssp             CTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEE
T ss_pred             CCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEE
Confidence            344555555555544444 444445555555555555544444445544 55555555555444443333322  44444


Q ss_pred             eeCCCCCCCch----hhc--CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCC--------CCC
Q 012694          226 VSGNKLNTLPE----SIA--RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEM--------RSL  291 (458)
Q Consensus       226 l~~n~l~~l~~----~l~--~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l--------~~L  291 (458)
                      +++|+++..++    .+.  .+++|+.|++++|.++.++...+..+++|+.|++++|.++.+|..+...        ++|
T Consensus       651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L  730 (876)
T 4ecn_A          651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL  730 (876)
T ss_dssp             CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred             CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence            44444332111    111  2235666666666666666666666777777777777777666544332        267


Q ss_pred             cEEEcccCCCCCcccccc--CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC------CCCC-CCchhhhCCCCC
Q 012694          292 KYLDAHFNELHGLPRAIG--KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN------NQIR-ALPDTFFRLENL  362 (458)
Q Consensus       292 ~~L~l~~n~l~~l~~~l~--~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~------n~l~-~l~~~l~~l~~L  362 (458)
                      ++|++++|.++.+|..+.  .+++|+.|+|++|  .+..+|..+..+++|+.|+|++      |++. .+|..+..+++|
T Consensus       731 ~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN--CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL  808 (876)
T ss_dssp             CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             cEEECCCCCCccchHHhhhccCCCcCEEEeCCC--CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence            777777777777776665  7777777777776  4455676777777777777765      4444 556677777777


Q ss_pred             cEEECcCCCCCCCcHH
Q 012694          363 TKLNLDQNPLVIPPME  378 (458)
Q Consensus       363 ~~L~L~~n~i~~~~~~  378 (458)
                      +.|+|++|++..+|..
T Consensus       809 ~~L~Ls~N~L~~Ip~~  824 (876)
T 4ecn_A          809 IQLQIGSNDIRKVDEK  824 (876)
T ss_dssp             CEEECCSSCCCBCCSC
T ss_pred             CEEECCCCCCCccCHh
Confidence            7777777777655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=9e-26  Score=225.06  Aligned_cols=221  Identities=24%  Similarity=0.284  Sum_probs=189.8

Q ss_pred             ccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCC-chhhcCCCCcc
Q 012694          146 AESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSL-PDSIGLLLNLK  222 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~  222 (458)
                      +...++|++|++++|.++.++. .|..+++|++|++++|.++.+|.. ++++++|++|++++|.++.+ +..+..+++|+
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            3467899999999999997754 689999999999999999999866 68999999999999999987 45689999999


Q ss_pred             EEEeeCCCCCCCchhhcCCC----------------------------------------CCcEEEcCCCCCCcCCchhh
Q 012694          223 VLNVSGNKLNTLPESIARCS----------------------------------------SLVELDASFNNLVCLPTNIG  262 (458)
Q Consensus       223 ~L~l~~n~l~~l~~~l~~l~----------------------------------------~L~~L~l~~n~l~~l~~~~~  262 (458)
                      +|++++|+++.++  +..++                                        +|+.|++++|.++..+  .+
T Consensus       169 ~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~--~l  244 (390)
T 3o6n_A          169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WL  244 (390)
T ss_dssp             EEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG--GG
T ss_pred             EEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH--HH
Confidence            9999999988653  22222                                        4555555555555542  34


Q ss_pred             ccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCE
Q 012694          263 YGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE  341 (458)
Q Consensus       263 ~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~  341 (458)
                      ..+++|++|++++|.++.+ +..+..+++|++|++++|.+++++..+..+++|++|++++|  .+..+|..+..+++|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~  322 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQFDRLEN  322 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHHHHTTCSE
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC--cceecCccccccCcCCE
Confidence            5789999999999999965 67899999999999999999999888889999999999998  67788888889999999


Q ss_pred             EeccCCCCCCCchhhhCCCCCcEEECcCCCCCC
Q 012694          342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       342 L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      |++++|+|+.++  +..+++|++|++++|++.+
T Consensus       323 L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          323 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             EECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             EECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence            999999999885  7889999999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.9e-26  Score=222.28  Aligned_cols=217  Identities=22%  Similarity=0.268  Sum_probs=193.3

Q ss_pred             CCCceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694          148 SGVVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l  226 (458)
                      ..++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.++.    .++|++|++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence            3568999999999999776 589999999999999999997765 9999999999999999987753    489999999


Q ss_pred             eCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccc-cCCCCCcEEEcccCCCCCc
Q 012694          227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSI-CEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       227 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l-~~l~~L~~L~l~~n~l~~l  304 (458)
                      ++|+++.++.  ..+++|++|++++|.++.++...+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|.++++
T Consensus       107 ~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             CSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            9999998754  34789999999999999998877778999999999999999653 444 4789999999999999998


Q ss_pred             cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCC
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      +. ...+++|++|++++|  .+..+|..+..+++|+.|++++|+|+.+|..+..+++|+.|++++|++.+
T Consensus       185 ~~-~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          185 KG-QVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             EC-CCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred             cc-ccccccCCEEECCCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC
Confidence            65 445899999999998  67788888999999999999999999999899999999999999999983

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-25  Score=236.06  Aligned_cols=225  Identities=26%  Similarity=0.312  Sum_probs=166.5

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCchh-hcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~  225 (458)
                      +++|++|++++|.++.++. .|..+++|++|++++|.++.+++ .|+++++|++|++++|.++.+|.. ++++++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            5778999999998887765 78888999999999998887764 478899999999999998888765 58889999999


Q ss_pred             eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccC-------------------------------------CC
Q 012694          226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGL-------------------------------------LN  267 (458)
Q Consensus       226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l-------------------------------------~~  267 (458)
                      +++|.++.++ ..+..+++|++|++++|.++.++...+..+                                     ++
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            9999888764 468888999999999988887653322111                                     12


Q ss_pred             CCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC
Q 012694          268 LERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN  346 (458)
Q Consensus       268 L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~  346 (458)
                      |+.|++++|.++.. ..+..+++|++|++++|.++++ |..++.+++|+.|+|++|  .+..+|..+..+++|+.|+|++
T Consensus       234 L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          234 LTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC--CCCCCCcccccCCCCcEEECCC
Confidence            33333344443332 3456677777777777777774 556777777777777776  5566666666777788888888


Q ss_pred             CCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694          347 NQIRALPDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       347 n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      |.++.+|..+..+++|++|+|++|+++..+
T Consensus       311 N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          311 NHLLHVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             SCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence            877777777777777777777777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=5.1e-26  Score=241.05  Aligned_cols=227  Identities=21%  Similarity=0.289  Sum_probs=137.7

Q ss_pred             CCCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCCccchhhcCCcc-cceeeeecCCCCCCchhhcCCC--CccE
Q 012694          148 SGVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQK-LEELDVSSNLLQSLPDSIGLLL--NLKV  223 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~-L~~L~L~~n~l~~l~~~l~~l~--~L~~  223 (458)
                      .+++|+.|++++|.++ .+| .+..+++|++|++++|.++.+|..+.++++ |++|++++|.++.+|..+..+.  +|++
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEE
T ss_pred             cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCE
Confidence            4455666666666666 555 555556666666666666656655666666 6666666666666665554433  5666


Q ss_pred             EEeeCCCCCC-Cchhhc-------CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccC--------
Q 012694          224 LNVSGNKLNT-LPESIA-------RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE--------  287 (458)
Q Consensus       224 L~l~~n~l~~-l~~~l~-------~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~--------  287 (458)
                      |++++|.++. +|..+.       .+++|++|++++|.++.++...+..+++|+.|++++|.++.+|.....        
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN  486 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence            6666665552 333444       455666666666666666666665566677777777666666543322        


Q ss_pred             CCCCcEEEcccCCCCCcccccc--CCCcccEEEccCCCCCCCccchhhcCCCCCCEEecc------CCCCC-CCchhhhC
Q 012694          288 MRSLKYLDAHFNELHGLPRAIG--KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS------NNQIR-ALPDTFFR  358 (458)
Q Consensus       288 l~~L~~L~l~~n~l~~l~~~l~--~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~------~n~l~-~l~~~l~~  358 (458)
                      +++|++|++++|.++.+|..+.  .+++|+.|+|++|  .+..+|..+..+++|+.|+++      +|++. .+|..+..
T Consensus       487 l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC--CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence            2266667777766666666555  6666777777666  444566666666666666663      34333 45666666


Q ss_pred             CCCCcEEECcCCCCCCCcH
Q 012694          359 LENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       359 l~~L~~L~L~~n~i~~~~~  377 (458)
                      +++|++|+|++|+++.+|.
T Consensus       565 l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          565 CPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             CSSCCEEECCSSCCCBCCS
T ss_pred             CCCCCEEECCCCcCCccCH
Confidence            6666666666666655544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=9.8e-26  Score=217.22  Aligned_cols=223  Identities=25%  Similarity=0.290  Sum_probs=198.0

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCC---chhhcCCCCccEEEeeC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSL---PDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l---~~~l~~l~~L~~L~l~~  228 (458)
                      +.++++++.++.+|..+.  ++|++|++++|.++.+|.. +.++++|++|++++|.++.+   +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            478999999999997554  6999999999999999865 79999999999999999865   56778899999999999


Q ss_pred             CCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCC--c
Q 012694          229 NKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHG--L  304 (458)
Q Consensus       229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~--l  304 (458)
                      |.++.+|..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+++  +
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            9999999889999999999999999998876 5666899999999999999854 5668889999999999999987  7


Q ss_pred             cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEI  379 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~  379 (458)
                      |..+..+++|++|++++|  .+..+ |..+..+++|+.|++++|+++.++ ..+..+++|++|++++|+++......
T Consensus       168 ~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             CSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             hhHHhhCcCCCEEECCCC--CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            888999999999999998  55666 567889999999999999999885 47889999999999999998765543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=5.5e-25  Score=214.34  Aligned_cols=222  Identities=23%  Similarity=0.346  Sum_probs=196.1

Q ss_pred             ccCCCceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-hhhcCCCCccE
Q 012694          146 AESGVVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKV  223 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~  223 (458)
                      +..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+|..+.  ++|++|++++|.++.++ ..+.++++|++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence            34578899999999999977 7789999999999999999999987654  79999999999999885 46899999999


Q ss_pred             EEeeCCCCC---CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccC
Q 012694          224 LNVSGNKLN---TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFN  299 (458)
Q Consensus       224 L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n  299 (458)
                      |++++|.++   ..+..+.++++|++|++++|.++.++....   ++|+.|++++|.++.+ +..+..+++|++|++++|
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            999999987   345678899999999999999999987654   8999999999999976 578899999999999999


Q ss_pred             CCCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCch-hhh------CCCCCcEEECcCCC
Q 012694          300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFF------RLENLTKLNLDQNP  371 (458)
Q Consensus       300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~------~l~~L~~L~L~~n~  371 (458)
                      .+++++. .+..+++|++|++++|  .+..+|..+..+++|++|++++|+|+.++. .+.      ..+.|+.|++++|+
T Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          227 SISAVDNGSLANTPHLRELHLNNN--KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cCceeChhhccCCCCCCEEECCCC--cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            9999764 7899999999999998  677999999999999999999999998863 343      24789999999999


Q ss_pred             CCC
Q 012694          372 LVI  374 (458)
Q Consensus       372 i~~  374 (458)
                      +..
T Consensus       305 ~~~  307 (330)
T 1xku_A          305 VQY  307 (330)
T ss_dssp             SCG
T ss_pred             ccc
Confidence            874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.4e-24  Score=212.83  Aligned_cols=219  Identities=21%  Similarity=0.340  Sum_probs=137.4

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+.++++|++|++++|.++.++. +..+++|++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~  138 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN  138 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred             hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence            3446778888888888777765 777788888888888777774 57777888888888887777755 66777777777


Q ss_pred             eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc
Q 012694          226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP  305 (458)
Q Consensus       226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~  305 (458)
                      +++|.....+..+..+++|++|++++|.+..++.  +..+++|+.|++++|.++.++. +..+++|+.|++++|.+++++
T Consensus       139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~  215 (347)
T 4fmz_A          139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT  215 (347)
T ss_dssp             CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence            7777433333446666777777777776666554  3356667777776666665543 555555555555555555544


Q ss_pred             ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          306 RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       306 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      . +..+++|++|++++|  .+..++. +..+++|++|++++|.++.+ +.+..+++|++|++++|.++..
T Consensus       216 ~-~~~~~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~  280 (347)
T 4fmz_A          216 P-VANMTRLNSLKIGNN--KITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI  280 (347)
T ss_dssp             G-GGGCTTCCEEECCSS--CCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC
T ss_pred             h-hhcCCcCCEEEccCC--ccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC
Confidence            3 455555555555554  3344433 45555555555555555554 2445555555555555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1.7e-25  Score=242.16  Aligned_cols=227  Identities=30%  Similarity=0.420  Sum_probs=151.0

Q ss_pred             CCCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEE
Q 012694          148 SGVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVL  224 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L  224 (458)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            3456666666666665 45556666666666666666666 45666666777777777777666 346666677777777


Q ss_pred             EeeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCcc------------------
Q 012694          225 NVSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPS------------------  284 (458)
Q Consensus       225 ~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~------------------  284 (458)
                      ++++|+++ .+|..++.+++|++|++++|.++......+..+++|+.|++++|.++ .+|..                  
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            77777666 55666677777777777777766333333336777777777777654 33322                  


Q ss_pred             ----------------------------------------------------ccCCCCCcEEEcccCCCCC-ccccccCC
Q 012694          285 ----------------------------------------------------ICEMRSLKYLDAHFNELHG-LPRAIGKL  311 (458)
Q Consensus       285 ----------------------------------------------------l~~l~~L~~L~l~~n~l~~-l~~~l~~l  311 (458)
                                                                          +..+++|++|++++|.+++ +|..++.+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                                                                2234567777777777775 66777777


Q ss_pred             CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCC
Q 012694          312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       312 ~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      ++|+.|+|++|.. .+.+|..++.+++|+.|||++|+++ .+|..+..+++|++|++++|++++.
T Consensus       656 ~~L~~L~Ls~N~l-~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          656 PYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             TTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             ccCCEEeCcCCcc-CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            7777777777722 2467777777777777777777777 6677777777777777777777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=3.2e-25  Score=240.23  Aligned_cols=231  Identities=20%  Similarity=0.291  Sum_probs=202.0

Q ss_pred             hccCCCceeEEEecCCCCCccchhhCCCCC-CcEEEcccCCCCccchhhcCCcc--cceeeeecCCCCCCch----hhc-
Q 012694          145 EAESGVVVETVDLADRQLKLLPEAFGRLRG-LVSLNLSRNLLEAMPDSIAGLQK--LEELDVSSNLLQSLPD----SIG-  216 (458)
Q Consensus       145 ~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~-L~~L~l~~n~i~~l~~~l~~l~~--L~~L~L~~n~l~~l~~----~l~-  216 (458)
                      .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.+|..+..+..  |++|++++|.++..+.    .+. 
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            455678999999999999999999999999 99999999999999987777654  9999999999875422    232 


Q ss_pred             -CCCCccEEEeeCCCCCCCchhhc-CCCCCcEEEcCCCCCCcCCchhhccC-------CCCCEEeccCCcCccCCcccc-
Q 012694          217 -LLLNLKVLNVSGNKLNTLPESIA-RCSSLVELDASFNNLVCLPTNIGYGL-------LNLERLSIKLNKLRTFPPSIC-  286 (458)
Q Consensus       217 -~l~~L~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~~~~~~~l-------~~L~~L~L~~n~l~~l~~~l~-  286 (458)
                       .+++|+.|++++|.++.+|..+. .+++|+.|++++|.++.++...+...       ++|+.|++++|.++.+|..+. 
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence             45689999999999999987765 79999999999999999998776533       389999999999999999887 


Q ss_pred             -CCCCCcEEEcccCCCCCccccccCCCcccEEEccCCC-----CCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCC
Q 012694          287 -EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF-----NDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLE  360 (458)
Q Consensus       287 -~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~-----~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~  360 (458)
                       .+++|+.|++++|.++++|..+..+++|+.|+|++|.     .-...+|..++.+++|+.|+|++|+|+.+|..+.  +
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~  827 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--P  827 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--S
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--C
Confidence             9999999999999999999999999999999998742     2245788899999999999999999999987765  6


Q ss_pred             CCcEEECcCCCCCCCcH
Q 012694          361 NLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       361 ~L~~L~L~~n~i~~~~~  377 (458)
                      +|+.|+|++|++.....
T Consensus       828 ~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          828 QLYILDIADNPNISIDV  844 (876)
T ss_dssp             SSCEEECCSCTTCEEEC
T ss_pred             CCCEEECCCCCCCccCh
Confidence            99999999999986654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=3.5e-24  Score=209.97  Aligned_cols=221  Identities=22%  Similarity=0.348  Sum_probs=161.8

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.....+..+..+++|++|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~  161 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT  161 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred             hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence            446688888888888888775 57888888888888888888765 7888888888888885443334477888888888


Q ss_pred             eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc
Q 012694          226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP  305 (458)
Q Consensus       226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~  305 (458)
                      +++|.+..++. +..+++|++|++++|.++.++.  +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++
T Consensus       162 l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          162 VTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             CCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             ecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc
Confidence            88888777654 7778888888888888777665  3467777777777777776644 666777777777777777766


Q ss_pred             ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694          306 RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       306 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                      . +..+++|++|++++|  .+..+ +.+..+++|+.|++++|+++.++ .+..+++|++|++++|+++..++
T Consensus       238 ~-~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~  304 (347)
T 4fmz_A          238 P-LANLSQLTWLEIGTN--QISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM  304 (347)
T ss_dssp             G-GTTCTTCCEEECCSS--CCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred             c-hhcCCCCCEEECCCC--ccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence            5 667777777777776  44454 34666777777777777777663 56667777777777777765443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=7.2e-26  Score=239.90  Aligned_cols=230  Identities=21%  Similarity=0.309  Sum_probs=178.5

Q ss_pred             ccCCCceeEEEecCCCCCc------------------cchhhC--CCCCCcEEEcccCCCC-ccchhhcCCcccceeeee
Q 012694          146 AESGVVVETVDLADRQLKL------------------LPEAFG--RLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVS  204 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~------------------l~~~~~--~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~  204 (458)
                      +..+++|++|++++|.++.                  +|..+.  .+++|++|++++|.+. .+|..++++++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            4456889999999999987                  888888  9999999999999765 678889999999999999


Q ss_pred             cCC-CCC--CchhhcCC------CCccEEEeeCCCCCCCch--hhcCCCCCcEEEcCCCCCC-cCCchhhccCCCCCEEe
Q 012694          205 SNL-LQS--LPDSIGLL------LNLKVLNVSGNKLNTLPE--SIARCSSLVELDASFNNLV-CLPTNIGYGLLNLERLS  272 (458)
Q Consensus       205 ~n~-l~~--l~~~l~~l------~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~L~  272 (458)
                      +|. ++.  +|..++.+      ++|++|++++|+++.+|.  .++++++|++|++++|.++ .+|  .+..+++|+.|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEE
Confidence            998 884  78877776      899999999999998888  8899999999999999988 777  444788888888


Q ss_pred             ccCCcCccCCccccCCCC-CcEEEcccCCCCCccccccCCC--cccEEEccCCCCCCCccchhhc-------CCCCCCEE
Q 012694          273 IKLNKLRTFPPSICEMRS-LKYLDAHFNELHGLPRAIGKLT--RLEVLNLSSNFNDLTELPETIG-------DLINLREL  342 (458)
Q Consensus       273 L~~n~l~~l~~~l~~l~~-L~~L~l~~n~l~~l~~~l~~l~--~L~~L~L~~n~~~~~~l~~~l~-------~l~~L~~L  342 (458)
                      +++|.++.+|..+..+++ |++|++++|.++.+|..+..++  +|++|++++|... ..+|..+.       .+++|+.|
T Consensus       360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L~~L  438 (636)
T 4eco_A          360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINVSSI  438 (636)
T ss_dssp             CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCEEEE
T ss_pred             CCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCCCEE
Confidence            888888888888888888 8888888888888877666544  7777777776322 23344444       55567777


Q ss_pred             eccCCCCCCCchh-hhCCCCCcEEECcCCCCCCCcHH
Q 012694          343 DLSNNQIRALPDT-FFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       343 ~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      ++++|+|+.+|.. +..+++|++|++++|.++..+..
T Consensus       439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            7777777766543 33466666666666666655443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=5.9e-25  Score=223.47  Aligned_cols=131  Identities=30%  Similarity=0.419  Sum_probs=81.6

Q ss_pred             CCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEcc
Q 012694          243 SLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLS  320 (458)
Q Consensus       243 ~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~  320 (458)
                      +|++|++++|.++.+....+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++++ +..+..+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            344444444444444444444566677777777766654 34566667777777777777664 3456667777777777


Q ss_pred             CCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcCCCCCCC
Q 012694          321 SNFNDLTEL-PETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       321 ~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      +|  .+..+ |..+..+++|++|++++|+|+.+|. .+..+++|++|++++|++++.
T Consensus       356 ~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          356 YN--HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             SS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CC--cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            76  34444 4556667777777777777776653 456677777777777777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-25  Score=230.53  Aligned_cols=218  Identities=22%  Similarity=0.255  Sum_probs=194.3

Q ss_pred             CCCceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694          148 SGVVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l  226 (458)
                      ..++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ ++.+++|++|++++|.++.++.    .++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            3568999999999999775 589999999999999999997765 9999999999999999988764    389999999


Q ss_pred             eCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc-CCcccc-CCCCCcEEEcccCCCCCc
Q 012694          227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT-FPPSIC-EMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       227 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~l~-~l~~L~~L~l~~n~l~~l  304 (458)
                      ++|.++.++.  ..+++|+.|++++|.++.++...+..+++|+.|++++|.++. .|..+. .+++|++|++++|.++++
T Consensus       107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            9999998754  357899999999999999877777789999999999999996 455565 789999999999999998


Q ss_pred             cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      +. ...+++|+.|+|++|  .+..+|..+..+++|+.|++++|.|+.+|..+..+++|+.|++++|++.+.
T Consensus       185 ~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          185 KG-QVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             EC-CCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             cc-cccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence            65 446999999999998  677888889999999999999999999999999999999999999999843

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.4e-25  Score=232.30  Aligned_cols=222  Identities=24%  Similarity=0.281  Sum_probs=189.6

Q ss_pred             ccCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCCc-hhhcCCCCcc
Q 012694          146 AESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLP-DSIGLLLNLK  222 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~  222 (458)
                      +..+++|+.|++++|.++.++. .|+.+++|++|++++|.++.+|.. |+++++|++|++++|.++.++ ..+.++++|+
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            3467899999999999998765 679999999999999999999865 699999999999999999874 5789999999


Q ss_pred             EEEeeCCCCCCCchhhcCCC----------------------------------------CCcEEEcCCCCCCcCCchhh
Q 012694          223 VLNVSGNKLNTLPESIARCS----------------------------------------SLVELDASFNNLVCLPTNIG  262 (458)
Q Consensus       223 ~L~l~~n~l~~l~~~l~~l~----------------------------------------~L~~L~l~~n~l~~l~~~~~  262 (458)
                      +|++++|.++.++  +..++                                        +|+.|++++|.++..  ..+
T Consensus       175 ~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l  250 (597)
T 3oja_B          175 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWL  250 (597)
T ss_dssp             EEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGG
T ss_pred             EEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhh
Confidence            9999999988663  22222                                        344445555555443  234


Q ss_pred             ccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCE
Q 012694          263 YGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRE  341 (458)
Q Consensus       263 ~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~  341 (458)
                      ..+++|+.|++++|.++.+ |..+..+++|++|++++|.++++|..+..+++|+.|+|++|  .+..+|..++.+++|+.
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~l~~L~~  328 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQPQFDRLEN  328 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGHHHHTTCSE
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC--CCCccCcccccCCCCCE
Confidence            5899999999999999965 67899999999999999999999988888999999999998  66789988999999999


Q ss_pred             EeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          342 LDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       342 L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      |++++|.|+.++  +..+++|+.|++++|++.+.
T Consensus       329 L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          329 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             EECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            999999999885  77889999999999998743

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=7.2e-25  Score=222.83  Aligned_cols=112  Identities=33%  Similarity=0.406  Sum_probs=87.6

Q ss_pred             CCCEEeccCCcCcc-CCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEe
Q 012694          267 NLERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELD  343 (458)
Q Consensus       267 ~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~  343 (458)
                      +|+.|++++|.++. .+..+..+++|++|++++|.++++ +..+..+++|++|++++|  .+..+ +..++.+++|++|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--FLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGGTTCTTCCEEE
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC--ccCCcChhHhcCcccCCEEE
Confidence            44455555555543 345577788899999999988886 457888899999999988  45555 56788899999999


Q ss_pred             ccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          344 LSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       344 L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                      +++|+|+.+ |..+..+++|++|++++|+++..+...+
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  391 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF  391 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence            999999977 6788999999999999999998776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=6e-25  Score=222.71  Aligned_cols=224  Identities=26%  Similarity=0.431  Sum_probs=200.7

Q ss_pred             eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCC
Q 012694          152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n  229 (458)
                      ...+++.+..++.+|..+.  ++++.|++++|.|+.++ ..|.++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            5689999999999998665  68999999999999886 67999999999999999999884 67899999999999999


Q ss_pred             CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC-CcCccCCc-cccCCCCCcEEEcccCCCCCccc
Q 012694          230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL-NKLRTFPP-SICEMRSLKYLDAHFNELHGLPR  306 (458)
Q Consensus       230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~  306 (458)
                      +++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++. .+.++++|++|++++|.++.+|.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  202 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN  202 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence            9998875 688999999999999999999998888999999999998 56666664 68889999999999999999985


Q ss_pred             cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          307 AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       307 ~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                       +..+++|++|+|++|  .+..+ |..+..+++|+.|++++|+|+.+ +..+..+++|++|+|++|+++..+...+
T Consensus       203 -~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          203 -LTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             -CTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             -cCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence             889999999999998  55666 66789999999999999999977 4678999999999999999998876554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=5.8e-25  Score=214.41  Aligned_cols=220  Identities=23%  Similarity=0.351  Sum_probs=193.9

Q ss_pred             ccCCCceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccE
Q 012694          146 AESGVVVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKV  223 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~  223 (458)
                      +..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+|..+.  ++|++|++++|.++.++. .+.++++|++
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            34678899999999999977 6689999999999999999999987655  899999999999999865 5899999999


Q ss_pred             EEeeCCCCCC---CchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccC
Q 012694          224 LNVSGNKLNT---LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFN  299 (458)
Q Consensus       224 L~l~~n~l~~---l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n  299 (458)
                      |++++|.++.   .+..+..+ +|++|++++|.++.++....   ++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus       152 L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             EECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred             EECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            9999999973   35667777 99999999999999987654   78999999999999776 67899999999999999


Q ss_pred             CCCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc-hhhhC------CCCCcEEECcCCC
Q 012694          300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFR------LENLTKLNLDQNP  371 (458)
Q Consensus       300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~------l~~L~~L~L~~n~  371 (458)
                      .+++++. .+..+++|++|++++|  .+..+|..+..+++|+.|++++|+|+.++ ..+..      .+.|+.|++++|+
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             cCCcCChhHhhCCCCCCEEECCCC--cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            9999764 7899999999999998  67799999999999999999999999885 34433      4679999999999


Q ss_pred             CC
Q 012694          372 LV  373 (458)
Q Consensus       372 i~  373 (458)
                      +.
T Consensus       306 ~~  307 (332)
T 2ft3_A          306 VP  307 (332)
T ss_dssp             SC
T ss_pred             cc
Confidence            87

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=5.2e-26  Score=219.97  Aligned_cols=219  Identities=22%  Similarity=0.251  Sum_probs=178.9

Q ss_pred             eeEEEecCCCCC--ccchhhC-------CCCCCcEEEcccCCCC-ccchhh--cCCcccceeeeecCCCCCCchhhcCC-
Q 012694          152 VETVDLADRQLK--LLPEAFG-------RLRGLVSLNLSRNLLE-AMPDSI--AGLQKLEELDVSSNLLQSLPDSIGLL-  218 (458)
Q Consensus       152 L~~L~l~~~~l~--~l~~~~~-------~l~~L~~L~l~~n~i~-~l~~~l--~~l~~L~~L~L~~n~l~~l~~~l~~l-  218 (458)
                      ++.|++++|.++  .+|..+.       .+++|++|++++|.++ .+|..+  ..+++|++|++++|.++.+|..+..+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            566677777664  3455444       6889999999999998 567665  88999999999999999887777766 


Q ss_pred             ----CCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcC---Cch-hhccCCCCCEEeccCCcCccCC---c-cc
Q 012694          219 ----LNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCL---PTN-IGYGLLNLERLSIKLNKLRTFP---P-SI  285 (458)
Q Consensus       219 ----~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l---~~~-~~~~l~~L~~L~L~~n~l~~l~---~-~l  285 (458)
                          ++|++|++++|+++.++ ..+..+++|++|++++|.+...   +.. .+..+++|++|++++|.++.++   . .+
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence                89999999999999776 6888999999999999987542   222 2357899999999999998543   2 23


Q ss_pred             cCCCCCcEEEcccCCCCCcc--ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCc
Q 012694          286 CEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLT  363 (458)
Q Consensus       286 ~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~  363 (458)
                      ..+++|++|++++|.+++.+  ..+..+++|++|++++|  .+..+|..+.  ++|++|++++|+|+.+|. +..+++|+
T Consensus       225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~  299 (312)
T 1wwl_A          225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT--GLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVG  299 (312)
T ss_dssp             HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS--CCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred             hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC--ccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence            57789999999999999854  45667899999999998  5668888776  899999999999999976 88999999


Q ss_pred             EEECcCCCCCCC
Q 012694          364 KLNLDQNPLVIP  375 (458)
Q Consensus       364 ~L~L~~n~i~~~  375 (458)
                      +|++++|++++.
T Consensus       300 ~L~L~~N~l~~~  311 (312)
T 1wwl_A          300 NLSLKGNPFLDS  311 (312)
T ss_dssp             EEECTTCTTTCC
T ss_pred             EEeccCCCCCCC
Confidence            999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=7.2e-25  Score=222.91  Aligned_cols=225  Identities=26%  Similarity=0.364  Sum_probs=200.1

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeC
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG  228 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~  228 (458)
                      ....+++++..++.+|..+.  +++++|++++|.|+.+ +..|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            35689999999999997665  6999999999999987 467999999999999999999874 6889999999999999


Q ss_pred             CCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC-CcCccCCc-cccCCCCCcEEEcccCCCCCcc
Q 012694          229 NKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL-NKLRTFPP-SICEMRSLKYLDAHFNELHGLP  305 (458)
Q Consensus       229 n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~  305 (458)
                      |+++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++. .+..+++|++|++++|.++++|
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            999988754 88899999999999999999998888999999999998 56777765 5888999999999999999997


Q ss_pred             ccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          306 RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       306 ~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                      . +..+++|++|+|++|  .+..+ |..+..+++|+.|++++|+|+.+ +..+..+++|++|+|++|+++..+...+
T Consensus       213 ~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          213 N-LTPLVGLEELEMSGN--HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             C-CTTCTTCCEEECTTS--CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             c-ccccccccEEECcCC--cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            5 889999999999998  55555 67789999999999999999977 5678999999999999999998876543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=6.8e-25  Score=224.54  Aligned_cols=228  Identities=27%  Similarity=0.377  Sum_probs=157.5

Q ss_pred             CceeEEEecCCCCCccc-hhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLLP-EAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l  226 (458)
                      +.++.|++++|.++.++ ..|..+++|++|++++|.++.+ |..|.++++|++|++++|.++.+|. .+.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46778888888887664 4677788888888888877766 5567788888888888888877764 4577788888888


Q ss_pred             eCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCc
Q 012694          227 SGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       227 ~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      ++|+++.+ +..+..+++|++|++++|.++.+....+.++++|+.|++++|.++.++. .+..+++|+.|++++|.+..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            88877754 4567777778888888877777766666677777777777777776654 466777777777777777665


Q ss_pred             c-ccccCCCcccEEEccCCC----------------------CCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCC
Q 012694          305 P-RAIGKLTRLEVLNLSSNF----------------------NDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRL  359 (458)
Q Consensus       305 ~-~~l~~l~~L~~L~L~~n~----------------------~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l  359 (458)
                      + ..+..+++|++|++++|.                      +.+..+| ..+..+++|+.|+|++|.|+.++ ..+..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            4 355566666666655541                      1334444 24566667777777777666553 346666


Q ss_pred             CCCcEEECcCCCCCCCcH
Q 012694          360 ENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       360 ~~L~~L~L~~n~i~~~~~  377 (458)
                      ++|++|+|++|.++....
T Consensus       272 ~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             TTCCEEECCSSCCSEECT
T ss_pred             ccCCEEECCCCccceECH
Confidence            777777777776665433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=7.9e-25  Score=207.73  Aligned_cols=219  Identities=27%  Similarity=0.342  Sum_probs=190.6

Q ss_pred             EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCC
Q 012694          154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKL  231 (458)
Q Consensus       154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l  231 (458)
                      .+++.+..+..+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.++.++. .+.++++|++|++++|++
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            56778888888887664  589999999999998875 78999999999999999998754 789999999999999999


Q ss_pred             CCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc--CCccccCCCCCcEEEcccCCCCCcc-cc
Q 012694          232 NTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT--FPPSICEMRSLKYLDAHFNELHGLP-RA  307 (458)
Q Consensus       232 ~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~l~-~~  307 (458)
                      +.++ ..+.++++|++|++++|.++.++...+..+++|++|++++|.++.  +|..+..+++|++|++++|.+++++ ..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            9775 578899999999999999999887667789999999999999986  6889999999999999999999975 45


Q ss_pred             ccCCCccc----EEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCc
Q 012694          308 IGKLTRLE----VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       308 l~~l~~L~----~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +..+++|+    .|++++|  .+..++.......+|+.|++++|+|+.+|. .+..+++|++|++++|++.+..
T Consensus       169 ~~~l~~L~~l~l~L~ls~n--~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLN--PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSS--CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             hhhhhhccccceeeecCCC--cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            66666666    8999998  667777766666799999999999999975 5688999999999999998653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=222.97  Aligned_cols=225  Identities=26%  Similarity=0.384  Sum_probs=127.3

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~  225 (458)
                      +++|++|++++|.++.+|. .|..+++|++|++++|.++.+ +..+.++++|++|++++|.++.+ +..+.++++|++|+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            4555555555555555544 345555555555555555544 23455555555555555555544 33455555566666


Q ss_pred             eeCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCC------------------------CCEEeccCCcCcc
Q 012694          226 VSGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLN------------------------LERLSIKLNKLRT  280 (458)
Q Consensus       226 l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~------------------------L~~L~L~~n~l~~  280 (458)
                      +++|+++.++. .+..+++|+.|++++|.+..++...+..+++                        |+.|++++|.++.
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            66555555542 3455555555555555555444433334443                        4444444455555


Q ss_pred             CC-ccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCch-hh
Q 012694          281 FP-PSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPD-TF  356 (458)
Q Consensus       281 l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l  356 (458)
                      ++ ..+..+++|++|++++|.+++++ ..+..+++|+.|+|++|  .+..+ |..+..+++|+.|++++|+|+.++. .+
T Consensus       239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG--QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS--CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC--ccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence            54 24555666666666666666644 34566666666666665  33333 4456667777777777777776653 45


Q ss_pred             hCCCCCcEEECcCCCCCCC
Q 012694          357 FRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       357 ~~l~~L~~L~L~~n~i~~~  375 (458)
                      ..+++|++|++++|++.+.
T Consensus       317 ~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          317 HSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCGGGCCEEECCSSCEECS
T ss_pred             CCCcccCEEEccCCCccCc
Confidence            6667777777777777654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=9.5e-25  Score=236.29  Aligned_cols=229  Identities=28%  Similarity=0.389  Sum_probs=195.0

Q ss_pred             CCceeEEEecCCCCC-ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~  225 (458)
                      .++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            457888888888887 67788899999999999999887 66788999999999999999988 5688899999999999


Q ss_pred             eeCCCCC-CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEcccCCCCC
Q 012694          226 VSGNKLN-TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       226 l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~~  303 (458)
                      +++|+++ .+|..+.++++|++|++++|.++......+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            9999988 67888999999999999999998544444458999999999999998 788889999999999999998764


Q ss_pred             -cccc----------------------------------------------------------------------ccCCC
Q 012694          304 -LPRA----------------------------------------------------------------------IGKLT  312 (458)
Q Consensus       304 -l~~~----------------------------------------------------------------------l~~l~  312 (458)
                       +|..                                                                      ++.++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence             4432                                                                      33456


Q ss_pred             cccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          313 RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       313 ~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      +|+.|++++|.. .+.+|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|++++..+.
T Consensus       633 ~L~~LdLs~N~l-~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          633 SMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             CCCEEECCSSCC-BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             cccEEECcCCcc-cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence            789999999832 3578999999999999999999998 7799999999999999999999865443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=3.8e-24  Score=217.65  Aligned_cols=208  Identities=25%  Similarity=0.336  Sum_probs=158.1

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      +++|++|++++|.++.+| .+..+++|++|++++|.++.++  ++.+++|++|++++|.++.++  ++++++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            366888888888888776 5778888888888888888775  778888888888888888774  77788888888888


Q ss_pred             CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCC-cCccCCccccCCCCCcEEEcccCCCCCcccc
Q 012694          229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN-KLRTFPPSICEMRSLKYLDAHFNELHGLPRA  307 (458)
Q Consensus       229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~  307 (458)
                      |+++.++  ++.+++|++|++++|.++.++   ...+++|+.|++++| .+..+  .+..+++|++|++++|.++++|  
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--  186 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--  186 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--
T ss_pred             CcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--
Confidence            8888774  777888888888888888764   336777888888877 44444  4667777888888888877775  


Q ss_pred             ccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694          308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       308 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +..+++|+.|++++|  .+..+  .++.+++|+.|++++|+++.+|  +..+++|++|++++|+++..+
T Consensus       187 l~~l~~L~~L~l~~N--~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTN--NITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CTTCTTCCEEECCSS--CCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             cccCCCCCEEECcCC--cCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            667777888888776  44454  2667777777788777777776  667777777777777777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=4.7e-25  Score=216.89  Aligned_cols=228  Identities=20%  Similarity=0.230  Sum_probs=198.6

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEe
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNV  226 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l  226 (458)
                      ++.....+++++.++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.++.+ +..+.++++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3444558999999999998665  599999999999998875 799999999999999999987 467999999999999


Q ss_pred             eCCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCC-cCccC-CccccCCCCCcEEEcccCCCC
Q 012694          227 SGNKLNTLPES-IARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLN-KLRTF-PPSICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       227 ~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~L~l~~n~l~  302 (458)
                      ++|+++.++.. +.++++|++|++++|.++.++. ..+..+++|++|++++| .++.+ +..+..+++|++|++++|.++
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            99999999866 8899999999999999999987 66778999999999999 57766 457889999999999999999


Q ss_pred             Cc-cccccCCCcccEEEccCCCCCCCccchhh-cCCCCCCEEeccCCCCCCC----------------------------
Q 012694          303 GL-PRAIGKLTRLEVLNLSSNFNDLTELPETI-GDLINLRELDLSNNQIRAL----------------------------  352 (458)
Q Consensus       303 ~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l-~~l~~L~~L~L~~n~l~~l----------------------------  352 (458)
                      ++ |..+..+++|++|++++|  .+..+|..+ ..+++|+.|++++|+++.+                            
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMK--QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECS--CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             ccCHHHHhccccCCeecCCCC--ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            95 678999999999999998  567777654 4589999999999998863                            


Q ss_pred             ----chhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          353 ----PDTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       353 ----~~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                          |..+..+++|++|++++|+++..+..++
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~  297 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIF  297 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence                4457889999999999999998876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=7.3e-24  Score=216.32  Aligned_cols=220  Identities=25%  Similarity=0.347  Sum_probs=124.3

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      +++|++|++++|.++.++. +..+++|++|++++|.++.++. ++++++|++|++++|.++.++. +.++++|++|++++
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  143 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS  143 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence            4555666666665555544 5555555555555555555544 5555555555555555555433 44455555555554


Q ss_pred             CCCCCCch--------------------hhcCCCCCcEEEcCCCCCCcCCchh--------------------hccCCCC
Q 012694          229 NKLNTLPE--------------------SIARCSSLVELDASFNNLVCLPTNI--------------------GYGLLNL  268 (458)
Q Consensus       229 n~l~~l~~--------------------~l~~l~~L~~L~l~~n~l~~l~~~~--------------------~~~l~~L  268 (458)
                      |.++.++.                    .+.++++|++|++++|.++.++...                    ...+++|
T Consensus       144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L  223 (466)
T 1o6v_A          144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL  223 (466)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTC
T ss_pred             CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCC
Confidence            44433221                    1333444444555544444432100                    2234555


Q ss_pred             CEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCC
Q 012694          269 ERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQ  348 (458)
Q Consensus       269 ~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~  348 (458)
                      +.|++++|.++.+ ..+..+++|++|++++|.+++++. +..+++|++|++++|  .+..++. +..+++|+.|++++|+
T Consensus       224 ~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          224 DELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN--QISNISP-LAGLTALTNLELNENQ  298 (466)
T ss_dssp             CEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSSC
T ss_pred             CEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC--ccCcccc-ccCCCccCeEEcCCCc
Confidence            5555555555544 245556666666666666666544 566667777777766  4455544 6677777777777777


Q ss_pred             CCCCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694          349 IRALPDTFFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       349 l~~l~~~l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                      ++.++. +..+++|+.|++++|++++.+.
T Consensus       299 l~~~~~-~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          299 LEDISP-ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred             ccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence            777654 6777888888888887776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=5.8e-25  Score=209.68  Aligned_cols=225  Identities=28%  Similarity=0.323  Sum_probs=191.4

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCC-CCCC-chhhcCCCCccEE
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNL-LQSL-PDSIGLLLNLKVL  224 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~-l~~l-~~~l~~l~~L~~L  224 (458)
                      .+++++|++++|.++.++. .|..+++|++|++++|.++.+ +..+.++++|++|++++|. ++.+ +..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4679999999999998874 789999999999999999987 5679999999999999997 8888 6788999999999


Q ss_pred             EeeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCC
Q 012694          225 NVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       225 ~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~  302 (458)
                      ++++|.++.+ +..+.++++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            9999999977 5678889999999999999999998877789999999999999998876 4888999999999999999


Q ss_pred             Cc-cccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          303 GL-PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       303 ~l-~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      ++ |..+..+++|+.|++++|  .+..++ ..+..+++|+.|++++|.+........-...++.+..+.+.+.+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             ccCHhHccCcccccEeeCCCC--cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence            96 678999999999999998  566676 458999999999999999874422111112234444556666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=2.2e-24  Score=208.15  Aligned_cols=193  Identities=23%  Similarity=0.370  Sum_probs=127.0

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ++|++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence            45777777777777665 46667777777777777776655 677777777777777777664 4666777777777777


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      +++.++. +..+++|++|++++|.++.++.  +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++. +.
T Consensus       118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~  192 (308)
T 1h6u_A          118 QITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LA  192 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             CCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hc
Confidence            7766643 6666777777777777666654  3356666666666666666544 6666666666666666666654 56


Q ss_pred             CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694          310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP  353 (458)
Q Consensus       310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~  353 (458)
                      .+++|++|++++|  .+..++ .+..+++|+.|++++|.++..|
T Consensus       193 ~l~~L~~L~L~~N--~l~~~~-~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          193 SLPNLIEVHLKNN--QISDVS-PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             GCTTCCEEECTTS--CCCBCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred             CCCCCCEEEccCC--ccCccc-cccCCCCCCEEEccCCeeecCC
Confidence            6666666666665  444554 2566666666666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=3.3e-24  Score=225.94  Aligned_cols=229  Identities=24%  Similarity=0.275  Sum_probs=140.9

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCC-CCch-hhcCCCCccEE
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQ-SLPD-SIGLLLNLKVL  224 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~-~l~~-~l~~l~~L~~L  224 (458)
                      .+++|++|++++|.++.+|..+..+++|++|++++|.++.+ +..+.++++|++|++++|.+. .++. .+..+++|++|
T Consensus       276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            45677788888887777777777777888888887777765 345667777777777777655 4433 36667777777


Q ss_pred             EeeCCCCCCC---chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-C-ccccCCCCCcEEEcccC
Q 012694          225 NVSGNKLNTL---PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-P-PSICEMRSLKYLDAHFN  299 (458)
Q Consensus       225 ~l~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~-~~l~~l~~L~~L~l~~n  299 (458)
                      ++++|.++.+   +..+..+++|++|++++|.+..++...+..+++|+.|++++|.++.. + ..+..+++|++|++++|
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            7777776644   44566677777777777776666555555666677777766666533 2 23556666666666666


Q ss_pred             CCCCc-cccccCCCcccEEEccCCCCCCCcc--chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCC
Q 012694          300 ELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL--PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       300 ~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+++. +..+..+++|++|++++|......+  +..+..+++|+.|++++|+++.+ |..+..+++|++|++++|+++..
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  515 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS  515 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence            66553 3455566666666666652211111  12345555555555555555544 34455555555555555555544


Q ss_pred             c
Q 012694          376 P  376 (458)
Q Consensus       376 ~  376 (458)
                      +
T Consensus       516 ~  516 (606)
T 3t6q_A          516 S  516 (606)
T ss_dssp             G
T ss_pred             C
Confidence            3

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1.9e-24  Score=227.70  Aligned_cols=228  Identities=25%  Similarity=0.276  Sum_probs=151.8

Q ss_pred             ccCCCceeEEEecCCCCCccch--------------------hhCCCCCCcEEEcccCCCCcc---chhhcCCcccceee
Q 012694          146 AESGVVVETVDLADRQLKLLPE--------------------AFGRLRGLVSLNLSRNLLEAM---PDSIAGLQKLEELD  202 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~--------------------~~~~l~~L~~L~l~~n~i~~l---~~~l~~l~~L~~L~  202 (458)
                      +...++|++|++++|.+..+|.                    .+..+++|++|++++|.++.+   +..+..+++|++|+
T Consensus       303 l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  382 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD  382 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred             ccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence            3445677777777777766662                    233444555555555555543   45566666667777


Q ss_pred             eecCCCCCCchhhcCCCCccEEEeeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc
Q 012694          203 VSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT  280 (458)
Q Consensus       203 L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  280 (458)
                      +++|.++.+|..+..+++|++|++++|+++.++  ..+..+++|++|++++|.++......+..+++|++|++++|.++.
T Consensus       383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  462 (606)
T 3vq2_A          383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD  462 (606)
T ss_dssp             CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence            766666666666666777777777777666543  356667777777777777766555555567777777777777764


Q ss_pred             --CCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCchhh
Q 012694          281 --FPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPDTF  356 (458)
Q Consensus       281 --l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l  356 (458)
                        +|..+..+++|++|++++|.++++ |..+..+++|++|++++|  .+..+ |..++.+++|+.|++++|+|+.+|..+
T Consensus       463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~  540 (606)
T 3vq2_A          463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN--NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL  540 (606)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG
T ss_pred             cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC--cCCCcCHHHccCCCcCCEEECCCCcCcccCHhH
Confidence              566677777777777777777774 356777777777777776  34444 566777777777777777777777667


Q ss_pred             hCCC-CCcEEECcCCCCCCC
Q 012694          357 FRLE-NLTKLNLDQNPLVIP  375 (458)
Q Consensus       357 ~~l~-~L~~L~L~~n~i~~~  375 (458)
                      ..++ +|++|++++|++.+.
T Consensus       541 ~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             GGSCTTCCEEECCSCCCCCS
T ss_pred             hhhcccCcEEEccCCCcccC
Confidence            7765 477777777777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2.5e-23  Score=212.41  Aligned_cols=218  Identities=25%  Similarity=0.335  Sum_probs=163.0

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch--------------------hhcCCcccceeeeecCC
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD--------------------SIAGLQKLEELDVSSNL  207 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~--------------------~l~~l~~L~~L~L~~n~  207 (458)
                      .+++|++|++++|.++.++. +..+++|++|++++|.++.++.                    .+.++++|++|++++|.
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  188 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence            44555555555555555543 5555666666665555544321                    13344555555555555


Q ss_pred             CCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccC
Q 012694          208 LQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE  287 (458)
Q Consensus       208 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~  287 (458)
                      ++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++  .+..+++|+.|++++|.++.++. +..
T Consensus       189 l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~  263 (466)
T 1o6v_A          189 VSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP-LSG  263 (466)
T ss_dssp             CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred             CCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchh-hhc
Confidence            55553 35566667777777776665543 666788888888888887764  34479999999999999998865 889


Q ss_pred             CCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEEC
Q 012694          288 MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL  367 (458)
Q Consensus       288 l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L  367 (458)
                      +++|++|++++|.+++++. +..+++|++|++++|  .+..++. ++.+++|+.|++++|+++.++. +..+++|++|++
T Consensus       264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l  338 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP-LAGLTALTNLELNEN--QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF  338 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS--CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC--cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence            9999999999999999877 889999999999998  5667655 7899999999999999998865 889999999999


Q ss_pred             cCCCCCCCc
Q 012694          368 DQNPLVIPP  376 (458)
Q Consensus       368 ~~n~i~~~~  376 (458)
                      ++|++++.+
T Consensus       339 ~~n~l~~~~  347 (466)
T 1o6v_A          339 YNNKVSDVS  347 (466)
T ss_dssp             CSSCCCCCG
T ss_pred             CCCccCCch
Confidence            999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=8.1e-24  Score=202.36  Aligned_cols=199  Identities=29%  Similarity=0.388  Sum_probs=121.9

Q ss_pred             CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEc
Q 012694          171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDA  249 (458)
Q Consensus       171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l  249 (458)
                      .+++++.++++++.++.+|..+.  +++++|++++|.++.+ +..+.++++|++|++++|.++.++.. ..+++|++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence            33444444444444444443322  3444444444444443 23344444444444444444444322 34445555555


Q ss_pred             CCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCC
Q 012694          250 SFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLT  327 (458)
Q Consensus       250 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~  327 (458)
                      ++|.++.++..+. .+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|  .+.
T Consensus        85 s~N~l~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~  161 (290)
T 1p9a_G           85 SHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN--NLT  161 (290)
T ss_dssp             CSSCCSSCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCS
T ss_pred             CCCcCCcCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC--cCC
Confidence            5555554443222 4555555555555555554 345666777777777777777653 4567788888888887  566


Q ss_pred             ccchh-hcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          328 ELPET-IGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       328 ~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+|.. +..+++|+.|++++|+|+.+|..+..+++|+.|++++|++.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            67654 4678899999999999999998888889999999999999865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=4e-24  Score=225.31  Aligned_cols=221  Identities=20%  Similarity=0.270  Sum_probs=134.2

Q ss_pred             ceeEEEecCCCCCcc-chhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEee
Q 012694          151 VVETVDLADRQLKLL-PEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVS  227 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~  227 (458)
                      .+++|++++|.++.+ |..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++.+ |..++++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            467777777777655 34666777777777777766655 45566777777777777766655 4566667777777777


Q ss_pred             CCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCc--EEEcccCCCC-
Q 012694          228 GNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLK--YLDAHFNELH-  302 (458)
Q Consensus       228 ~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~--~L~l~~n~l~-  302 (458)
                      +|+++.+ +..+.++++|++|++++|.++.++...+..+++|+.|++++|.++.+ +..+..+++|+  +|++++|.++ 
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            7766665 34566666666666666666665432222466666666666666644 23344555555  4555555444 


Q ss_pred             --------------------------------------------------------------------------Cccc-c
Q 012694          303 --------------------------------------------------------------------------GLPR-A  307 (458)
Q Consensus       303 --------------------------------------------------------------------------~l~~-~  307 (458)
                                                                                                +++. .
T Consensus       194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~  273 (606)
T 3t6q_A          194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT  273 (606)
T ss_dssp             ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred             cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence                                                                                      4332 2


Q ss_pred             ccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCC
Q 012694          308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       308 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      +..+++|++|++++|  .+..+|..++.+++|++|++++|+++.+ |..+..+++|++|++++|.+.
T Consensus       274 ~~~l~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          274 FHCFSGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             TTTCTTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             hccccCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence            555566666666665  4445665566666666666666666655 345566666666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=217.25  Aligned_cols=113  Identities=24%  Similarity=0.330  Sum_probs=62.5

Q ss_pred             cCCCCCEEeccCCcCcc-CCccccCCCCCcEEEcccCCCCCc---cccccCCCcccEEEccCCCCCCCc-cchh-hc---
Q 012694          264 GLLNLERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNELHGL---PRAIGKLTRLEVLNLSSNFNDLTE-LPET-IG---  334 (458)
Q Consensus       264 ~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l---~~~l~~l~~L~~L~L~~n~~~~~~-l~~~-l~---  334 (458)
                      .+++|++|++++|.++. +|..+..+++|++|++++|.++++   |..+..+++|++|++++|  .+.. +|.. +.   
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N--~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN--SVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS--CCBCCGGGCSCCCCT
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC--cCCcccccchhccCc
Confidence            34455555555555553 344445555555555555555432   233444445555555444  1222 2211 11   


Q ss_pred             ------------------CC-CCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          335 ------------------DL-INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       335 ------------------~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                                        .+ ++|+.|++++|+|+.+|..+..+++|++|++++|+++..+..
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence                              11 567777777777777777677778888888888887776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.4e-23  Score=196.96  Aligned_cols=199  Identities=36%  Similarity=0.552  Sum_probs=148.4

Q ss_pred             CCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcCC
Q 012694          174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASF  251 (458)
Q Consensus       174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~  251 (458)
                      +.++++++++.++.+|..+.  +++++|++++|.++.++. .+.++++|++|++++|.++.++.. +..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            45566666666666665433  456667777776666643 566677777777777777766544 35677777777777


Q ss_pred             CCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCCcc
Q 012694          252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL  329 (458)
Q Consensus       252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l  329 (458)
                      |.++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+++++. .+..+++|++|++++|  .+..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~  172 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN--QLKRV  172 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCSCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC--cCcEe
Confidence            77777776666677778888888887776654 46778888888888888888765 4788889999999987  56666


Q ss_pred             ch-hhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCc
Q 012694          330 PE-TIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       330 ~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +. .+..+++|+.|++++|+|+.+|. .+..+++|+.|++++|++.+..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            54 47888999999999999998864 5888999999999999997653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.1e-23  Score=215.80  Aligned_cols=135  Identities=30%  Similarity=0.416  Sum_probs=91.5

Q ss_pred             cCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc---CCccccCCCCCcEEEcccCCCCC-cccc-ccCC--
Q 012694          239 ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT---FPPSICEMRSLKYLDAHFNELHG-LPRA-IGKL--  311 (458)
Q Consensus       239 ~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l~~l~~L~~L~l~~n~l~~-l~~~-l~~l--  311 (458)
                      ..+++|++|++++|.++......+..+++|+.|++++|.++.   +|..+..+++|++|++++|.+++ +|.. +..+  
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            345556666666666555332333355566666666665553   22345555555555555555555 4431 2222  


Q ss_pred             --------------------CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchh-hhCCCCCcEEECcCC
Q 012694          312 --------------------TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT-FFRLENLTKLNLDQN  370 (458)
Q Consensus       312 --------------------~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n  370 (458)
                                          ++|++|++++|  .+..+|..+..+++|++|++++|+|+.+|.. +..+++|++|++++|
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSS--CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCC--cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence                                56777777776  5668888888999999999999999999875 889999999999999


Q ss_pred             CCCCC
Q 012694          371 PLVIP  375 (458)
Q Consensus       371 ~i~~~  375 (458)
                      ++.+.
T Consensus       479 ~~~c~  483 (520)
T 2z7x_B          479 PWDCS  483 (520)
T ss_dssp             CBCCC
T ss_pred             CCccc
Confidence            99865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=1.3e-23  Score=202.82  Aligned_cols=211  Identities=23%  Similarity=0.358  Sum_probs=186.3

Q ss_pred             ecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCch
Q 012694          157 LADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE  236 (458)
Q Consensus       157 l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~  236 (458)
                      +..+.+.... .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|+++.++ 
T Consensus        26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-  101 (308)
T 1h6u_A           26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-  101 (308)
T ss_dssp             TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred             hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence            3444454432 2345789999999999999986 68999999999999999999977 999999999999999999885 


Q ss_pred             hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccE
Q 012694          237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEV  316 (458)
Q Consensus       237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~  316 (458)
                      .+..+++|++|++++|.++.++.  +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++. +..+++|+.
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  177 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT  177 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence            68999999999999999999875  5589999999999999998865 8899999999999999999877 899999999


Q ss_pred             EEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHHH
Q 012694          317 LNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEI  379 (458)
Q Consensus       317 L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~  379 (458)
                      |++++|  .+..++. +..+++|+.|++++|+|+.++ .+..+++|+.|++++|+++..+...
T Consensus       178 L~l~~n--~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          178 LKADDN--KISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             EECCSS--CCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             EECCCC--ccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCeee
Confidence            999998  6677765 889999999999999999987 4899999999999999998876543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2e-23  Score=199.62  Aligned_cols=200  Identities=30%  Similarity=0.353  Sum_probs=182.1

Q ss_pred             cCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          147 ESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       147 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      ...+++++++++++.++.+|..+.  +++++|++++|.++.++ ..+.++++|++|++++|.++.++.. ..+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            456789999999999999997664  69999999999999875 5799999999999999999998664 7899999999


Q ss_pred             eeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCc
Q 012694          226 VSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       226 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l  304 (458)
                      +++|+++.+|..+..+++|++|++++|.++.++...+.++++|+.|++++|.++.++.. +..+++|+.|++++|+++.+
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            99999999999999999999999999999999988888999999999999999988754 57899999999999999998


Q ss_pred             cc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC
Q 012694          305 PR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA  351 (458)
Q Consensus       305 ~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~  351 (458)
                      |. .+..+++|++|++++|  .+..+|..+....+|+.|++++|.+..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N--~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CHHHhcCcCCCCEEECCCC--cCCccChhhcccccCCeEEeCCCCccC
Confidence            85 5688999999999998  677999999899999999999998774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=3.1e-23  Score=217.61  Aligned_cols=209  Identities=33%  Similarity=0.364  Sum_probs=136.9

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ++|+.|++++|.++.+|.   .+++|++|++++|+|+.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            567888888888877765   46777888888887777765   56677777777777766654   3444555555555


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhh----------------ccCCCCCEEeccCCcCccCCcccc-------
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIG----------------YGLLNLERLSIKLNKLRTFPPSIC-------  286 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~----------------~~l~~L~~L~L~~n~l~~l~~~l~-------  286 (458)
                      +++.+|..   +++|++|++++|.++.++....                ..+++|+.|++++|.++.+|..+.       
T Consensus       132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L  208 (622)
T 3g06_A          132 QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWA  208 (622)
T ss_dssp             CCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             CCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEEC
Confidence            54444432   2344444444444433322100                122455555555555554433211       


Q ss_pred             ----------CCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh
Q 012694          287 ----------EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF  356 (458)
Q Consensus       287 ----------~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l  356 (458)
                                .+++|++|++++|.++++|   ..+++|+.|++++|  .+..+|.   .+++|+.|+|++|+|+.+|..+
T Consensus       209 ~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N--~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l  280 (622)
T 3g06_A          209 YNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPM---LPSGLLSLSVYRNQLTRLPESL  280 (622)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred             cCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC--CCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence                      1256777777777777776   35578888888887  5667776   5688999999999999999899


Q ss_pred             hCCCCCcEEECcCCCCCCCcHH
Q 012694          357 FRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       357 ~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      .++++|+.|+|++|++++..+.
T Consensus       281 ~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GGSCTTCEEECCSCCCCHHHHH
T ss_pred             hhccccCEEEecCCCCCCcCHH
Confidence            9999999999999999855443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=5.8e-23  Score=214.62  Aligned_cols=113  Identities=24%  Similarity=0.278  Sum_probs=65.3

Q ss_pred             cCCCCCEEeccCCcCcc-CCccccCCCCCcEEEcccCCCCCcc---ccccCCCcccEEEccCCCCCCCc-cch-------
Q 012694          264 GLLNLERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNELHGLP---RAIGKLTRLEVLNLSSNFNDLTE-LPE-------  331 (458)
Q Consensus       264 ~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~L~~n~~~~~~-l~~-------  331 (458)
                      .+++|++|++++|.++. +|..+..+++|++|++++|.+++++   ..+..+++|++|++++|.  +.. +|.       
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~l~  428 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS--LNSHAYDRTCAWAE  428 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC--CBSCCSSCCCCCCT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc--CCCccChhhhcCcc
Confidence            34455555555555553 3444555555555555555555432   234455555555555542  111 221       


Q ss_pred             ---------------hhcCC-CCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          332 ---------------TIGDL-INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       332 ---------------~l~~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                                     .+..+ ++|+.|++++|+|+.+|..+..+++|++|++++|+++..|..
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence                           11122 577788888888887877777888888888888888876654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=6.8e-23  Score=208.38  Aligned_cols=208  Identities=25%  Similarity=0.301  Sum_probs=166.0

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      +..+++|++|++++|.++.++  ++.+++|++|++++|.++.++  ++++++|++|++++|.++.++  ++.+++|++|+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~  133 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN  133 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence            445688999999999999885  888999999999999999885  889999999999999999885  88899999999


Q ss_pred             eeCCCCCCCchhhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694          226 VSGNKLNTLPESIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       226 l~~n~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      +++|+++.++  ++.+++|++|++++| .++.++   +..+++|+.|++++|.++.++  +..+++|+.|++++|.++++
T Consensus       134 l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          134 CARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             CTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred             CCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee
Confidence            9999998873  778888899998888 455552   336788888888888888876  77788888888888888887


Q ss_pred             cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCC
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      +  ++.+++|++|++++|  .+..+|  ++.+++|+.|++++|+++.+|  ++.+++|+.|++++|.+..
T Consensus       207 ~--l~~l~~L~~L~Ls~N--~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~  268 (457)
T 3bz5_A          207 D--LNQNIQLTFLDCSSN--KLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLE  268 (457)
T ss_dssp             C--CTTCTTCSEEECCSS--CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSC
T ss_pred             c--cccCCCCCEEECcCC--cccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCE
Confidence            3  777888888888887  556665  677888888888888888775  3445555555555554443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=5.4e-23  Score=214.80  Aligned_cols=134  Identities=28%  Similarity=0.357  Sum_probs=90.6

Q ss_pred             CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC---ccccCCCCCcEEEcccCCCCC-cccc-ccC----
Q 012694          240 RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP---PSICEMRSLKYLDAHFNELHG-LPRA-IGK----  310 (458)
Q Consensus       240 ~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~-l~~~-l~~----  310 (458)
                      .+++|++|++++|.++......+..+++|+.|++++|.++.++   ..+..+++|++|++++|.+++ +|.. +..    
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            4455556666666555433333335555555555555555433   234555555555555555554 3321 222    


Q ss_pred             -----------------C-CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchh-hhCCCCCcEEECcCCC
Q 012694          311 -----------------L-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT-FFRLENLTKLNLDQNP  371 (458)
Q Consensus       311 -----------------l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~  371 (458)
                                       + ++|++|++++|  .+..+|..+..+++|+.|++++|+|+.+|.. +..+++|+.|++++|+
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNN--RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSS--CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCC--cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence                             2 57788888877  6678888888999999999999999999876 8999999999999999


Q ss_pred             CCCC
Q 012694          372 LVIP  375 (458)
Q Consensus       372 i~~~  375 (458)
                      +.+.
T Consensus       509 ~~c~  512 (562)
T 3a79_B          509 WDCT  512 (562)
T ss_dssp             BCCC
T ss_pred             cCCC
Confidence            9864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=8.3e-24  Score=222.87  Aligned_cols=230  Identities=23%  Similarity=0.198  Sum_probs=181.3

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh--------------------hcCCcccceeeeec
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--------------------IAGLQKLEELDVSS  205 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~--------------------l~~l~~L~~L~L~~  205 (458)
                      +...++|+.|+++++.+..+| .+..+++|++|++++|.++.+|..                    +..+++|++|++++
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~  359 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR  359 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred             cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence            455788999999999999998 888999999999999998877731                    22344455555555


Q ss_pred             CCCCCC---chhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCcc-
Q 012694          206 NLLQSL---PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLRT-  280 (458)
Q Consensus       206 n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~-  280 (458)
                      |.++.+   +..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.++. 
T Consensus       360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (606)
T 3vq2_A          360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID  439 (606)
T ss_dssp             SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence            555443   556677777888888877777777777778888888888888776655 455678888888888888874 


Q ss_pred             CCccccCCCCCcEEEcccCCCCC--ccccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhh
Q 012694          281 FPPSICEMRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTF  356 (458)
Q Consensus       281 l~~~l~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l  356 (458)
                      .|..+..+++|++|++++|.+++  +|..++.+++|++|++++|  .+..+ |..++.+++|++|++++|+++.+ |..+
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  517 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC--QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY  517 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC--cCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence            55678888899999999998887  5778888999999999988  44444 56688899999999999999877 6788


Q ss_pred             hCCCCCcEEECcCCCCCCCcHH
Q 012694          357 FRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       357 ~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      ..+++|++|++++|+++..|..
T Consensus       518 ~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          518 NQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCEESC
T ss_pred             cCCCcCCEEECCCCcCcccCHh
Confidence            8899999999999999876654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.3e-23  Score=203.19  Aligned_cols=200  Identities=21%  Similarity=0.245  Sum_probs=174.6

Q ss_pred             CCCceeEEEecCCCCC-ccchhh--CCCCCCcEEEcccCCCCccchhhcCC-----cccceeeeecCCCCCCc-hhhcCC
Q 012694          148 SGVVVETVDLADRQLK-LLPEAF--GRLRGLVSLNLSRNLLEAMPDSIAGL-----QKLEELDVSSNLLQSLP-DSIGLL  218 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~n~i~~l~~~l~~l-----~~L~~L~L~~n~l~~l~-~~l~~l  218 (458)
                      ..++|++|++++|.++ .+|..+  ..+++|++|++++|.++.+|..++.+     ++|++|++++|.++.++ ..++++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5689999999999998 677765  89999999999999999888777777     89999999999999886 789999


Q ss_pred             CCccEEEeeCCCCCC---Cchhh--cCCCCCcEEEcCCCCCCcC---CchhhccCCCCCEEeccCCcCccCC--ccccCC
Q 012694          219 LNLKVLNVSGNKLNT---LPESI--ARCSSLVELDASFNNLVCL---PTNIGYGLLNLERLSIKLNKLRTFP--PSICEM  288 (458)
Q Consensus       219 ~~L~~L~l~~n~l~~---l~~~l--~~l~~L~~L~l~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l  288 (458)
                      ++|++|++++|++..   ++..+  ..+++|++|++++|.++.+   +...+..+++|+.|++++|.++..+  ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            999999999999763   34445  7899999999999999944   4455567899999999999999754  456678


Q ss_pred             CCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC
Q 012694          289 RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL  352 (458)
Q Consensus       289 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l  352 (458)
                      ++|++|++++|.++.+|..+.  ++|++|++++|  .+..+|. +..+++|++|++++|.|+..
T Consensus       253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N--~l~~~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN--RLDRNPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS--CCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCCCEEECCCCccChhhhhcc--CCceEEECCCC--CCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence            999999999999999998776  89999999998  6677776 88999999999999998853

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=2.4e-24  Score=214.50  Aligned_cols=246  Identities=18%  Similarity=0.204  Sum_probs=195.8

Q ss_pred             HHHHHHhccCCCceeEEEecCCCCCc-----cchhhCCCCCCcEEEcccCCCCc----cchh-------hcCCcccceee
Q 012694          139 VVKILQEAESGVVVETVDLADRQLKL-----LPEAFGRLRGLVSLNLSRNLLEA----MPDS-------IAGLQKLEELD  202 (458)
Q Consensus       139 ~~~~l~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~i~~----l~~~-------l~~l~~L~~L~  202 (458)
                      +..+...+..+++|++|++++|.++.     ++..+..+++|++|++++|.+..    +|..       +..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            33344455567889999999999884     44457889999999999986653    3433       47899999999


Q ss_pred             eecCCCCC-----CchhhcCCCCccEEEeeCCCCCC-----CchhhcCC---------CCCcEEEcCCCCCC--cCCc--
Q 012694          203 VSSNLLQS-----LPDSIGLLLNLKVLNVSGNKLNT-----LPESIARC---------SSLVELDASFNNLV--CLPT--  259 (458)
Q Consensus       203 L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l---------~~L~~L~l~~n~l~--~l~~--  259 (458)
                      +++|.++.     ++..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|.++  .++.  
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99999986     67788999999999999999873     33444445         89999999999997  3332  


Q ss_pred             hhhccCCCCCEEeccCCcCc------cCCccccCCCCCcEEEcccCCCC-----CccccccCCCcccEEEccCCCCCCCc
Q 012694          260 NIGYGLLNLERLSIKLNKLR------TFPPSICEMRSLKYLDAHFNELH-----GLPRAIGKLTRLEVLNLSSNFNDLTE  328 (458)
Q Consensus       260 ~~~~~l~~L~~L~L~~n~l~------~l~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~L~~n~~~~~~  328 (458)
                      ..+..+++|++|++++|.++      .++..+..+++|++|++++|.++     .++..+..+++|++|+|++|  .+..
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~  258 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSA  258 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCch
Confidence            23447899999999999998      23337889999999999999994     47888999999999999998  3443


Q ss_pred             -----cchhh--cCCCCCCEEeccCCCCCC-----Cchhh-hCCCCCcEEECcCCCCCCCcH--HHHhhcHHH
Q 012694          329 -----LPETI--GDLINLRELDLSNNQIRA-----LPDTF-FRLENLTKLNLDQNPLVIPPM--EIVNKGVEA  386 (458)
Q Consensus       329 -----l~~~l--~~l~~L~~L~L~~n~l~~-----l~~~l-~~l~~L~~L~L~~n~i~~~~~--~~~~~~~~~  386 (458)
                           ++..+  +.+++|+.|+|++|.|+.     +|..+ .++++|++|++++|+++....  ..+...++.
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~  331 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST  331 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence                 35666  348999999999999997     78777 668999999999999998773  444443433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=219.19  Aligned_cols=225  Identities=27%  Similarity=0.301  Sum_probs=173.3

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh--------------------hcCCcccceeeeecCC
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--------------------IAGLQKLEELDVSSNL  207 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~--------------------l~~l~~L~~L~L~~n~  207 (458)
                      ..++|+.|++++|.+..+|..+..+ +|++|++++|.++.+|..                    ...+++|++|++++|.
T Consensus       280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            3577888888888888888777777 888888888877766531                    1456677777777777


Q ss_pred             CCCC---chhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCcc-CC
Q 012694          208 LQSL---PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLRT-FP  282 (458)
Q Consensus       208 l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~-l~  282 (458)
                      ++.+   +..+..+++|++|++++|.++.++..+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.. .+
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  438 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  438 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred             cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence            7654   466777888888888888887776667788888888888888776543 455578888888888888874 45


Q ss_pred             ccccCCCCCcEEEcccCCCC--CccccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhC
Q 012694          283 PSICEMRSLKYLDAHFNELH--GLPRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFR  358 (458)
Q Consensus       283 ~~l~~l~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~  358 (458)
                      ..+..+++|++|++++|.++  .+|..+..+++|++|++++|  .+..+ |..++.+++|+.|++++|+++.++ ..+..
T Consensus       439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  516 (570)
T 2z63_A          439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR  516 (570)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC--ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence            66778888888888888887  37778888888888888887  45555 667888888888888888888775 45788


Q ss_pred             CCCCcEEECcCCCCCCC
Q 012694          359 LENLTKLNLDQNPLVIP  375 (458)
Q Consensus       359 l~~L~~L~L~~n~i~~~  375 (458)
                      +++|++|++++|++.+.
T Consensus       517 l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          517 LTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CTTCCEEECCSSCBCCC
T ss_pred             ccCCcEEEecCCcccCC
Confidence            88888888888888865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1e-22  Score=192.65  Aligned_cols=197  Identities=33%  Similarity=0.459  Sum_probs=175.8

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCchh-hcCCCCccEEEeeC
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNVSG  228 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~  228 (458)
                      ..+.++++++.++.+|..+.  ++|++|++++|.++.++. .|.++++|++|++++|.++.++.. +.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            46789999999999987654  689999999999998875 699999999999999999998764 58899999999999


Q ss_pred             CCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCccc
Q 012694          229 NKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLPR  306 (458)
Q Consensus       229 n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~  306 (458)
                      |+++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            99998875 568899999999999999999988888999999999999999988765 7889999999999999999875


Q ss_pred             -cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCC
Q 012694          307 -AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRA  351 (458)
Q Consensus       307 -~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~  351 (458)
                       .+..+++|++|++++|  .+..++. .+..+++|+.|++++|.+..
T Consensus       175 ~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNN--QLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHhccCCCcCEEECCCC--cCCcCCHHHhccccCCCEEEecCCCeeC
Confidence             5889999999999998  5667765 47889999999999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.7e-24  Score=209.79  Aligned_cols=213  Identities=19%  Similarity=0.184  Sum_probs=186.6

Q ss_pred             cCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694          147 ESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       147 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l  226 (458)
                      ...++|++|++++|.++.++. +..+++|++|++++|.++.++    ..++|++|++++|.++.++..  .+++|++|++
T Consensus        55 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l  127 (317)
T 3o53_A           55 APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYL  127 (317)
T ss_dssp             TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEEC
T ss_pred             hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEEC
Confidence            457899999999999987765 899999999999999998775    348999999999999988543  4789999999


Q ss_pred             eCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchh-hccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCc
Q 012694          227 SGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNI-GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       227 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l  304 (458)
                      ++|+++.++ ..+..+++|++|++++|.++.++... ...+++|++|++++|.++.++. ...+++|++|++++|.++++
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcc
Confidence            999999875 47888999999999999999876544 3478999999999999998854 44589999999999999999


Q ss_pred             cccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC--CCchhhhCCCCCcEEECcC
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR--ALPDTFFRLENLTKLNLDQ  369 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~  369 (458)
                      |..+..+++|++|++++|  .+..+|..+..+++|+.|++++|.++  .++..+..+++|+.|++.+
T Consensus       207 ~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          207 GPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhcccCcccEEECcCC--cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            888999999999999998  67789999999999999999999998  5678888888888888763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=2.7e-23  Score=216.30  Aligned_cols=107  Identities=28%  Similarity=0.391  Sum_probs=69.5

Q ss_pred             CCEEeccCCcCccCCccc-cCCCCCcEEEcccCCCCC-cc---ccccCCCcccEEEccCCCCCCCccc---hhhcCCCCC
Q 012694          268 LERLSIKLNKLRTFPPSI-CEMRSLKYLDAHFNELHG-LP---RAIGKLTRLEVLNLSSNFNDLTELP---ETIGDLINL  339 (458)
Q Consensus       268 L~~L~L~~n~l~~l~~~l-~~l~~L~~L~l~~n~l~~-l~---~~l~~l~~L~~L~L~~n~~~~~~l~---~~l~~l~~L  339 (458)
                      |+.|++++|.++.+|..+ ..+++|++|++++|.+++ +|   ..++.+++|++|++++|  .+..++   ..++.+++|
T Consensus       312 L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN--HLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             CCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS--CCCCHHHHHHHGGGCTTC
T ss_pred             ceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC--cccccccchhhhhcCCCC
Confidence            444444444444454444 356777777777777766 22   23566777777777776  455554   346677778


Q ss_pred             CEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694          340 RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       340 ~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      ++|++++|+++.+|..+..+++|++|++++|.++..+
T Consensus       390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~  426 (549)
T 2z81_A          390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK  426 (549)
T ss_dssp             CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCC
T ss_pred             CEEECCCCCCccCChhhcccccccEEECCCCCccccc
Confidence            8888888877777777777777777777777776544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=1e-22  Score=217.48  Aligned_cols=229  Identities=27%  Similarity=0.306  Sum_probs=105.1

Q ss_pred             CCCceeEEEecCCCCC--ccch-hhCC--CCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCC-Cc-hhhcCCC
Q 012694          148 SGVVVETVDLADRQLK--LLPE-AFGR--LRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQS-LP-DSIGLLL  219 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~--~l~~-~~~~--l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~-l~-~~l~~l~  219 (458)
                      .+++|++|++++|.+.  .++. .|..  .++|++|++++|.++.+ +..+..+++|++|++++|.++. +| ..+.+++
T Consensus       351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~  430 (680)
T 1ziw_A          351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE  430 (680)
T ss_dssp             TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred             cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence            3456666666665432  2221 1111  13455555555555544 2345555555555555555542 32 3445555


Q ss_pred             CccEEEeeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcC--CchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEE
Q 012694          220 NLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCL--PTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLD  295 (458)
Q Consensus       220 ~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l--~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~  295 (458)
                      +|++|++++|+++.+ +..+..+++|+.|++++|.+..+  ....+..+++|+.|++++|.++.++. .+..+++|++|+
T Consensus       431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~  510 (680)
T 1ziw_A          431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD  510 (680)
T ss_dssp             TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEe
Confidence            555555555554433 23344445555555555444311  11122244455555555555544432 244444555555


Q ss_pred             cccCCCCCccc---------cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCch-hhhCCCCCcE
Q 012694          296 AHFNELHGLPR---------AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPD-TFFRLENLTK  364 (458)
Q Consensus       296 l~~n~l~~l~~---------~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~  364 (458)
                      +++|.++.++.         .+..+++|++|++++|  .+..+|. .+..+++|+.|++++|+|+.+|. .+..+++|+.
T Consensus       511 Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             CCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            55554444311         1344445555555544  3334433 24444555555555555554432 2344455555


Q ss_pred             EECcCCCCCCCcHH
Q 012694          365 LNLDQNPLVIPPME  378 (458)
Q Consensus       365 L~L~~n~i~~~~~~  378 (458)
                      |++++|+++..+..
T Consensus       589 L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          589 LNLQKNLITSVEKK  602 (680)
T ss_dssp             EECTTSCCCBCCHH
T ss_pred             EECCCCcCCccChh
Confidence            55555555444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=9.5e-23  Score=189.18  Aligned_cols=202  Identities=20%  Similarity=0.255  Sum_probs=159.2

Q ss_pred             CCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCC-CCCCch-hhcCCCCccEEEeeC-CCCCCCc-h
Q 012694          162 LKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNL-LQSLPD-SIGLLLNLKVLNVSG-NKLNTLP-E  236 (458)
Q Consensus       162 l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~-l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~-~  236 (458)
                      ++.+|. +.  .+|++|++++|.++.++. .+.++++|++|++++|. ++.++. .+.++++|++|++++ |+++.++ .
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            677776 43  378888888888888765 67888888888888886 887754 678888888888887 8888776 4


Q ss_pred             hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCC---EEeccCC-cCccCCc-cccCCCCCc-EEEcccCCCCCccccccC
Q 012694          237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLE---RLSIKLN-KLRTFPP-SICEMRSLK-YLDAHFNELHGLPRAIGK  310 (458)
Q Consensus       237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~---~L~L~~n-~l~~l~~-~l~~l~~L~-~L~l~~n~l~~l~~~l~~  310 (458)
                      .+.++++|++|++++|.++.++.  +..+++|+   .|++++| .++.++. .+..+++|+ +|++++|.++.+|.....
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            57788888888888888888776  44677777   8888888 8887765 477888999 999999999888764444


Q ss_pred             CCcccEEEccCCCCCCCccc-hhhcCC-CCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCC
Q 012694          311 LTRLEVLNLSSNFNDLTELP-ETIGDL-INLRELDLSNNQIRALPDTFFRLENLTKLNLDQNP  371 (458)
Q Consensus       311 l~~L~~L~L~~n~~~~~~l~-~~l~~l-~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~  371 (458)
                      .++|++|++++|. .+..++ ..+..+ ++|+.|++++|+|+.+|..  .+++|+.|+++++.
T Consensus       178 ~~~L~~L~L~~n~-~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          178 GTKLDAVYLNKNK-YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCEEEEEECTTCT-TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCCEEEcCCCC-CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            4889999999871 255664 457778 8999999999999988754  67889999988763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=3.8e-23  Score=199.61  Aligned_cols=221  Identities=23%  Similarity=0.236  Sum_probs=180.2

Q ss_pred             CceeEEEecCCCCCc--cch--hhCCCCCCcEEEcccCCCCc-cchhh--cCCcccceeeeecCCCCCC-c----hhhcC
Q 012694          150 VVVETVDLADRQLKL--LPE--AFGRLRGLVSLNLSRNLLEA-MPDSI--AGLQKLEELDVSSNLLQSL-P----DSIGL  217 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~--l~~--~~~~l~~L~~L~l~~n~i~~-l~~~l--~~l~~L~~L~L~~n~l~~l-~----~~l~~  217 (458)
                      ..++.+.+.++.++.  +..  .+..+++|++|++++|.++. .|..+  ..+++|++|++++|.++.. +    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            457888998888762  211  12234679999999999984 45556  8999999999999999853 2    34467


Q ss_pred             CCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCc---CCc-hhhccCCCCCEEeccCCcCccCCcc----ccCC
Q 012694          218 LLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVC---LPT-NIGYGLLNLERLSIKLNKLRTFPPS----ICEM  288 (458)
Q Consensus       218 l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~---l~~-~~~~~l~~L~~L~L~~n~l~~l~~~----l~~l  288 (458)
                      +++|++|++++|+++.++ ..+..+++|++|++++|.+..   ++. .....+++|++|++++|.++.++..    +..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            999999999999999775 678899999999999999764   322 2234789999999999999877552    4678


Q ss_pred             CCCcEEEcccCCCCCc-cccccCC---CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcE
Q 012694          289 RSLKYLDAHFNELHGL-PRAIGKL---TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTK  364 (458)
Q Consensus       289 ~~L~~L~l~~n~l~~l-~~~l~~l---~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~  364 (458)
                      ++|++|++++|.++++ |..+..+   ++|++|++++|  .+..+|..+.  ++|+.|++++|+|+.+|. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA--GLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS--CCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC--CCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence            9999999999999996 7667666   69999999998  6678888764  799999999999999864 788999999


Q ss_pred             EECcCCCCCCC
Q 012694          365 LNLDQNPLVIP  375 (458)
Q Consensus       365 L~L~~n~i~~~  375 (458)
                      |++++|+++..
T Consensus       299 L~L~~N~l~~~  309 (310)
T 4glp_A          299 LTLDGNPFLVP  309 (310)
T ss_dssp             EECSSTTTSCC
T ss_pred             EECcCCCCCCC
Confidence            99999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=3.5e-22  Score=209.62  Aligned_cols=206  Identities=31%  Similarity=0.355  Sum_probs=167.3

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      .+++.|+++++.++.+|..+.  ++|++|++++|.|+.+|.   .+++|++|++++|.|+.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            358999999999999998665  799999999999999987   67899999999999999987   7899999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCC-----------------CCCc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEM-----------------RSLK  292 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l-----------------~~L~  292 (458)
                      +++.+|.   .+++|+.|++++|.++.++..    +++|++|++++|.++.+|..+.++                 ++|+
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~  184 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ  184 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             cCCCCCC---CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCc
Confidence            9999877   578999999999999998863    588999999999888765433222                 6778


Q ss_pred             EEEcccCCCCCccccccC-----------------CCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchh
Q 012694          293 YLDAHFNELHGLPRAIGK-----------------LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT  355 (458)
Q Consensus       293 ~L~l~~n~l~~l~~~l~~-----------------l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~  355 (458)
                      .|++++|.++++|..+.+                 +++|+.|++++|  .+..+|   ..+++|+.|++++|+|+.+|. 
T Consensus       185 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-  258 (622)
T 3g06_A          185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN--RLTSLP---VLPSELKELMVSGNRLTSLPM-  258 (622)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--CCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred             EEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC--ccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence            888888887776543221                 145667777766  455565   456788888888888888876 


Q ss_pred             hhCCCCCcEEECcCCCCCCCcHH
Q 012694          356 FFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       356 l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                        .+++|+.|+|++|+++.+|..
T Consensus       259 --~~~~L~~L~Ls~N~L~~lp~~  279 (622)
T 3g06_A          259 --LPSGLLSLSVYRNQLTRLPES  279 (622)
T ss_dssp             --CCTTCCEEECCSSCCCSCCGG
T ss_pred             --ccccCcEEeCCCCCCCcCCHH
Confidence              568899999999999877654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=1.7e-22  Score=210.21  Aligned_cols=173  Identities=27%  Similarity=0.331  Sum_probs=88.9

Q ss_pred             ceeeeecCCCCCCchhh-cCCCCccEEEeeCCCCCC-Cc---hhhcCCCCCcEEEcCCCCCCcCCc--hhhccCCCCCEE
Q 012694          199 EELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNT-LP---ESIARCSSLVELDASFNNLVCLPT--NIGYGLLNLERL  271 (458)
Q Consensus       199 ~~L~L~~n~l~~l~~~l-~~l~~L~~L~l~~n~l~~-l~---~~l~~l~~L~~L~l~~n~l~~l~~--~~~~~l~~L~~L  271 (458)
                      ++|++++|.++.+|..+ .++++|++|++++|+++. +|   ..+..+++|++|++++|.++.++.  ..+..+++|++|
T Consensus       313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred             eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence            33333333333344333 245556666666665553 21   124455666666666666655542  334456666666


Q ss_pred             eccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc------------------CCCcccEEEccCCCCCCCccchhh
Q 012694          272 SIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG------------------KLTRLEVLNLSSNFNDLTELPETI  333 (458)
Q Consensus       272 ~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~------------------~l~~L~~L~L~~n~~~~~~l~~~l  333 (458)
                      ++++|.++.+|..+..+++|++|++++|.++.++..+.                  .+++|++|++++|  .+..+|. .
T Consensus       393 ~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ip~-~  469 (549)
T 2z81_A          393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN--KLKTLPD-A  469 (549)
T ss_dssp             ECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC-G
T ss_pred             ECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC--ccCcCCC-c
Confidence            66666666666666666666666666666655443221                  3444444555444  3334443 2


Q ss_pred             cCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCC
Q 012694          334 GDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       334 ~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      ..+++|+.|++++|+|+.++ ..+..+++|+.|++++|++.+
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence            34455555555555555443 234555555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=9.4e-23  Score=207.15  Aligned_cols=202  Identities=31%  Similarity=0.338  Sum_probs=163.6

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ++|++|++++|.++.+|..   +.+|++|++++|.++.++..   .++|++|++++|.++.+| .++++++|++|++++|
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence            5788999999988887753   47889999999988877542   268999999999998888 5888999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      +++.+|..+   .+|++|++++|.++.++.  +.++++|+.|++++|.++.+|...   ++|++|++++|.++.+|. ++
T Consensus       164 ~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~  234 (454)
T 1jl5_A          164 SLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ  234 (454)
T ss_dssp             CCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT
T ss_pred             cCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC
Confidence            988877543   589999999999988873  458899999999999988876543   589999999999998885 88


Q ss_pred             CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+++|++|++++|  .+..+|..   +++|+.|++++|+++.+|..   .++|++|++++|.+++.
T Consensus       235 ~l~~L~~L~l~~N--~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          235 NLPFLTTIYADNN--LLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             TCTTCCEEECCSS--CCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred             CCCCCCEEECCCC--cCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence            8999999999987  55666653   47889999999998888754   36788888888887763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=1.3e-22  Score=216.61  Aligned_cols=225  Identities=26%  Similarity=0.357  Sum_probs=170.7

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l  226 (458)
                      +++++|++++|.++.++. .|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|. .+.++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            578999999999887765 688889999999999988876 4668889999999999999988876 5888999999999


Q ss_pred             eCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-c--cCCCCCcEEEcccCCCC
Q 012694          227 SGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-I--CEMRSLKYLDAHFNELH  302 (458)
Q Consensus       227 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l--~~l~~L~~L~l~~n~l~  302 (458)
                      ++|+++.++ ..+.++++|++|++++|.++.++...+.++++|++|++++|.++.++.. +  ..+++|++|++++|.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            999888776 5688889999999999988887776666888999999999988876543 2  35578888888888887


Q ss_pred             Ccc-ccccCC---------------------------CcccEEEccCCCCCCCc-cchhhcCCCC--CCEEeccCCCCCC
Q 012694          303 GLP-RAIGKL---------------------------TRLEVLNLSSNFNDLTE-LPETIGDLIN--LRELDLSNNQIRA  351 (458)
Q Consensus       303 ~l~-~~l~~l---------------------------~~L~~L~L~~n~~~~~~-l~~~l~~l~~--L~~L~L~~n~l~~  351 (458)
                      +++ ..+..+                           ++|+.|++++|  .+.. .|.++..++.  |+.|++++|+++.
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n--~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS--CCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC--cccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            753 344433                           34555566655  2222 2344555543  7777777777776


Q ss_pred             C-chhhhCCCCCcEEECcCCCCCCCc
Q 012694          352 L-PDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       352 l-~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      + +..++.+++|++|++++|.+...+
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~  288 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLF  288 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred             cCcccccCcccccEeeCCCCccCccC
Confidence            5 356777777777777777776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.4e-22  Score=192.11  Aligned_cols=200  Identities=25%  Similarity=0.331  Sum_probs=173.6

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l  226 (458)
                      +++++|++++|.++.++. .|..+++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            469999999999998876 78999999999999999998864 6899999999999999999875 67899999999999


Q ss_pred             eCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCC-ccccCCCCCc----EEEcccC
Q 012694          227 SGNKLNTLPE-SIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLK----YLDAHFN  299 (458)
Q Consensus       227 ~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~----~L~l~~n  299 (458)
                      ++|.++.++. .+..+++|++|++++|.++.+. ...+..+++|++|++++|.++.++ ..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            9999998765 6889999999999999999753 344558999999999999999775 4566666666    8999999


Q ss_pred             CCCCccccccCCCcccEEEccCCCCCCCccchh-hcCCCCCCEEeccCCCCCC
Q 012694          300 ELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET-IGDLINLRELDLSNNQIRA  351 (458)
Q Consensus       300 ~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~-l~~l~~L~~L~L~~n~l~~  351 (458)
                      .++.++.......+|++|++++|  .+..+|.. +..+++|+.|++++|.++.
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSS--CCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccccCccccCCCcccEEECCCC--ceeecCHhHhcccccccEEEccCCcccc
Confidence            99998876666679999999998  56777654 5889999999999999884

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=1.3e-22  Score=188.21  Aligned_cols=193  Identities=23%  Similarity=0.337  Sum_probs=173.6

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCC-CCccch-hhcCCcccceeeeec-CCCCCCc-hhhcCCCCccEE
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNL-LEAMPD-SIAGLQKLEELDVSS-NLLQSLP-DSIGLLLNLKVL  224 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~-i~~l~~-~l~~l~~L~~L~L~~-n~l~~l~-~~l~~l~~L~~L  224 (458)
                      .+++.|++++|.++.++. .|..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++ ..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            479999999999998877 78999999999999997 998875 689999999999998 9999886 578899999999


Q ss_pred             EeeCCCCCCCchhhcCCCCCc---EEEcCCC-CCCcCCchhhccCCCCC-EEeccCCcCccCCccccCCCCCcEEEcccC
Q 012694          225 NVSGNKLNTLPESIARCSSLV---ELDASFN-NLVCLPTNIGYGLLNLE-RLSIKLNKLRTFPPSICEMRSLKYLDAHFN  299 (458)
Q Consensus       225 ~l~~n~l~~l~~~l~~l~~L~---~L~l~~n-~l~~l~~~~~~~l~~L~-~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  299 (458)
                      ++++|+++.+|. +..+++|+   +|++++| .++.++...+.++++|+ .|++++|.++.+|......++|++|++++|
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence            999999999986 88888888   9999999 99999998888999999 999999999998876655689999999999


Q ss_pred             C-CCCcc-ccccCC-CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCC
Q 012694          300 E-LHGLP-RAIGKL-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN  347 (458)
Q Consensus       300 ~-l~~l~-~~l~~l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n  347 (458)
                      . ++.++ ..+..+ ++|+.|++++|  .+..+|..  .+++|+.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N--~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQT--SVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTC--CCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCC--ccccCChh--HhccCceeeccCc
Confidence            5 99986 468888 99999999998  66788765  7889999999887

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2.1e-23  Score=213.85  Aligned_cols=213  Identities=19%  Similarity=0.183  Sum_probs=187.2

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEE
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLN  225 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  225 (458)
                      +..+++|++|++++|.++..++ +..+++|++|++++|.++.++.    .++|++|++++|.++.++..  .+++|++|+
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~  126 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIY  126 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEE
T ss_pred             HhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEE
Confidence            4467899999999999986665 8999999999999999988764    38999999999999988543  578999999


Q ss_pred             eeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchh-hccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCC
Q 012694          226 VSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNI-GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       226 l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~  303 (458)
                      +++|.++.+ |..++.+++|++|++++|.++.++... ...+++|+.|++++|.++.++. ...+++|++|++++|.+++
T Consensus       127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC
Confidence            999999977 557888999999999999999765444 4478999999999999998854 4569999999999999999


Q ss_pred             ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC--CCchhhhCCCCCcEEECc
Q 012694          304 LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR--ALPDTFFRLENLTKLNLD  368 (458)
Q Consensus       304 l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~  368 (458)
                      +|..+..+++|+.|++++|  .+..+|..++.+++|+.|++++|.+.  .+|.++..++.|+.+++.
T Consensus       206 ~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          206 MGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHhHcCCCCccEEEecCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9888999999999999998  67789999999999999999999998  667788888888888885

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=3.9e-22  Score=217.94  Aligned_cols=107  Identities=29%  Similarity=0.389  Sum_probs=65.7

Q ss_pred             CCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEe
Q 012694          267 NLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELD  343 (458)
Q Consensus       267 ~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~  343 (458)
                      +|+.|++++|.+..+ +..+..+++|+.|++++|.++++ +..+..+++|++|++++|  .+..+ +..+..+++|+.|+
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN--LLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC--CCSCCCSCSCSSCTTCCEEE
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC--CCCccCHHHhcCCCCCCEEE
Confidence            445555555544433 33455566666666666666664 345666677777777766  33333 45566677777777


Q ss_pred             ccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          344 LSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       344 L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      +++|+|+.++ ..+..+++|++|++++|.++..
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            7777777664 3566677777777777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2e-22  Score=190.76  Aligned_cols=203  Identities=25%  Similarity=0.314  Sum_probs=162.5

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEee
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVS  227 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~  227 (458)
                      .++|+.|++.++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. .+.++++|++|+++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            367888999998888765 4778889999999999888874 68888899999999998888754 46888899999999


Q ss_pred             CCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCcc
Q 012694          228 GNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLP  305 (458)
Q Consensus       228 ~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~  305 (458)
                      +|+++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+++++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            9988877654 67888899999999988888887777888899999999988877654 577888999999999888866


Q ss_pred             c-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCC
Q 012694          306 R-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLEN  361 (458)
Q Consensus       306 ~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~  361 (458)
                      . .+..+++|++|++++|..        .+.+++|+.|+++.|+++ .+|.+++.++.
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCB--------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHhCCcCCCEEEccCCCc--------cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            4 578888899999988721        244667888888888777 56766666544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=4.7e-22  Score=217.31  Aligned_cols=229  Identities=26%  Similarity=0.306  Sum_probs=144.8

Q ss_pred             CCCceeEEEecCCC-CCcc-chhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCC-Cchh--hcCCCCc
Q 012694          148 SGVVVETVDLADRQ-LKLL-PEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQS-LPDS--IGLLLNL  221 (458)
Q Consensus       148 ~~~~L~~L~l~~~~-l~~l-~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~-l~~~--l~~l~~L  221 (458)
                      .+++|++|++++|. +..+ |..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++. ++..  +.++++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            44556666666653 2344 44566666666666666666655 4556666666666666666654 3332  6666667


Q ss_pred             cEEEeeCCCCCCC--chhhcCCCCCcEEEcCCCCCCcCCchhhccC--CC------------------------------
Q 012694          222 KVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGYGL--LN------------------------------  267 (458)
Q Consensus       222 ~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l--~~------------------------------  267 (458)
                      ++|++++|.++.+  +..++++++|++|++++|.++.+....+..+  ++                              
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            7777777666644  2356666777777777666654332222111  22                              


Q ss_pred             CCEEeccCCcCc-cCCccc------------------------------------cC--CCCCcEEEcccCCCCCc-ccc
Q 012694          268 LERLSIKLNKLR-TFPPSI------------------------------------CE--MRSLKYLDAHFNELHGL-PRA  307 (458)
Q Consensus       268 L~~L~L~~n~l~-~l~~~l------------------------------------~~--l~~L~~L~l~~n~l~~l-~~~  307 (458)
                      |+.|++++|.++ .++..+                                    ..  .++|+.|++++|.+.++ +..
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~  285 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV  285 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred             eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence            444444444332 111110                                    00  14677777777777664 456


Q ss_pred             ccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          308 IGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       308 l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      +..+++|+.|+|++|  .+..+ +..+..+++|+.|++++|+++.+ +..+..+++|++|++++|.+...+..
T Consensus       286 ~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  356 (844)
T 3j0a_A          286 FETLKDLKVLNLAYN--KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ  356 (844)
T ss_dssp             SSSCCCCCEEEEESC--CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred             hhcCCCCCEEECCCC--cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence            778888889999887  44554 45688899999999999999877 56888999999999999998877654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=4e-22  Score=208.25  Aligned_cols=129  Identities=27%  Similarity=0.356  Sum_probs=65.6

Q ss_pred             ceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEee
Q 012694          151 VVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVS  227 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~  227 (458)
                      .+++|++++|.++.++. .|..+++|++|++++|.++.++ ..|+++++|++|++++|.++.++ ..+.++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            35555555555554432 4555555555555555555443 33555555555555555555443 345555555555555


Q ss_pred             CCCCCCCch-hhcCCCCCcEEEcCCCCCCcC--CchhhccCCCCCEEeccCCcCcc
Q 012694          228 GNKLNTLPE-SIARCSSLVELDASFNNLVCL--PTNIGYGLLNLERLSIKLNKLRT  280 (458)
Q Consensus       228 ~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l--~~~~~~~l~~L~~L~L~~n~l~~  280 (458)
                      +|+++.++. .++++++|++|++++|.++.+  |.. +.++++|++|++++|.++.
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence            555554433 345555555555555555432  222 2245555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=8.9e-22  Score=204.18  Aligned_cols=187  Identities=29%  Similarity=0.392  Sum_probs=155.2

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      .+++.|++++|.++.+|..+  +++|++|++++|.|+.+|   ..+++|++|++++|.|+.+|. +.+  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            47999999999999888765  378999999999999888   567899999999999999887 655  8999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      +++.+|.   .+++|++|++++|.++.++.    .+++|+.|++++|.++.+|. +.  ++|++|++++|.|+.+|. +.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~  199 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP  199 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence            9998877   68899999999999998876    47889999999999998887 55  889999999999998887 55


Q ss_pred             CCCcc-------cEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC-CchhhhCC
Q 012694          310 KLTRL-------EVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA-LPDTFFRL  359 (458)
Q Consensus       310 ~l~~L-------~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l  359 (458)
                      .  +|       +.|+|++|  .+..+|..+..+++|+.|+|++|.|+. +|..+..+
T Consensus       200 ~--~L~~~~~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          200 V--RNHHSEETEIFFRCREN--RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ----------CCEEEECCSS--CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             H--hhhcccccceEEecCCC--cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            4  66       88888887  667888878778888888888888873 35555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=2.5e-21  Score=196.63  Aligned_cols=207  Identities=31%  Similarity=0.366  Sum_probs=103.1

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCC
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~  230 (458)
                      +|++|++++|.++.+| .+..+++|++|++++|.++.+|..+   .+|++|++++|.++.+| .++++++|++|++++|+
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence            4555555555555554 3555555555555555555544322   24555555555555544 34555555555555555


Q ss_pred             CCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcccc-----------------CCCCCcE
Q 012694          231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSIC-----------------EMRSLKY  293 (458)
Q Consensus       231 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~-----------------~l~~L~~  293 (458)
                      ++.+|...   ++|++|++++|.++.++.  +..+++|+.|++++|.++.+|....                 ..++|++
T Consensus       207 l~~l~~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~  281 (454)
T 1jl5_A          207 LKKLPDLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF  281 (454)
T ss_dssp             CSSCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCcCCCCc---CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCE
Confidence            44433211   244444444444444442  2244455555555554444432110                 0133444


Q ss_pred             EEcccCCCCCcccc---cc-------------CC-CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhh
Q 012694          294 LDAHFNELHGLPRA---IG-------------KL-TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTF  356 (458)
Q Consensus       294 L~l~~n~l~~l~~~---l~-------------~l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l  356 (458)
                      |++++|.+++++..   +.             .+ ++|++|++++|  .+..+|..   +++|+.|++++|+++.+|.  
T Consensus       282 L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N--~l~~lp~~---~~~L~~L~L~~N~l~~lp~--  354 (454)
T 1jl5_A          282 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN--KLIELPAL---PPRLERLIASFNHLAEVPE--  354 (454)
T ss_dssp             EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS--CCSCCCCC---CTTCCEEECCSSCCSCCCC--
T ss_pred             EECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC--cccccccc---CCcCCEEECCCCccccccc--
Confidence            44444444432210   00             11 24455555544  33334432   4667777777777777765  


Q ss_pred             hCCCCCcEEECcCCCCCCC
Q 012694          357 FRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       357 ~~l~~L~~L~L~~n~i~~~  375 (458)
                       .+++|++|++++|++++.
T Consensus       355 -~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          355 -LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             -CCTTCCEEECCSSCCSSC
T ss_pred             -hhhhccEEECCCCCCCcC
Confidence             467888888888888773

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4.3e-22  Score=192.21  Aligned_cols=198  Identities=20%  Similarity=0.213  Sum_probs=166.9

Q ss_pred             CCceeEEEecCCCCC-ccchhh--CCCCCCcEEEcccCCCCcc----c-hhhcCCcccceeeeecCCCCCCc-hhhcCCC
Q 012694          149 GVVVETVDLADRQLK-LLPEAF--GRLRGLVSLNLSRNLLEAM----P-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLL  219 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~-~l~~~~--~~l~~L~~L~l~~n~i~~l----~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~  219 (458)
                      .++|++|++++|.+. ..|..+  ..+++|++|++++|.++..    + ..+..+++|++|++++|.++.++ ..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            466999999999998 455566  8899999999999999852    1 34567999999999999999875 6788999


Q ss_pred             CccEEEeeCCCCCC---Cch--hhcCCCCCcEEEcCCCCCCcCCch---hhccCCCCCEEeccCCcCccC-CccccCC--
Q 012694          220 NLKVLNVSGNKLNT---LPE--SIARCSSLVELDASFNNLVCLPTN---IGYGLLNLERLSIKLNKLRTF-PPSICEM--  288 (458)
Q Consensus       220 ~L~~L~l~~n~l~~---l~~--~l~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~l-~~~l~~l--  288 (458)
                      +|++|++++|++..   ++.  .+..+++|++|++++|.++.++..   .+..+++|++|++++|.++.+ |..+..+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999999763   332  336789999999999999876653   445789999999999999976 7777666  


Q ss_pred             -CCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC
Q 012694          289 -RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA  351 (458)
Q Consensus       289 -~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~  351 (458)
                       ++|++|++++|.++.+|..+.  ++|++|+|++|  .+..+|. +..+++|+.|++++|.|++
T Consensus       250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N--~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN--RLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC--CCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC--cCCCCch-hhhCCCccEEECcCCCCCC
Confidence             699999999999999988764  89999999998  6667655 6788999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=2.1e-21  Score=183.82  Aligned_cols=178  Identities=31%  Similarity=0.503  Sum_probs=108.4

Q ss_pred             CCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEec
Q 012694          194 GLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI  273 (458)
Q Consensus       194 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L  273 (458)
                      .+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++...+..+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            3444444444444444432 2444445555555555444432 4445555555555555555555544445556666666


Q ss_pred             cCCcCccCCcc-ccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCC
Q 012694          274 KLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIR  350 (458)
Q Consensus       274 ~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~  350 (458)
                      ++|.++.++.. +..+++|++|++++|.+++++. .+..+++|++|++++|  .+..++. .++.+++|+.|++++|+++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN--QLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC--CcCccCHHHhcCCccCCEEECCCCcCC
Confidence            66666555433 4566677777777777776553 4567777777777776  4445543 3577788888888888888


Q ss_pred             CCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          351 ALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       351 ~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .++ ..+..+++|++|++++|++.+.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcccc
Confidence            775 3567888888888888888754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=5.4e-21  Score=201.82  Aligned_cols=74  Identities=26%  Similarity=0.393  Sum_probs=49.8

Q ss_pred             cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCcHHHH
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                      |..+..+++|++|+|++|  .+..+ |..++++++|++|+|++|+|+.++ ..+..+++|++|+|++|+++..++..+
T Consensus       487 ~~~~~~l~~L~~L~Ls~N--~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             CSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             chhhhhccccCEEECCCC--ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            345566677777777776  44554 455677777777777777777663 456777777777777777776655433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=1.8e-21  Score=201.85  Aligned_cols=183  Identities=32%  Similarity=0.445  Sum_probs=158.9

Q ss_pred             CCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCC
Q 012694          173 RGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN  252 (458)
Q Consensus       173 ~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n  252 (458)
                      .+|++|++++|.++.+|..+.  ++|++|++++|.|+.+|   ..+++|++|++++|+++.+|. +.+  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            389999999999999987653  78999999999999998   467899999999999999887 655  9999999999


Q ss_pred             CCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccchh
Q 012694          253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPET  332 (458)
Q Consensus       253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~  332 (458)
                      .++.+|.    .+++|+.|++++|.++.+|.   .+++|++|++++|.++++|. +.  ++|+.|+|++|  .+..+|. 
T Consensus       131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N--~L~~lp~-  197 (571)
T 3cvr_A          131 QLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN--LLESLPA-  197 (571)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS--CCSSCCC-
T ss_pred             cCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC--CCCchhh-
Confidence            9999887    57899999999999999887   57899999999999999988 65  89999999998  6678887 


Q ss_pred             hcCCCCC-------CEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          333 IGDLINL-------RELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       333 l~~l~~L-------~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      +..  +|       +.|+|++|+|+.+|..+..+++|+.|+|++|++++..+.
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            554  77       999999999999998888899999999999999865443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=4.4e-21  Score=183.46  Aligned_cols=189  Identities=21%  Similarity=0.262  Sum_probs=150.1

Q ss_pred             EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC
Q 012694          154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT  233 (458)
Q Consensus       154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~  233 (458)
                      .+.+.++.+..+. .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +.++++|++|++++|.++.
T Consensus        28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence            3345566665443 2356788999999999998885 48889999999999999998876 8889999999999999888


Q ss_pred             CchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCc
Q 012694          234 LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTR  313 (458)
Q Consensus       234 l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~  313 (458)
                      ++. +..+++|++|++++|.++.++  .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++++. +..+++
T Consensus       105 ~~~-l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~  179 (291)
T 1h6t_A          105 LSS-LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK  179 (291)
T ss_dssp             GGG-GTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             Chh-hccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCc
Confidence            754 888889999999999888874  233688888888888888877 567788888888888888888766 778888


Q ss_pred             ccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694          314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP  353 (458)
Q Consensus       314 L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~  353 (458)
                      |++|++++|  .+..++. +..+++|+.|++++|.++..|
T Consensus       180 L~~L~L~~N--~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          180 LQNLYLSKN--HISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CCEEECCSS--CCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             cCEEECCCC--cCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            888888887  5566653 777888888888888777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.6e-20  Score=175.51  Aligned_cols=176  Identities=28%  Similarity=0.421  Sum_probs=125.7

Q ss_pred             ccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC
Q 012694          197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL  275 (458)
Q Consensus       197 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~  275 (458)
                      ..++++++++.++.+|..+.  ++|+.|++++|+++.++ ..+.++++|++|++++|.++.++...+..+++|+.|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34555555555555555443  45666666666665543 2456666666666666666666665555667777777777


Q ss_pred             CcCccCCc-cccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCC
Q 012694          276 NKLRTFPP-SICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRAL  352 (458)
Q Consensus       276 n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l  352 (458)
                      |.++.++. .+..+++|++|++++|.++.++. .+..+++|++|+|++|  .+..++. .++.+++|+.|+|++|+|+.+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC--cCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            77766553 45677788888888888887764 4677888888888887  5666665 578889999999999999988


Q ss_pred             ch-hhhCCCCCcEEECcCCCCCCCc
Q 012694          353 PD-TFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       353 ~~-~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +. .+..+++|++|++++|++.+..
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCCc
Confidence            64 7888999999999999998763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=1.1e-20  Score=180.69  Aligned_cols=165  Identities=22%  Similarity=0.298  Sum_probs=107.3

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.++.++. +..+++|++|++++|
T Consensus        46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred             CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence            45666677666666664 35666667777777766666654 6666667777777766666543 666666777777766


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      +++.+ ..+..+++|++|++++|.++.++  .+..+++|+.|++++|.++.++. +..+++|++|++++|.+++++. +.
T Consensus       123 ~i~~~-~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~  197 (291)
T 1h6t_A          123 GISDI-NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LA  197 (291)
T ss_dssp             CCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GT
T ss_pred             cCCCC-hhhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hc
Confidence            66665 34666666777777766666652  23356667777777666666644 6666667777777776666654 66


Q ss_pred             CCCcccEEEccCC
Q 012694          310 KLTRLEVLNLSSN  322 (458)
Q Consensus       310 ~l~~L~~L~L~~n  322 (458)
                      .+++|+.|++++|
T Consensus       198 ~l~~L~~L~l~~n  210 (291)
T 1h6t_A          198 GLKNLDVLELFSQ  210 (291)
T ss_dssp             TCTTCSEEEEEEE
T ss_pred             cCCCCCEEECcCC
Confidence            6666777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.8e-22  Score=198.54  Aligned_cols=224  Identities=20%  Similarity=0.212  Sum_probs=179.2

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCc-----cchhhcCCcccceeeeecCCCCC----Cchhh------
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA-----MPDSIAGLQKLEELDVSSNLLQS----LPDSI------  215 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~----l~~~l------  215 (458)
                      .++...+....+..++..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+..    +|..+      
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            3444444444555777788889999999999999984     34457899999999999986653    34443      


Q ss_pred             -cCCCCccEEEeeCCCCCC-----CchhhcCCCCCcEEEcCCCCCCcCCchhh----ccC---------CCCCEEeccCC
Q 012694          216 -GLLLNLKVLNVSGNKLNT-----LPESIARCSSLVELDASFNNLVCLPTNIG----YGL---------LNLERLSIKLN  276 (458)
Q Consensus       216 -~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~~~~~----~~l---------~~L~~L~L~~n  276 (458)
                       ..+++|++|++++|.++.     ++..+..+++|++|++++|.++......+    ..+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence             789999999999999986     67788999999999999999974432222    133         89999999999


Q ss_pred             cCc--cCC---ccccCCCCCcEEEcccCCCCC------ccccccCCCcccEEEccCCCCC---CCccchhhcCCCCCCEE
Q 012694          277 KLR--TFP---PSICEMRSLKYLDAHFNELHG------LPRAIGKLTRLEVLNLSSNFND---LTELPETIGDLINLREL  342 (458)
Q Consensus       277 ~l~--~l~---~~l~~l~~L~~L~l~~n~l~~------l~~~l~~l~~L~~L~L~~n~~~---~~~l~~~l~~l~~L~~L  342 (458)
                      .++  .++   ..+..+++|++|++++|.++.      ++..+..+++|++|+|++|...   ...+|..+..+++|+.|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            997  344   467788999999999999983      3337889999999999998321   15677888999999999


Q ss_pred             eccCCCCCC-----CchhhhC--CCCCcEEECcCCCCCC
Q 012694          343 DLSNNQIRA-----LPDTFFR--LENLTKLNLDQNPLVI  374 (458)
Q Consensus       343 ~L~~n~l~~-----l~~~l~~--l~~L~~L~L~~n~i~~  374 (458)
                      +|++|+|+.     ++..+..  +++|++|+|++|.++.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            999999985     3566644  9999999999999985

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.1e-20  Score=173.58  Aligned_cols=170  Identities=27%  Similarity=0.404  Sum_probs=117.6

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeC
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSG  228 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~  228 (458)
                      ..++++++++.++.+|..+.  +++++|++++|.++.++. .+.++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            45677888888877776554  577788888887776653 5777777778888777777664 3467777777777777


Q ss_pred             CCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCccc
Q 012694          229 NKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLPR  306 (458)
Q Consensus       229 n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~  306 (458)
                      |+++.++ ..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+++++.
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            7777665 345667777777777777777776666566777777777777766654 45666667777777776666543


Q ss_pred             -cccCCCcccEEEccCC
Q 012694          307 -AIGKLTRLEVLNLSSN  322 (458)
Q Consensus       307 -~l~~l~~L~~L~L~~n  322 (458)
                       .+..+++|++|++++|
T Consensus       173 ~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             TTTTTCTTCCEEECCSC
T ss_pred             HHHhCCCCCCEEEeeCC
Confidence             5566666666666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.5e-21  Score=190.18  Aligned_cols=216  Identities=19%  Similarity=0.257  Sum_probs=131.9

Q ss_pred             eeEEEecCCCCCccchhhCCC--CCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC--CchhhcCCCCccEEEee
Q 012694          152 VETVDLADRQLKLLPEAFGRL--RGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS--LPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       152 L~~L~l~~~~l~~l~~~~~~l--~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~l~  227 (458)
                      ++.++++++.+.  +..+..+  ++++.|++++|.++..+..+..+++|++|++++|.++.  ++..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            566677666655  3344444  56777777777666555555566777777777776653  55566667777777777


Q ss_pred             CCCCC-CCchhhcCCCCCcEEEcCCC-CCCc--CCchhhccCCCCCEEeccCC-cCcc--CCccccCCC-CCcEEEcccC
Q 012694          228 GNKLN-TLPESIARCSSLVELDASFN-NLVC--LPTNIGYGLLNLERLSIKLN-KLRT--FPPSICEMR-SLKYLDAHFN  299 (458)
Q Consensus       228 ~n~l~-~l~~~l~~l~~L~~L~l~~n-~l~~--l~~~~~~~l~~L~~L~L~~n-~l~~--l~~~l~~l~-~L~~L~l~~n  299 (458)
                      +|.++ ..+..+..+++|++|++++| .++.  ++ ..+..+++|++|++++| .++.  ++..+..++ +|++|++++|
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            77666 34556666777777777776 4553  22 22335667777777777 6663  455566666 7777777777


Q ss_pred             --CCC--CccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCC-CCCC-chhhhCCCCCcEEECcCC
Q 012694          300 --ELH--GLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQ-IRAL-PDTFFRLENLTKLNLDQN  370 (458)
Q Consensus       300 --~l~--~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~-l~~l-~~~l~~l~~L~~L~L~~n  370 (458)
                        .++  .++..+..+++|++|++++|..-....+..+..+++|+.|++++|. ++.. ...+.++++|++|++++|
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence              343  2555566677777777777621112334456666777777777773 3211 124566777777777766

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.7e-21  Score=192.19  Aligned_cols=225  Identities=20%  Similarity=0.252  Sum_probs=175.3

Q ss_pred             CCceeEEEecCCCCCccc-----hhhCCCC-CCcEEEcccCCCCcc-chhhcCC-----cccceeeeecCCCCCCc-h--
Q 012694          149 GVVVETVDLADRQLKLLP-----EAFGRLR-GLVSLNLSRNLLEAM-PDSIAGL-----QKLEELDVSSNLLQSLP-D--  213 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~-----~~~~~l~-~L~~L~l~~n~i~~l-~~~l~~l-----~~L~~L~L~~n~l~~l~-~--  213 (458)
                      .++|++|++++|.++..+     ..+..++ +|++|++++|.++.. +..+..+     ++|++|++++|.++..+ .  
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            456999999999998665     5788888 999999999999865 3445543     99999999999998653 2  


Q ss_pred             --hhcCC-CCccEEEeeCCCCCCCch-----hhcC-CCCCcEEEcCCCCCCcCCchh----hccCC-CCCEEeccCCcCc
Q 012694          214 --SIGLL-LNLKVLNVSGNKLNTLPE-----SIAR-CSSLVELDASFNNLVCLPTNI----GYGLL-NLERLSIKLNKLR  279 (458)
Q Consensus       214 --~l~~l-~~L~~L~l~~n~l~~l~~-----~l~~-l~~L~~L~l~~n~l~~l~~~~----~~~l~-~L~~L~L~~n~l~  279 (458)
                        .+..+ ++|++|++++|+++..+.     .+.. .++|++|++++|.++......    +..++ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence              25555 899999999999986542     2444 469999999999998433221    12444 9999999999998


Q ss_pred             cCC-----ccccCC-CCCcEEEcccCCCCC-----ccccccC-CCcccEEEccCCCCCCCcc-----chhhcCCCCCCEE
Q 012694          280 TFP-----PSICEM-RSLKYLDAHFNELHG-----LPRAIGK-LTRLEVLNLSSNFNDLTEL-----PETIGDLINLREL  342 (458)
Q Consensus       280 ~l~-----~~l~~l-~~L~~L~l~~n~l~~-----l~~~l~~-l~~L~~L~L~~n~~~~~~l-----~~~l~~l~~L~~L  342 (458)
                      ...     ..+..+ ++|++|++++|.+++     ++..+.. .++|++|+|++|.  ++..     ...+..+++|+.|
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC--LHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC--CCCCCHHHHHHTTTTTTTCSEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC--CCcHHHHHHHHHHhcCCCccEE
Confidence            554     245555 599999999999998     6666666 4599999999984  4443     3345778999999


Q ss_pred             eccCCCCCCCc--------hhhhCCCCCcEEECcCCCCCCC
Q 012694          343 DLSNNQIRALP--------DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       343 ~L~~n~l~~l~--------~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      ++++|.++.+.        ..+..+++|++|++++|++...
T Consensus       259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            99999855443        3567788999999999999865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=2.1e-21  Score=189.17  Aligned_cols=225  Identities=19%  Similarity=0.198  Sum_probs=180.5

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCc--cchhhcCCcccceeeeecCCCC-CCchhhcCCCCccEEEe
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQ-SLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~--l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l  226 (458)
                      ..++.|++++|.+...+..+..+++|++|++++|.++.  ++..+..+++|++|++++|.++ ..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            56999999999998776667789999999999999874  7778999999999999999988 45778889999999999


Q ss_pred             eCC-CCC--CCchhhcCCCCCcEEEcCCC-CCCcC-CchhhccCC-CCCEEeccCCc--C--ccCCccccCCCCCcEEEc
Q 012694          227 SGN-KLN--TLPESIARCSSLVELDASFN-NLVCL-PTNIGYGLL-NLERLSIKLNK--L--RTFPPSICEMRSLKYLDA  296 (458)
Q Consensus       227 ~~n-~l~--~l~~~l~~l~~L~~L~l~~n-~l~~l-~~~~~~~l~-~L~~L~L~~n~--l--~~l~~~l~~l~~L~~L~l  296 (458)
                      ++| .++  .++..+..+++|++|++++| .++.. .......++ +|++|++++|.  +  ..++..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            999 787  36777888999999999999 88853 123344789 99999999995  4  356677788999999999


Q ss_pred             ccCC-CCC-ccccccCCCcccEEEccCCCCCCC-ccchhhcCCCCCCEEeccCCCCCCCchhhhCC-CCCcEEECcCCCC
Q 012694          297 HFNE-LHG-LPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIRALPDTFFRL-ENLTKLNLDQNPL  372 (458)
Q Consensus       297 ~~n~-l~~-l~~~l~~l~~L~~L~L~~n~~~~~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l-~~L~~L~L~~n~i  372 (458)
                      ++|. +++ .+..+..+++|++|++++|. .+. .....++.+++|+.|++++| ++.-  .+..+ .++..|++++|.+
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccC
Confidence            9999 654 56678999999999999983 221 11135788999999999999 5531  22222 2366667899999


Q ss_pred             CCCcHH
Q 012694          373 VIPPME  378 (458)
Q Consensus       373 ~~~~~~  378 (458)
                      ++..+.
T Consensus       306 ~~~~~~  311 (336)
T 2ast_B          306 TTIARP  311 (336)
T ss_dssp             CCTTCS
T ss_pred             ccccCC
Confidence            876543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=1.3e-20  Score=185.95  Aligned_cols=223  Identities=21%  Similarity=0.201  Sum_probs=174.6

Q ss_pred             EEEecCCCCCc-cchhhCCCCCCcEEEcccCCCCccc-----hhhcCCc-ccceeeeecCCCCCC-chhhcCC-----CC
Q 012694          154 TVDLADRQLKL-LPEAFGRLRGLVSLNLSRNLLEAMP-----DSIAGLQ-KLEELDVSSNLLQSL-PDSIGLL-----LN  220 (458)
Q Consensus       154 ~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~i~~l~-----~~l~~l~-~L~~L~L~~n~l~~l-~~~l~~l-----~~  220 (458)
                      .+.++.|.++. +|..+....+|++|++++|.++..+     ..+.+++ +|++|++++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35788888884 4555555666999999999999765     5788898 999999999999865 4445443     99


Q ss_pred             ccEEEeeCCCCCCCch-----hhcCC-CCCcEEEcCCCCCCcCCchhhc----c-CCCCCEEeccCCcCc-----cCCcc
Q 012694          221 LKVLNVSGNKLNTLPE-----SIARC-SSLVELDASFNNLVCLPTNIGY----G-LLNLERLSIKLNKLR-----TFPPS  284 (458)
Q Consensus       221 L~~L~l~~n~l~~l~~-----~l~~l-~~L~~L~l~~n~l~~l~~~~~~----~-l~~L~~L~L~~n~l~-----~l~~~  284 (458)
                      |++|++++|.++..+.     .+..+ ++|++|++++|.++..+...+.    . .++|++|++++|.++     .++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999985532     35556 8999999999999987754332    2 369999999999998     44455


Q ss_pred             ccCCC-CCcEEEcccCCCCCcc-----ccccCC-CcccEEEccCCCCCCCc-----cchhhcC-CCCCCEEeccCCCCCC
Q 012694          285 ICEMR-SLKYLDAHFNELHGLP-----RAIGKL-TRLEVLNLSSNFNDLTE-----LPETIGD-LINLRELDLSNNQIRA  351 (458)
Q Consensus       285 l~~l~-~L~~L~l~~n~l~~l~-----~~l~~l-~~L~~L~L~~n~~~~~~-----l~~~l~~-l~~L~~L~L~~n~l~~  351 (458)
                      +..++ +|++|++++|.+++..     ..+..+ ++|++|+|++|  .++.     ++..+.. .++|++|+|++|.|+.
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            56665 9999999999998743     245566 59999999998  4444     5666655 4699999999999997


Q ss_pred             Cc-----hhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          352 LP-----DTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       352 l~-----~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      .+     ..+..+++|++|++++|.+......
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~  271 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE  271 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence            64     3456789999999999997766554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=7.6e-20  Score=179.52  Aligned_cols=215  Identities=24%  Similarity=0.290  Sum_probs=158.5

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCC-ccc-hhhcCCcccce-eeeecCCCCCC-chhhcCCCCccEE
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLE-AMP-DSIAGLQKLEE-LDVSSNLLQSL-PDSIGLLLNLKVL  224 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~-~l~-~~l~~l~~L~~-L~L~~n~l~~l-~~~l~~l~~L~~L  224 (458)
                      +++++|+|++|.|+.+|. .|..+++|++|+|++|.+. .++ ..|.+++++.+ +.+.+|+++.+ |..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            468888888888888876 5788888888888888874 454 35777777665 55666788877 4567888888888


Q ss_pred             EeeCCCCCCCch-hhcCCCCCcEEEcCC-CCCCcCCchhhccCC-CCCEEeccCCcCccCCccccCCCCCcEEEcc-cCC
Q 012694          225 NVSGNKLNTLPE-SIARCSSLVELDASF-NNLVCLPTNIGYGLL-NLERLSIKLNKLRTFPPSICEMRSLKYLDAH-FNE  300 (458)
Q Consensus       225 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~-~n~  300 (458)
                      ++++|+++.++. .+....++..|++.+ +.+..++...+..+. .++.|++++|+++.++.......+|++|++. +|.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            888888887654 344456677777754 567777776655554 5788888888888887777777788888886 467


Q ss_pred             CCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCC-CCCCCchhhhCCCCCcEEECcC
Q 012694          301 LHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN-QIRALPDTFFRLENLTKLNLDQ  369 (458)
Q Consensus       301 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~L~~  369 (458)
                      ++.+|. .|..+++|++|++++|  .+..+|..  .+.+|+.|.+.++ +++.+| .+..+++|+.+++.+
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N--~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRT--RIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTS--CCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             ccCCCHHHhccCcccchhhcCCC--CcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            777774 5688888888888887  66777653  3566777766655 677776 477788888888864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=8.4e-21  Score=193.00  Aligned_cols=234  Identities=19%  Similarity=0.205  Sum_probs=152.8

Q ss_pred             hccCCCceeEEEecCCCCCcc-ch-hhCCCC----CCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCCC-c
Q 012694          145 EAESGVVVETVDLADRQLKLL-PE-AFGRLR----GLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQSL-P  212 (458)
Q Consensus       145 ~~~~~~~L~~L~l~~~~l~~l-~~-~~~~l~----~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~l-~  212 (458)
                      .+..+++|++|++++|.+... +. .+..+.    +|++|++++|.++     .++..+..+++|++|++++|.++.. +
T Consensus        51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  130 (461)
T 1z7x_W           51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL  130 (461)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence            344567788888888877632 21 222343    5888888888777     3456677788888888888877632 1


Q ss_pred             h----h-hcCCCCccEEEeeCCCCCC-----CchhhcCCCCCcEEEcCCCCCCcCCc-----hhhccCCCCCEEeccCCc
Q 012694          213 D----S-IGLLLNLKVLNVSGNKLNT-----LPESIARCSSLVELDASFNNLVCLPT-----NIGYGLLNLERLSIKLNK  277 (458)
Q Consensus       213 ~----~-l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~  277 (458)
                      .    . ....++|++|++++|+++.     ++..+..+++|++|++++|.++....     ......++|++|++++|.
T Consensus       131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence            1    2 1235578888888887773     34556667788888888887764322     122235578888888887


Q ss_pred             Ccc-----CCccccCCCCCcEEEcccCCCCCc------cccccCCCcccEEEccCCCCCCCc-----cchhhcCCCCCCE
Q 012694          278 LRT-----FPPSICEMRSLKYLDAHFNELHGL------PRAIGKLTRLEVLNLSSNFNDLTE-----LPETIGDLINLRE  341 (458)
Q Consensus       278 l~~-----l~~~l~~l~~L~~L~l~~n~l~~l------~~~l~~l~~L~~L~L~~n~~~~~~-----l~~~l~~l~~L~~  341 (458)
                      ++.     ++..+..+++|++|++++|.+++.      +..+..+++|++|++++|  .++.     ++..+..+++|++
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~  288 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC--GITAKGCGDLCRVLRAKESLKE  288 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCCHHHHHHHHHHHHHCTTCCE
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC--CCCHHHHHHHHHHHhhCCCcce
Confidence            774     456667778888888888877662      222335778888888887  4444     5666677788888


Q ss_pred             EeccCCCCCCC-----chhhh-CCCCCcEEECcCCCCCCCcHHHH
Q 012694          342 LDLSNNQIRAL-----PDTFF-RLENLTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       342 L~L~~n~l~~l-----~~~l~-~l~~L~~L~L~~n~i~~~~~~~~  380 (458)
                      |++++|.|+..     ...+. ..++|++|++++|.++......+
T Consensus       289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            88888877632     12222 23688888888888776544333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=4.2e-20  Score=193.48  Aligned_cols=191  Identities=21%  Similarity=0.263  Sum_probs=166.9

Q ss_pred             eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCC
Q 012694          152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL  231 (458)
Q Consensus       152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l  231 (458)
                      +..+.+..+.+..+.. +..+.+|+.|++++|.+..++ .+..+++|++|+|++|.++.++. +..+++|+.|+|++|.+
T Consensus        23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence            4445566666665543 467789999999999999986 58999999999999999999876 89999999999999999


Q ss_pred             CCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCC
Q 012694          232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKL  311 (458)
Q Consensus       232 ~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l  311 (458)
                      +.++ .+..+++|++|++++|.+..++.  +..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.+++. +..+
T Consensus       100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l  174 (605)
T 1m9s_A          100 KDLS-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGL  174 (605)
T ss_dssp             CCCT-TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred             CCCh-hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccC
Confidence            9886 78899999999999999998753  44799999999999999988 678999999999999999999877 8999


Q ss_pred             CcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc
Q 012694          312 TRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP  353 (458)
Q Consensus       312 ~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~  353 (458)
                      ++|+.|+|++|  .+..++ .+..+++|+.|+|++|.++..|
T Consensus       175 ~~L~~L~Ls~N--~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          175 TKLQNLYLSKN--HISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCCEEECCSS--CCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCCEEECcCC--CCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            99999999998  566774 5889999999999999988664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.5e-19  Score=177.45  Aligned_cols=219  Identities=24%  Similarity=0.265  Sum_probs=177.9

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCC-Cc-hhhcCCCCccE-EEeeC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQS-LP-DSIGLLLNLKV-LNVSG  228 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~-l~-~~l~~l~~L~~-L~l~~  228 (458)
                      +++++++++++.+|..+.  +++++|+|++|+|+.+|. +|.++++|++|+|++|.+.+ +| ..|.++++|+. +.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            578999999999998763  689999999999999985 58999999999999999754 55 46788888765 66678


Q ss_pred             CCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC-CcCccCCc-cccCC-CCCcEEEcccCCCCCc
Q 012694          229 NKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL-NKLRTFPP-SICEM-RSLKYLDAHFNELHGL  304 (458)
Q Consensus       229 n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l-~~L~~L~l~~n~l~~l  304 (458)
                      |+++.++ ..+..+++|++|++++|.++.++...+....++..|++.+ +.+..++. .+..+ ..++.|++++|+|+.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            9999884 5688999999999999999999887776777888999865 57887764 34444 4689999999999999


Q ss_pred             cccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCC-CCCCCc
Q 012694          305 PRAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN-PLVIPP  376 (458)
Q Consensus       305 ~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n-~i~~~~  376 (458)
                      +.......+|+.|++++| +.++.+|. .+..+++|+.|++++|+|+.+|..  .+.+|+.|.+.++ .++..|
T Consensus       170 ~~~~f~~~~L~~l~l~~~-n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDN-NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             CTTSSTTEEEEEEECTTC-TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred             ChhhccccchhHHhhccC-CcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC
Confidence            887777789999999875 47788885 478999999999999999999752  2456666665543 344433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=7.8e-21  Score=193.26  Aligned_cols=225  Identities=22%  Similarity=0.226  Sum_probs=173.7

Q ss_pred             ceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCCcc-----chh-hcCCcccceeeeecCCCCC-----Cchh
Q 012694          151 VVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLEAM-----PDS-IAGLQKLEELDVSSNLLQS-----LPDS  214 (458)
Q Consensus       151 ~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~~l-----~~~-l~~l~~L~~L~L~~n~l~~-----l~~~  214 (458)
                      +|++|++++|.++     .++..+..+++|++|++++|.++..     ... ....++|++|++++|.++.     ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            6999999999998     4577899999999999999998743     122 2235689999999999885     4566


Q ss_pred             hcCCCCccEEEeeCCCCCCC-----chhhc-CCCCCcEEEcCCCCCCcCC----chhhccCCCCCEEeccCCcCccC---
Q 012694          215 IGLLLNLKVLNVSGNKLNTL-----PESIA-RCSSLVELDASFNNLVCLP----TNIGYGLLNLERLSIKLNKLRTF---  281 (458)
Q Consensus       215 l~~l~~L~~L~l~~n~l~~l-----~~~l~-~l~~L~~L~l~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~l---  281 (458)
                      +..+++|++|++++|.++..     ...+. ..++|++|++++|.++...    ...+..+++|++|++++|.++..   
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            77889999999999998742     12222 3669999999999998642    22334789999999999988742   


Q ss_pred             --Ccc-ccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCCc-----cchhhc-CCCCCCEEeccCC
Q 012694          282 --PPS-ICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLTE-----LPETIG-DLINLRELDLSNN  347 (458)
Q Consensus       282 --~~~-l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~-----l~~~l~-~l~~L~~L~L~~n  347 (458)
                        ... ...+++|++|++++|.+++     ++..+..+++|++|++++|  .+..     +...+. ..++|++|++++|
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN--ELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC--CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC--CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence              222 2358899999999999988     6777888999999999998  3332     222222 3369999999999


Q ss_pred             CCCC-----CchhhhCCCCCcEEECcCCCCCCCcH
Q 012694          348 QIRA-----LPDTFFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       348 ~l~~-----l~~~l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                      .++.     ++..+..+++|++|++++|.++....
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            9984     35677888999999999998865433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=9.1e-20  Score=190.97  Aligned_cols=166  Identities=22%  Similarity=0.293  Sum_probs=152.5

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      ++.|+.|++++|.+..++ .+..+++|+.|+|++|.++.+++ +..+++|++|+|++|.++.++ .+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            467999999999999887 58899999999999999999876 999999999999999999986 689999999999999


Q ss_pred             CCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccc
Q 012694          229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI  308 (458)
Q Consensus       229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l  308 (458)
                      |.++.++ .+..+++|+.|++++|.++.+  ..+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.+++++ .+
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HH
Confidence            9999884 688999999999999999988  344589999999999999998866 899999999999999999986 58


Q ss_pred             cCCCcccEEEccCC
Q 012694          309 GKLTRLEVLNLSSN  322 (458)
Q Consensus       309 ~~l~~L~~L~L~~n  322 (458)
                      ..+++|+.|+|++|
T Consensus       194 ~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          194 AGLKNLDVLELFSQ  207 (605)
T ss_dssp             TTCTTCSEEECCSE
T ss_pred             ccCCCCCEEEccCC
Confidence            99999999999998

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=3.6e-20  Score=174.41  Aligned_cols=171  Identities=27%  Similarity=0.372  Sum_probs=122.5

Q ss_pred             CCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCC
Q 012694          172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF  251 (458)
Q Consensus       172 l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~  251 (458)
                      +.++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++.++. +..+++|++|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence            345666777777777776 5677778888888888887776 57777888888888888877765 77777888888888


Q ss_pred             CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccch
Q 012694          252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE  331 (458)
Q Consensus       252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~  331 (458)
                      |.++.++....   ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|++|++++|  .+..+ .
T Consensus        95 N~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N--~i~~~-~  166 (263)
T 1xeu_A           95 NRLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN--EITNT-G  166 (263)
T ss_dssp             SCCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS--CCCBC-T
T ss_pred             CccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC--cCcch-H
Confidence            87777664322   67777777777777664 4667777777777777777765 4667777777777776  44444 4


Q ss_pred             hhcCCCCCCEEeccCCCCCCCc
Q 012694          332 TIGDLINLRELDLSNNQIRALP  353 (458)
Q Consensus       332 ~l~~l~~L~~L~L~~n~l~~l~  353 (458)
                      .+..+++|+.|++++|.++..|
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECCC
T ss_pred             HhccCCCCCEEeCCCCcccCCc
Confidence            5666777777777777766554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=4e-20  Score=174.10  Aligned_cols=163  Identities=25%  Similarity=0.303  Sum_probs=120.6

Q ss_pred             ceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCC
Q 012694          151 VVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       151 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~  230 (458)
                      ++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|+
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence            3556667777777666 4666777888888888777776 57777888888888888777765 7777888888888887


Q ss_pred             CCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccC
Q 012694          231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGK  310 (458)
Q Consensus       231 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~  310 (458)
                      ++.++.. .. ++|++|++++|.++.++.  +..+++|+.|++++|.++.++ .+..+++|++|++++|.++++ ..+..
T Consensus        97 l~~l~~~-~~-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~  170 (263)
T 1xeu_A           97 LKNLNGI-PS-ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTR  170 (263)
T ss_dssp             CSCCTTC-CC-SSCCEEECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred             cCCcCcc-cc-CcccEEEccCCccCCChh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhcc
Confidence            7776543 22 778888888887777653  346777888888888877774 577777888888888887777 55777


Q ss_pred             CCcccEEEccCC
Q 012694          311 LTRLEVLNLSSN  322 (458)
Q Consensus       311 l~~L~~L~L~~n  322 (458)
                      +++|+.|++++|
T Consensus       171 l~~L~~L~l~~N  182 (263)
T 1xeu_A          171 LKKVNWIDLTGQ  182 (263)
T ss_dssp             CCCCCEEEEEEE
T ss_pred             CCCCCEEeCCCC
Confidence            778888888776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=6.3e-19  Score=159.70  Aligned_cols=176  Identities=26%  Similarity=0.316  Sum_probs=92.0

Q ss_pred             EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCC
Q 012694          154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN  232 (458)
Q Consensus       154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~  232 (458)
                      .++++++.++.+|..+  .++|++|++++|.++.++. .+.++++|++|++++|.++.++..                  
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------   70 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------------   70 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------------
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------------
Confidence            4455555555554332  2355555555555554443 244555555555555555544322                  


Q ss_pred             CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCCccc-cccC
Q 012694          233 TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHGLPR-AIGK  310 (458)
Q Consensus       233 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~  310 (458)
                          .+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+++++. .+..
T Consensus        71 ----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           71 ----VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ----hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence                233444444444444444444444444455555555555555544432 4555666666666666666543 3556


Q ss_pred             CCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCC
Q 012694          311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLEN  361 (458)
Q Consensus       311 l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~  361 (458)
                      +++|++|++++|.        ..+.+++|+.|+++.|+++ .+|..++.++.
T Consensus       147 l~~L~~L~l~~N~--------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          147 LTSLQYIWLHDNP--------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTCCEEECCSCC--------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCCccEEEecCCC--------eecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            6666666666651        1234556667777777666 55655555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=1.4e-18  Score=183.15  Aligned_cols=226  Identities=28%  Similarity=0.299  Sum_probs=175.3

Q ss_pred             CCCceeEEEecCCCCCccch--------------------hhCCCCCCcEEEcccCCCCc---cchhhcCCcccceeeee
Q 012694          148 SGVVVETVDLADRQLKLLPE--------------------AFGRLRGLVSLNLSRNLLEA---MPDSIAGLQKLEELDVS  204 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~--------------------~~~~l~~L~~L~l~~n~i~~---l~~~l~~l~~L~~L~L~  204 (458)
                      ....++.|++.++.+..++.                    ....+++|+.|++++|.+..   .+..+..+.+|++|++.
T Consensus       326 ~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~  405 (635)
T 4g8a_A          326 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS  405 (635)
T ss_dssp             SCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred             cchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence            34567777777776554322                    12235566666666666652   23445566677777777


Q ss_pred             cCCCCCCchhhcCCCCccEEEeeCCCCCCC--chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc--c
Q 012694          205 SNLLQSLPDSIGLLLNLKVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR--T  280 (458)
Q Consensus       205 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--~  280 (458)
                      .+.+..++..+..+++|+.+++.++.....  ...+..+++++.++++.|.+..+....+..+++|+.|++++|.+.  .
T Consensus       406 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~  485 (635)
T 4g8a_A          406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  485 (635)
T ss_dssp             SCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence            776666666667778888888877755533  245677899999999999999888888889999999999999754  3


Q ss_pred             CCccccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCC-chhhh
Q 012694          281 FPPSICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRAL-PDTFF  357 (458)
Q Consensus       281 l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~  357 (458)
                      .|..+..+++|++|++++|+++++ |..+.++++|++|+|++|  .+..++ ..+..+++|+.|+|++|+|+.+ |..+.
T Consensus       486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  563 (635)
T 4g8a_A          486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN--NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  563 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred             CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC--cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence            577889999999999999999996 568999999999999998  566664 5688999999999999999977 56788


Q ss_pred             CC-CCCcEEECcCCCCCCC
Q 012694          358 RL-ENLTKLNLDQNPLVIP  375 (458)
Q Consensus       358 ~l-~~L~~L~L~~n~i~~~  375 (458)
                      .+ ++|++|+|++|++.+.
T Consensus       564 ~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          564 HFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCTTCCEEECTTCCBCCS
T ss_pred             hhhCcCCEEEeeCCCCccc
Confidence            87 6899999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.6e-18  Score=155.78  Aligned_cols=148  Identities=18%  Similarity=0.229  Sum_probs=77.5

Q ss_pred             CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC-CchhhcCCCCCcEEEc
Q 012694          171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDA  249 (458)
Q Consensus       171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l  249 (458)
                      .+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++. .+..+..+++|++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            3455666666666666555 4556666666666666555543 45556666666666666553 3445555555555555


Q ss_pred             CCCCCCcCCchhhccCCCCCEEeccCCc-CccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCC
Q 012694          250 SFNNLVCLPTNIGYGLLNLERLSIKLNK-LRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN  322 (458)
Q Consensus       250 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n  322 (458)
                      ++|.++......+..+++|++|++++|. ++.++ .+..+++|++|++++|.+++++ .+..+++|++|++++|
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence            5555554322333344455555555544 44443 3444445555555555554443 3444444444544444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=3.5e-21  Score=200.43  Aligned_cols=193  Identities=21%  Similarity=0.275  Sum_probs=118.7

Q ss_pred             CCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCC-------------CC-CCchhhcCCCCccEEE-eeCCCCCCC
Q 012694          170 GRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNL-------------LQ-SLPDSIGLLLNLKVLN-VSGNKLNTL  234 (458)
Q Consensus       170 ~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~-------------l~-~l~~~l~~l~~L~~L~-l~~n~l~~l  234 (458)
                      ..+++|+.|++++|.++.+|..++++++|++|++++|.             +. .+|..++.+++|+.|+ ++.|.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45677888888888888888888888888888876653             12 2345566667777776 454443322


Q ss_pred             ch------hhcC--CCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccc
Q 012694          235 PE------SIAR--CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR  306 (458)
Q Consensus       235 ~~------~l~~--l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~  306 (458)
                      +.      .+..  ...|+.|++++|.++.+|.  +..+++|+.|++++|.++.+|..++.+++|++|++++|.++++| 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence            21      1111  1246666666666666654  33566666666666666666666666666666666666666665 


Q ss_pred             cccCCCcccEEEccCCCCCCCcc--chhhcCCCCCCEEeccCCCCCCCch----hhhCCCCCcEEEC
Q 012694          307 AIGKLTRLEVLNLSSNFNDLTEL--PETIGDLINLRELDLSNNQIRALPD----TFFRLENLTKLNL  367 (458)
Q Consensus       307 ~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~L  367 (458)
                      .++.+++|+.|+|++|  .+..+  |..++.+++|+.|+|++|.|+.+|+    .+..+++|+.|++
T Consensus       503 ~l~~l~~L~~L~Ls~N--~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 GVANLPRLQELLLCNN--RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGTTCSSCCEEECCSS--CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ccCCCCCCcEEECCCC--CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            5666666666666665  44444  5666666666666666666665542    2233566666643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.5e-18  Score=155.85  Aligned_cols=152  Identities=20%  Similarity=0.271  Sum_probs=94.2

Q ss_pred             cCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEe
Q 012694          193 AGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS  272 (458)
Q Consensus       193 ~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~  272 (458)
                      ..+++|++|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++                        |++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~------------------------L~~L~   94 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSN------------------------LERLR   94 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTT------------------------CCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCC------------------------CCEEE
Confidence            44555666666666666555 4555666666666666554442 3444444                        45555


Q ss_pred             ccCCcCcc-CCccccCCCCCcEEEcccCCCCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC
Q 012694          273 IKLNKLRT-FPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR  350 (458)
Q Consensus       273 L~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~  350 (458)
                      +++|.++. .+..+..+++|++|++++|.+++ .+..+..+++|++|++++|. .+..++ .+..+++|+.|++++|+|+
T Consensus        95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A           95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccH-hhcCCCCCCEEECCCCCCc
Confidence            55554442 34455666677777777777765 44566777777777777762 255555 5677777788888877777


Q ss_pred             CCchhhhCCCCCcEEECcCCCCC
Q 012694          351 ALPDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       351 ~l~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      .++ .+..+++|++|++++|+|.
T Consensus       173 ~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          173 DYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCT-TGGGCSSCCEEEECBC---
T ss_pred             ChH-HhccCCCCCEEEeeCcccC
Confidence            775 6777778888888887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.9e-18  Score=156.57  Aligned_cols=159  Identities=29%  Similarity=0.462  Sum_probs=135.0

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchh-hcCCcccceeeeecCCCCCCch-hhcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDS-IAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~-l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~  225 (458)
                      .+++++|++++|.++.++. .|..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            3579999999999998876 578999999999999999988754 7899999999999999998865 468899999999


Q ss_pred             eeCCCCCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCC-
Q 012694          226 VSGNKLNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG-  303 (458)
Q Consensus       226 l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-  303 (458)
                      +++|+++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+.      +.+++|++|+++.|.+++ 
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCce
Confidence            999999988654 688999999999999999888877778889999999988654      455678888888888886 


Q ss_pred             ccccccCCCc
Q 012694          304 LPRAIGKLTR  313 (458)
Q Consensus       304 l~~~l~~l~~  313 (458)
                      +|..++.++.
T Consensus       181 ip~~~~~l~~  190 (208)
T 2o6s_A          181 VRNSAGSVAP  190 (208)
T ss_dssp             BBCTTSSBCT
T ss_pred             eeccCccccC
Confidence            7766665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.7e-18  Score=170.59  Aligned_cols=153  Identities=27%  Similarity=0.365  Sum_probs=89.4

Q ss_pred             ccEEEeeCCCCCCCchh-hc-CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcc
Q 012694          221 LKVLNVSGNKLNTLPES-IA-RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAH  297 (458)
Q Consensus       221 L~~L~l~~n~l~~l~~~-l~-~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~  297 (458)
                      ++.|++++|+++.++.. +. ++++|++|++++|.++.++...+.++++|+.|++++|.++.++. .+..+++|++|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444444444433322 22 34444444444444444444444445555555555555554432 34555566666666


Q ss_pred             cCCCCCc-cccccCCCcccEEEccCCCCCCCccchhh----cCCCCCCEEeccCCCCCCCc-hhhhCCCC--CcEEECcC
Q 012694          298 FNELHGL-PRAIGKLTRLEVLNLSSNFNDLTELPETI----GDLINLRELDLSNNQIRALP-DTFFRLEN--LTKLNLDQ  369 (458)
Q Consensus       298 ~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l----~~l~~L~~L~L~~n~l~~l~-~~l~~l~~--L~~L~L~~  369 (458)
                      +|.++.+ +..+..+++|+.|+|++|  .+..+|..+    ..+++|+.|+|++|+|+.+| ..+..++.  ++.|+|++
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQN--QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS--CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCC--cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            6666654 345666666666666665  455555443    46788899999999998886 46777776  48899999


Q ss_pred             CCCCCC
Q 012694          370 NPLVIP  375 (458)
Q Consensus       370 n~i~~~  375 (458)
                      |++.+.
T Consensus       199 N~~~C~  204 (361)
T 2xot_A          199 NPLECD  204 (361)
T ss_dssp             SCEECC
T ss_pred             CCccCC
Confidence            999865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1.3e-17  Score=153.48  Aligned_cols=152  Identities=29%  Similarity=0.387  Sum_probs=112.8

Q ss_pred             ccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccC
Q 012694          221 LKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFN  299 (458)
Q Consensus       221 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n  299 (458)
                      .+.++.++++++.+|..+.  ++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4455555555655554432  566666666666666655555566677777777777766653 3567778888888888


Q ss_pred             CCCCccc-cccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCc
Q 012694          300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      .++.++. .+..+++|++|++++|  .+..+|..+..+++|+.|+|++|+|+.++ ..+..+++|+.|++++|++.+..
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS--CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccChhHhCcchhhCeEeccCC--cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            8888764 4678888999999887  66688888888999999999999999886 46888999999999999998654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=1.7e-20  Score=195.34  Aligned_cols=193  Identities=20%  Similarity=0.235  Sum_probs=160.6

Q ss_pred             cCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCC--------------CCccchhhcCCcccceee-eecCCCCCC
Q 012694          147 ESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNL--------------LEAMPDSIAGLQKLEELD-VSSNLLQSL  211 (458)
Q Consensus       147 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~--------------i~~l~~~l~~l~~L~~L~-L~~n~l~~l  211 (458)
                      ...+.|+.|++++|.++.+|..++.+++|+.|++++|.              .+.+|..++.+++|+.|+ ++.|.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34677889999999999999999999999999997763              224466788889999998 666654433


Q ss_pred             ch------hhcC--CCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc
Q 012694          212 PD------SIGL--LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP  283 (458)
Q Consensus       212 ~~------~l~~--l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~  283 (458)
                      +.      .+..  ...|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+| 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp-  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCG-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh-cCCCCCEEECCCCCCCCCc-
Confidence            21      1111  1369999999999999987 9999999999999999999988655 8999999999999999998 


Q ss_pred             cccCCCCCcEEEcccCCCCCc--cccccCCCcccEEEccCCCCCCCccchh----hcCCCCCCEEec
Q 012694          284 SICEMRSLKYLDAHFNELHGL--PRAIGKLTRLEVLNLSSNFNDLTELPET----IGDLINLRELDL  344 (458)
Q Consensus       284 ~l~~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~L~~n~~~~~~l~~~----l~~l~~L~~L~L  344 (458)
                      .++.+++|++|++++|.++++  |..++.+++|+.|+|++|  .+..+|+.    +..+++|+.|++
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N--~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS--GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC--cCCCCccHHHHHHHHCcccCccCC
Confidence            899999999999999999998  889999999999999998  55555543    345889999875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=7.3e-18  Score=154.22  Aligned_cols=147  Identities=28%  Similarity=0.415  Sum_probs=78.2

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~  230 (458)
                      +.++++++.++.+|..+.  ++|+.|++++|.|+.++. .|..+++|++|++++|.|+.+ |..+.++++|++|++++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            345666666666655433  456666666666665543 455566666666666666554 4455555555555555555


Q ss_pred             CCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCC
Q 012694          231 LNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNEL  301 (458)
Q Consensus       231 l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l  301 (458)
                      ++.+|.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            5555433 3445555555555555555544444444555555555555444432 234444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1e-17  Score=153.18  Aligned_cols=150  Identities=25%  Similarity=0.435  Sum_probs=112.8

Q ss_pred             cEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCC
Q 012694          222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNE  300 (458)
Q Consensus       222 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~  300 (458)
                      +.++++++.++.+|..+.  ++|++|++++|.++.++...+..+++|+.|++++|.++.+ +..+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            455556666666655443  4666677777777666665565677777777777777755 5667778888888888888


Q ss_pred             CCCccc-cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          301 LHGLPR-AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       301 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      ++.+|. .+..+++|++|+|++|  .+..+ +..+..+++|+.|+|++|+|+.++ ..+..+++|++|++++|++.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNAN--KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCccCHhHccCCCCCCEEECCCC--CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            888775 4677888888888887  45555 456888999999999999999886 4688899999999999999764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=4.8e-18  Score=167.36  Aligned_cols=169  Identities=27%  Similarity=0.329  Sum_probs=137.6

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh-hc-CCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS-IA-GLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~-l~-~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n  229 (458)
                      +.++++++.++.+|..+.  ..++.|++++|.|+.++.. +. ++++|++|++++|.|+.++ ..+.++++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            578899999998887554  4688999999999887644 55 8899999999999998875 46888999999999999


Q ss_pred             CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccc----cCCCCCcEEEcccCCCCCc
Q 012694          230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSI----CEMRSLKYLDAHFNELHGL  304 (458)
Q Consensus       230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~l~~n~l~~l  304 (458)
                      +++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++|.++.+|..+    ..+++|+.|++++|.|+.+
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            9887754 5788899999999999998887777778889999999999998887654    5688899999999998887


Q ss_pred             c-ccccCCCc--ccEEEccCCC
Q 012694          305 P-RAIGKLTR--LEVLNLSSNF  323 (458)
Q Consensus       305 ~-~~l~~l~~--L~~L~L~~n~  323 (458)
                      | ..+..++.  ++.|+|++|.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSC
T ss_pred             CHHHhhhccHhhcceEEecCCC
Confidence            7 45677776  4788888873

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=152.56  Aligned_cols=150  Identities=28%  Similarity=0.356  Sum_probs=108.0

Q ss_pred             cEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccC
Q 012694          222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFN  299 (458)
Q Consensus       222 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n  299 (458)
                      +.+++++|.++.+|..+.  ..+++|++++|.++.++ ...+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            355555555555554332  23456666666666552 3444566677777777777766554 5677778888888888


Q ss_pred             CCCCccc-cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCC-chhhhCCCCCcEEECcCCCCCCC
Q 012694          300 ELHGLPR-AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       300 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+++++. .+..+++|++|+|++|  .+..+ |..+..+++|+.|+|++|+|+.+ |..+..+++|++|++++|++.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSN--RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTS--CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCC--cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            8887654 5778888888888887  45555 56678889999999999999988 67889999999999999999864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.5e-17  Score=153.12  Aligned_cols=144  Identities=28%  Similarity=0.397  Sum_probs=72.5

Q ss_pred             EEEcccCCCCccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCCCCCCch-hhcCCCCCcEEEcCCCCC
Q 012694          177 SLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNL  254 (458)
Q Consensus       177 ~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l  254 (458)
                      .++++++.++.+|..+.  ++|++|++++|.++.+ |..+.++++|++|++++|+++.++. .+..+++|++|++++|.+
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            34444444444443222  4444555555544444 3344445555555555555544432 234455555555555555


Q ss_pred             CcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccc-cccCCCcccEEEccCC
Q 012694          255 VCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSN  322 (458)
Q Consensus       255 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n  322 (458)
                      +.++...+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            5555444445555555555555555555555555555555555555555442 3455555555555555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=152.57  Aligned_cols=147  Identities=21%  Similarity=0.308  Sum_probs=77.1

Q ss_pred             EEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc--hhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCC
Q 012694          154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP--DSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       154 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~--~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~  230 (458)
                      +++++++.++.+|..+.  ..+++|++++|.|+.++  ..|.++++|++|++++|.|+.++. .+.++++|++|++++|+
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            56666666666655432  24456666666666552  225556666666666666555533 45555555555555555


Q ss_pred             CCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCC
Q 012694          231 LNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       231 l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~  302 (458)
                      ++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            554433 244555555555555555555444444445555555555555444 334444444455555444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=3.1e-18  Score=183.47  Aligned_cols=216  Identities=22%  Similarity=0.217  Sum_probs=103.8

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEE-----cccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEE
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLN-----LSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVL  224 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~-----l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L  224 (458)
                      +.++.|++.++.+...+..+.....|+.+.     +..|.+...+..+..+.+|++|+|++|.+..+|..+..+++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            457777777777776555433333333333     333444444566778888888888888888887777788888888


Q ss_pred             EeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCC-
Q 012694          225 NVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG-  303 (458)
Q Consensus       225 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-  303 (458)
                      +|++|.++.+|..++++++|++|+|++|.|+.+|..+. .+++|++|+|++|.++.+|..++.+++|++|+|++|.+++ 
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            88888888888888888888888888888888776654 7888888888888888888888888888888888888887 


Q ss_pred             ccccccCCC-cccEEEccCCCCCCCccchhhcCCCCCCEEeccCC--------CCCCC-chhhhCCCCCcEEECcCCCCC
Q 012694          304 LPRAIGKLT-RLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN--------QIRAL-PDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       304 l~~~l~~l~-~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n--------~l~~l-~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      +|..+..+. .+..|+|++|.. ...+|.      .|+.|++++|        .+... +..+..+..+....+.+|.+.
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l-~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRP-EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCC-CCCCCC------C-----------------------------------------CCC
T ss_pred             ChHHHhhcchhhhHHhhccCcc-cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            344443332 122366777622 233333      4556666666        22211 123344555666666777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=1.1e-16  Score=139.81  Aligned_cols=132  Identities=23%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             CCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC-CchhhcCCCCCcEEEc
Q 012694          173 RGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDA  249 (458)
Q Consensus       173 ~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l  249 (458)
                      ++|++|++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|+++. +|..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            45555666655555  5555555556666666666665555 445555666666666665554 4444444555555555


Q ss_pred             CCCCCCcCCc-hhhccCCCCCEEeccCCcCccCCc----cccCCCCCcEEEcccCCCCCcc
Q 012694          250 SFNNLVCLPT-NIGYGLLNLERLSIKLNKLRTFPP----SICEMRSLKYLDAHFNELHGLP  305 (458)
Q Consensus       250 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~l~~n~l~~l~  305 (458)
                      ++|.++.++. ..+..+++|+.|++++|.++.++.    .+..+++|++|++++|.+..+|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            5555555442 223345555555555555554443    4455555555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=6.9e-17  Score=141.03  Aligned_cols=136  Identities=24%  Similarity=0.208  Sum_probs=124.5

Q ss_pred             CCCceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC-CchhhcCCCCccEE
Q 012694          148 SGVVVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKVL  224 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L  224 (458)
                      ..++|++|++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.++++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            4578999999999998  8888889999999999999999988 779999999999999999998 77777889999999


Q ss_pred             EeeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCc---hhhccCCCCCEEeccCCcCccCCcc
Q 012694          225 NVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPT---NIGYGLLNLERLSIKLNKLRTFPPS  284 (458)
Q Consensus       225 ~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~l~~~  284 (458)
                      ++++|.++.++  ..+..+++|++|++++|.++.++.   ..+..+++|+.|++++|.+..+|..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999999886  789999999999999999999887   5666899999999999999888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=1.2e-17  Score=175.24  Aligned_cols=230  Identities=17%  Similarity=0.151  Sum_probs=130.5

Q ss_pred             eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc--chhhcCCcccceeeeecCCCC--CCchhhcCCCCccEEEee
Q 012694          152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM--PDSIAGLQKLEELDVSSNLLQ--SLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l--~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~l~  227 (458)
                      |+.|+++++....+|..+..+++|++|++++|.++..  ...+..+++|++|+++ +.+.  .++.....+++|++|+++
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            3333333333334444555556666666666655421  2234556666666666 2222  122333456667777776


Q ss_pred             C-----------CCCCC--CchhhcCCCCCcEEEcCCCCCCcCC-chhhccCCCCCEEecc----CCcCccCC------c
Q 012694          228 G-----------NKLNT--LPESIARCSSLVELDASFNNLVCLP-TNIGYGLLNLERLSIK----LNKLRTFP------P  283 (458)
Q Consensus       228 ~-----------n~l~~--l~~~l~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~L~L~----~n~l~~l~------~  283 (458)
                      +           +.++.  ++.....+++|++|+++.|.++... ..+...+++|+.|+++    .|.++..|      .
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            2           34442  2222344667777777666665322 2223246777777775    45555432      2


Q ss_pred             cccCCCCCcEEEcccCC--CCC--ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCC--Cchhhh
Q 012694          284 SICEMRSLKYLDAHFNE--LHG--LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA--LPDTFF  357 (458)
Q Consensus       284 ~l~~l~~L~~L~l~~n~--l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~--l~~~l~  357 (458)
                      .+..+++|++|++++|.  +++  +......+++|++|++++|......++..+..+++|++|++++|.++.  ++..+.
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            24557778888876543  444  222223477888888887733222345556778888888888888763  344556


Q ss_pred             CCCCCcEEECcCCCCCCCcHHHHhh
Q 012694          358 RLENLTKLNLDQNPLVIPPMEIVNK  382 (458)
Q Consensus       358 ~l~~L~~L~L~~n~i~~~~~~~~~~  382 (458)
                      .+++|++|++++|+++......+..
T Consensus       511 ~l~~L~~L~ls~n~it~~~~~~l~~  535 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTGQDLMQM  535 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred             hcCccCeeECcCCcCCHHHHHHHHH
Confidence            7888888888888887665544433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=7e-17  Score=172.99  Aligned_cols=189  Identities=22%  Similarity=0.229  Sum_probs=116.6

Q ss_pred             CCCcEEEcccCCCCccchhhcCCcccce-----eeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEE
Q 012694          173 RGLVSLNLSRNLLEAMPDSIAGLQKLEE-----LDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVEL  247 (458)
Q Consensus       173 ~~L~~L~l~~n~i~~l~~~l~~l~~L~~-----L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L  247 (458)
                      +.++.|++.+|.+..++..+.....|..     +++++|.+...+..+..+++|+.|+|++|.+..+|..+..+++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            5688899988888877654433333333     33444555555677889999999999999999999888899999999


Q ss_pred             EcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCC
Q 012694          248 DASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLT  327 (458)
Q Consensus       248 ~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~  327 (458)
                      +|++|.++.+|..+. .+++|+.|+|++|.|+.+|..++.+++|++|+|++|.|+.+|..++.+++|++|+|++|  .+.
T Consensus       253 ~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N--~l~  329 (727)
T 4b8c_D          253 YLNGNSLTELPAEIK-NLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN--PLE  329 (727)
T ss_dssp             BCTTSCCSCCCGGGG-GGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS--CCC
T ss_pred             EeeCCcCcccChhhh-CCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC--ccC
Confidence            999999999987664 89999999999999999999999999999999999999999988999999999999998  444


Q ss_pred             -ccchhhcCCC-CCCEEeccCCCCCC-CchhhhCCCCCcEEECcCC
Q 012694          328 -ELPETIGDLI-NLRELDLSNNQIRA-LPDTFFRLENLTKLNLDQN  370 (458)
Q Consensus       328 -~l~~~l~~l~-~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~L~~n  370 (458)
                       .+|..+..+. .+..++|++|.++. +|      ..|..|++++|
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             CCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence             4555554332 22357899998873 34      34556666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=6.2e-16  Score=132.11  Aligned_cols=125  Identities=25%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             CCceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCC-CchhhcCCCCccEEE
Q 012694          149 GVVVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKVLN  225 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~  225 (458)
                      .++++.|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            467888888888887  7777778888888888888888877 667888888888888888887 676667788888888


Q ss_pred             eeCCCCCCCc--hhhcCCCCCcEEEcCCCCCCcCCc---hhhccCCCCCEEecc
Q 012694          226 VSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPT---NIGYGLLNLERLSIK  274 (458)
Q Consensus       226 l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~L~L~  274 (458)
                      +++|+++.++  ..+..+++|++|++++|.++.++.   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888888764  667777888888888887777765   455567777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=4.7e-16  Score=136.88  Aligned_cols=110  Identities=21%  Similarity=0.246  Sum_probs=54.6

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhh-cCCCCccEEEe
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNV  226 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l-~~l~~L~~L~l  226 (458)
                      ...+|+.|++++|.++.++......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ ..+++|++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            34455555555555555433222222555555555555554 34555555555555555555554322 44555555555


Q ss_pred             eCCCCCCCch--hhcCCCCCcEEEcCCCCCCcCC
Q 012694          227 SGNKLNTLPE--SIARCSSLVELDASFNNLVCLP  258 (458)
Q Consensus       227 ~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l~  258 (458)
                      ++|+++.+|.  .+..+++|++|++++|.++.++
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            5555554443  4444445555555555444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=4.1e-16  Score=137.28  Aligned_cols=102  Identities=20%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             CccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc--cccCCCCCcEEEcc
Q 012694          220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP--SICEMRSLKYLDAH  297 (458)
Q Consensus       220 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~  297 (458)
                      +|++|++++|.++.+ ..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.  .+..+++|++|+++
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            444444444444433 233334444444444444444433333334444444444444443333  33444444444444


Q ss_pred             cCCCCCcccc----ccCCCcccEEEccCC
Q 012694          298 FNELHGLPRA----IGKLTRLEVLNLSSN  322 (458)
Q Consensus       298 ~n~l~~l~~~----l~~l~~L~~L~L~~n  322 (458)
                      +|.++.+|..    +..+++|+.|++++|
T Consensus       122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             SSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            4444443332    344444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=8.1e-16  Score=131.37  Aligned_cols=82  Identities=23%  Similarity=0.276  Sum_probs=36.1

Q ss_pred             CCCcEEEcccCCCC--ccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCC-CchhhcCCCCCcEEEc
Q 012694          173 RGLVSLNLSRNLLE--AMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-LPESIARCSSLVELDA  249 (458)
Q Consensus       173 ~~L~~L~l~~n~i~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l  249 (458)
                      ++|+.|++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34444455444444  4444444444444444444444444 334444444444444444443 3333333444444444


Q ss_pred             CCCCCC
Q 012694          250 SFNNLV  255 (458)
Q Consensus       250 ~~n~l~  255 (458)
                      ++|.++
T Consensus        96 s~N~i~  101 (149)
T 2je0_A           96 SGNKIK  101 (149)
T ss_dssp             TTSCCC
T ss_pred             CCCcCC
Confidence            444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=1.3e-16  Score=167.16  Aligned_cols=227  Identities=14%  Similarity=0.090  Sum_probs=150.3

Q ss_pred             CCCceeEEEecCCCCCc-----cchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCCCchhhcC
Q 012694          148 SGVVVETVDLADRQLKL-----LPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQSLPDSIGL  217 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~  217 (458)
                      .+++|++|++++|.++.     ++..+..+++|++|++++|.++     .++..+.++++|++|++++|.+..++..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            35677777777776542     3334456677777777777775     2334456677777777777777777777777


Q ss_pred             CCCccEEEeeCCCCC----CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc--cCCccccCCCCC
Q 012694          218 LLNLKVLNVSGNKLN----TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR--TFPPSICEMRSL  291 (458)
Q Consensus       218 l~~L~~L~l~~n~l~----~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L  291 (458)
                      +++|+.|+++++...    .....+..+++|+.|+++++....++... ..+++|++|++++|.++  .+...+..+++|
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            777777777643211    23345666777777877776555555433 36788888888888765  222345778888


Q ss_pred             cEEEcccCCCCC--ccccccCCCcccEEEccC----------CCCCCC--ccchhhcCCCCCCEEeccCCCCCCC-chhh
Q 012694          292 KYLDAHFNELHG--LPRAIGKLTRLEVLNLSS----------NFNDLT--ELPETIGDLINLRELDLSNNQIRAL-PDTF  356 (458)
Q Consensus       292 ~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~----------n~~~~~--~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l  356 (458)
                      ++|+++ +.+.+  ++.....+++|++|++++          + ..++  .++.....+++|++|+++.|+++.. +..+
T Consensus       321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l  398 (592)
T 3ogk_B          321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE-GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI  398 (592)
T ss_dssp             CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT-CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred             CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc-CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence            888888 44433  444456788899999983          2 1222  2333345688999999988888833 3455


Q ss_pred             hC-CCCCcEEECc----CCCCCCCcH
Q 012694          357 FR-LENLTKLNLD----QNPLVIPPM  377 (458)
Q Consensus       357 ~~-l~~L~~L~L~----~n~i~~~~~  377 (458)
                      .. +++|++|+++    .|.+++.|.
T Consensus       399 ~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          399 GTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             HHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             HhhCCCCcEEEEeecCCCccccCchH
Confidence            54 8899999996    667777653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.1e-15  Score=133.75  Aligned_cols=124  Identities=27%  Similarity=0.380  Sum_probs=69.2

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCCCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNKL  231 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l  231 (458)
                      +.++++++.++.+|..+.  ++|++|++++|.|+.+|..+.++++|++|++++|.|+.++ ..|.++++|++|++++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            355666666666655432  4566666666666666655666666666666666666553 3455556666666666655


Q ss_pred             CCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694          232 NTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL  278 (458)
Q Consensus       232 ~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  278 (458)
                      +.++. .+..+++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            55432 355555555555555555555554444444555555544443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=4.2e-15  Score=132.78  Aligned_cols=126  Identities=23%  Similarity=0.315  Sum_probs=58.1

Q ss_pred             cEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch--hhcCCCCccEEEeeCCCCCCC-chhhcCCCCCcEEEcCCC
Q 012694          176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD--SIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFN  252 (458)
Q Consensus       176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n  252 (458)
                      ++++++++.++.+|..+..  +|++|++++|.++.++.  .+..+++|++|++++|+++.+ |..+.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            3444444444444432221  44444444444444432  144444444444444444433 334444445555555555


Q ss_pred             CCCcCCchhhccCCCCCEEeccCCcCccC-CccccCCCCCcEEEcccCCCCC
Q 012694          253 NLVCLPTNIGYGLLNLERLSIKLNKLRTF-PPSICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~  303 (458)
                      .++.++...+.++++|++|++++|.++.+ |..+..+++|++|++++|.+..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            54444444333444455555555544433 3344455555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=6.8e-15  Score=131.52  Aligned_cols=125  Identities=26%  Similarity=0.420  Sum_probs=75.1

Q ss_pred             cEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCC
Q 012694          176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNL  254 (458)
Q Consensus       176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l  254 (458)
                      ++++++++.++.+|..+.  ++|++|++++|.|+.+|..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            456666666666665432  4666666666666666666666666666666666666554 3456666666666666666


Q ss_pred             CcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCC
Q 012694          255 VCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       255 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~  302 (458)
                      +.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66665555555666666666665555544 2445555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=2.1e-15  Score=146.46  Aligned_cols=98  Identities=21%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             CCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCcc-ccccCCCccc-EEEccCCCCCCCccc-hhhcCCCCCC
Q 012694          265 LLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLP-RAIGKLTRLE-VLNLSSNFNDLTELP-ETIGDLINLR  340 (458)
Q Consensus       265 l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~-~L~L~~n~~~~~~l~-~~l~~l~~L~  340 (458)
                      +++|+.+++++|.++.++. ++.++++|+.|++.+| ++.++ .+|.++++|+ .+++.++   +..++ ..|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccCC
Confidence            5666666666666666654 3556666666666665 55554 3566666666 6666652   34443 3456666666


Q ss_pred             EEeccCCCCCCCc-hhhhCCCCCcEEE
Q 012694          341 ELDLSNNQIRALP-DTFFRLENLTKLN  366 (458)
Q Consensus       341 ~L~L~~n~l~~l~-~~l~~l~~L~~L~  366 (458)
                      .+++++|+++.++ .+|.+|++|+.|+
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhc
Confidence            6666666666664 3566666666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=4.3e-15  Score=132.74  Aligned_cols=125  Identities=22%  Similarity=0.293  Sum_probs=113.3

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchh--hcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDS--IAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~--l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n  229 (458)
                      ++++++++.++.+|..+..  +|++|++++|.|+.++..  ++.+++|++|++++|.|+.+ |..+.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            6899999999999986654  999999999999988753  89999999999999999988 678999999999999999


Q ss_pred             CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc
Q 012694          230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR  279 (458)
Q Consensus       230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  279 (458)
                      +++.++. .+.++++|++|++++|.++.+....+..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9997764 4888999999999999999887777778999999999999887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=1.6e-16  Score=166.64  Aligned_cols=226  Identities=17%  Similarity=0.134  Sum_probs=118.0

Q ss_pred             CCceeEEEecCCCCCc-cchhhC-CCCCCcEEEcccC-CCCc--cchhhcCCcccceeeeecCCCCCC-----chhhcCC
Q 012694          149 GVVVETVDLADRQLKL-LPEAFG-RLRGLVSLNLSRN-LLEA--MPDSIAGLQKLEELDVSSNLLQSL-----PDSIGLL  218 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~-l~~~~~-~l~~L~~L~l~~n-~i~~--l~~~l~~l~~L~~L~L~~n~l~~l-----~~~l~~l  218 (458)
                      +++|++|+++++.++. .+..+. .+++|++|++++| .++.  ++..+.++++|++|++++|.++..     +.....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            3456666666665542 122232 3556666666665 4442  333344566666666666654431     1222345


Q ss_pred             CCccEEEeeCCC--CC--CCchhhcCCCCCcEEEcCCC-CCCcCCchhhccCCCCCEEeccCC-----------------
Q 012694          219 LNLKVLNVSGNK--LN--TLPESIARCSSLVELDASFN-NLVCLPTNIGYGLLNLERLSIKLN-----------------  276 (458)
Q Consensus       219 ~~L~~L~l~~n~--l~--~l~~~l~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~L~L~~n-----------------  276 (458)
                      ++|++|++++|.  ++  .++..+..+++|++|++++| .++.++. ....+++|+.|+++.+                 
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            566666666554  21  11122233566666666655 2223222 2224455555543322                 


Q ss_pred             --------------cCccCCccccCCCCCcEEEcccCCCCC--ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCC
Q 012694          277 --------------KLRTFPPSICEMRSLKYLDAHFNELHG--LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLR  340 (458)
Q Consensus       277 --------------~l~~l~~~l~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~  340 (458)
                                    ....++..+..+++|++|++++|.+++  +...+..+++|++|++++| .....++.....+++|+
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence                          222333334456778888888887665  3344567788888888876 22223333334577888


Q ss_pred             EEeccC---------CCCCCC--chhhhCCCCCcEEECcCCCCCCCc
Q 012694          341 ELDLSN---------NQIRAL--PDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       341 ~L~L~~---------n~l~~l--~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +|++++         +.++..  ......+++|++|.+..|.++...
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~  388 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA  388 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence            888733         345422  122234788888887777776433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=1.1e-16  Score=143.76  Aligned_cols=126  Identities=25%  Similarity=0.294  Sum_probs=81.8

Q ss_pred             eeEEEecCC--CCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          152 VETVDLADR--QLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       152 L~~L~l~~~--~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ++...+.+.  .++.+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++|
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence            445555544  45556666777777777777777777776 677777777777777777777666666677777777777


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLR  279 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~  279 (458)
                      +++.+| .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+.
T Consensus       104 ~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            777665 46666666666666666665543 23335555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=1.4e-14  Score=140.57  Aligned_cols=191  Identities=16%  Similarity=0.216  Sum_probs=149.7

Q ss_pred             CCceeEEEecCCCCC--------------------ccch-hhCC--------CCCCcEEEcccCCCCccc-hhhcCCccc
Q 012694          149 GVVVETVDLADRQLK--------------------LLPE-AFGR--------LRGLVSLNLSRNLLEAMP-DSIAGLQKL  198 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~--------------------~l~~-~~~~--------l~~L~~L~l~~n~i~~l~-~~l~~l~~L  198 (458)
                      .++|+.|+|++|.+.                    .+|+ +|..        |++|+.|++.+ .++.|+ .+|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            578999999999888                    3443 6777        89999999988 888886 458999999


Q ss_pred             ceeeeecCCCCCCc-hhhcCCCCccEEEeeCCC-------CC--------------------CCch--------------
Q 012694          199 EELDVSSNLLQSLP-DSIGLLLNLKVLNVSGNK-------LN--------------------TLPE--------------  236 (458)
Q Consensus       199 ~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~-------l~--------------------~l~~--------------  236 (458)
                      +.|++++|.+..++ .+|..+.++..+....+.       +.                    .++.              
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            99999999887764 456666666665544310       00                    0000              


Q ss_pred             -------------hh-cCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCc-EEEcccCC
Q 012694          237 -------------SI-ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLK-YLDAHFNE  300 (458)
Q Consensus       237 -------------~l-~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~-~L~l~~n~  300 (458)
                                   .+ ..+++|+.+++++|+++.++...|.++.+|+.+++.+| ++.++. ++.++++|+ .+++.. .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                         00 13789999999999999999999999999999999998 777764 688999999 999988 7


Q ss_pred             CCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEec
Q 012694          301 LHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDL  344 (458)
Q Consensus       301 l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L  344 (458)
                      ++.++ .+|.+|++|+.+++++|  .+..++. .|.++++|+.++.
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n--~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGD--KITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSS--CCCEECTTTTCTTCCCCEEEC
T ss_pred             ceEEchhhhhCCccCCEEEeCCC--ccCccchhhhcCCcchhhhcc
Confidence            88876 68999999999999876  6777765 6889999998864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=8.6e-16  Score=160.96  Aligned_cols=226  Identities=17%  Similarity=0.168  Sum_probs=139.4

Q ss_pred             ccCCCceeEE-EecCCCCCccchhhCCCCCCcEEEcccCCCCc--cchhhcCCcccceeeeecCCCCC--CchhhcCCCC
Q 012694          146 AESGVVVETV-DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQS--LPDSIGLLLN  220 (458)
Q Consensus       146 ~~~~~~L~~L-~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~--l~~~l~~l~~L~~L~L~~n~l~~--l~~~l~~l~~  220 (458)
                      +..+++|+.| .+.+.....++..+..+++|++|++++|.++.  +...+..+++|++|++++| ++.  ++.....+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            3445555555 34333333455444567788888888887663  2333567888888888877 431  2222345788


Q ss_pred             ccEEEeeC---------CCCCC--CchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEecc--C----CcCccCC
Q 012694          221 LKVLNVSG---------NKLNT--LPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIK--L----NKLRTFP  282 (458)
Q Consensus       221 L~~L~l~~---------n~l~~--l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~--~----n~l~~l~  282 (458)
                      |++|++.+         +.++.  +......+++|++|.++.|.++.... .+...+++|+.|+++  +    +.++..|
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            88888843         34442  11112347888888887777764332 233357888888888  3    4555332


Q ss_pred             ------ccccCCCCCcEEEcccCCCCC-ccccccC-CCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCC--
Q 012694          283 ------PSICEMRSLKYLDAHFNELHG-LPRAIGK-LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRAL--  352 (458)
Q Consensus       283 ------~~l~~l~~L~~L~l~~n~l~~-l~~~l~~-l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l--  352 (458)
                            ..+..+++|++|++++ .+++ ....+.. +++|+.|++++|......+......+++|+.|++++|.++..  
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence                  2255678888888876 5555 2233433 788888988887322122222225688899999998888632  


Q ss_pred             chhhhCCCCCcEEECcCCCCC
Q 012694          353 PDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       353 ~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      ...+..+++|++|++++|+++
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhCCCCCEEeeeCCCCC
Confidence            224455788899999888873

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7.2e-14  Score=122.88  Aligned_cols=124  Identities=28%  Similarity=0.435  Sum_probs=58.8

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~  230 (458)
                      +.++++++.++.+|..+.  ++|++|++++|.++.++. .++.+++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            345555555555553322  455555555555555443 24555555555555555554433 23445555555555555


Q ss_pred             CCCCchh-hcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694          231 LNTLPES-IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL  278 (458)
Q Consensus       231 l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  278 (458)
                      ++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            5444332 34444444444444444444443333344444444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=8.8e-14  Score=122.31  Aligned_cols=127  Identities=27%  Similarity=0.374  Sum_probs=72.3

Q ss_pred             CcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcCCC
Q 012694          175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFN  252 (458)
Q Consensus       175 L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n  252 (458)
                      .+.++++++.++.+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|+++.++.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4566666666666654332  466666666666666543 345566666666666666655433 455666666666666


Q ss_pred             CCCcCCchhhccCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEcccCCCCC
Q 012694          253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS-ICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~  303 (458)
                      .++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66655555444555555555555555555443 2445555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=3.7e-16  Score=140.37  Aligned_cols=139  Identities=26%  Similarity=0.314  Sum_probs=97.6

Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      .++.+|..+..+++|++|++++|.++.++  .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++++| .+.
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~  112 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE  112 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence            34455556666667777777777666665  333667777777777777777766666777888888888887776 477


Q ss_pred             CCCcccEEEccCCCCCCCccch--hhcCCCCCCEEeccCCCCCCCc-----------hhhhCCCCCcEEECcCCCCCCC
Q 012694          310 KLTRLEVLNLSSNFNDLTELPE--TIGDLINLRELDLSNNQIRALP-----------DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       310 ~l~~L~~L~L~~n~~~~~~l~~--~l~~l~~L~~L~L~~n~l~~l~-----------~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+++|++|++++|  .+..++.  .+..+++|+.|++++|.++..+           ..+..+++|+.|+  +|+++..
T Consensus       113 ~l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          113 KLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             HHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred             cCCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence            7778888888877  4555543  5777888888888888776442           1377889999886  6766643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=4.5e-13  Score=133.36  Aligned_cols=217  Identities=12%  Similarity=0.161  Sum_probs=166.2

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l  226 (458)
                      ..+|+.+.+..+ ++.++. +|..+ +|+.+.+.+ .++.++ .+|.+|.+|+.+++.+|.++.++.....+.+|+.+.+
T Consensus       134 ~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          134 NSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred             cCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence            346888888766 666655 56664 688888876 677775 4688899999999998888888765444688999988


Q ss_pred             eCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCC--
Q 012694          227 SGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELH--  302 (458)
Q Consensus       227 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~--  302 (458)
                      ..+ ++.++ .+|.++++|+.+++..+ ++.++...|.+ .+|+.+.+. +.++.++ .++.++++|+.+++.+|.+.  
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            754 66664 46778889999999864 78888888866 789999884 4566664 56788999999999888776  


Q ss_pred             ---Ccc-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCCc
Q 012694          303 ---GLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       303 ---~l~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                         .++ ..|..|++|+.+.+.++   +..++ ..|.++.+|+.+.|..+ ++.+. .+|.+| +|+.+++.+|.+...+
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             cccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence               344 57889999999999864   55564 35788899999999655 77774 578888 9999999998776554


Q ss_pred             H
Q 012694          377 M  377 (458)
Q Consensus       377 ~  377 (458)
                      .
T Consensus       362 ~  362 (401)
T 4fdw_A          362 E  362 (401)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=1.2e-12  Score=130.21  Aligned_cols=212  Identities=14%  Similarity=0.223  Sum_probs=171.5

Q ss_pred             CCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEe
Q 012694          149 GVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNV  226 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l  226 (458)
                      ..+|+.+.+.+ .++.++. +|..|.+|+.+++.+|.++.++...-.+.+|+.+.+..+ ++.++ .+|.++++|+.+++
T Consensus       156 ~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          156 NSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             TCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            35699999986 6777764 899999999999999999999865333689999999854 77774 57889999999999


Q ss_pred             eCCCCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-----cCC-ccccCCCCCcEEEcccC
Q 012694          227 SGNKLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-----TFP-PSICEMRSLKYLDAHFN  299 (458)
Q Consensus       227 ~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-----~l~-~~l~~l~~L~~L~l~~n  299 (458)
                      ..+ ++.++. +|.+ .+|+.+.+ .+.++.++...|.++++|+.+.+.++.+.     .++ .++.++++|+.+.+. +
T Consensus       234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~  309 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E  309 (401)
T ss_dssp             CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred             CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence            875 666654 4555 79999999 56689999999999999999999988765     343 568899999999998 5


Q ss_pred             CCCCcc-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCC-CCcEEECcCC
Q 012694          300 ELHGLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLE-NLTKLNLDQN  370 (458)
Q Consensus       300 ~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~-~L~~L~L~~n  370 (458)
                      .++.++ .+|.+|++|+.+.|..|   +..+. ..|.++ +|+.+++.+|.+..++ ..+.+++ +++.|++..+
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~---l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN---VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT---CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc---ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            588876 48899999999999875   45554 457788 9999999999988774 4666674 7888888654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2e-12  Score=113.43  Aligned_cols=101  Identities=25%  Similarity=0.350  Sum_probs=45.6

Q ss_pred             cEEEcccCCCCccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcCCCC
Q 012694          176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDASFNN  253 (458)
Q Consensus       176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~  253 (458)
                      +.+++++|.++.+|..+.  ++|++|++++|.|+.+ |..+.++++|++|++++|+++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555555555544332  4455555555555544 33444444444444444444444432 2344444444444444


Q ss_pred             CCcCCchhhccCCCCCEEeccCCcC
Q 012694          254 LVCLPTNIGYGLLNLERLSIKLNKL  278 (458)
Q Consensus       254 l~~l~~~~~~~l~~L~~L~L~~n~l  278 (458)
                      ++.++...+..+++|+.|++++|.+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCc
Confidence            4444433333344444444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=2.3e-12  Score=112.47  Aligned_cols=102  Identities=28%  Similarity=0.385  Sum_probs=45.2

Q ss_pred             eeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694          200 ELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL  278 (458)
Q Consensus       200 ~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  278 (458)
                      ++++++|.++.+|..+.  ++|++|++++|+++.+ |..+.++++|++|++++|.++.++...+..+++|+.|++++|.+
T Consensus        13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            34444444444433321  3444444444444433 22344444444444444444444444444444444444444444


Q ss_pred             ccCCc-cccCCCCCcEEEcccCCCCC
Q 012694          279 RTFPP-SICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       279 ~~l~~-~l~~l~~L~~L~l~~n~l~~  303 (458)
                      +.++. .+..+++|++|++++|.++.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            44433 24444555555555554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=2.8e-12  Score=112.40  Aligned_cols=102  Identities=24%  Similarity=0.358  Sum_probs=51.5

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCchh-hcCCCCccEEEeeCCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPDS-IGLLLNLKVLNVSGNK  230 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~l~~n~  230 (458)
                      +.++++++.++.+|..+.  ++|++|++++|.|+.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            345555555555554332  4555555555555544 23455555555555555555555432 3455555555555555


Q ss_pred             CCCCchh-hcCCCCCcEEEcCCCCCCc
Q 012694          231 LNTLPES-IARCSSLVELDASFNNLVC  256 (458)
Q Consensus       231 l~~l~~~-l~~l~~L~~L~l~~n~l~~  256 (458)
                      ++.+|.. +..+++|++|++++|.+..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccc
Confidence            5555433 4445555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=3.2e-12  Score=111.65  Aligned_cols=101  Identities=26%  Similarity=0.354  Sum_probs=46.9

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCcc-chhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAM-PDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNK  230 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~  230 (458)
                      +.++++++.++.+|..+.  ++|++|++++|.|+.+ +..|.++++|++|++++|+|+.++. .+..+++|++|++++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            345555555555544332  4455555555555544 2334445555555555555544433 23444444444444444


Q ss_pred             CCCCch-hhcCCCCCcEEEcCCCCCC
Q 012694          231 LNTLPE-SIARCSSLVELDASFNNLV  255 (458)
Q Consensus       231 l~~l~~-~l~~l~~L~~L~l~~n~l~  255 (458)
                      ++.++. .+..+++|++|++++|.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            444433 2444444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=3.5e-13  Score=132.86  Aligned_cols=177  Identities=15%  Similarity=0.152  Sum_probs=125.4

Q ss_pred             CcccceeeeecCCCCCC-----chhhc-CCCCccEEEeeCCCCCCC--chhhcCCCCCcEEEcCCCCCCcCCchhh----
Q 012694          195 LQKLEELDVSSNLLQSL-----PDSIG-LLLNLKVLNVSGNKLNTL--PESIARCSSLVELDASFNNLVCLPTNIG----  262 (458)
Q Consensus       195 l~~L~~L~L~~n~l~~l-----~~~l~-~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l~~~~~----  262 (458)
                      +++|++|++++|.++..     ...+. ..++|+.|++++|.++..  ..-...+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46799999999999853     23333 337999999999998732  1222335689999999999975433222    


Q ss_pred             -ccCCCCCEEeccCCcCcc-----CCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCCc---
Q 012694          263 -YGLLNLERLSIKLNKLRT-----FPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLTE---  328 (458)
Q Consensus       263 -~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~---  328 (458)
                       ...++|++|++++|.++.     ++..+..+++|++|++++|.+++     +...+..+++|++|+|++|  .++.   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N--~i~~~g~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN--GAGDTAA  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS--CCCHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC--CCCHHHH
Confidence             346889999999999873     55566788999999999999986     3566788889999999998  4443   


Q ss_pred             --cchhhcCCCCCCEEeccCCCCCCCc-hhhhCC---C--CCcEEE--CcCCCCC
Q 012694          329 --LPETIGDLINLRELDLSNNQIRALP-DTFFRL---E--NLTKLN--LDQNPLV  373 (458)
Q Consensus       329 --l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l---~--~L~~L~--L~~n~i~  373 (458)
                        +...+...++|++|+|++|.|+... ..+..+   .  .|+.+.  +.+|.+.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence              3445667789999999999998442 233332   2  166666  5555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=7.6e-13  Score=130.44  Aligned_cols=152  Identities=22%  Similarity=0.246  Sum_probs=115.0

Q ss_pred             CCCCcEEEcccCCCCcc-----chhhc-CCcccceeeeecCCCCCC--chhhcCCCCccEEEeeCCCCCCC-----chhh
Q 012694          172 LRGLVSLNLSRNLLEAM-----PDSIA-GLQKLEELDVSSNLLQSL--PDSIGLLLNLKVLNVSGNKLNTL-----PESI  238 (458)
Q Consensus       172 l~~L~~L~l~~n~i~~l-----~~~l~-~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~L~l~~n~l~~l-----~~~l  238 (458)
                      +++|++|++++|.++..     ...+. ...+|++|+|++|.++..  ......+++|++|++++|.++..     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35799999999999843     23333 237999999999998742  22223456899999999999743     2333


Q ss_pred             -cCCCCCcEEEcCCCCCCcCCch----hhccCCCCCEEeccCCcCcc-----CCccccCCCCCcEEEcccCCCCC-----
Q 012694          239 -ARCSSLVELDASFNNLVCLPTN----IGYGLLNLERLSIKLNKLRT-----FPPSICEMRSLKYLDAHFNELHG-----  303 (458)
Q Consensus       239 -~~l~~L~~L~l~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----  303 (458)
                       ...++|++|++++|.++.....    ....+++|++|++++|.++.     ++..+...++|++|++++|.|++     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3468999999999998753321    12368899999999999873     45667788899999999999986     


Q ss_pred             ccccccCCCcccEEEccCCC
Q 012694          304 LPRAIGKLTRLEVLNLSSNF  323 (458)
Q Consensus       304 l~~~l~~l~~L~~L~L~~n~  323 (458)
                      +...+..+++|++|+|++|.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHhCCCCCEEeccCCC
Confidence            44566778999999999984

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.2e-10  Score=113.43  Aligned_cols=102  Identities=25%  Similarity=0.285  Sum_probs=83.1

Q ss_pred             EEEecCC-CCCccchhhCCCCCCcEEEccc-CCCCccc-hhhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEeeCC
Q 012694          154 TVDLADR-QLKLLPEAFGRLRGLVSLNLSR-NLLEAMP-DSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       154 ~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~-n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n  229 (458)
                      .++++++ .++.+|. +..+.+|++|+|++ |.|+.++ ..|+++++|++|+|++|+|+.++ ..|.++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4688887 8888888 88888899999986 8888886 46888999999999999988774 46788899999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVC  256 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~  256 (458)
                      +|+.+|..+.....|+.|++.+|.+..
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccC
Confidence            988887655444448888888888774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.8e-10  Score=112.18  Aligned_cols=104  Identities=26%  Similarity=0.337  Sum_probs=89.1

Q ss_pred             cEEEcccC-CCCccchhhcCCcccceeeeec-CCCCCCc-hhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCC
Q 012694          176 VSLNLSRN-LLEAMPDSIAGLQKLEELDVSS-NLLQSLP-DSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASF  251 (458)
Q Consensus       176 ~~L~l~~n-~i~~l~~~l~~l~~L~~L~L~~-n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~  251 (458)
                      ..++++++ .++.+|. +..+.+|++|+|++ |.|+.++ ..|.++++|++|+|++|+|+.++ ..|.++++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35688888 8999998 99999999999996 9999886 57889999999999999999775 4678899999999999


Q ss_pred             CCCCcCCchhhccCCCCCEEeccCCcCccC
Q 012694          252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTF  281 (458)
Q Consensus       252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l  281 (458)
                      |.|+.++...+..+. |+.|++.+|.+...
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            999999988875555 99999999988743

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.93  E-value=1.7e-09  Score=105.74  Aligned_cols=199  Identities=16%  Similarity=0.195  Sum_probs=92.5

Q ss_pred             CCceeEEEecCCCCC---------ccchhhCCCCCCcEEEcccCCCC----------ccchhhcCCcccceeeeecCCCC
Q 012694          149 GVVVETVDLADRQLK---------LLPEAFGRLRGLVSLNLSRNLLE----------AMPDSIAGLQKLEELDVSSNLLQ  209 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~---------~l~~~~~~l~~L~~L~l~~n~i~----------~l~~~l~~l~~L~~L~L~~n~l~  209 (458)
                      ...++.|.+......         .+..++.++++|+.|.+.+....          .+...+..+++|+.|++++|.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            345667776654432         11223445677777777554221          23334455566666666555211


Q ss_pred             CCchhhcCCCCccEEEeeCCCCCCC-chhhc--CCCCCcEEEcCCC--CCCcCCchhhccCCCCCEEeccCCcCccCCcc
Q 012694          210 SLPDSIGLLLNLKVLNVSGNKLNTL-PESIA--RCSSLVELDASFN--NLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS  284 (458)
Q Consensus       210 ~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~--~l~~L~~L~l~~n--~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~  284 (458)
                      .++. +. +++|++|++..|.++.- ...+.  .+++|++|+++.+  ....                  ...+..+...
T Consensus       186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~------------------~~~~~~l~~~  245 (362)
T 2ra8_A          186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF------------------DGDMNVFRPL  245 (362)
T ss_dssp             BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC------------------CSCGGGTGGG
T ss_pred             eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc------------------chhHHHHHHH
Confidence            2222 22 45566666655554411 11121  3455555554321  1000                  0001111111


Q ss_pred             c--cCCCCCcEEEcccCCCCC-ccccc---cCCCcccEEEccCCCCCCCc-----cchhhcCCCCCCEEeccCCCCCCC-
Q 012694          285 I--CEMRSLKYLDAHFNELHG-LPRAI---GKLTRLEVLNLSSNFNDLTE-----LPETIGDLINLRELDLSNNQIRAL-  352 (458)
Q Consensus       285 l--~~l~~L~~L~l~~n~l~~-l~~~l---~~l~~L~~L~L~~n~~~~~~-----l~~~l~~l~~L~~L~L~~n~l~~l-  352 (458)
                      +  ..+++|++|++++|.+.+ .+..+   ..+++|++|+|+.|  .++.     ++..+..+++|+.|++++|.|+.- 
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n--~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG--VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS--CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC--CCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            1  235666666666666654 11111   24566777777665  2322     223334456777777777776622 


Q ss_pred             chhhhC-CCCCcEEECcCCC
Q 012694          353 PDTFFR-LENLTKLNLDQNP  371 (458)
Q Consensus       353 ~~~l~~-l~~L~~L~L~~n~  371 (458)
                      -..+.. +  ...++++++.
T Consensus       324 ~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHc--CCEEEecCCc
Confidence            122322 2  3456776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=1.2e-09  Score=106.76  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=47.7

Q ss_pred             CCCcccEEEccCCCCCCCccchhh---cCCCCCCEEeccCCCCCC-----CchhhhCCCCCcEEECcCCCCCC
Q 012694          310 KLTRLEVLNLSSNFNDLTELPETI---GDLINLRELDLSNNQIRA-----LPDTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       310 ~l~~L~~L~L~~n~~~~~~l~~~l---~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      .+++|++|+|.+|... ...+..+   ..+++|++|+|+.|.|+.     ++..+..+++|+.|+|++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~-~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQ-NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTH-HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCc-hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            5799999999987322 1112222   357899999999999985     34455678999999999998874

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.90  E-value=3e-08  Score=98.29  Aligned_cols=105  Identities=10%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             hhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccc-hhhcCCCC
Q 012694          261 IGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLIN  338 (458)
Q Consensus       261 ~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~  338 (458)
                      .|.++.+|+.+.+..+...--..++.++++|+.+.+. +.++.++ .+|.++.+|+.+.|..+   +..+. ..|.++.+
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG---ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTT
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---ccEehHhHhhCCCC
Confidence            3444455555555433222122344556666666664 3455554 36777788888888764   44443 35677888


Q ss_pred             CCEEeccCCCCCCCc-hhhhCCCCCcEEECcCC
Q 012694          339 LRELDLSNNQIRALP-DTFFRLENLTKLNLDQN  370 (458)
Q Consensus       339 L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n  370 (458)
                      |+.+.+..+ ++.+. .+|.+|.+|+.+++.++
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            888888644 66664 57788888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.81  E-value=4.8e-08  Score=96.82  Aligned_cols=123  Identities=15%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             cCCCceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCC------------C----
Q 012694          147 ESGVVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNL------------L----  208 (458)
Q Consensus       147 ~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~------------l----  208 (458)
                      ..+.+|+.+.+..+ ++.+.+ +|..|.+|+.+++..+ ++.++ .+|.++.+|+.+.+..+-            +    
T Consensus        68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred             hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence            35688999999754 777755 7888999999999754 66564 357777777766654321            0    


Q ss_pred             -----CCC-chhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEec
Q 012694          209 -----QSL-PDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI  273 (458)
Q Consensus       209 -----~~l-~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L  273 (458)
                           ..+ ..+|.++.+|+.+.+.++. ..++ ..+.++.+|+.+.+..+ ++.+....+.++..|+.+.+
T Consensus       146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          146 IPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             cCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence                 111 1346667778888776542 3332 34556666776666544 44444444444444444433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=4e-09  Score=93.10  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=75.0

Q ss_pred             ccCCCceeEEEecCC-CCC-----ccchhhCCCCCCcEEEcccCCCCc-----cchhhcCCcccceeeeecCCCCC----
Q 012694          146 AESGVVVETVDLADR-QLK-----LLPEAFGRLRGLVSLNLSRNLLEA-----MPDSIAGLQKLEELDVSSNLLQS----  210 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~~----  210 (458)
                      +...+.|++|++++| .+.     .+...+...++|++|+|++|.|+.     +...+...++|++|+|++|.|+.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344677888888888 776     344566777788888888888773     34556666778888888887774    


Q ss_pred             -CchhhcCCCCccEEEe--eCCCCCC-----CchhhcCCCCCcEEEcCCCCCC
Q 012694          211 -LPDSIGLLLNLKVLNV--SGNKLNT-----LPESIARCSSLVELDASFNNLV  255 (458)
Q Consensus       211 -l~~~l~~l~~L~~L~l--~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~  255 (458)
                       +...+...++|++|++  ++|.++.     +...+...++|++|++++|.++
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             3455666677777777  6677762     3445555667777777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.80  E-value=4.9e-08  Score=96.71  Aligned_cols=126  Identities=15%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc-ccccCCCccc
Q 012694          237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLE  315 (458)
Q Consensus       237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~  315 (458)
                      .+..+..|+.+.+..+ ...+....+..+..++.+....+.+..  ..+..+.+|+.+.+..+ ++.++ .+|.++.+|+
T Consensus       248 ~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~  323 (394)
T 4fs7_A          248 VFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV  323 (394)
T ss_dssp             TTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             cccccccceeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCC
Confidence            3455566666666544 334445555556666666555443221  24566778888887654 55554 4678888888


Q ss_pred             EEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCC
Q 012694          316 VLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQN  370 (458)
Q Consensus       316 ~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n  370 (458)
                      .+++..+   +..+. ..|.++.+|+.+++..+ ++.+. .+|.+|++|+.+++..+
T Consensus       324 ~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          324 SIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            8888764   45554 35778888888888766 77664 57888888988888643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=5.3e-09  Score=92.36  Aligned_cols=109  Identities=16%  Similarity=0.152  Sum_probs=74.4

Q ss_pred             CCCCCEEeccCC-cCc-----cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCC---ccc
Q 012694          265 LLNLERLSIKLN-KLR-----TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLT---ELP  330 (458)
Q Consensus       265 l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~---~l~  330 (458)
                      .++|++|++++| .+.     .+...+...++|++|++++|.+.+     +...+...++|++|+|++|.++..   .+.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            444444455444 443     233455666778888888887765     345566677888888888733221   144


Q ss_pred             hhhcCCCCCCEEec--cCCCCCC-----CchhhhCCCCCcEEECcCCCCC
Q 012694          331 ETIGDLINLRELDL--SNNQIRA-----LPDTFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       331 ~~l~~l~~L~~L~L--~~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~  373 (458)
                      ..+...++|++|+|  ++|.|+.     +...+...++|++|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56677788999999  7898883     4466777899999999999875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.51  E-value=2.5e-06  Score=84.30  Aligned_cols=128  Identities=16%  Similarity=0.269  Sum_probs=92.2

Q ss_pred             hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCCCcc-ccccCCCcc
Q 012694          237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGLP-RAIGKLTRL  314 (458)
Q Consensus       237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L  314 (458)
                      ++.++..|+.+.+..+ +..+....+.++.+|+.+.+. +.++.+++ ++.++.+|+.+.+..+ ++.+. .+|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            5667888999988754 556778888899999999996 45666654 6788999999999754 66665 478999999


Q ss_pred             cEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCC
Q 012694          315 EVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL  372 (458)
Q Consensus       315 ~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i  372 (458)
                      +.+.+..+   +..+. ..|.++.+|+.+++.++...  ...+..+.+|+.+.+..+.+
T Consensus       337 ~~i~ip~s---v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          337 ERIAIPSS---VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEECTT---CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred             CEEEECcc---cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence            99999875   45554 46889999999999987432  14567788999998876654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.31  E-value=2.8e-05  Score=76.18  Aligned_cols=80  Identities=20%  Similarity=0.299  Sum_probs=41.2

Q ss_pred             ccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCCc-hhhhCCCC
Q 012694          285 ICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRALP-DTFFRLEN  361 (458)
Q Consensus       285 l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~  361 (458)
                      +.++..|+.+.+..+ ++.+. .++..+.+|+.+.+..+   +..++. .+.++.+|+.+.+.++.++.++ .+|.+|.+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~---i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK---VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC---CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc---ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            344455555555433 33332 24455555666655542   333322 3455666666666666666553 45566666


Q ss_pred             CcEEECc
Q 012694          362 LTKLNLD  368 (458)
Q Consensus       362 L~~L~L~  368 (458)
                      |+.+.|.
T Consensus       312 L~~i~lp  318 (379)
T 4h09_A          312 LSSVTLP  318 (379)
T ss_dssp             CCEEECC
T ss_pred             CCEEEcC
Confidence            6666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.21  E-value=2.3e-05  Score=76.80  Aligned_cols=117  Identities=14%  Similarity=0.159  Sum_probs=59.7

Q ss_pred             hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCCCcc-ccccCCCcc
Q 012694          237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLP-RAIGKLTRL  314 (458)
Q Consensus       237 ~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L  314 (458)
                      .+.++..|+.+.+..+ ++.+....+.++.+|+.+.+..+ ++.++ ..+.++++|+.+.+.++.++.++ .+|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3445555555555443 55555555555556666655432 33332 23455566666666555555554 355556666


Q ss_pred             cEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCc-hhhhCC
Q 012694          315 EVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALP-DTFFRL  359 (458)
Q Consensus       315 ~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l  359 (458)
                      +.+.|..+   +..+. ..|.++.+|+.+.+..+ ++.+. .+|.++
T Consensus       313 ~~i~lp~~---l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          313 SSVTLPTA---LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CEEECCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             CEEEcCcc---ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            66666543   33332 23555566666655433 44442 344444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=4.5e-07  Score=84.29  Aligned_cols=78  Identities=31%  Similarity=0.349  Sum_probs=37.0

Q ss_pred             CCcccceeeeecCCCCCCc---hhhcCCCCccEEEeeCCCCCCCchhhcCCC--CCcEEEcCCCCCCc-CC------chh
Q 012694          194 GLQKLEELDVSSNLLQSLP---DSIGLLLNLKVLNVSGNKLNTLPESIARCS--SLVELDASFNNLVC-LP------TNI  261 (458)
Q Consensus       194 ~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~--~L~~L~l~~n~l~~-l~------~~~  261 (458)
                      ++++|++|+|++|.|+.++   ..+..+++|+.|+|++|+++.+ ..+..+.  +|++|++++|.+.. ++      ..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3445555555555554432   2334455555555555555544 1222222  55566666665542 22      123


Q ss_pred             hccCCCCCEEe
Q 012694          262 GYGLLNLERLS  272 (458)
Q Consensus       262 ~~~l~~L~~L~  272 (458)
                      ...+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            34566666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=3.6e-07  Score=84.96  Aligned_cols=79  Identities=30%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             cCCCCccEEEeeCCCCCCCc---hhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCc-cCC-------c
Q 012694          216 GLLLNLKVLNVSGNKLNTLP---ESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLR-TFP-------P  283 (458)
Q Consensus       216 ~~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~-~l~-------~  283 (458)
                      .++++|+.|+|++|+++.++   ..+..+++|+.|+|++|.++.+.. ..+..+ +|++|++++|.+. .+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            34566666666666666442   334456666666666666665421 111122 6666666666655 232       1


Q ss_pred             cccCCCCCcEEE
Q 012694          284 SICEMRSLKYLD  295 (458)
Q Consensus       284 ~l~~l~~L~~L~  295 (458)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            244556666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.97  E-value=1.3e-05  Score=70.65  Aligned_cols=107  Identities=19%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             CCCceeEEEecCC-CCC-----ccchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCC-----C
Q 012694          148 SGVVVETVDLADR-QLK-----LLPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQS-----L  211 (458)
Q Consensus       148 ~~~~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l  211 (458)
                      ....|+.|+|+++ .|.     .+.+++..-+.|+.|+|++|.|+     .+...+..-+.|++|+|++|.|+.     +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4567889999885 776     35567777788888898888887     345667777888888888888873     3


Q ss_pred             chhhcCCCCccEEEeeCC---CCC-----CCchhhcCCCCCcEEEcCCCCC
Q 012694          212 PDSIGLLLNLKVLNVSGN---KLN-----TLPESIARCSSLVELDASFNNL  254 (458)
Q Consensus       212 ~~~l~~l~~L~~L~l~~n---~l~-----~l~~~l~~l~~L~~L~l~~n~l  254 (458)
                      ..++..-+.|+.|+|++|   .+.     .+...+..-+.|+.|+++.|.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            455666677888888755   333     2344555667777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.94  E-value=6.8e-06  Score=72.39  Aligned_cols=85  Identities=21%  Similarity=0.254  Sum_probs=57.7

Q ss_pred             hhCCCCCCcEEEcccC-CCC-----ccchhhcCCcccceeeeecCCCCC-----CchhhcCCCCccEEEeeCCCCC----
Q 012694          168 AFGRLRGLVSLNLSRN-LLE-----AMPDSIAGLQKLEELDVSSNLLQS-----LPDSIGLLLNLKVLNVSGNKLN----  232 (458)
Q Consensus       168 ~~~~l~~L~~L~l~~n-~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~----  232 (458)
                      .+..-+.|+.|+|+++ .|.     .+..++..-..|++|+|++|.|++     +...+..-+.|++|+|++|.|+    
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            4455677888888875 776     345667777788888888888773     3455556677777777777777    


Q ss_pred             -CCchhhcCCCCCcEEEcCCC
Q 012694          233 -TLPESIARCSSLVELDASFN  252 (458)
Q Consensus       233 -~l~~~l~~l~~L~~L~l~~n  252 (458)
                       .+.+.+..-+.|++|++++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence             23445555566777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.85  E-value=1.2e-05  Score=69.40  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             CCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCcc-chhhcCC----CCCCEEeccCC-CCCCC-chhhhCCC
Q 012694          289 RSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTEL-PETIGDL----INLRELDLSNN-QIRAL-PDTFFRLE  360 (458)
Q Consensus       289 ~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l----~~L~~L~L~~n-~l~~l-~~~l~~l~  360 (458)
                      ..|+.||+++|.+++.. ..+..+++|++|+|++| ..+++- -..++.+    ++|++|+|++| +||+- -..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            35777777777766621 34567778888888877 223321 1234443    36888888887 57732 14566788


Q ss_pred             CCcEEECcCCC
Q 012694          361 NLTKLNLDQNP  371 (458)
Q Consensus       361 ~L~~L~L~~n~  371 (458)
                      +|++|+|++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            88888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=3.3e-05  Score=66.71  Aligned_cols=79  Identities=11%  Similarity=0.144  Sum_probs=32.6

Q ss_pred             CCcEEEcccCCCCccc-hhhcCCcccceeeeecCC-CCCC-chhhcCC----CCccEEEeeCC-CCCCC-chhhcCCCCC
Q 012694          174 GLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNL-LQSL-PDSIGLL----LNLKVLNVSGN-KLNTL-PESIARCSSL  244 (458)
Q Consensus       174 ~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~-l~~l-~~~l~~l----~~L~~L~l~~n-~l~~l-~~~l~~l~~L  244 (458)
                      .|+.|++++|.|+... ..+.++++|++|+|++|. |++- -..+..+    ++|++|++++| +++.- -..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            3444444444444221 233444455555555443 4321 0122221    23555555554 24411 0233445555


Q ss_pred             cEEEcCCC
Q 012694          245 VELDASFN  252 (458)
Q Consensus       245 ~~L~l~~n  252 (458)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.78  E-value=0.002  Score=52.62  Aligned_cols=56  Identities=29%  Similarity=0.427  Sum_probs=42.7

Q ss_pred             EEEccCCCCCCC--ccchhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          316 VLNLSSNFNDLT--ELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       316 ~L~L~~n~~~~~--~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .++.+++  +++  .+|..+  ..+|+.|+|++|+|+.++ ..|..+++|+.|+|++|++.+.
T Consensus        12 ~v~Cs~~--~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRR--GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSS--CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCC--CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5666664  555  666533  247899999999999986 4678899999999999999754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.75  E-value=0.0025  Score=52.13  Aligned_cols=54  Identities=24%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             EEEeeCCCCC--CCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694          223 VLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL  278 (458)
Q Consensus       223 ~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  278 (458)
                      .++.+++.++  .+|..+  ..+|++|+|++|.|+.++.+.+..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            3444444444  444322  12455555555555555555554555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-18
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-13
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-13
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	1e-06
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 93.9 bits (232), Expect = 1e-21
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228
             +L  L SL  + N +  +      L  L+EL ++ N L+ +  ++  L NL  L+++ 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 250

Query: 229 NKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEM 288
           N+++ L   ++  + L EL    N +  +    G   L                  I  +
Sbjct: 251 NQISNLA-PLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISPISNL 306

Query: 289 RSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQ 348
           ++L YL  +FN +  +   +  LT+L+ L  ++N   ++++   + +L N+  L   +NQ
Sbjct: 307 KNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK--VSDVSS-LANLTNINWLSAGHNQ 362

Query: 349 IRALPDTFFRLENLTKLNLDQN 370
           I  L      L  +T+L L+  
Sbjct: 363 ISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 2e-15
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 11/192 (5%)

Query: 188 MPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVEL 247
               +A L  LE L  ++N +  +     +L NL  L+++GN+L  +  ++A  ++L +L
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKDIG-TLASLTNLTDL 246

Query: 248 DASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRA 307
           D + N +  L      GL  L  L +  N++    P +  + +L  L+ + N+L      
Sbjct: 247 DLANNQISNLAPL--SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISP 302

Query: 308 IGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNL 367
           I  L  L  L L   FN+++++   +  L  L+ L  +NN++  +  +   L N+  L+ 
Sbjct: 303 ISNLKNLTYLTLY--FNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSA 358

Query: 368 DQNPLV-IPPME 378
             N +  + P+ 
Sbjct: 359 GHNQISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
             + L    +  +      L  L  L  + N +     S+A L  +  L    N +  L 
Sbjct: 310 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLT 367

Query: 213 DSIGLLLNLKVLNVSGN 229
             +  L  +  L ++  
Sbjct: 368 -PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 8e-08
 Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 18/219 (8%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   +   L +  +     S   L ++  L      ++S+ D +  L NL  +N S N+L
Sbjct: 21  LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 78

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
             +   +   + LV++  + N +  +        L    L            ++  +  L
Sbjct: 79  TDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 292 KYLDAHFNELHGLPRAIG--------------KLTRLEVLNLSSNFNDLTELPETIGDLI 337
           +      +++  L                    L  L  L      ++       +  L 
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 338 NLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP 376
           NL  L  +NNQI  +        NL +L+L+ N L    
Sbjct: 198 NLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIG 235

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 27/239 (11%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
           V T+      +K + +    L  L  +N S N L  +   +  L KL ++ +++N  Q  
Sbjct: 46  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNN--QIA 101

Query: 212 PDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGY-------- 263
             +    L         N   T  + +   ++L  L+ S N +  +    G         
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 264 ----------GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTR 313
                       L         +   +    + ++ +L+ L A  N++  +   +G LT 
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTN 220

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           L+ L+L  N N L ++  T+  L NL +LDL+NNQI  L      L  LT+L L  N +
Sbjct: 221 LDELSL--NGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI 275

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 315 EVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLV- 373
           E +       ++T+   +  DL  +  L      I+++ D    L NLT++N   N L  
Sbjct: 23  EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD 80

Query: 374 IPPME 378
           I P++
Sbjct: 81  ITPLK 85

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
            L    +  +    + T   S  ++  +  L A    +  +   +  L  L  +N S+  
Sbjct: 20  ALAEKMKTVLGKTNV-TDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSN-- 75

Query: 324 NDLTELPETIGDLINLRELDLSNNQ 348
           N LT++   + +L  L ++ ++NNQ
Sbjct: 76  NQLTDITP-LKNLTKLVDILMNNNQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 6e-20
 Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 39/256 (15%)

Query: 152 VETVDLADRQL-KLLPEAFGRLRGLVSLNLS-RNLLEAMPDSIAGLQKLEELDVSSNLLQ 209
              +DL + ++ ++    F  L+ L +L L    + +  P + A L KLE L +S N L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 210 SLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSS---LVELDASFNNLVCLPTNIGYGLL 266
            LP+ +     L+ L V  N++  + +S+    +   +VEL  +      +      G+ 
Sbjct: 93  ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 267 NLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHG-LPRAIGKLTRLEVLNLSS---- 321
            L  + I    + T P  +    SL  L    N++      ++  L  L  L LS     
Sbjct: 151 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 322 ------------------NFNDLTELPETIGDLINLRELDLSNNQIRALPDTFF------ 357
                             N N L ++P  + D   ++ + L NN I A+    F      
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 358 -RLENLTKLNLDQNPL 372
            +  + + ++L  NP+
Sbjct: 269 TKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 34/185 (18%), Positives = 75/185 (40%), Gaps = 9/185 (4%)

Query: 198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLVC 256
           L  +  S   L+ +P  +    +  +L++  NK+  + +       +L  L    N +  
Sbjct: 12  LRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 257 LPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAI-GKLTRLE 315
           +       L+ LERL +  N+L+  P  + +    + L  H NE+  + +++   L ++ 
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMI 127

Query: 316 VLNL-SSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
           V+ L ++              +  L  + +++  I  +P       +LT+L+LD N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITK 185

Query: 375 PPMEI 379
                
Sbjct: 186 VDAAS 190

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 5e-14
 Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 14/194 (7%)

Query: 163 KLLPEAFGRLRGLVSLNL---SRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLL 219
           K+    F  L  ++ + L             +  G++KL  + ++   + ++P   GL  
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPP 171

Query: 220 NLKVLNVSGNKLNT-LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKL 278
           +L  L++ GNK+      S+   ++L +L  SFN++  +         +L  L +  NKL
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 279 RTFPPSICEMRSLKYLDAHFNELHGLPR-------AIGKLTRLEVLNLSSNFNDLTEL-P 330
              P  + + + ++ +  H N +  +            K      ++L SN     E+ P
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

Query: 331 ETIGDLINLRELDL 344
            T   +     + L
Sbjct: 292 STFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 6e-18
 Identities = 44/205 (21%), Positives = 68/205 (33%), Gaps = 4/205 (1%)

Query: 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVS 227
             ++   + +N  +  L A+P  +   +    L +S NLL +    ++     L  LN+ 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 228 GNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE 287
             +L    +       L  LD S N L  LP                         ++  
Sbjct: 64  RAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 288 MRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNN 347
           +  L+ L    NEL  LP  +   T        +N N        +  L NL  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 348 QIRALPDTFFRLENLTKLNLDQNPL 372
            +  +P  FF    L    L  NP 
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)

Query: 183 NLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN------TLPE 236
           NL E     + GL+ L+ L +  N L ++P        L    + GN             
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218

Query: 237 SIARCSSLVELDASFNNLVCLPTNI 261
            +   +  V +     ++  + +N+
Sbjct: 219 WLQDNAENVYVWKQGVDVKAMTSNV 243

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 237 SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLD 295
            +++ +S +E++    NL  LP ++     +   L +  N L TF   ++     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 15/47 (31%)

Query: 160 RQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN 206
              +L       L  L +L L  N L  +P    G   L    +  N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 47/177 (26%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 152 VETVDLADRQLK-LLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS 210
              + L++  L             L  LNL R            L  L  LD+S N LQS
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 211 LPDSIGLLLNLKVLNVSGNKLNTL-------------------------PESIARCSSLV 245
           LP     L  L VL+VS N+L +L                         P  +     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELH 302
           +L  + NNL  LP  +  GL NL+ L ++ N L T P        L +   H N   
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 44/267 (16%), Positives = 104/267 (38%), Gaps = 50/267 (18%)

Query: 154 TVDLADRQLKLLPEAFGRL--RGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLL--Q 209
           T+DL  +   L P+  GRL  +G+++    R+ ++          +++ +D+S++++   
Sbjct: 4   TLDLTGK--NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 210 SLPDSIGLLLNLKVLNVSGNKLN-TLPESIARCSSLVELDASFNNLVCL--PTNIGYGLL 266
           +L   +     L+ L++ G +L+  +  ++A+ S+LV L+ S  +         +     
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 267 NLERLSIKLNKLRT-------------------------------FPPSICEMRSLKYLD 295
            L+ L++      T                                   +    +L +LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 296 AHFNELHG--LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALP 353
              + +      +   +L  L+ L+LS  ++ + E    +G++  L+ L +       +P
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VP 237

Query: 354 DTFFR--LENLTKLNLDQNPL--VIPP 376
           D   +   E L  L ++ +    +  P
Sbjct: 238 DGTLQLLKEALPHLQINCSHFTTIARP 264

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 67.5 bits (163), Expect = 5e-13
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 285 ICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDL 344
                SL+ L+   N+L  LP    +L RL     S  FN L E+PE      NL++L +
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPPRLERL---IAS--FNHLAEVPELPQ---NLKQLHV 331

Query: 345 SNNQIRALPDTFFRLENLTKLN 366
             N +R  PD    +E+L ++N
Sbjct: 332 EYNPLREFPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228
                 L  LN+S N L  +P       +LE L  S N L  +P+      NLK L+V  
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQLHVEY 333

Query: 229 NKLNTLPESIARCSSLVELDASFNN 253
           N L   P+      S+ +L    N+
Sbjct: 334 NPLREFPDIP---ESVEDLR--MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.0 bits (146), Expect = 8e-11
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 220 NLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR 279
           +L+ LNVS NKL  LP        L  L ASFN+L  +P        NL++L ++ N LR
Sbjct: 285 SLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ----NLKQLHVEYNPLR 337

Query: 280 TFPPSICEMRSLK 292
            FP     +  L+
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
              LE LN+S+N   L ELP        L  L  S N +  +P+     +NL +L+++ N
Sbjct: 283 PPSLEELNVSNNK--LIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYN 334

Query: 371 PLVIPP 376
           PL   P
Sbjct: 335 PLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
           N +        SL EL+ S N L+ LP         LERL    N L   P      ++L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPALPP----RLERLIASFNHLAEVPELP---QNL 326

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLN 318
           K L   +N L   P     +  L + +
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP 212
           E +++++ +L  LP    RL     L  S N L  +P+     Q L++L V  N L+  P
Sbjct: 287 EELNVSNNKLIELPALPPRLE---RLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFP 340

Query: 213 DSIGLLLNLKVLN 225
           D    + +L++ +
Sbjct: 341 DIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 197 KLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVC 256
           +  EL++++  L SLP+      +L+ L  S N L  LPE      SL+  + +   L  
Sbjct: 39  QAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 257 LPTNIGY 263
           LP  + Y
Sbjct: 96  LPPLLEY 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
              L L++    L+ LPE      +L  L  S N +  LP+     ++L  L +D N L
Sbjct: 40  AHELELNNL--GLSSLPELPP---HLESLVASCNSLTELPEL---PQSLKSLLVDNNNL 90

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 167 EAFGRLR-----GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNL 221
            A  RLR         L L+   L ++P+       LE L  S N L  LP+      +L
Sbjct: 27  MAVSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQ---SL 80

Query: 222 KVLNVSGNKLNTLP 235
           K L V  N L  L 
Sbjct: 81  KSLLVDNNNLKALS 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 286 CEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLS 345
           C  R    L+ +   L  LP        LE L  S   N LTELPE      +L+ L + 
Sbjct: 35  CLDRQAHELELNNLGLSSLPELPPH---LESLVAS--CNSLTELPELPQ---SLKSLLVD 86

Query: 346 NNQIRALPDTFFRL 359
           NN ++AL D    L
Sbjct: 87  NNNLKALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 338 NLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
              EL+L+N  + +LP+      +L  L    N L   P    +
Sbjct: 39  QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQS 79

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 336 LINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPMEIVN 381
             +L EL++SNN++  LP        L +L    N L   P    N
Sbjct: 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQN 325

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 7/73 (9%)

Query: 239 ARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHF 298
                  EL+ +   L  LP        +LE L    N L   P       SLK L    
Sbjct: 35  CLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPELPQ---SLKSLLVDN 87

Query: 299 NELHGLPRAIGKL 311
           N L  L      L
Sbjct: 88  NNLKALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSL 211
              ++L +  L  LPE    L    SL  S N L  +P+     Q L+ L V +N L++L
Sbjct: 40  AHELELNNLGLSSLPELPPHLE---SLVASCNSLTELPELP---QSLKSLLVDNNNLKAL 93

Query: 212 PDSIGLL 218
            D   LL
Sbjct: 94  SDLPPLL 100

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 8e-11
 Identities = 52/255 (20%), Positives = 83/255 (32%), Gaps = 35/255 (13%)

Query: 154 TVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSS------- 205
           T     + L+ +P           + L  N +  +P  S    + L  L + S       
Sbjct: 15  TTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 206 -------------------NLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARC-SSLV 245
                               L    P +   L  L  L++    L  L   + R  ++L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELHGL 304
            L    N L  LP +    L NL  L +  N++ + P  +   + SL  L  H N +  +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 305 -PRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLT 363
            P A   L RL  L L +N        E +  L  L+ L L++N              L 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 364 KLNLDQNPLV--IPP 376
           K     + +   +P 
Sbjct: 252 KFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 36/162 (22%), Positives = 53/162 (32%), Gaps = 7/162 (4%)

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
              +     L  +P  I   ++   +    N +  +P        NL  L +  N L   
Sbjct: 14  VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 282 PPSICEMRSLKYLDAHFNEL---HGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLIN 338
             +     +L       +        P     L RL  L+L          P     L  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAA 130

Query: 339 LRELDLSNNQIRAL-PDTFFRLENLTKLNLDQNPLVIPPMEI 379
           L+ L L +N ++AL  DTF  L NLT L L  N +   P   
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 164 LLPEAFGRLRGLVSLNLSRNL-LEAMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNL 221
           +   AF  L  L  L L +N      P +   L +L  L + +N L +L  +++  L  L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVC-LPTNI-GYGLLNL 268
           + L ++ N       +    + L +   S + + C LP  + G  L  L
Sbjct: 228 QYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL 276

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.9 bits (134), Expect = 3e-10
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 222 KVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTF 281
           +VL+++   L  L   + +   +  LD S N L  LP  +   L  LE L    N     
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNA-LEN 57

Query: 282 PPSICEMRSLKYLDAHFNELHGLP--RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINL 339
              +  +  L+ L    N L      + +    RL +LNL    N L +       L  +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG--NSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 6e-10
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 247 LDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR 306
           L  +  +L  L  ++   LL +  L +  N+LR  PP++  +R L+ L A  N L  +  
Sbjct: 3   LHLAHKDLTVLC-HLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 59

Query: 307 AIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENL 362
            +  L RL+ L L +N    +   + +     L  L+L  N +        RL  +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSI 215
            LA + L +L     +L  +  L+LS N L A+P ++A L+ LE L  S N L+++   +
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV 61

Query: 216 GLLLNLKVLNVSGNKLNTLP--ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS 272
             L  L+ L +  N+L      + +  C  LV L+   N+L             L  +S
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 7e-08
 Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 178 LNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES 237
           L+L+   L  +   +  L  +  LD+S N L++LP ++  L  L+VL  S N L  +   
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 60

Query: 238 IARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAH 297
           +A    L EL    N L                              +     L  L+  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAA----------------------IQPLVSCPRLVLLNLQ 98

Query: 298 FNELHGLPRAIGKLTRL 314
            N L        +L  +
Sbjct: 99  GNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 271 LSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
           L +    L T    + ++  + +LD   N L  LP A+  L  LEVL      ++  E  
Sbjct: 3   LHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ---ASDNALENV 58

Query: 331 ETIGDLINLRELDLSNNQIRALPD--TFFRLENLTKLNLDQNPL 372
           + + +L  L+EL L NN+++             L  LNL  N L
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP 375
           VL+L+    DLT L   +  L+ +  LDLS+N++RALP     L  L  L    N L   
Sbjct: 2   VLHLAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 376 P 376
            
Sbjct: 59  D 59

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 19/211 (9%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   + +   ++ +     + A L  +  L      + ++   +  L NL  L +  N++
Sbjct: 18  LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQI 75

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLE------------RLSIKLNKLR 279
             L              +               +  L+                 L  L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 280 TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF---NDLTELPETIGDL 336
                I  +  L  L        G  +         +  L++     N ++++   +  L
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASL 194

Query: 337 INLRELDLSNNQIRALPDTFFRLENLTKLNL 367
            NL E+ L NNQI  +        NL  + L
Sbjct: 195 PNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 22/192 (11%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLN-LKVLNVSGNK 230
           L G+ +L+     +  +   +  L  L  L++  N +  L     L       L+ +  K
Sbjct: 40  LDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 231 LNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSI----------------K 274
             +    +    +L        ++  L       +L L+   I                 
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

Query: 275 LNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIG 334
            N   +    +  +  L  L A  N++  +   +  L  L  ++L +  N ++++   + 
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKN--NQISDVSP-LA 214

Query: 335 DLINLRELDLSN 346
           +  NL  + L+N
Sbjct: 215 NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 315 EVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVI 374
             + +++  +++T+   T  DL  +  L      +  +      L NL  L L  N +  
Sbjct: 20  NAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITD 77

Query: 375 PPM 377
              
Sbjct: 78  LAP 80

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS 227
              L  L +L    N +  +   +A L  L E+ + +N +  +   +    NL ++ ++
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 11/196 (5%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
               +  NL +  +     +   L  ++++  +++ ++S+   I  L N+  L ++GNKL
Sbjct: 23  FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL 80

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
                 I   ++L  L   F +   +        L   +     +   +    +  +  L
Sbjct: 81  T----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
           + L    N++  +           +    +  +D+  L      L  L+ L LS N I  
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKNHISD 192

Query: 352 LPDTFFRLENLTKLNL 367
           L      L+NL  L L
Sbjct: 193 LRA-LAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 166 PEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSS 205
                 L  L +L LS+N +  +  ++AGL+ L+ L++ S
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 8e-10
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 11/194 (5%)

Query: 172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           L   +   L +  +     S   L ++  L      ++S+ D +  L NL  +N S N+ 
Sbjct: 17  LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ- 73

Query: 232 NTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSL 291
                 I    +L +L     N   +        L         N   T    +  + +L
Sbjct: 74  ---LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 292 KYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRA 351
             L+   N +  +    G  +  ++   S+   DL    + + +L  L  LD+S+N++  
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL----KPLANLTTLERLDISSNKVSD 186

Query: 352 LPDTFFRLENLTKL 365
           +     +L NL  L
Sbjct: 187 ISV-LAKLTNLESL 199

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 9e-09
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 290 SLKYLDAHFNEL--HGLPRAIGKLTRLEVLNLSSN---FNDLTELPETIGDLINLRELDL 344
            ++ LD    EL        +  L + +V+ L           ++   +     L EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 345 SNNQI-----RALPDTFFRLE-NLTKLNL 367
            +N++       +          + KL+L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 198 LEELDVSSNLL--QSLPDSIGLLLNLKVLNVSGNKLN-----TLPESIARCSSLVELDAS 250
           ++ LD+    L      + + LL   +V+ +    L       +  ++    +L EL+  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 251 FNNL-----VCLPTNIGYGLLNLERLSI 273
            N L      C+   +      +++LS+
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 3e-07
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI-----RALPDTFFRLENLTKLNLD 368
           ++ L++           E +  L   + + L +  +     + +         L +LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 369 QNPL 372
            N L
Sbjct: 64  SNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 7e-06
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 175 LVSLNLSRNLL--EAMPDSIAGLQKLEELDVSSNLL-----QSLPDSIGLLLNLKVLNVS 227
           + SL++    L      + +  LQ+ + + +    L     + +  ++ +   L  LN+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 228 GNKL-NTLPESIAR-----CSSLVELDASFNNLVC 256
            N+L +     + +        + +L      L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 312 TRLEVLNLSSNF---NDLTELPETIGDLINLRELDLSNNQI-----RALPDTFFRLE-NL 362
           + L VL L+      +  + L  T+    +LRELDLSNN +       L ++  +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 363 TKLNLDQNPLVIPPMEIVNKGVEAVKE 389
            +L L          E +   ++A+++
Sbjct: 429 EQLVLYDIYW----SEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 152 VETVDLADRQL--KLLPEAFGRLRGLVSLNLSRNLL-----EAMPDSIAGLQKLEELDVS 204
           ++++D+   +L      E    L+    + L    L     + +  ++     L EL++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 205 SNLL-----QSLPDSIG-LLLNLKVLNVSGN 229
           SN L       +   +      ++ L++   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 288 MRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNF---NDLTELPETIGD-LIN 338
              L+ L     ++       L   +     L  L+LS+N      + +L E++      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 339 LRELDLSNNQIRALPDTFFRLENLTKLN 366
           L +L L +       +   RL+ L K  
Sbjct: 428 LEQLVLYDIYWS--EEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 27/114 (23%)

Query: 219 LNLKVLNVSGNKLN--TLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLN 276
           L+++ L++   +L+     E +        +      L    T                 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEAR-------------- 43

Query: 277 KLRTFPPSICEMRSLKYLDAHFNEL-----HGLPRAIGK-LTRLEVLNLSSNFN 324
             +    ++    +L  L+   NEL     H + + +     +++ L+L +   
Sbjct: 44  -CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 337 INLRELDLSNNQI--RALPDTFFRLENLTKLNLDQNPL 372
           ++++ LD+   ++      +    L+    + LD   L
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 39

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 5e-04
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 175 LVSLNLSRNLL-----EAMPDSIAGLQKLEELDVSSNLL-----QSLPDSI-GLLLNLKV 223
           L  L L+   +      ++  ++     L ELD+S+N L       L +S+      L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 224 LNVSGNKLN 232
           L +     +
Sbjct: 431 LVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 8e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 220 NLKVLNVSGNKLNT-----LPESIARCSSLVELDASFNNL-----VCLPTNIGYGLLNLE 269
            L+VL ++   ++      L  ++    SL ELD S N L     + L  ++      LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 270 RLSIKLNKL 278
           +L +     
Sbjct: 430 QLVLYDIYW 438

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 318 NLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +L +N      LP+ +  L  L  L++S N +         L+         N  
Sbjct: 250 DLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 276 NKLR-TFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP 330
           N++  T P  + +++ L  L+  FN L G     G L R +V   ++N   L   P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN-KCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 179 NLSRN-LLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKL 231
           +L  N +   +P  +  L+ L  L+VS N L       G L    V   + NK 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 12/51 (23%), Positives = 17/51 (33%)

Query: 206 NLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVC 256
            +  +LP  +  L  L  LNVS N L                  + N  +C
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 165 LPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN-LLQSLP 212
           LP+   +L+ L SLN+S N L         LQ+ +    ++N  L   P
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 191 SIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNT-----LPESIARCSSLV 245
           SI G + L+   +++   +S+   +    ++K + +SGN + T     L E+IA    L 
Sbjct: 4   SIEG-KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRS 290
             + S      +   I   L  L +  +K  KL T   S      
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 107

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 287 EMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF---NDLTELPETIGDLINLRELD 343
           E +SLK       +   +   + +   ++ + LS N         L E I    +L   +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 344 LSNNQIRALPD 354
            S+     + D
Sbjct: 66  FSDIFTGRVKD 76

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 314 LEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQI-----RALPDTFFRLENLTKLNLD 368
           L++  +++   D   +   + +  +++E+ LS N I     R L +     ++L      
Sbjct: 10  LKLDAITTE--DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 369 QNPLVIPPMEI 379
                    EI
Sbjct: 68  DIFTGRVKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 309 GKLTRLEVLNLSSNF---NDLTELPETIGD-LINLRELDLSNNQIRALPDTFFRLENLTK 364
            +   L+ L L  N    + +  L   I + + +L  L+L+ N+     D    +  +  
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 329

Query: 365 LN 366
             
Sbjct: 330 TR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 156 DLADRQLKLLPEAFGRLRGLVSLNLSRNLL-----EAMPDSIAGLQKLEELDVSSNLLQS 210
            +     K +         +  + LS N +       + ++IA  + LE  + S      
Sbjct: 14  AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR 73

Query: 211 LPDSI 215
           + D I
Sbjct: 74  VKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 195 LQKLEELDVSSNLL-----QSLPDSI-GLLLNLKVLNVSGNKLNTLPESIARCSSLVEL 247
              L+ L +  N +     ++L   I   + +L  L ++GN+ +   + +     +   
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 318 NLSSNFNDLTELPETIGDLINLRELDLSNNQI-----RALPDTFF-RLENLTKLNLDQNP 371
            LS+          +  + I L+ L L  N+I     R L      ++ +L  L L+ N 
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 372 LVIPPMEIVNKGVEAVKEFMAKRWDGIIAE 401
                    +  V+ ++E  + R  G + E
Sbjct: 314 F-----SEEDDVVDEIREVFSTRGRGELDE 338

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 267 NLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSN-FND 325
           +  + ++ L  LR   P +        L+   +    L      +  L  LNLS+N    
Sbjct: 21  DGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 326 LTELPETIGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQNPLV 373
           L ++   +    NL+ L+LS N++++  +    +   L +L LD N L 
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 5/147 (3%)

Query: 136 NEDVVKILQEAESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGL 195
            E V ++              L  + L+  P+        V LN   ++   +      +
Sbjct: 6   PEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEENI 64

Query: 196 QKLEELDVSSNLL---QSLPDSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASF 251
            +L  L++S+N L     +   +    NLK+LN+SGN+L +  E    +   L EL    
Sbjct: 65  PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124

Query: 252 NNLVCLPTNIGYGLLNLERLSIKLNKL 278
           N+L     +    +  +     KL +L
Sbjct: 125 NSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 276 NKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGD 335
            ++      + +             L   P  +       VLN  S+      L     +
Sbjct: 7   EQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSM--AATLRIIEEN 63

Query: 336 LINLRELDLSNNQIR---ALPDTFFRLENLTKLNLDQNPL 372
           +  L  L+LSNN++     +     +  NL  LNL  N L
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 103

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 33/174 (18%)

Query: 202 DVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNI 261
           ++    ++ L   +    +     +    L + P+ +   +  V L+   +++      I
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRR-SSMAATLRII 60

Query: 262 GYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSS 321
              +  L  L++  N+L                         +   + K   L++LNLS 
Sbjct: 61  EENIPELLSLNLSNNRLYRLDD--------------------MSSIVQKAPNLKILNLSG 100

Query: 322 N-FNDLTELPETIGDLINLRELDLSNNQIRALPD--------TFFRLENLTKLN 366
           N      EL       + L EL L  N +                R   L +L+
Sbjct: 101 NELKSEREL--DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 325 DLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPL 372
           +L E      + +  RELDL   +I  + +    L+    ++   N +
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 8/147 (5%)

Query: 180 LSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIA 239
           L+  L+E          +  ELD+    +  + +    L     ++ S N++  L     
Sbjct: 3   LTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFP 60

Query: 240 RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP----PSICEMRSLKYLD 295
               L  L  + N +  +   +   L +L  L +  N L         +  +  +   + 
Sbjct: 61  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 296 --AHFNELHGLPRAIGKLTRLEVLNLS 320
                N+ H     I K+ ++ VL+  
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 311 LTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQN 370
             R   L+L      +  +      L     +D S+N+IR L   F  L  L  L ++ N
Sbjct: 17  AVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNN 73

Query: 371 P 371
            
Sbjct: 74  R 74

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 169 FGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG 228
           +        L+L    +  + +  A L + + +D S N ++ L     LL  LK L V+ 
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNN 72

Query: 229 NKLNT-LPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPS--- 284
           N++             L EL  + N+LV L        L        L    T       
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 285 --ICEMRSLKYLD 295
             I ++  ++ LD
Sbjct: 133 YVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 29/167 (17%)

Query: 204 SSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGY 263
           ++ L++        +   + L++ G K+  +                         N+G 
Sbjct: 4   TAELIEQAAQYTNAV-RDRELDLRGYKIPVIE------------------------NLGA 38

Query: 264 GLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNF 323
            L   + +    N++R         R    L  +             L  L  L L++N 
Sbjct: 39  TLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 98

Query: 324 NDLTELPETIGDLINLRELDLSNNQIRALPD----TFFRLENLTKLN 366
                  + +  L +L  L +  N +           +++  +  L+
Sbjct: 99  LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLN 366
             T  E + L      + ++  T+  L   + L LS N I  +      +ENL  L+
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILS 76

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 25/189 (13%)

Query: 165 LPEAFGRLR---GLVSLNLSRNLL-------EAMPDSIAGLQKLEELDVSSNLLQSLPDS 214
           + +A         +V+    +  L       E M  +++ L+  + L +S+N ++ +  S
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S 65

Query: 215 IGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIK 274
           +  + NL++L++  N +  +    A   +L EL  S+N +  L        L +  +S  
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 275 LNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIG 334
                     +  +  L+ L    N L+   +     +                  E + 
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY--------------RIEVVK 171

Query: 335 DLINLRELD 343
            L NL++LD
Sbjct: 172 RLPNLKKLD 180

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 3e-06
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 331 ETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIPPME 378
           +          LD+S  +I +LP      L+ L   +       +P +E
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-KLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 164 LLPEAFGRLRGLVSLNLSRNLLEAMPDSI-AGLQKLEELDVSSNLLQSLP 212
           L  + F    G V L++SR  + ++P      L+KL      +  L+ LP
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 190 DSIAGLQKLEELDVSSNLLQSLPDSI-GLLLNLKVLNVSGNKLNTLP 235
           D   G      LD+S   + SLP      L  L+  +     L  LP
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP 283
           +     S  V LD S   +  LP+     L  L   S     L+  P 
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS--TYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 322 NFNDLTELPETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNP 371
             + +TE+P  +    N  EL     ++R +    F    +L K+ + QN 
Sbjct: 16  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 213 DSIGLLLNLKVLNVSGNKLNTLPESI-ARCSSLVELDASFNNLVCLPT 259
           D         +L++S  ++++LP         L     S  NL  LPT
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 286 CEMRSLKYLDAHFNELHGLPR-AIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELD 343
              +  +   +  N L  LP       +   +L++S     +  LP   + +L  LR   
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYGLENLKKLRARS 231

Query: 344 LSNNQIRALP 353
             N  ++ LP
Sbjct: 232 TYN--LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 241 CSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHFN 299
                   +  NNL  LP ++ +G      L I   ++ + P    E ++ L+       
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS--TY 233

Query: 300 ELHGLP 305
            L  LP
Sbjct: 234 NLKKLP 239

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 26/115 (22%)

Query: 283 PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRE 341
           P  C       L    +        +     L  L + +    L  L    +  L  LR 
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ-QHLQHLELRDLRGLGELRN 60

Query: 342 LDL------------------------SNNQIRALPDTFFRLENLTKLNLDQNPL 372
           L +                        S N + +L     +  +L +L L  NPL
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 4/137 (2%)

Query: 240 RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICE-MRSLKYLDAHF 298
                  L  + +  +    ++       E        L+         +  L+ L    
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 299 NELHGLPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDT--F 356
           + L  +       T        S  N L  L       ++L+EL LS N +         
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 357 FRLENLTKLNLDQNPLV 373
            R E      + +  L 
Sbjct: 125 QRWEEEGLGGVPEQKLQ 141

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 2/132 (1%)

Query: 198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNK-LNTLPESIAR-CSSLVELDASFNNLV 255
              L  + +        +    NL  L +   + L  L     R    L  L    + L 
Sbjct: 10  SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 256 CLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLE 315
            +  +  +    L RL++  N L +      +  SL+ L    N LH            E
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

Query: 316 VLNLSSNFNDLT 327
                     L 
Sbjct: 130 EGLGGVPEQKLQ 141

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 159 DRQLKLLPEAFGRLRGLVSLNL-SRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGL 217
           ++  ++  + F  L  L +LNL    +   MP S   L  L  L+++SN           
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 218 LLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNI 261
              L+  +++G        + ++   +   D   +   C   N 
Sbjct: 148 AEWLRKKSLNGG--AARCGAPSKVRDVQIKDLPHSEFKCSSENS 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.01
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.8

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-23  Score=192.23  Aligned_cols=200  Identities=32%  Similarity=0.400  Sum_probs=141.2

Q ss_pred             CCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEe
Q 012694          148 SGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNV  226 (458)
Q Consensus       148 ~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l  226 (458)
                      +...+.++++++++++.+|..+.  +++++|+|++|.|+.++ ..|.++++|++|++++|+|+.++. ++.+++|++|++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEEC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccc
Confidence            34455667788888887776554  46778888888887776 457777788888888887777653 456777777777


Q ss_pred             eCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccc
Q 012694          227 SGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPR  306 (458)
Q Consensus       227 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~  306 (458)
                      ++|+++..+..+..+++|+.|++++|.+..++...+..                       +.++++|++++|.++.++.
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------------l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-----------------------LGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-----------------------CTTCCEEECTTSCCCCCCT
T ss_pred             ccccccccccccccccccccccccccccceeecccccc-----------------------ccccccccccccccceecc
Confidence            77777766666666667777777666666555444434                       4455555555555555442


Q ss_pred             -cccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCC
Q 012694          307 -AIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       307 -~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                       .+..+++|+.|++++|  .+..++ ..+..+++|++|+|++|+|+.+|..+..+++|+.|+|++|++.+.
T Consensus       142 ~~~~~l~~l~~l~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTCTTCCEEECTTS--CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccccccchhcccccc--cccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence             4455667777777776  444554 346778899999999999999988888899999999999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=9.6e-23  Score=193.91  Aligned_cols=217  Identities=23%  Similarity=0.342  Sum_probs=132.6

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEee
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVS  227 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~  227 (458)
                      +++++|++++|.|+.+|+ .|..+++|++|++++|.+..++ ..|.++++|++|++++|+++.+|..+  ...++.|++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence            568999999999998886 6888999999999999998874 56889999999999999999887643  4678888888


Q ss_pred             CCCCCCCch-hhc--------------------------CCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCcc
Q 012694          228 GNKLNTLPE-SIA--------------------------RCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRT  280 (458)
Q Consensus       228 ~n~l~~l~~-~l~--------------------------~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  280 (458)
                      +|.+..++. .+.                          .+++|+.+++++|.+..++...   +++|+.|++++|.++.
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc---CCccCEEECCCCcCCC
Confidence            887775542 222                          3444445555555444444332   3445555555554442


Q ss_pred             -CCccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCch----
Q 012694          281 -FPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPD----  354 (458)
Q Consensus       281 -l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~----  354 (458)
                       .+..+..++.+++|++++|.+++++ ..+.++++|++|+|++|  .+..+|.++..+++|++|+|++|+|+.++.    
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N--~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeecccc--cccccccccccccCCCEEECCCCccCccChhhcc
Confidence             2334444555555555555555532 34445555555555554  344555555555555555555555554431    


Q ss_pred             ---hhhCCCCCcEEECcCCCCC
Q 012694          355 ---TFFRLENLTKLNLDQNPLV  373 (458)
Q Consensus       355 ---~l~~l~~L~~L~L~~n~i~  373 (458)
                         .+....+|+.|+|++|++.
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSC
T ss_pred             CcchhcccCCCCEEECCCCcCc
Confidence               1122344555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.9e-23  Score=190.37  Aligned_cols=180  Identities=29%  Similarity=0.399  Sum_probs=135.2

Q ss_pred             cccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEecc
Q 012694          196 QKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIK  274 (458)
Q Consensus       196 ~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~  274 (458)
                      ..+.+.+.+++.++.+|..+.  ++|++|+|++|+++.++ ..+.++++|++|++++|.++.++..  ..+++|+.|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~--~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc--cccccccccccc
Confidence            344444555555665555442  35666666666666554 3456666677777777766666532  357778888888


Q ss_pred             CCcCccCCccccCCCCCcEEEcccCCCCCcc-ccccCCCcccEEEccCCCCCCCccch-hhcCCCCCCEEeccCCCCCCC
Q 012694          275 LNKLRTFPPSICEMRSLKYLDAHFNELHGLP-RAIGKLTRLEVLNLSSNFNDLTELPE-TIGDLINLRELDLSNNQIRAL  352 (458)
Q Consensus       275 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~l~~l  352 (458)
                      +|+++.++..+..+++|+.|++++|.+..++ ..+..+.++++|++++|  .+..++. .+..+++|+.+++++|+|+.+
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n--~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccccccccccccccccccccccceeecccccccccccccccccc--ccceeccccccccccchhccccccccccc
Confidence            8888877778888899999999999998865 46778899999999998  5667654 457789999999999999988


Q ss_pred             c-hhhhCCCCCcEEECcCCCCCCCcHHHHh
Q 012694          353 P-DTFFRLENLTKLNLDQNPLVIPPMEIVN  381 (458)
Q Consensus       353 ~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~  381 (458)
                      + ..+..+++|++|+|++|.|+.+|..++.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~  193 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTIPKGFFG  193 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CccccccccccceeecccCCCcccChhHCC
Confidence            6 5688899999999999999988876553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-22  Score=189.42  Aligned_cols=219  Identities=26%  Similarity=0.341  Sum_probs=190.9

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCCc-hhhcCCCCccEEEee-CC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSLP-DSIGLLLNLKVLNVS-GN  229 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~-~n  229 (458)
                      ..+++++++++.+|..+.  +.+++|+|++|+|+.+|. +|.++++|++|++++|.+..++ ..+..+..++.+... .+
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            356888899999997664  579999999999999985 6999999999999999999874 456778899998875 45


Q ss_pred             CCCCC-chhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCCCcc-c
Q 012694          230 KLNTL-PESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHGLP-R  306 (458)
Q Consensus       230 ~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~-~  306 (458)
                      .++.+ +..+.++++|++|++++|.+..++...+....+|+.+++++|.++.++ ..+..+++|++|++++|.++.++ .
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            77777 467889999999999999999888888878999999999999999886 45778899999999999999975 5


Q ss_pred             cccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCc-hhhhCCCCCcEEECcCCCCCCC
Q 012694          307 AIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALP-DTFFRLENLTKLNLDQNPLVIP  375 (458)
Q Consensus       307 ~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~i~~~  375 (458)
                      .+.++++|+++++++|  .+..+ |..+..+++|++|++++|+++.++ ..++.+++|++|++++|++.+.
T Consensus       172 ~f~~l~~L~~l~l~~N--~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQN--RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhccccccchhhhhhc--cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            7889999999999998  44454 678899999999999999999885 6788999999999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=5.1e-23  Score=196.61  Aligned_cols=220  Identities=29%  Similarity=0.408  Sum_probs=176.8

Q ss_pred             ceeEEEecCCCCC---ccchhhCCCCCCcEEEccc-CCCC-ccchhhcCCcccceeeeecCCCCCC-chhhcCCCCccEE
Q 012694          151 VVETVDLADRQLK---LLPEAFGRLRGLVSLNLSR-NLLE-AMPDSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVL  224 (458)
Q Consensus       151 ~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~-n~i~-~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L  224 (458)
                      .++.|+|+++.+.   .+|..++.+++|++|++++ |.++ .+|..++++++|++|++++|++..+ +..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5999999999887   5789999999999999987 6776 8999999999999999999999876 5568889999999


Q ss_pred             EeeCCCCC-CCchhhcCCCCCcEEEcCCCCCC-cCCchhhccCCC-CCEEeccCCcCcc-CCccccCCCCCcEEEcccCC
Q 012694          225 NVSGNKLN-TLPESIARCSSLVELDASFNNLV-CLPTNIGYGLLN-LERLSIKLNKLRT-FPPSICEMRSLKYLDAHFNE  300 (458)
Q Consensus       225 ~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n~  300 (458)
                      ++++|.+. .+|..+.+++.|+.+++++|.+. .+|.... .+.+ ++.++++.|.++. .+..+..+. ...++++.+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccccccccccccccc-cccccccccc
Confidence            99999766 67889999999999999999987 5666555 4555 4889999998873 444555543 3467777776


Q ss_pred             CCC-ccccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCCCC
Q 012694          301 LHG-LPRAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPLVI  374 (458)
Q Consensus       301 l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i~~  374 (458)
                      ..+ +|..+..+++++.+++++|  .+...+..++.+++|+.|++++|+++ .+|..++++++|++|+|++|++++
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~--~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKN--SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSS--EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccc--cccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            665 5666777788888888877  33444456777788888888888887 678888888888888888887774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=6e-22  Score=188.32  Aligned_cols=221  Identities=23%  Similarity=0.332  Sum_probs=188.2

Q ss_pred             eeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCC
Q 012694          152 VETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       152 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n  229 (458)
                      .+.+++++.+++++|..+.  +++++|++++|+|+.+++ +|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            5778999999999998764  689999999999999986 699999999999999999988 567999999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCc--------------------------hhhccCCCCCEEeccCCcCccCCc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPT--------------------------NIGYGLLNLERLSIKLNKLRTFPP  283 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~--------------------------~~~~~l~~L~~L~L~~n~l~~l~~  283 (458)
                      +++.+|..+  ...+..|++.+|.+..++.                          ..+..+++|+.+++++|.+..++.
T Consensus        90 ~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_          90 QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc
Confidence            999987643  4578888888776654322                          223367789999999999998876


Q ss_pred             cccCCCCCcEEEcccCCCCCc-cccccCCCcccEEEccCCCCCCCcc-chhhcCCCCCCEEeccCCCCCCCchhhhCCCC
Q 012694          284 SICEMRSLKYLDAHFNELHGL-PRAIGKLTRLEVLNLSSNFNDLTEL-PETIGDLINLRELDLSNNQIRALPDTFFRLEN  361 (458)
Q Consensus       284 ~l~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~  361 (458)
                      .+  +++|++|++++|.+... +..+..++.+++|++++|  .+..+ +.++..+++|++|+|++|+|+.+|.++..+++
T Consensus       168 ~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n--~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~  243 (305)
T d1xkua_         168 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN--SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  243 (305)
T ss_dssp             SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS--CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             cc--CCccCEEECCCCcCCCCChhHhhccccccccccccc--cccccccccccccccceeeecccccccccccccccccC
Confidence            54  67999999999998884 567899999999999998  55666 45678899999999999999999999999999


Q ss_pred             CcEEECcCCCCCCCcHHHH
Q 012694          362 LTKLNLDQNPLVIPPMEIV  380 (458)
Q Consensus       362 L~~L~L~~n~i~~~~~~~~  380 (458)
                      |++|++++|+|+.++...+
T Consensus       244 L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         244 IQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CCEEECCSSCCCCCCTTSS
T ss_pred             CCEEECCCCccCccChhhc
Confidence            9999999999998765443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=4.1e-21  Score=187.86  Aligned_cols=222  Identities=21%  Similarity=0.313  Sum_probs=147.4

Q ss_pred             ccCCCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCc-------------
Q 012694          146 AESGVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLP-------------  212 (458)
Q Consensus       146 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~-------------  212 (458)
                      +..+++|++|++++|.|+.++. ++.+++|++|++++|.+..+++ ++++++|+.|+++++.++.++             
T Consensus        62 l~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          62 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             cccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            3456778888888888888764 7888888888888888887753 778888888887766554211             


Q ss_pred             ---------------------------------------------------hhhcCCCCccEEEeeCCCCCCCchhhcCC
Q 012694          213 ---------------------------------------------------DSIGLLLNLKVLNVSGNKLNTLPESIARC  241 (458)
Q Consensus       213 ---------------------------------------------------~~l~~l~~L~~L~l~~n~l~~l~~~l~~l  241 (458)
                                                                         .....+++++.+++++|.++.++. ...+
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~  218 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGIL  218 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGC
T ss_pred             ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-cccc
Confidence                                                               112233455555555555554432 3445


Q ss_pred             CCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcc----------------
Q 012694          242 SSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLP----------------  305 (458)
Q Consensus       242 ~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~----------------  305 (458)
                      ++|++|++++|.++.++.  +..+++|+.|++++|.++.++ .+..+++|++|++++|.+++++                
T Consensus       219 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  295 (384)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCCEEECCCCCCCCcch--hhcccccchhccccCccCCCC-cccccccCCEeeccCcccCCCCcccccccccccccccc
Confidence            566666666666655532  224556666666666555543 2445555555555555544432                


Q ss_pred             -----ccccCCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCcH
Q 012694          306 -----RAIGKLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       306 -----~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~~  377 (458)
                           ..+..+++++.|++++|  .+..++ .+..+++|++|++++|+|+.++ .+.++++|++|++++|++++.++
T Consensus       296 ~l~~~~~~~~~~~l~~L~ls~n--~l~~l~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         296 QLEDISPISNLKNLTYLTLYFN--NISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CCSCCGGGGGCTTCSEEECCSS--CCSCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             ccccccccchhcccCeEECCCC--CCCCCc-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh
Confidence                 12556678888888887  556664 3778889999999999999886 68889999999999999887653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.2e-22  Score=194.12  Aligned_cols=225  Identities=22%  Similarity=0.239  Sum_probs=194.1

Q ss_pred             HhccCCCceeEEEecC-CCCC-ccchhhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeeecCCCC-CCchhhcCCC
Q 012694          144 QEAESGVVVETVDLAD-RQLK-LLPEAFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVSSNLLQ-SLPDSIGLLL  219 (458)
Q Consensus       144 ~~~~~~~~L~~L~l~~-~~l~-~l~~~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~  219 (458)
                      ..+...++|++|++++ |.+. .+|..|+++++|++|++++|++..++ ..+..+.+|++++++.|.+. .+|..+.+++
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~  149 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCc
Confidence            3445678999999987 7776 89999999999999999999998664 56889999999999999866 5688999999


Q ss_pred             CccEEEeeCCCCC-CCchhhcCCCCC-cEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc-cCCccccCCCCCcEEEc
Q 012694          220 NLKVLNVSGNKLN-TLPESIARCSSL-VELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR-TFPPSICEMRSLKYLDA  296 (458)
Q Consensus       220 ~L~~L~l~~n~l~-~l~~~l~~l~~L-~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~l  296 (458)
                      +|+++++++|.++ .+|..+..+.++ +.+++++|+++......+..+. ...+++..+... .++..+..+++++.+++
T Consensus       150 ~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             ccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            9999999999988 788888888776 8899999999876666554554 457898888776 66777889999999999


Q ss_pred             ccCCCCCccccccCCCcccEEEccCCCCCCC-ccchhhcCCCCCCEEeccCCCCC-CCchhhhCCCCCcEEECcCCCC
Q 012694          297 HFNELHGLPRAIGKLTRLEVLNLSSNFNDLT-ELPETIGDLINLRELDLSNNQIR-ALPDTFFRLENLTKLNLDQNPL  372 (458)
Q Consensus       297 ~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~i  372 (458)
                      ++|.+...+..++.+++|++|+|++|  .+. .+|++++.+++|++|+|++|+|+ .+| .++++++|+.+++.+|+.
T Consensus       229 ~~~~l~~~~~~~~~~~~L~~L~Ls~N--~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         229 AKNSLAFDLGKVGLSKNLNGLDLRNN--RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSS--CCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSE
T ss_pred             ccccccccccccccccccccccCccC--eecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCcc
Confidence            99999987777899999999999998  444 79999999999999999999999 677 468889999999999984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=3.6e-20  Score=180.99  Aligned_cols=217  Identities=24%  Similarity=0.336  Sum_probs=180.5

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      .+|++|++++++|+.+ +.+..+++|++|++++|+|+.+++ ++++++|++|++++|.++.++. ++++++|+.|+++++
T Consensus        44 ~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~  120 (384)
T d2omza2          44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  120 (384)
T ss_dssp             TTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            5699999999999988 478899999999999999999974 9999999999999999998864 889999999999887


Q ss_pred             CCCCCc----------------------------------------------------------------hhhcCCCCCc
Q 012694          230 KLNTLP----------------------------------------------------------------ESIARCSSLV  245 (458)
Q Consensus       230 ~l~~l~----------------------------------------------------------------~~l~~l~~L~  245 (458)
                      .++.++                                                                .....+++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            665321                                                                1234567888


Q ss_pred             EEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCC
Q 012694          246 ELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFND  325 (458)
Q Consensus       246 ~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~  325 (458)
                      .+++++|.++.++..  ..+++|++|++++|.++.++ .+..+++|+.|++++|.+++++. +..+++|++|++++|  .
T Consensus       201 ~l~l~~n~i~~~~~~--~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~--~  274 (384)
T d2omza2         201 SLIATNNQISDITPL--GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN--Q  274 (384)
T ss_dssp             EEECCSSCCCCCGGG--GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS--C
T ss_pred             eeeccCCccCCCCcc--cccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCc--c
Confidence            999999998887653  35789999999999999874 67889999999999999999865 788999999999887  2


Q ss_pred             CCccc---------------------hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694          326 LTELP---------------------ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       326 ~~~l~---------------------~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +..++                     ..+..+++++.|++++|+|+.++ .+..+++|++|++++|+++.++
T Consensus       275 l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred             cCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh
Confidence            22222                     23456678889999999888885 4788899999999999988754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=3.3e-20  Score=168.50  Aligned_cols=202  Identities=23%  Similarity=0.360  Sum_probs=146.8

Q ss_pred             EecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc
Q 012694          156 DLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP  235 (458)
Q Consensus       156 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~  235 (458)
                      ++..+.++.+. .+..+.+|+.|++.+|.|+.+ +.+.++++|++|++++|.++.++. +..+++|+++++++|.++.++
T Consensus        25 ~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred             HhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc
Confidence            34445554432 334456777777777777777 357777778888887777777643 677777888888777777664


Q ss_pred             hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCccc
Q 012694          236 ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLE  315 (458)
Q Consensus       236 ~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~  315 (458)
                       .+.++++|+.++++++....+...  ...+.++.+.++++.+... ..+..+++|++|++++|.+.+.+. ++++++|+
T Consensus       102 -~l~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~  176 (227)
T d1h6ua2         102 -AIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLT  176 (227)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCGGG--TTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             -cccccccccccccccccccccchh--ccccchhhhhchhhhhchh-hhhccccccccccccccccccchh-hcccccce
Confidence             467777888888877776655432  2567778888877777655 346677888888888888877654 77888888


Q ss_pred             EEEccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcC
Q 012694          316 VLNLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQ  369 (458)
Q Consensus       316 ~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~  369 (458)
                      +|++++|  .+..++. ++.+++|++|++++|+|++++ .+.++++|+.|++++
T Consensus       177 ~L~Ls~n--~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         177 TLKADDN--KISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSS--CCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             ecccCCC--ccCCChh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            8888887  5666653 778888999999999888886 478888899888863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.6e-20  Score=175.15  Aligned_cols=201  Identities=29%  Similarity=0.358  Sum_probs=175.0

Q ss_pred             CceeEEEecCCCCCccch-hhCCCCCCcEEEcccCCCCccc-hhhcCCcccceeeee-cCCCCCC-chhhcCCCCccEEE
Q 012694          150 VVVETVDLADRQLKLLPE-AFGRLRGLVSLNLSRNLLEAMP-DSIAGLQKLEELDVS-SNLLQSL-PDSIGLLLNLKVLN  225 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~i~~l~-~~l~~l~~L~~L~L~-~n~l~~l-~~~l~~l~~L~~L~  225 (458)
                      .++++|+|++|.|+.+|. .|..+++|++|++++|.+..++ ..+.++..++.+... .+.++.+ +..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            468999999999999986 6999999999999999999775 446778889988775 5568777 56789999999999


Q ss_pred             eeCCCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCC-ccccCCCCCcEEEcccCCCCC
Q 012694          226 VSGNKLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFP-PSICEMRSLKYLDAHFNELHG  303 (458)
Q Consensus       226 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~  303 (458)
                      +++|.+..++ ..+..+.+|+.+++++|.++.++...+..+++|+.|++++|.++.++ ..+.++++|+++++++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            9999988764 45667899999999999999999888888999999999999999775 567889999999999999999


Q ss_pred             c-cccccCCCcccEEEccCCCCCCCccc-hhhcCCCCCCEEeccCCCCCCC
Q 012694          304 L-PRAIGKLTRLEVLNLSSNFNDLTELP-ETIGDLINLRELDLSNNQIRAL  352 (458)
Q Consensus       304 l-~~~l~~l~~L~~L~L~~n~~~~~~l~-~~l~~l~~L~~L~L~~n~l~~l  352 (458)
                      + |..+..+++|++|++++|  .+..++ ..++.+++|+.|++++|.+...
T Consensus       192 i~~~~f~~l~~L~~L~l~~N--~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cChhHhhhhhhccccccccc--ccccccccccccccccCEEEecCCCCCCC
Confidence            6 578999999999999998  445554 5788999999999999988743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=3.6e-19  Score=161.54  Aligned_cols=186  Identities=22%  Similarity=0.357  Sum_probs=163.9

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      .+|+.|++.+|.|+.++ .+.++++|++|++++|.++.+. .+..+++|+++++++|.++.++ .+.++++|+.++++++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-cccccccccccccccc
Confidence            67999999999999984 6899999999999999999885 4899999999999999999885 5889999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      ....++ .+...+.+..+.++++.+.....  +.++++|+.|++++|.+...+ .+.++++|++|++++|++++++. +.
T Consensus       118 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l~  192 (227)
T d1h6ua2         118 QITDVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-LA  192 (227)
T ss_dssp             CCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             cccccc-hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-hhcccccceecccCCCccCCChh-hc
Confidence            887663 46778899999999998876543  336899999999999998764 48899999999999999999865 88


Q ss_pred             CCCcccEEEccCCCCCCCccchhhcCCCCCCEEeccC
Q 012694          310 KLTRLEVLNLSSNFNDLTELPETIGDLINLRELDLSN  346 (458)
Q Consensus       310 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~  346 (458)
                      ++++|++|+|++|  .++.++ .++.+++|+.|++++
T Consensus       193 ~l~~L~~L~Ls~N--~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         193 SLPNLIEVHLKNN--QISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GCTTCCEEECTTS--CCCBCG-GGTTCTTCCEEEEEE
T ss_pred             CCCCCCEEECcCC--cCCCCc-ccccCCCCCEEEeeC
Confidence            9999999999998  677886 488999999999975

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=4.4e-19  Score=158.96  Aligned_cols=164  Identities=24%  Similarity=0.349  Sum_probs=92.2

Q ss_pred             CCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCC
Q 012694          172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASF  251 (458)
Q Consensus       172 l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~  251 (458)
                      +.+|++|++++|.++.++ .+..+++|++|++++|+++.++ .++.+++|++|++++|+++.++ .+..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccc
Confidence            446666666666666653 3566666666666666666654 2455666666666666666554 355555566666555


Q ss_pred             CCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccch
Q 012694          252 NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELPE  331 (458)
Q Consensus       252 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~  331 (458)
                      |.+..++                         .+..+++++.+++++|.+++.+ .+..+++|+++++++|  .+..++.
T Consensus       122 ~~~~~~~-------------------------~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n--~l~~i~~  173 (210)
T d1h6ta2         122 NGISDIN-------------------------GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN--QISDIVP  173 (210)
T ss_dssp             SCCCCCG-------------------------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS--CCCCCGG
T ss_pred             ccccccc-------------------------cccccccccccccccccccccc-cccccccccccccccc--ccccccc
Confidence            5554433                         3344445555555555554432 2444555555555555  3344432


Q ss_pred             hhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECc
Q 012694          332 TIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLD  368 (458)
Q Consensus       332 ~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~  368 (458)
                       ++.+++|++|++++|+|++++ .+.++++|++|+|+
T Consensus       174 -l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 -LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             -ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence             455556666666666666554 45556666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=6.9e-19  Score=156.33  Aligned_cols=162  Identities=24%  Similarity=0.396  Sum_probs=94.2

Q ss_pred             CCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcC
Q 012694          171 RLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDAS  250 (458)
Q Consensus       171 ~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~  250 (458)
                      .+.++++|++++|.|+.+. .+..+++|++|++++|+++.++. ++++++|++|++++|.+..++ .+.+++.|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccc
Confidence            3456677777777776663 46666677777777776666643 666666666666666666554 35555666666665


Q ss_pred             CCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCccccccCCCcccEEEccCCCCCCCccc
Q 012694          251 FNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVLNLSSNFNDLTELP  330 (458)
Q Consensus       251 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~  330 (458)
                      +|.+..++                         .+..+++|+.|++++|.+..++ .+..+++|+.|++.+|  .+..++
T Consensus       115 ~~~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n--~l~~l~  166 (199)
T d2omxa2         115 NNQITDID-------------------------PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN--QVTDLK  166 (199)
T ss_dssp             SSCCCCCG-------------------------GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS--CCCCCG
T ss_pred             cccccccc-------------------------ccchhhhhHHhhhhhhhhcccc-cccccccccccccccc--cccCCc
Confidence            55544432                         2344455555555555555443 2455555555555555  334443


Q ss_pred             hhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEE
Q 012694          331 ETIGDLINLRELDLSNNQIRALPDTFFRLENLTKL  365 (458)
Q Consensus       331 ~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L  365 (458)
                       .++++++|++|++++|+|++++ .++++++|++|
T Consensus       167 -~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 -PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             -cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence             2555666666666666666653 45556666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=7.9e-19  Score=157.30  Aligned_cols=164  Identities=23%  Similarity=0.286  Sum_probs=139.1

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ..++.|+++++.++.++ .+..+++|++|++++|+|+.++ .++.+++|++|++++|+++.++ .+.++++|+.|++++|
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccc
Confidence            46899999999999876 5788999999999999999986 4789999999999999999987 5889999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      .+..++ .+..++.++.+++++|.++..+.  ...+++|+.+++++|.++.++ .+.++++|++|++++|.+++++ .+.
T Consensus       123 ~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~  197 (210)
T d1h6ta2         123 GISDIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLR-ALA  197 (210)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG-GGT
T ss_pred             cccccc-ccccccccccccccccccccccc--ccccccccccccccccccccc-cccCCCCCCEEECCCCCCCCCh-hhc
Confidence            988774 68889999999999999886653  336788888888888888774 4777888888888888888776 477


Q ss_pred             CCCcccEEEccC
Q 012694          310 KLTRLEVLNLSS  321 (458)
Q Consensus       310 ~l~~L~~L~L~~  321 (458)
                      ++++|++|+|++
T Consensus       198 ~l~~L~~L~Ls~  209 (210)
T d1h6ta2         198 GLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCSEEEEEE
T ss_pred             CCCCCCEEEccC
Confidence            788888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2e-18  Score=153.28  Aligned_cols=160  Identities=23%  Similarity=0.364  Sum_probs=136.9

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      .+++.|+++++.++.+. .++.+++|++|++++|+++.+++ ++++++|++|++++|.+..++ .+.++++|+.|++++|
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccc
Confidence            67999999999999884 58889999999999999999865 999999999999999999886 4889999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCccCCccccCCCCCcEEEcccCCCCCcccccc
Q 012694          230 KLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLRTFPPSICEMRSLKYLDAHFNELHGLPRAIG  309 (458)
Q Consensus       230 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~  309 (458)
                      .+..+ ..+..+++|+.|++++|.+..++.  +..+++|+.|++.+|.++.++ .+.++++|++|++++|++++++ .++
T Consensus       117 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l~  191 (199)
T d2omxa2         117 QITDI-DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLA  191 (199)
T ss_dssp             CCCCC-GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGG
T ss_pred             ccccc-cccchhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-ccc
Confidence            88876 357889999999999999887753  336888888888888888774 4778888888888888888875 367


Q ss_pred             CCCcccEE
Q 012694          310 KLTRLEVL  317 (458)
Q Consensus       310 ~l~~L~~L  317 (458)
                      ++++|+.|
T Consensus       192 ~L~~L~~L  199 (199)
T d2omxa2         192 KLTNLESL  199 (199)
T ss_dssp             GCTTCSEE
T ss_pred             CCCCCCcC
Confidence            77877765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=2e-17  Score=158.90  Aligned_cols=212  Identities=33%  Similarity=0.375  Sum_probs=116.6

Q ss_pred             CceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCC
Q 012694          150 VVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       150 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n  229 (458)
                      ++|++|++++|.|+.+|..   +.+|+.|++++|.++.++. +  .+.|++|++++|.++.+|. ++.+++|++|+++++
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhh-h--ccccccccccccccccccc-hhhhccceeeccccc
Confidence            4466666666666655543   2355666666665555532 1  1346666666666666653 455666666666666


Q ss_pred             CCCCCch-------------------hhcCCCCCcEEEcCCCCCCcCCc------------------hhhccCCCCCEEe
Q 012694          230 KLNTLPE-------------------SIARCSSLVELDASFNNLVCLPT------------------NIGYGLLNLERLS  272 (458)
Q Consensus       230 ~l~~l~~-------------------~l~~l~~L~~L~l~~n~l~~l~~------------------~~~~~l~~L~~L~  272 (458)
                      .+...+.                   .+..++.++.++++.|....++.                  .....++.|+.++
T Consensus       131 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~  210 (353)
T d1jl5a_         131 SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY  210 (353)
T ss_dssp             CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred             cccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccccccc
Confidence            5442221                   12334455555555543332110                  0011345566666


Q ss_pred             ccCCcCccCCccccC-----------------CCCCcEEEcccCCCCCcc-----------------ccccCCCcccEEE
Q 012694          273 IKLNKLRTFPPSICE-----------------MRSLKYLDAHFNELHGLP-----------------RAIGKLTRLEVLN  318 (458)
Q Consensus       273 L~~n~l~~l~~~l~~-----------------l~~L~~L~l~~n~l~~l~-----------------~~l~~l~~L~~L~  318 (458)
                      +++|....++.....                 ...+...++..+.+.++.                 .....+++|++|+
T Consensus       211 l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  290 (353)
T d1jl5a_         211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN  290 (353)
T ss_dssp             CCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEE
Confidence            666554433321111                 111222222222211110                 0112246899999


Q ss_pred             ccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECcCCCCCCCc
Q 012694          319 LSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLDQNPLVIPP  376 (458)
Q Consensus       319 L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~i~~~~  376 (458)
                      +++|  .+..+|.   .+++|+.|++++|+|+.+|..   +++|++|++++|+++..|
T Consensus       291 Ls~N--~l~~lp~---~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         291 VSNN--KLIELPA---LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCSS--CCSCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC
T ss_pred             CCCC--ccCcccc---ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCC
Confidence            9998  6677875   367899999999999988753   468999999999998765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-17  Score=152.96  Aligned_cols=213  Identities=20%  Similarity=0.213  Sum_probs=166.0

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccch-hhcCCcccceeeeecCCCCCC--chhhcCCCCccEEEeeC-
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPD-SIAGLQKLEELDVSSNLLQSL--PDSIGLLLNLKVLNVSG-  228 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~-~l~~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~L~l~~-  228 (458)
                      +.+++++..++.+|..+.  +++++|++++|.|+.++. .|.++++|++|++++|.+...  +..+.+++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            578899999999987654  589999999999999875 589999999999999988754  34678899999999865 


Q ss_pred             CCCCCCc-hhhcCCCCCcEEEcCCCCCCcCCch-hhccCCCCCEEeccCCcCccCCc-cccCC-CCCcEEEcccCCCCCc
Q 012694          229 NKLNTLP-ESIARCSSLVELDASFNNLVCLPTN-IGYGLLNLERLSIKLNKLRTFPP-SICEM-RSLKYLDAHFNELHGL  304 (458)
Q Consensus       229 n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~l~~-~l~~l-~~L~~L~l~~n~l~~l  304 (458)
                      |.+..++ ..+.++++|++|++++|.+...+.. ....+..+..+...++.+..++. .+..+ ..++.|++++|+++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            5676554 5678899999999999999876543 23355666677777778877653 34444 4789999999999998


Q ss_pred             cccccCCCcccEEE-ccCCCCCCCccchh-hcCCCCCCEEeccCCCCCCCch-hhhCCCCCcEEECcC
Q 012694          305 PRAIGKLTRLEVLN-LSSNFNDLTELPET-IGDLINLRELDLSNNQIRALPD-TFFRLENLTKLNLDQ  369 (458)
Q Consensus       305 ~~~l~~l~~L~~L~-L~~n~~~~~~l~~~-l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~  369 (458)
                      +.......++..+. +++|  .++.+|.. +.++++|++|++++|+|+.+|. .+.++++|+.+++.+
T Consensus       169 ~~~~~~~~~l~~~~~l~~n--~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNN--NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCT--TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccchhhhcccccccc--ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            87666677776665 4554  67788754 7889999999999999999964 577777777766644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=146.20  Aligned_cols=200  Identities=18%  Similarity=0.220  Sum_probs=161.0

Q ss_pred             CcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch-hhcCCCCccEEEeeCCCCCCC-c-hhhcCCCCCcEEEcCC
Q 012694          175 LVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD-SIGLLLNLKVLNVSGNKLNTL-P-ESIARCSSLVELDASF  251 (458)
Q Consensus       175 L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l-~-~~l~~l~~L~~L~l~~  251 (458)
                      .++++.++..++.+|..+.  +++++|++++|.|+.+|. .|.++++|++|++++|.+... + ..+.+++.++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4688999999999987653  589999999999999975 689999999999999988753 3 4678899999998764


Q ss_pred             -CCCCcCCchhhccCCCCCEEeccCCcCccCCc--cccCCCCCcEEEcccCCCCCcc-ccccCCC-cccEEEccCCCCCC
Q 012694          252 -NNLVCLPTNIGYGLLNLERLSIKLNKLRTFPP--SICEMRSLKYLDAHFNELHGLP-RAIGKLT-RLEVLNLSSNFNDL  326 (458)
Q Consensus       252 -n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~-~L~~L~L~~n~~~~  326 (458)
                       |.+..++...+.++++|+.+++++|.+...+.  .+..++.+..+...++.+..++ ..+..++ .++.|++++|  .+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n--~l  165 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN--GI  165 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS--CC
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccc--cc
Confidence             67888888888899999999999999986653  3445566677777888888875 3455544 7889999987  67


Q ss_pred             CccchhhcCCCCCCEE-eccCCCCCCCch-hhhCCCCCcEEECcCCCCCCCcHH
Q 012694          327 TELPETIGDLINLREL-DLSNNQIRALPD-TFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       327 ~~l~~~l~~l~~L~~L-~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                      ..++.......++..+ ++++|+|+.+|. .|.++++|++|++++|+++..+..
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            7777666566666655 567789999974 588899999999999999987654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=9.3e-17  Score=154.65  Aligned_cols=239  Identities=18%  Similarity=0.173  Sum_probs=177.8

Q ss_pred             HHHHHHhccCCCceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCCcc-----------chhhcCCcccceee
Q 012694          139 VVKILQEAESGVVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLEAM-----------PDSIAGLQKLEELD  202 (458)
Q Consensus       139 ~~~~l~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~~l-----------~~~l~~l~~L~~L~  202 (458)
                      ...+...+.....++.|+|++|.+.     .+...+...++|+.|+++++.+...           ...+..+++|++|+
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            3344555566788999999999886     3445677889999999998765422           24566789999999


Q ss_pred             eecCCCCC-----CchhhcCCCCccEEEeeCCCCCC-----Cchh---------hcCCCCCcEEEcCCCCCCcCCc----
Q 012694          203 VSSNLLQS-----LPDSIGLLLNLKVLNVSGNKLNT-----LPES---------IARCSSLVELDASFNNLVCLPT----  259 (458)
Q Consensus       203 L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----l~~~---------l~~l~~L~~L~l~~n~l~~l~~----  259 (458)
                      +++|.++.     +...+..+++|++|++++|.++.     +...         ....+.|+.+.+++|.++.-..    
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            99999875     34456678999999999998752     1111         2357789999999998874321    


Q ss_pred             hhhccCCCCCEEeccCCcCcc------CCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCC-
Q 012694          260 NIGYGLLNLERLSIKLNKLRT------FPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLT-  327 (458)
Q Consensus       260 ~~~~~l~~L~~L~L~~n~l~~------l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~-  327 (458)
                      .....++.|+.|++++|.++.      +...+..+++|+.|++++|.++.     +...+..+++|++|+|++|..+.. 
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            223467899999999999873      33457788999999999999865     446678899999999999843211 


Q ss_pred             --ccchhhcC--CCCCCEEeccCCCCCC-----Cchhhh-CCCCCcEEECcCCCCCCCcH
Q 012694          328 --ELPETIGD--LINLRELDLSNNQIRA-----LPDTFF-RLENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       328 --~l~~~l~~--l~~L~~L~L~~n~l~~-----l~~~l~-~l~~L~~L~L~~n~i~~~~~  377 (458)
                        .+...+..  .+.|++|++++|+|+.     +...+. ++++|++|+|++|.+.....
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~  319 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  319 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcch
Confidence              12233433  4679999999999983     334553 57899999999999986553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=9.5e-17  Score=141.38  Aligned_cols=125  Identities=22%  Similarity=0.275  Sum_probs=65.9

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCc-cc-hhhcCCcccceeeeecCCCCCC-chhhcCCCCccEEEeeCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEA-MP-DSIAGLQKLEELDVSSNLLQSL-PDSIGLLLNLKVLNVSGN  229 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~-l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~l~~n  229 (458)
                      +++++++++++.+|..+.  +++++|+|++|.|+. ++ ..|.++++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            355666666666665442  456666666666653 22 3355556666666666555544 234455555555555555


Q ss_pred             CCCCCch-hhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccCCcCc
Q 012694          230 KLNTLPE-SIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKLNKLR  279 (458)
Q Consensus       230 ~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  279 (458)
                      +++.++. .|.++++|++|++++|.|+.++.+.+..+++|++|++++|.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555432 3445555555555555555555544444444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.6e-16  Score=139.85  Aligned_cols=125  Identities=22%  Similarity=0.290  Sum_probs=63.8

Q ss_pred             cEEEcccCCCCccchhhcCCcccceeeeecCCCCC-C-chhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcCCC
Q 012694          176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQS-L-PDSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDASFN  252 (458)
Q Consensus       176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~-l-~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n  252 (458)
                      ++++.++++++.+|..+.  .++++|+|++|.|+. + +..|.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            455666666666654432  455566666666543 2 234455555555555555555432 34444555555555555


Q ss_pred             CCCcCCchhhccCCCCCEEeccCCcCccCCc-cccCCCCCcEEEcccCCCC
Q 012694          253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFPP-SICEMRSLKYLDAHFNELH  302 (458)
Q Consensus       253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~  302 (458)
                      +++.++...|.++++|++|+|++|.|+.++. .+..+++|++|++++|.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555555554455555555555555554432 2344444444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=136.07  Aligned_cols=125  Identities=19%  Similarity=0.252  Sum_probs=63.4

Q ss_pred             cCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEe
Q 012694          193 AGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLS  272 (458)
Q Consensus       193 ~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~  272 (458)
                      .++.++++|+|++|+|+.++..+..+++|++|++++|.++.+ +.+..+++|++|++++|.++.++...+..+++|+.|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            334444555555555554443334445555555555555544 2344455555555555555555544444455555555


Q ss_pred             ccCCcCccCCc--cccCCCCCcEEEcccCCCCCccc----cccCCCcccEEE
Q 012694          273 IKLNKLRTFPP--SICEMRSLKYLDAHFNELHGLPR----AIGKLTRLEVLN  318 (458)
Q Consensus       273 L~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~  318 (458)
                      +++|.++.+++  .+..+++|++|++++|.++..+.    .+..+++|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            55555554432  34555556666666655555432    344555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=4.1e-15  Score=142.46  Aligned_cols=205  Identities=29%  Similarity=0.337  Sum_probs=144.4

Q ss_pred             CCceeEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCch---------------
Q 012694          149 GVVVETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPD---------------  213 (458)
Q Consensus       149 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~---------------  213 (458)
                      ..+|+.|++.+|.++.++..   .+.|++|++++|.++.+|. ++.+++|++|+++++.+...+.               
T Consensus        77 ~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~  152 (353)
T d1jl5a_          77 PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL  152 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             hhhhhhhhhhhcccchhhhh---ccccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccc
Confidence            46799999999999977642   2469999999999999975 6889999999999987764321               


Q ss_pred             ----hhcCCCCccEEEeeCCCCCCCc-------------------hhhcCCCCCcEEEcCCCCCCcCCchhh--------
Q 012694          214 ----SIGLLLNLKVLNVSGNKLNTLP-------------------ESIARCSSLVELDASFNNLVCLPTNIG--------  262 (458)
Q Consensus       214 ----~l~~l~~L~~L~l~~n~l~~l~-------------------~~l~~l~~L~~L~l~~n~l~~l~~~~~--------  262 (458)
                          .+..++.++.+.+.+|.+..++                   ..+..++.|+.+++++|....++....        
T Consensus       153 ~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~  232 (353)
T d1jl5a_         153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR  232 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECC
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                2445677888888877654322                   124557889999999887665443211        


Q ss_pred             --------ccCCCCCEEeccCCcCcc---CC--------------ccccCCCCCcEEEcccCCCCCccccccCCCcccEE
Q 012694          263 --------YGLLNLERLSIKLNKLRT---FP--------------PSICEMRSLKYLDAHFNELHGLPRAIGKLTRLEVL  317 (458)
Q Consensus       263 --------~~l~~L~~L~L~~n~l~~---l~--------------~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L  317 (458)
                              .....+...++..+.+..   ++              .....+++|++|++++|+++.+|..   +++|+.|
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L  309 (353)
T d1jl5a_         233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERL  309 (353)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEE
Confidence                    011223333333322221   11              1112357899999999999999863   6789999


Q ss_pred             EccCCCCCCCccchhhcCCCCCCEEeccCCCCCCCchhhhCCCCCcEEECc
Q 012694          318 NLSSNFNDLTELPETIGDLINLRELDLSNNQIRALPDTFFRLENLTKLNLD  368 (458)
Q Consensus       318 ~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~  368 (458)
                      ++++|  .++.+|+   .+.+|++|++++|+|+.+|...   ..|+.|.+.
T Consensus       310 ~L~~N--~L~~l~~---~~~~L~~L~L~~N~L~~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         310 IASFN--HLAEVPE---LPQNLKQLHVEYNPLREFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             ECCSS--CCSCCCC---CCTTCCEEECCSSCCSSCCCCC---TTCCEEECC
T ss_pred             ECCCC--cCCcccc---ccCCCCEEECcCCcCCCCCccc---cccCeeECc
Confidence            99998  6778875   3568999999999999998533   467777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1e-15  Score=124.53  Aligned_cols=101  Identities=31%  Similarity=0.444  Sum_probs=60.1

Q ss_pred             eEEEecCCCCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCC
Q 012694          153 ETVDLADRQLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLN  232 (458)
Q Consensus       153 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~  232 (458)
                      |.|++++|.++.++ .+..+++|++|++++|.|+.+|+.++.+++|++|++++|.|+.+| .+..+++|++|++++|+++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            35666666666554 355566666666666666666555666666666666666666654 3556666666666666665


Q ss_pred             CCc--hhhcCCCCCcEEEcCCCCCC
Q 012694          233 TLP--ESIARCSSLVELDASFNNLV  255 (458)
Q Consensus       233 ~l~--~~l~~l~~L~~L~l~~n~l~  255 (458)
                      .++  ..+..+++|++|++++|.++
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            543  24555556666666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.1e-16  Score=145.34  Aligned_cols=175  Identities=21%  Similarity=0.268  Sum_probs=79.8

Q ss_pred             CCCCcEEEcccCCCCc--cchhhcCCcccceeeeecCCCCC-CchhhcCCCCccEEEeeCC-CCCC--CchhhcCCCCCc
Q 012694          172 LRGLVSLNLSRNLLEA--MPDSIAGLQKLEELDVSSNLLQS-LPDSIGLLLNLKVLNVSGN-KLNT--LPESIARCSSLV  245 (458)
Q Consensus       172 l~~L~~L~l~~n~i~~--l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~l~~n-~l~~--l~~~l~~l~~L~  245 (458)
                      ..+|++|+++++.++.  +...+.++++|++|++++|.++. .+..+..+++|++|++++| .++.  +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3456666666665542  33345566666666666665542 2344555666666666654 4441  222233455666


Q ss_pred             EEEcCCCC-CCc--CCchhhccCCCCCEEeccCCc--Cc--cCCccccCCCCCcEEEcccCC-CCC-ccccccCCCcccE
Q 012694          246 ELDASFNN-LVC--LPTNIGYGLLNLERLSIKLNK--LR--TFPPSICEMRSLKYLDAHFNE-LHG-LPRAIGKLTRLEV  316 (458)
Q Consensus       246 ~L~l~~n~-l~~--l~~~~~~~l~~L~~L~L~~n~--l~--~l~~~l~~l~~L~~L~l~~n~-l~~-l~~~l~~l~~L~~  316 (458)
                      +|++++|. ++.  +........++|+.|+++++.  ++  .+......+++|++|++++|. +++ ....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            66665542 321  111222223455555555431  22  121222334555555555442 332 2233444555555


Q ss_pred             EEccCCCCCCC-ccchhhcCCCCCCEEeccCC
Q 012694          317 LNLSSNFNDLT-ELPETIGDLINLRELDLSNN  347 (458)
Q Consensus       317 L~L~~n~~~~~-~l~~~l~~l~~L~~L~L~~n  347 (458)
                      |++++|. .++ .....++.+++|+.|+++++
T Consensus       205 L~L~~C~-~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCY-DIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCC-CCChHHHHHHhcCCCCCEEeeeCC
Confidence            5555441 111 11123344455555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.5e-16  Score=131.53  Aligned_cols=123  Identities=25%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             CCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchh-hcCCCCCcEEEcC
Q 012694          172 LRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPES-IARCSSLVELDAS  250 (458)
Q Consensus       172 l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~  250 (458)
                      +.+++.|++++|+|+.++..+..+++|++|++++|.|+.++ .+..+++|++|++++|+++.++.. +..+++|++|+++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            33444444444444444433344444444444444444442 244444444444444444444332 2234444444444


Q ss_pred             CCCCCcCCc-hhhccCCCCCEEeccCCcCccCCc----cccCCCCCcEEE
Q 012694          251 FNNLVCLPT-NIGYGLLNLERLSIKLNKLRTFPP----SICEMRSLKYLD  295 (458)
Q Consensus       251 ~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~  295 (458)
                      +|.++.++. ..+..+++|++|++++|.++..+.    .+..+++|++||
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            444444432 222344555555555555544432    244455555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=3e-15  Score=121.69  Aligned_cols=103  Identities=27%  Similarity=0.269  Sum_probs=69.1

Q ss_pred             cEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCCCCC
Q 012694          176 VSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFNNLV  255 (458)
Q Consensus       176 ~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~  255 (458)
                      |+|++++|+++.++ .++++++|++|++++|.|+.+|..++.+++|++|++++|.++.++ .+..+++|++|++++|.++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            56777777777765 367777777777777777777766777777777777777777764 4666777777777777766


Q ss_pred             cCCc-hhhccCCCCCEEeccCCcCcc
Q 012694          256 CLPT-NIGYGLLNLERLSIKLNKLRT  280 (458)
Q Consensus       256 ~l~~-~~~~~l~~L~~L~L~~n~l~~  280 (458)
                      .++. ..+..+++|+.|++++|.++.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCc
Confidence            6553 233355566666666655543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-15  Score=139.17  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             ceeEEEecCCCCC--ccchhhCCCCCCcEEEcccCCCC-ccchhhcCCcccceeeeecC-CCCC--CchhhcCCCCccEE
Q 012694          151 VVETVDLADRQLK--LLPEAFGRLRGLVSLNLSRNLLE-AMPDSIAGLQKLEELDVSSN-LLQS--LPDSIGLLLNLKVL  224 (458)
Q Consensus       151 ~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~i~-~l~~~l~~l~~L~~L~L~~n-~l~~--l~~~l~~l~~L~~L  224 (458)
                      +|++|+++++.++  .+...+.++++|++|++++|.++ ..+..++++++|++|++++| .++.  +...+.++++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            4445555444443  12233444445555555544443 12233444445555555443 2331  11122334445555


Q ss_pred             EeeCC
Q 012694          225 NVSGN  229 (458)
Q Consensus       225 ~l~~n  229 (458)
                      ++++|
T Consensus       127 ~ls~c  131 (284)
T d2astb2         127 NLSWC  131 (284)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            55443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.5e-16  Score=152.51  Aligned_cols=92  Identities=24%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             hHHHHHHhccCCCceeEEEecCCCCC-----ccchhhCCCCCCcEEEcccCCCCc-----cchhhcC-CcccceeeeecC
Q 012694          138 DVVKILQEAESGVVVETVDLADRQLK-----LLPEAFGRLRGLVSLNLSRNLLEA-----MPDSIAG-LQKLEELDVSSN  206 (458)
Q Consensus       138 ~~~~~l~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~i~~-----l~~~l~~-l~~L~~L~L~~n  206 (458)
                      .+.++++.+   +++++|+|++|.++     .+...+..+++|++|+|++|.|+.     +...+.. ..+|++|++++|
T Consensus        18 ~~~~l~~~l---~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          18 RWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             HHHHHHHHH---TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             HHHHHHHhC---CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence            334445444   77889999999987     445667889999999999999873     2233332 357999999999


Q ss_pred             CCCC-----CchhhcCCCCccEEEeeCCCCC
Q 012694          207 LLQS-----LPDSIGLLLNLKVLNVSGNKLN  232 (458)
Q Consensus       207 ~l~~-----l~~~l~~l~~L~~L~l~~n~l~  232 (458)
                      .++.     ++..+..+++|++|++++|.++
T Consensus        95 ~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          95 CLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             Cccccccccccchhhccccccccccccccch
Confidence            9975     3456788999999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=6.6e-15  Score=141.47  Aligned_cols=214  Identities=20%  Similarity=0.192  Sum_probs=161.4

Q ss_pred             ccchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCCC-----------chhhcCCCCccEEEee
Q 012694          164 LLPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQSL-----------PDSIGLLLNLKVLNVS  227 (458)
Q Consensus       164 ~l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~l-----------~~~l~~l~~L~~L~l~  227 (458)
                      .+...+.....|+.|+|++|.|+     .+...+...++|+.|+++++.....           ...+..+++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            45556777899999999999887     3445678889999999998765532           2345678999999999


Q ss_pred             CCCCCC-----CchhhcCCCCCcEEEcCCCCCCcCC-----ch--------hhccCCCCCEEeccCCcCc-----cCCcc
Q 012694          228 GNKLNT-----LPESIARCSSLVELDASFNNLVCLP-----TN--------IGYGLLNLERLSIKLNKLR-----TFPPS  284 (458)
Q Consensus       228 ~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~l~-----~~--------~~~~l~~L~~L~L~~n~l~-----~l~~~  284 (458)
                      +|.++.     +...+..+++|++|++++|.++...     ..        .....+.|+.+.+++|.++     .+...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            998874     3455667899999999999875211     11        1125678999999999886     33445


Q ss_pred             ccCCCCCcEEEcccCCCCC------ccccccCCCcccEEEccCCCCCC---CccchhhcCCCCCCEEeccCCCCCCC---
Q 012694          285 ICEMRSLKYLDAHFNELHG------LPRAIGKLTRLEVLNLSSNFNDL---TELPETIGDLINLRELDLSNNQIRAL---  352 (458)
Q Consensus       285 l~~l~~L~~L~l~~n~l~~------l~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~l~~l---  352 (458)
                      +...++|++|++++|.+..      +...+..+++|+.|++++|..+.   ..+...+..+++|++|+|++|.|+..   
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            6678899999999999876      23457788999999999984321   22445677899999999999999842   


Q ss_pred             --chhhhC--CCCCcEEECcCCCCCCCcH
Q 012694          353 --PDTFFR--LENLTKLNLDQNPLVIPPM  377 (458)
Q Consensus       353 --~~~l~~--l~~L~~L~L~~n~i~~~~~  377 (458)
                        ...+..  .+.|++|++++|.|+....
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence              234443  4679999999999875433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.6e-14  Score=141.54  Aligned_cols=238  Identities=20%  Similarity=0.172  Sum_probs=151.6

Q ss_pred             HHHHhccCCCceeEEEecCCCCCc-----cchhhCC-CCCCcEEEcccCCCCc-----cchhhcCCcccceeeeecCCCC
Q 012694          141 KILQEAESGVVVETVDLADRQLKL-----LPEAFGR-LRGLVSLNLSRNLLEA-----MPDSIAGLQKLEELDVSSNLLQ  209 (458)
Q Consensus       141 ~~l~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~-l~~L~~L~l~~n~i~~-----l~~~l~~l~~L~~L~L~~n~l~  209 (458)
                      .+...+...++|+.|++++|.|+.     +...+.. ..+|++|++++|.++.     ++..+..+++|++|++++|.++
T Consensus        46 ~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          46 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            333445678999999999999863     2333332 3579999999999984     3566888999999999998765


Q ss_pred             CC-----ch-----------------------------hhcCCCCccEEEeeCCCC------------------------
Q 012694          210 SL-----PD-----------------------------SIGLLLNLKVLNVSGNKL------------------------  231 (458)
Q Consensus       210 ~l-----~~-----------------------------~l~~l~~L~~L~l~~n~l------------------------  231 (458)
                      ..     ..                             .+.....++.++++++.+                        
T Consensus       126 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~  205 (460)
T d1z7xw1         126 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL  205 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             hhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            21     00                             011223444454444321                        


Q ss_pred             -----CCC----------------------------------chhhcCCCCCcEEEcCCCCCCcCCc----hhhccCCCC
Q 012694          232 -----NTL----------------------------------PESIARCSSLVELDASFNNLVCLPT----NIGYGLLNL  268 (458)
Q Consensus       232 -----~~l----------------------------------~~~l~~l~~L~~L~l~~n~l~~l~~----~~~~~l~~L  268 (458)
                           ...                                  .........++.+++++|.+.....    ......+.+
T Consensus       206 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l  285 (460)
T d1z7xw1         206 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL  285 (460)
T ss_dssp             TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred             ccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccc
Confidence                 100                                  0001123456666666665542221    112246677


Q ss_pred             CEEeccCCcCcc-----CCccc-cCCCCCcEEEcccCCCCCc-----cccccCCCcccEEEccCCCCCC---Cccchhhc
Q 012694          269 ERLSIKLNKLRT-----FPPSI-CEMRSLKYLDAHFNELHGL-----PRAIGKLTRLEVLNLSSNFNDL---TELPETIG  334 (458)
Q Consensus       269 ~~L~L~~n~l~~-----l~~~l-~~l~~L~~L~l~~n~l~~l-----~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~  334 (458)
                      +.+++++|.++.     +...+ .....|+.+++++|.++..     ...+...++|++|+|++|....   ..+++.+.
T Consensus       286 ~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  365 (460)
T d1z7xw1         286 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  365 (460)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             cccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh
Confidence            778887777652     11222 2346799999999988762     3345667789999999983321   12344443


Q ss_pred             -CCCCCCEEeccCCCCCC-----CchhhhCCCCCcEEECcCCCCCCCcHH
Q 012694          335 -DLINLRELDLSNNQIRA-----LPDTFFRLENLTKLNLDQNPLVIPPME  378 (458)
Q Consensus       335 -~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~n~i~~~~~~  378 (458)
                       ..+.|++|+|++|.|+.     +...+..+++|++|+|++|+|+.....
T Consensus       366 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  415 (460)
T d1z7xw1         366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL  415 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred             cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHH
Confidence             46779999999999983     445677889999999999999854433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.46  E-value=4.9e-16  Score=137.31  Aligned_cols=127  Identities=24%  Similarity=0.286  Sum_probs=85.4

Q ss_pred             ceeEEEecCC--CCCccchhhCCCCCCcEEEcccCCCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeC
Q 012694          151 VVETVDLADR--QLKLLPEAFGRLRGLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSG  228 (458)
Q Consensus       151 ~L~~L~l~~~--~l~~l~~~~~~l~~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~  228 (458)
                      .++.+++.+.  .+..++..+..+++|++|++++|+|+.++ .+.++++|++|++++|.|+.++.....+++|++|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            3556666654  45566677777778888888887777774 47777778888888777777765555556677777777


Q ss_pred             CCCCCCchhhcCCCCCcEEEcCCCCCCcCCc-hhhccCCCCCEEeccCCcCc
Q 012694          229 NKLNTLPESIARCSSLVELDASFNNLVCLPT-NIGYGLLNLERLSIKLNKLR  279 (458)
Q Consensus       229 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~  279 (458)
                      |+++.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+.
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            7777663 46666677777777777666543 23345666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=8.3e-16  Score=135.80  Aligned_cols=124  Identities=23%  Similarity=0.292  Sum_probs=66.1

Q ss_pred             CcEEEcccC--CCCccchhhcCCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCchhhcCCCCCcEEEcCCC
Q 012694          175 LVSLNLSRN--LLEAMPDSIAGLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLPESIARCSSLVELDASFN  252 (458)
Q Consensus       175 L~~L~l~~n--~i~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n  252 (458)
                      ++.+++.+.  .+..++.++..+++|++|++++|.|+.++ .+..+++|++|++++|.++.++.....+++|++|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc
Confidence            444555443  35555556666666666666666666663 355666666666666666655543333445555555555


Q ss_pred             CCCcCCchhhccCCCCCEEeccCCcCccCC--ccccCCCCCcEEEcccCCC
Q 012694          253 NLVCLPTNIGYGLLNLERLSIKLNKLRTFP--PSICEMRSLKYLDAHFNEL  301 (458)
Q Consensus       253 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~l~~n~l  301 (458)
                      .++.++.  +..+++|+.|++++|.++.++  ..+..+++|++|++++|.+
T Consensus       104 ~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         104 QIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccc--ccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            5554432  123444555555555544433  2344444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.4e-12  Score=105.52  Aligned_cols=104  Identities=18%  Similarity=0.094  Sum_probs=52.1

Q ss_pred             cceeeeecCCCCCCchhhcCCCCccEEEeeCC-CCCCCc-hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCEEeccC
Q 012694          198 LEELDVSSNLLQSLPDSIGLLLNLKVLNVSGN-KLNTLP-ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLERLSIKL  275 (458)
Q Consensus       198 L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~L~L~~  275 (458)
                      .+.++.+++.+.+.|..+..+++|+.|++.+| .++.++ ..|.++++|+.|++++|+|+.++...+..+++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34455555555555555555555555555443 355443 2345555555555555555555554444555555555555


Q ss_pred             CcCccCCccccCCCCCcEEEcccCCC
Q 012694          276 NKLRTFPPSICEMRSLKYLDAHFNEL  301 (458)
Q Consensus       276 n~l~~l~~~l~~l~~L~~L~l~~n~l  301 (458)
                      |+++.++.......+|++|++++|.+
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            55555444433333444444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.8e-11  Score=101.88  Aligned_cols=104  Identities=25%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             CCcEEEcccCCCCccchhhcCCcccceeeeecC-CCCCCc-hhhcCCCCccEEEeeCCCCCCCc-hhhcCCCCCcEEEcC
Q 012694          174 GLVSLNLSRNLLEAMPDSIAGLQKLEELDVSSN-LLQSLP-DSIGLLLNLKVLNVSGNKLNTLP-ESIARCSSLVELDAS  250 (458)
Q Consensus       174 ~L~~L~l~~n~i~~l~~~l~~l~~L~~L~L~~n-~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~  250 (458)
                      ....++++++.+..+|..+..+++|++|++++| .|+.++ .+|.++++|+.|++++|+|+.++ ..|..+++|++|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344455555555555555555555666665444 355553 34555556666666666555553 345555566666666


Q ss_pred             CCCCCcCCchhhccCCCCCEEeccCCcC
Q 012694          251 FNNLVCLPTNIGYGLLNLERLSIKLNKL  278 (458)
Q Consensus       251 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l  278 (458)
                      +|+++.++.+.+. ..+|+.|++++|.+
T Consensus        89 ~N~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CCCCcccChhhhc-cccccccccCCCcc
Confidence            6666655555552 23455666655554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.3e-09  Score=88.69  Aligned_cols=64  Identities=33%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             hcCCcccceeeeecCCCCCCc---hhhcCCCCccEEEeeCCCCCCCch-hhcCCCCCcEEEcCCCCCC
Q 012694          192 IAGLQKLEELDVSSNLLQSLP---DSIGLLLNLKVLNVSGNKLNTLPE-SIARCSSLVELDASFNNLV  255 (458)
Q Consensus       192 l~~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~  255 (458)
                      ...+++|++|++++|+|+.++   ..+..+++|+.|++++|+++.+++ .......|+.|++++|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            345556666666666655442   223445555555555555554432 1112223444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.9e-08  Score=84.64  Aligned_cols=102  Identities=24%  Similarity=0.104  Sum_probs=66.7

Q ss_pred             CCcccceeeeecCCCCCCchhhcCCCCccEEEeeCCCCCCCc---hhhcCCCCCcEEEcCCCCCCcCCchhhccCCCCCE
Q 012694          194 GLQKLEELDVSSNLLQSLPDSIGLLLNLKVLNVSGNKLNTLP---ESIARCSSLVELDASFNNLVCLPTNIGYGLLNLER  270 (458)
Q Consensus       194 ~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~  270 (458)
                      .+..+..++..++....++....++++|++|++++|+++.++   ..+..+++|+.|++++|.++.++...+....+|+.
T Consensus        40 ~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          40 AQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             hccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            333344444444433334344456788888888888887653   34566888888888888888877644445567888


Q ss_pred             EeccCCcCccCC--------ccccCCCCCcEEE
Q 012694          271 LSIKLNKLRTFP--------PSICEMRSLKYLD  295 (458)
Q Consensus       271 L~L~~n~l~~l~--------~~l~~l~~L~~L~  295 (458)
                      |++++|.+....        ..+..+++|+.||
T Consensus       120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            888888876432        1245678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.32  E-value=4.5e-07  Score=76.33  Aligned_cols=105  Identities=19%  Similarity=0.249  Sum_probs=74.6

Q ss_pred             CCceeEEEecCC-CCC-----ccchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCC-----Cc
Q 012694          149 GVVVETVDLADR-QLK-----LLPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQS-----LP  212 (458)
Q Consensus       149 ~~~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l~  212 (458)
                      .+.|++|+|+++ .++     .+...+...+.|++|++++|.++     .+...+...+.|++|++++|.|+.     +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            578999999874 465     34456777888999999998887     334566777888888888888873     33


Q ss_pred             hhhcCCCCccEEEeeCCCCCCC--------chhhcCCCCCcEEEcCCCC
Q 012694          213 DSIGLLLNLKVLNVSGNKLNTL--------PESIARCSSLVELDASFNN  253 (458)
Q Consensus       213 ~~l~~l~~L~~L~l~~n~l~~l--------~~~l~~l~~L~~L~l~~n~  253 (458)
                      .++...++|++|++++|++..+        ...+...++|+.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            4566777888888887765533        3344556777777776553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=5.2e-07  Score=75.92  Aligned_cols=88  Identities=22%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             CCCCCCcEEEcccC-CCC-----ccchhhcCCcccceeeeecCCCCC-----CchhhcCCCCccEEEeeCCCCCC-----
Q 012694          170 GRLRGLVSLNLSRN-LLE-----AMPDSIAGLQKLEELDVSSNLLQS-----LPDSIGLLLNLKVLNVSGNKLNT-----  233 (458)
Q Consensus       170 ~~l~~L~~L~l~~n-~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~-----  233 (458)
                      ...+.|+.|+|+++ .++     .+...+...++|++|++++|.++.     +...+...+.|++|++++|.++.     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577888888764 465     233456677778888888877762     33445556777777777777662     


Q ss_pred             CchhhcCCCCCcEEEcCCCCCCcC
Q 012694          234 LPESIARCSSLVELDASFNNLVCL  257 (458)
Q Consensus       234 l~~~l~~l~~L~~L~l~~n~l~~l  257 (458)
                      +...+...++|++|++++|.+..+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCc
Confidence            334555666677777766655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.01  E-value=3.6e-06  Score=70.42  Aligned_cols=106  Identities=16%  Similarity=0.259  Sum_probs=71.1

Q ss_pred             CCCceeEEEecC-CCCC-----ccchhhCCCCCCcEEEcccCCCC-----ccchhhcCCcccceeeeecCCCCC-----C
Q 012694          148 SGVVVETVDLAD-RQLK-----LLPEAFGRLRGLVSLNLSRNLLE-----AMPDSIAGLQKLEELDVSSNLLQS-----L  211 (458)
Q Consensus       148 ~~~~L~~L~l~~-~~l~-----~l~~~~~~l~~L~~L~l~~n~i~-----~l~~~l~~l~~L~~L~L~~n~l~~-----l  211 (458)
                      ..+.|++|++++ +.++     .+..++...++|++|++++|.++     .+...+...+.++.+++++|.++.     +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            457888888887 4565     34456777888888888888877     234556677788888888887762     3


Q ss_pred             chhhcCCCCccEEEee--CCCCC-----CCchhhcCCCCCcEEEcCCCC
Q 012694          212 PDSIGLLLNLKVLNVS--GNKLN-----TLPESIARCSSLVELDASFNN  253 (458)
Q Consensus       212 ~~~l~~l~~L~~L~l~--~n~l~-----~l~~~l~~l~~L~~L~l~~n~  253 (458)
                      ...+...++|+.+++.  +|.++     .+...+...+.|+.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3456667777765554  44554     244555667777777776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.80  E-value=1.5e-06  Score=72.78  Aligned_cols=109  Identities=16%  Similarity=0.167  Sum_probs=71.2

Q ss_pred             cCCCCCEEeccC-CcCc-----cCCccccCCCCCcEEEcccCCCCC-----ccccccCCCcccEEEccCCCCCCC---cc
Q 012694          264 GLLNLERLSIKL-NKLR-----TFPPSICEMRSLKYLDAHFNELHG-----LPRAIGKLTRLEVLNLSSNFNDLT---EL  329 (458)
Q Consensus       264 ~l~~L~~L~L~~-n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~---~l  329 (458)
                      +.++|++|++++ +.++     .+...+...++|++|++++|.++.     +...+...++++.+++++|..+..   .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            445566666654 3343     234556677788888888888766     334566778888888888733222   23


Q ss_pred             chhhcCCCCCCEEecc--CCCCC-----CCchhhhCCCCCcEEECcCCCC
Q 012694          330 PETIGDLINLRELDLS--NNQIR-----ALPDTFFRLENLTKLNLDQNPL  372 (458)
Q Consensus       330 ~~~l~~l~~L~~L~L~--~n~l~-----~l~~~l~~l~~L~~L~L~~n~i  372 (458)
                      ...+...++|+.++|+  +|.+.     .+...+..+++|++|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3456677888876554  56676     3446677889999999987643